AlfalfaGEDB | MS.gene21124

M. sativa cultivar XinJiangDaYe / MS.gene21124

KEGG: K20660
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21124.t1	XP_013469137.1	96.3	486	17	1	1	486	34	518	7.60E-276	959.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21124.t1	F4IK45	55.6	487	206	5	1	484	91	570	1.4e-161	570.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21124.t1	A0A072VYL9	96.3	486	17	1	1	486	34	518	5.5e-276	959.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene016742	MS.gene21124	PPI
MS.gene016743	MS.gene21124	PPI
MS.gene018407	MS.gene21124	PPI
MS.gene026317	MS.gene21124	PPI
MS.gene034713	MS.gene21124	PPI
MS.gene036057	MS.gene21124	PPI
MS.gene044589	MS.gene21124	PPI
MS.gene057886	MS.gene21124	PPI
MS.gene067184	MS.gene21124	PPI
MS.gene070505	MS.gene21124	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21124.t1	MTR_1g085680	96.296	486	17	1	1	486	34	518	0.0	986
MS.gene21124.t1	MTR_7g006900	41.770	486	259	7	8	485	4	473	2.50e-133	394
MS.gene21124.t1	MTR_6g017325	41.273	487	262	6	6	484	37	507	6.23e-133	394
MS.gene21124.t1	MTR_4g113650	40.900	489	277	5	4	486	39	521	6.34e-131	390
MS.gene21124.t1	MTR_2g072400	38.398	487	289	6	1	482	34	514	4.95e-120	362
MS.gene21124.t1	MTR_2g072340	38.086	491	293	6	1	486	34	518	5.33e-119	359
MS.gene21124.t1	MTR_7g098550	39.876	484	276	7	1	482	33	503	4.71e-116	351
MS.gene21124.t1	MTR_5g095230	37.347	490	295	6	1	485	33	515	5.68e-112	341
MS.gene21124.t1	MTR_2g072250	37.525	493	290	7	1	485	33	515	2.07e-111	339
MS.gene21124.t1	MTR_1g022040	36.475	488	291	8	1	484	31	503	2.18e-110	336

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene21124.t1	AT2G46950	56.057	487	204	6	1	484	91	570	0.0	583
MS.gene21124.t1	AT2G46960	54.898	490	211	7	1	485	34	518	0.0	563
MS.gene21124.t1	AT4G27710	52.577	485	226	4	1	484	36	517	0.0	539
MS.gene21124.t1	AT2G46960	55.037	407	173	7	84	485	1	402	1.47e-163	468
MS.gene21124.t1	AT2G46950	53.736	348	151	6	1	345	91	431	1.57e-131	388
MS.gene21124.t1	AT2G26710	40.657	487	271	8	4	484	41	515	3.22e-131	390
MS.gene21124.t1	AT3G14660	39.709	481	284	6	4	484	38	512	2.89e-123	370
MS.gene21124.t1	AT3G14690	39.463	484	287	6	1	484	35	512	4.81e-123	369
MS.gene21124.t1	AT3G14690	39.463	484	287	6	1	484	70	547	9.56e-123	369
MS.gene21124.t1	AT3G14640	38.509	483	289	6	4	484	38	514	2.94e-118	357

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Find 96 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGCAAGTAGAGCATTT+GGG	0.544504	1.4:+67824943	None:intergenic
AAACAATGATGAAGGATGCA+AGG	0.574174	1.4:-67828940	MS.gene21124:CDS
AAAGCAAGCTATTGAAACAA+AGG	0.561598	1.4:-67826363	MS.gene21124:CDS
AAAGGTGAATATGGTGTTGC+TGG	0.406285	1.4:-67825171	MS.gene21124:intron
AAATAAATTACCGTATAAGG+AGG	0.645892	1.4:+67828850	None:intergenic
AACTAAACCTTCTCCTATCA+TGG	0.478813	1.4:+67828571	None:intergenic
AATCCAATGAGATTCATAAA+TGG	0.372514	1.4:-67824987	MS.gene21124:CDS
ACAGGTGCATGTTCATAGTC+AGG	0.474129	1.4:+67824822	None:intergenic
ACAGGTTATGATAAGTAGAA+TGG	0.525004	1.4:-67826420	MS.gene21124:intron
ACATCAGAGATGCAAATCCT+CGG	0.627963	1.4:+67828668	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGCAAGCTATTGAAACAA+AGG	-	chr1.4:67827411-67827430	MS.gene21124:intron	30.0%
ACAGGTTATGATAAGTAGAA+TGG	-	chr1.4:67827354-67827373	MS.gene21124:intron	30.0%
ACTAACTTTCTTAATTCTCG+TGG	+	chr1.4:67825000-67825019	None:intergenic	30.0%
ACTAATTCCTAGTATTTCAG+TGG	+	chr1.4:67826881-67826900	None:intergenic	30.0%
ACTCAAACGATATTACTCAA+AGG	-	chr1.4:67824876-67824895	MS.gene21124:CDS	30.0%
AGTCAAATATTGAGATATGG+AGG	-	chr1.4:67827737-67827756	MS.gene21124:intron	30.0%
ATGTGATTAACTAGATGTAG+TGG	+	chr1.4:67825673-67825692	None:intergenic	30.0%
CAACGGTATCATTAAATATG+TGG	-	chr1.4:67826333-67826352	MS.gene21124:CDS	30.0%
CAATGGGTATAACCAATATA+TGG	-	chr1.4:67827155-67827174	MS.gene21124:intron	30.0%
CAATTCATTGTTTATCCAAG+TGG	+	chr1.4:67825501-67825520	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	67824758	67829038	67824758	ID=MS.gene21124
chr1.4	mRNA	67824758	67829038	67824758	ID=MS.gene21124.t1;Parent=MS.gene21124
chr1.4	exon	67828861	67829038	67828861	ID=MS.gene21124.t1.exon1;Parent=MS.gene21124.t1
chr1.4	CDS	67828861	67829038	67828861	ID=cds.MS.gene21124.t1;Parent=MS.gene21124.t1
chr1.4	exon	67828499	67828722	67828499	ID=MS.gene21124.t1.exon2;Parent=MS.gene21124.t1
chr1.4	CDS	67828499	67828722	67828499	ID=cds.MS.gene21124.t1;Parent=MS.gene21124.t1
chr1.4	exon	67826188	67826438	67826188	ID=MS.gene21124.t1.exon3;Parent=MS.gene21124.t1
chr1.4	CDS	67826188	67826438	67826188	ID=cds.MS.gene21124.t1;Parent=MS.gene21124.t1
chr1.4	exon	67825698	67826073	67825698	ID=MS.gene21124.t1.exon4;Parent=MS.gene21124.t1
chr1.4	CDS	67825698	67826073	67825698	ID=cds.MS.gene21124.t1;Parent=MS.gene21124.t1
chr1.4	exon	67824758	67825189	67824758	ID=MS.gene21124.t1.exon5;Parent=MS.gene21124.t1
chr1.4	CDS	67824758	67825189	67824758	ID=cds.MS.gene21124.t1;Parent=MS.gene21124.t1

Gene Sequence

>MS.gene21124

ATGACTAGGCACTTTCGAAAGCAAGGAGTCATTGGACCACCTTACTCACTTGTTTCGGGTTCACTTCATGATATCAAAACAATGATGAAGGATGCAAGGAATATGGTCATGGATAAACACTCAAACGATATTACTCAAAGGGTTCTTCCTCACTACCAAATATGGTCCTCCTTATACGGTAATTTATTTCTCTTCTATATATACCTCTTCGATTTAAATATAGAATTTTGTCGACTAAACCACGAGAATTAAGAAAGTTAGTAGTGTATACACACACGCATGTATGATTCTTAATAATTTTTCACCATGCATGCAGGGGAGAGATTTCTATATTGGTACGGAATAGAACCGAGGATTTGCATCTCTGATGTAGAGCTGGCCAAAGAGATTTTATCAAATAAATTTGGTTTTTATGAAAAACCCAAAACAAGGCCTTCGATAGTAACCATGATAGGAGAAGGTTTAGTTCTTCTCAATGGAGTGGAATGGGTTAGGCGCAGAAGGATACTCAATCCTGCTTTCTCTATGGATAAACTCAAGGTCTTAACTCTCAAGTTTAGTTTTCTCCGTAATTATAACACCATGCACAATATCAAATTAAAAGAGGAAATTTTCTCATCTTTTCTTAACTCATCATTAAAGTATGACATAAAATAAAACTATGATGAGATTTTTTTACAAAAAAAAATATAAAATAATTCAAAGATCTTTTTTTTAATACAAAGATGTTTTATGGTCATCCACTTGGATAAACAATGAATTGATCTAAGTTGTTATAGTTTGAAAATTAGGTTTGAAAGGAAAAACTCATCTTGTATACCTAATATGTTTTTTTTGACAAAAGTTAGTCATTATTACTAAACGATGGTAAATTTTTTGTATTTTTATCATGGTAATCTAAAAATACCACACCCACTACATCTAGTTAATCACATGTAAAAATATGGATAATTCAATTTAGTAAATGATTAATTCAATTTACATTGAAAATTGTGCTTAACTCAACCATATTTTTAAACACAATTAACCTAATGTCGTGCAAGGGTATAAAAAATGGATGTTGATGTATTACTACTGTCTTGAATATTTGTGCAGATGCTCTATGTGGAAGTTTTTACTTTAAAACATCGTTCTTAGAGTTCAAGTTTTTTCTTTCGAAACTATTCATGAATTTTATTTTATTTTAAAATAAAGTGGATTTATATTGCATGTAGTCGAAAAATCATATTAATCAATCTTTTAACCCGTAACCATATTATTATTAAAAATAAAAACTCAACCATATTTATCACTACAACCAATCAGAGTTGTATATGAAGATTGAAAGGGAAGTAATTTTAGACACCCGAATCCAATCTGTCACTAGAGAGAGAGAGAATGAGAACGATATGATATATGTAATAAGTTGGTCAAGTGATATGAACAAAAAGATATGGAGAAAATTAGAAGTTGAATGAGTGTAGAAAAAAATAAGAGTGTTCAAATATAATTGTTCTAAAAAAAGTTTCATATTTTGTGGTTATCCTTTTATATTTGATTTTTCATGCTTAAAATATGAATAATCTCATCTTCATTCAACGGTATCATTAAATATGTGGTATTGTGAGTGATGACAAATTTACTTTAAATGGATGTGTGATAGCCACAGACAAGGTCCAGTGACAATGGTGGCTTTTTCACTGCACACGGTCCAGTGACAATCTCAGTCATTAAATTGCTTTTTAATGATTTTTATAGAGTTTAGTGAAATAAAATGAATGACTGAGATCCCACAGGACTCTCCAGTCACTGGAGCAGATATGCTCCCGATAGCCATAAACACTAAGGGGTTGGTGCATCGGTAAAAAGACATATATTAGATTTGAAGTTTTTGGGTTCGAGTTTCATTAGTTTTTTTTTTTTTTTTATCAAAAGTAAATGAAAATTCTTTTGTAAACATTTTTAAGTTTTAAGGTTTTCTCTATCTTAGATTGGGACACCGTCACCCTACCAAATTTTTCTTGATAAAAAGTACCCCTTCTACAACAAAATAAAAATAAATGATATCTTTGAAAAAAAATAAATAAATAAAATAGATCTAATAAGTTAAATATATTTGGTCTAAAATTTAGAAATACACACCACTGAAATACTAGGAATTAGTTTGCACTTTTATTGTGAACAAAAGTTTATACTAACCAAAACAAGACTTATACCAATTTTTTTTTTTTTTTAAGTTGTATTAGAATCTCACGTCAAAATTTTCGGAGTATTGGATATATATTTGTGTGTAAATTTGAACACTTTCATTCATTCCTTGAGCTAAAAGCGAGGTCCAAACGCATTTAACAAATTAAAACCAGCCTTTTAATTTTTAGACATGATTTTCAATAGTTATCATATTCTTTATTATAAATTCAATGGGTATAACCAATATATGGTGTTACATACATGCGTATCAACCCTTTAAATAGATCTATGTTATCTCGAGTTGATACCTTGATTTACCAAGAAAATAGTCATTGGTAAAAATAAGTAAAAAGAGTAGAACTCAAGTCTTCTTTCATTGGCATTTGGCATTGTATATGCGTGCATTCTAAATACTATATCATATATGACAGGTTATGATAAGTAGAATGGCAGCATGTACCATTTCTATGCTAGATGAGTGGAAAAAGCAAGCTATTGAAACAAAGGAGAAATCAAAGACAATAGAGATGAGTGAAGAATTGCGAGAGCTAACAGCAAATATAATTGCCCACACTGCCTTTGGTACCAGCTTTGTTCATGGAAGAGAAGCTTTTGATGCACAAACACAGCTTCATAAGCATTGCGTAGCTTCAAATTCCGACGTTTTCATTCCTGGCACTCAGTATATTAATCAACTTCTCTTGCTTACTATAGATTCATTGGTTCTGCATAGATCAGTACATAAATAATTTTTTATTTTTTTTATTTTTAATGTTTTGGATTCTTAATGCTGCAGATATTTTCCTACTAAGTCAAATATTGAGATATGGAGGCTTGATAGGAGAATGAAGAAATCACTACAATGCATTATAGAAAGTAGATTGAAATTGAATTCTGAATCAGATTGCTCTTATGGAGATGATCTACTAGGAGTAATGATGGATACAGAAAAAACAAATGATCATGGTCCTAAAAAGTTGAAGATGAATGAAATCATGGATGAATGCAAGACCTTTTTCTTTGCTGGTCATGAAACCACTTCAAACTTACTTAATTGGACCGTCTTTTTGTTGAGTTTGCACAAGGATTGGCAAGACAAACTTAGACAAGAGGTCCAACAGATTTGTGGCATGGAAATTCCTGATGCAGATATGCTATCAAAGTTAAAAATGGTAATATCAACTCGAAAACCTTCATTCTTAGTTTTTCAGATTTAGGTCTAGAGCATTGCTATTTAACCAACTTAGGGAGCAGATCCTCTCCTGTGGAAAGTGTGTGCAATTAAACAATAGAACAATTGGAATTCCCCTTGGACTCTCTCAAGTGAAAATCTCACGGGAGAGGATCCGTGTCCCAATTTAATACAATTTTGGTGGTACAATATAGTCGTAGAGAAAAGATAATAAAAGAGAGAAAATGGCTATGCTAGGCTACTAAACTAACTTTCGCCATTCATTCTCTATGTTTATTACATTCATCAATTCTCTACTTATACAAGTTAAGCATAACATAAATTAACATATTCACGACACTCTAATCAACTAGCAAATAACTCATCATACTGAGATCTCTTTTGATCATTCTAGAAATCGGTCACTCATAATCGAAGAAAACTAACTTACAATGGTTTAAGTCTAACATCTTAACAAAATTAACTAACAATGTGTCTCATTTTTAAAGGTGAATATGGTGTTGCTGGAAGCATTAAGGTTGTACTGTCCTGCAATACAACTAGAAAGAGTGGCTTCACAAGACATGAAATTAGGAAATTTGATGATCCCTCGAGGAACATGTCTCACAATCCCAATAACAATGATTCACACAAGTAAAAAATATTGGGGTGAAGATGCAAATGAGTTCAATCCAATGAGATTCATAAATGGAATATCTAAGGCCTCAAATCACCCAAATGCTCTACTTGCATTTTCTGTGGGTCCAAGAAATTGTATTGGTCAGAATTTTGCTATGTTGGAAGCTAAGACAGTGATGACTTTGATTCTTCAAAGGTTTTCTTGGTCTCTTTCTCCTGACTATGAACATGCACCTGTTAACAACCTTACTTTGCAACCACAACATGGCCTTCCCATCATTATTAAACCATTGCAGTTATAA

Protein sequence

>MS.gene21124.t1

MTRHFRKQGVIGPPYSLVSGSLHDIKTMMKDARNMVMDKHSNDITQRVLPHYQIWSSLYGERFLYWYGIEPRICISDVELAKEILSNKFGFYEKPKTRPSIVTMIGEGLVLLNGVEWVRRRRILNPAFSMDKLKVMISRMAACTISMLDEWKKQAIETKEKSKTIEMSEELRELTANIIAHTAFGTSFVHGREAFDAQTQLHKHCVASNSDVFIPGTQYFPTKSNIEIWRLDRRMKKSLQCIIESRLKLNSESDCSYGDDLLGVMMDTEKTNDHGPKKLKMNEIMDECKTFFFAGHETTSNLLNWTVFLLSLHKDWQDKLRQEVQQICGMEIPDADMLSKLKMVNMVLLEALRLYCPAIQLERVASQDMKLGNLMIPRGTCLTIPITMIHTSKKYWGEDANEFNPMRFINGISKASNHPNALLAFSVGPRNCIGQNFAMLEAKTVMTLILQRFSWSLSPDYEHAPVNNLTLQPQHGLPIIIKPLQL