Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56227.t1 | XP_013459209.1 | 94.6 | 481 | 26 | 0 | 1 | 481 | 1 | 481 | 2.80E-262 | 914.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56227.t1 | Q9FGN3 | 52.3 | 478 | 210 | 6 | 12 | 477 | 6 | 477 | 5.5e-126 | 452.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56227.t1 | A0A072UUZ8 | 94.6 | 481 | 26 | 0 | 1 | 481 | 1 | 481 | 2.0e-262 | 914.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene56227 | 0.858988 | 5.64E-63 | -1.69E-46 |
| MS.gene049404 | MS.gene56227 | 0.817927 | 2.56E-52 | -1.69E-46 |
| MS.gene049435 | MS.gene56227 | 0.835014 | 2.15E-56 | -1.69E-46 |
| MS.gene049452 | MS.gene56227 | 0.806615 | 7.55E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene56227 | 0.814947 | 1.19E-51 | -1.69E-46 |
| MS.gene050226 | MS.gene56227 | 0.824454 | 8.00E-54 | -1.69E-46 |
| MS.gene050227 | MS.gene56227 | 0.809962 | 1.46E-50 | -1.69E-46 |
| MS.gene050228 | MS.gene56227 | 0.816541 | 5.24E-52 | -1.69E-46 |
| MS.gene050442 | MS.gene56227 | 0.843632 | 1.24E-58 | -1.69E-46 |
| MS.gene050605 | MS.gene56227 | 0.823449 | 1.38E-53 | -1.69E-46 |
| MS.gene050623 | MS.gene56227 | -0.819219 | 1.30E-52 | -1.69E-46 |
| MS.gene050680 | MS.gene56227 | 0.8167 | 4.83E-52 | -1.69E-46 |
| MS.gene050719 | MS.gene56227 | 0.826117 | 3.23E-54 | -1.69E-46 |
| MS.gene050721 | MS.gene56227 | 0.821067 | 4.92E-53 | -1.69E-46 |
| MS.gene050724 | MS.gene56227 | 0.818583 | 1.82E-52 | -1.69E-46 |
| MS.gene050750 | MS.gene56227 | 0.805248 | 1.46E-49 | -1.69E-46 |
| MS.gene050759 | MS.gene56227 | 0.828204 | 1.02E-54 | -1.69E-46 |
| MS.gene050953 | MS.gene56227 | 0.812901 | 3.36E-51 | -1.69E-46 |
| MS.gene050962 | MS.gene56227 | 0.817516 | 3.17E-52 | -1.69E-46 |
| MS.gene051198 | MS.gene56227 | 0.853817 | 1.86E-61 | -1.69E-46 |
| MS.gene051210 | MS.gene56227 | 0.808702 | 2.72E-50 | -1.69E-46 |
| MS.gene051328 | MS.gene56227 | 0.800036 | 1.74E-48 | -1.69E-46 |
| MS.gene051368 | MS.gene56227 | 0.824474 | 7.91E-54 | -1.69E-46 |
| MS.gene051744 | MS.gene56227 | 0.810942 | 8.97E-51 | -1.69E-46 |
| MS.gene052012 | MS.gene56227 | 0.817738 | 2.82E-52 | -1.69E-46 |
| MS.gene052426 | MS.gene56227 | 0.820081 | 8.28E-53 | -1.69E-46 |
| MS.gene052582 | MS.gene56227 | 0.817311 | 3.52E-52 | -1.69E-46 |
| MS.gene052584 | MS.gene56227 | 0.80397 | 2.70E-49 | -1.69E-46 |
| MS.gene052867 | MS.gene56227 | 0.828734 | 7.63E-55 | -1.69E-46 |
| MS.gene053006 | MS.gene56227 | 0.848154 | 7.34E-60 | -1.69E-46 |
| MS.gene053008 | MS.gene56227 | 0.847871 | 8.79E-60 | -1.69E-46 |
| MS.gene053080 | MS.gene56227 | 0.808912 | 2.45E-50 | -1.69E-46 |
| MS.gene053166 | MS.gene56227 | 0.815206 | 1.04E-51 | -1.69E-46 |
| MS.gene053216 | MS.gene56227 | 0.811719 | 6.08E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene56227 | 0.817129 | 3.87E-52 | -1.69E-46 |
| MS.gene05414 | MS.gene56227 | 0.81125 | 7.69E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene56227 | 0.809507 | 1.83E-50 | -1.69E-46 |
| MS.gene054236 | MS.gene56227 | 0.807949 | 3.94E-50 | -1.69E-46 |
| MS.gene054291 | MS.gene56227 | -0.807483 | 4.94E-50 | -1.69E-46 |
| MS.gene054405 | MS.gene56227 | 0.800838 | 1.19E-48 | -1.69E-46 |
| MS.gene054651 | MS.gene56227 | 0.8026 | 5.19E-49 | -1.69E-46 |
| MS.gene054657 | MS.gene56227 | 0.838937 | 2.14E-57 | -1.69E-46 |
| MS.gene054658 | MS.gene56227 | 0.813859 | 2.07E-51 | -1.69E-46 |
| MS.gene054775 | MS.gene56227 | 0.802643 | 5.09E-49 | -1.69E-46 |
| MS.gene054994 | MS.gene56227 | 0.803974 | 2.70E-49 | -1.69E-46 |
| MS.gene05510 | MS.gene56227 | 0.841515 | 4.54E-58 | -1.69E-46 |
| MS.gene05517 | MS.gene56227 | 0.805657 | 1.20E-49 | -1.69E-46 |
| MS.gene055222 | MS.gene56227 | 0.842097 | 3.18E-58 | -1.69E-46 |
| MS.gene055512 | MS.gene56227 | 0.805924 | 1.06E-49 | -1.69E-46 |
| MS.gene055623 | MS.gene56227 | 0.815107 | 1.10E-51 | -1.69E-46 |
| MS.gene055701 | MS.gene56227 | 0.840244 | 9.77E-58 | -1.69E-46 |
| MS.gene055778 | MS.gene56227 | 0.812192 | 4.80E-51 | -1.69E-46 |
| MS.gene055818 | MS.gene56227 | 0.804072 | 2.57E-49 | -1.69E-46 |
| MS.gene055841 | MS.gene56227 | 0.814676 | 1.36E-51 | -1.69E-46 |
| MS.gene055926 | MS.gene56227 | 0.826873 | 2.14E-54 | -1.69E-46 |
| MS.gene056162 | MS.gene56227 | 0.836608 | 8.47E-57 | -1.69E-46 |
| MS.gene056174 | MS.gene56227 | 0.832648 | 8.39E-56 | -1.69E-46 |
| MS.gene056480 | MS.gene56227 | 0.803827 | 2.90E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene56227 | 0.84218 | 3.03E-58 | -1.69E-46 |
| MS.gene056776 | MS.gene56227 | 0.810271 | 1.25E-50 | -1.69E-46 |
| MS.gene056973 | MS.gene56227 | 0.807495 | 4.91E-50 | -1.69E-46 |
| MS.gene057060 | MS.gene56227 | 0.811311 | 7.46E-51 | -1.69E-46 |
| MS.gene057200 | MS.gene56227 | 0.8021 | 6.58E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene56227 | 0.814153 | 1.78E-51 | -1.69E-46 |
| MS.gene057444 | MS.gene56227 | 0.833963 | 3.94E-56 | -1.69E-46 |
| MS.gene05761 | MS.gene56227 | 0.815812 | 7.63E-52 | -1.69E-46 |
| MS.gene057693 | MS.gene56227 | 0.83516 | 1.97E-56 | -1.69E-46 |
| MS.gene057869 | MS.gene56227 | 0.828308 | 9.66E-55 | -1.69E-46 |
| MS.gene057915 | MS.gene56227 | 0.815656 | 8.27E-52 | -1.69E-46 |
| MS.gene05795 | MS.gene56227 | 0.818798 | 1.62E-52 | -1.69E-46 |
| MS.gene058010 | MS.gene56227 | 0.808462 | 3.06E-50 | -1.69E-46 |
| MS.gene058126 | MS.gene56227 | 0.821093 | 4.85E-53 | -1.69E-46 |
| MS.gene058146 | MS.gene56227 | 0.853044 | 3.10E-61 | -1.69E-46 |
| MS.gene058548 | MS.gene56227 | 0.837443 | 5.18E-57 | -1.69E-46 |
| MS.gene058549 | MS.gene56227 | 0.81471 | 1.34E-51 | -1.69E-46 |
| MS.gene058595 | MS.gene56227 | 0.833863 | 4.18E-56 | -1.69E-46 |
| MS.gene058979 | MS.gene56227 | 0.841437 | 4.75E-58 | -1.69E-46 |
| MS.gene05897 | MS.gene56227 | 0.805806 | 1.12E-49 | -1.69E-46 |
| MS.gene059161 | MS.gene56227 | 0.826773 | 2.26E-54 | -1.69E-46 |
| MS.gene059382 | MS.gene56227 | 0.804316 | 2.29E-49 | -1.69E-46 |
| MS.gene05979 | MS.gene56227 | 0.830609 | 2.67E-55 | -1.69E-46 |
| MS.gene059842 | MS.gene56227 | 0.837001 | 6.72E-57 | -1.69E-46 |
| MS.gene060011 | MS.gene56227 | 0.836679 | 8.12E-57 | -1.69E-46 |
| MS.gene060167 | MS.gene56227 | 0.8033 | 3.72E-49 | -1.69E-46 |
| MS.gene060310 | MS.gene56227 | 0.83468 | 2.61E-56 | -1.69E-46 |
| MS.gene060322 | MS.gene56227 | 0.843323 | 1.50E-58 | -1.69E-46 |
| MS.gene06052 | MS.gene56227 | 0.813178 | 2.92E-51 | -1.69E-46 |
| MS.gene060683 | MS.gene56227 | 0.824558 | 7.57E-54 | -1.69E-46 |
| MS.gene060685 | MS.gene56227 | 0.822954 | 1.80E-53 | -1.69E-46 |
| MS.gene060802 | MS.gene56227 | 0.85969 | 3.47E-63 | -1.69E-46 |
| MS.gene060803 | MS.gene56227 | 0.83149 | 1.62E-55 | -1.69E-46 |
| MS.gene060918 | MS.gene56227 | 0.823868 | 1.10E-53 | -1.69E-46 |
| MS.gene060998 | MS.gene56227 | 0.83976 | 1.31E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56227.t1 | MTR_3g408430 | 97.713 | 481 | 11 | 0 | 1 | 481 | 1 | 481 | 0.0 | 954 |
| MS.gene56227.t1 | MTR_4g036815 | 67.312 | 465 | 134 | 7 | 26 | 479 | 37 | 494 | 0.0 | 614 |
| MS.gene56227.t1 | MTR_4g013255 | 29.297 | 256 | 170 | 6 | 198 | 449 | 321 | 569 | 1.23e-16 | 83.2 |
| MS.gene56227.t1 | MTR_2g021030 | 29.851 | 268 | 168 | 12 | 176 | 432 | 258 | 516 | 2.98e-16 | 82.0 |
| MS.gene56227.t1 | MTR_2g021030 | 28.792 | 389 | 245 | 16 | 64 | 432 | 11 | 387 | 1.98e-15 | 79.3 |
| MS.gene56227.t1 | MTR_2g021030 | 30.418 | 263 | 150 | 10 | 176 | 420 | 335 | 582 | 1.13e-12 | 70.5 |
| MS.gene56227.t1 | MTR_2g021030 | 28.792 | 389 | 245 | 16 | 64 | 432 | 11 | 387 | 6.36e-16 | 80.5 |
| MS.gene56227.t1 | MTR_2g021030 | 29.048 | 210 | 109 | 9 | 176 | 377 | 258 | 435 | 1.86e-12 | 69.7 |
| MS.gene56227.t1 | MTR_1g114610 | 25.117 | 426 | 250 | 17 | 47 | 438 | 3 | 393 | 5.21e-15 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56227.t1 | AT5G07670 | 55.579 | 484 | 191 | 9 | 9 | 479 | 4 | 476 | 1.77e-172 | 494 |
| MS.gene56227.t1 | AT5G51380 | 54.393 | 478 | 200 | 6 | 12 | 477 | 6 | 477 | 4.06e-160 | 462 |
| MS.gene56227.t1 | AT5G51370 | 56.235 | 409 | 171 | 4 | 71 | 477 | 39 | 441 | 4.79e-146 | 425 |
| MS.gene56227.t1 | AT5G51370 | 54.799 | 323 | 138 | 4 | 71 | 391 | 39 | 355 | 1.19e-105 | 319 |
| MS.gene56227.t1 | AT4G15475 | 26.463 | 393 | 251 | 14 | 64 | 433 | 11 | 388 | 2.96e-16 | 82.0 |
| MS.gene56227.t1 | AT4G15475 | 27.068 | 266 | 178 | 10 | 176 | 432 | 258 | 516 | 5.13e-14 | 75.1 |
| MS.gene56227.t1 | AT5G23340 | 24.069 | 403 | 248 | 15 | 64 | 438 | 10 | 382 | 8.85e-12 | 67.4 |
Find 116 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCAAGTGGTGAAGTTAAT+TGG | 0.177402 | 3.3:+4205775 | MS.gene56227:CDS |
| AAGAAGAGTTAGGTCGAAAT+TGG | 0.226576 | 3.3:-4205242 | None:intergenic |
| AATGGCGGAGAAGTGAAATT+AGG | 0.241231 | 3.3:-4205115 | None:intergenic |
| GAAATTGGGGATTAGGGTTT+TGG | 0.254582 | 3.3:-4205227 | None:intergenic |
| GTTGAAGGATTCAGTGGTTT+TGG | 0.265713 | 3.3:-4205158 | None:intergenic |
| TGCTAAGGAGATTGTTCTTC+AGG | 0.266354 | 3.3:+4206176 | MS.gene56227:CDS |
| TTAGGTCGAAATTGGGGATT+AGG | 0.269142 | 3.3:-4205234 | None:intergenic |
| GTGTAAGAGGTTAGTGAAAT+TGG | 0.269764 | 3.3:+4205861 | MS.gene56227:CDS |
| AAATCAACATGTGTAAGATT+TGG | 0.275991 | 3.3:-4205433 | None:intergenic |
| TCCTGGATTGGAGGAACATT+TGG | 0.280302 | 3.3:+4206062 | MS.gene56227:CDS |
| CAAAAGGGTGTCCGAATTTA+CGG | 0.281538 | 3.3:+4205623 | MS.gene56227:CDS |
| GAATCTGTGGTTTCGGATAT+TGG | 0.301458 | 3.3:+4205817 | MS.gene56227:CDS |
| CTCTTTGAGCGTGGTAAATA+AGG | 0.302598 | 3.3:-4207601 | None:intergenic |
| GATTGTTCTTCAGGATTGTT+GGG | 0.305740 | 3.3:+4206185 | MS.gene56227:CDS |
| TCGGTTTGGCTGTTGTTTGC+AGG | 0.308503 | 3.3:+4206226 | MS.gene56227:CDS |
| CCTGGATTGGAGGAACATTT+GGG | 0.325022 | 3.3:+4206063 | MS.gene56227:CDS |
| AAGAGGGGTTGGTTAGTATT+GGG | 0.332818 | 3.3:+4205671 | MS.gene56227:CDS |
| ACCTTCAACTTCCGTAAATT+CGG | 0.341087 | 3.3:-4205634 | None:intergenic |
| ATTTGATTTGGATTGTGAAT+TGG | 0.344304 | 3.3:-4205305 | None:intergenic |
| GGAAACGAGGGAATTTGATT+TGG | 0.345007 | 3.3:-4205317 | None:intergenic |
| TTACGGAAGTTGAAGGTAAC+AGG | 0.349257 | 3.3:+4205640 | MS.gene56227:CDS |
| TCTTCAGGATTGTTGGGGTT+TGG | 0.356666 | 3.3:+4206191 | MS.gene56227:CDS |
| TTTGATTTGGATTGTGAATT+GGG | 0.360643 | 3.3:-4205304 | None:intergenic |
| TGCAAGTGGTGAAGTTAATT+GGG | 0.361268 | 3.3:+4205776 | MS.gene56227:CDS |
| TTTACTTCCCCAAGACTTGA+TGG | 0.362895 | 3.3:-4207657 | None:intergenic |
| AATCAACATGTGTAAGATTT+GGG | 0.364502 | 3.3:-4205432 | None:intergenic |
| TAGGTCGAAATTGGGGATTA+GGG | 0.366798 | 3.3:-4205233 | None:intergenic |
| ATGGCGGAGAAGTGAAATTA+GGG | 0.373028 | 3.3:-4205114 | None:intergenic |
| AGAAGAGTTAGGTCGAAATT+GGG | 0.375966 | 3.3:-4205241 | None:intergenic |
| TTGTTTGATGTTGGAAGAAT+TGG | 0.379035 | 3.3:+4205936 | MS.gene56227:CDS |
| ATCTTCTACCATCAAGTCTT+GGG | 0.380546 | 3.3:+4207649 | MS.gene56227:CDS |
| GTGAGAATTTGAAGACTTTG+AGG | 0.383908 | 3.3:+4206010 | MS.gene56227:CDS |
| GATTGTTGGGGTTTGGATGA+TGG | 0.388439 | 3.3:+4206198 | MS.gene56227:CDS |
| AAGTTAATTGGGAGTGTTGA+TGG | 0.389086 | 3.3:+4205787 | MS.gene56227:CDS |
| AATCTGTGGTTTCGGATATT+GGG | 0.393863 | 3.3:+4205818 | MS.gene56227:CDS |
| AGATTGTTCTTCAGGATTGT+TGG | 0.399277 | 3.3:+4206184 | MS.gene56227:CDS |
| GTAACAGGAGGGAGTGAAGA+GGG | 0.401924 | 3.3:+4205655 | MS.gene56227:CDS |
| GTAAATAAGGTCGCGAGTGC+AGG | 0.404428 | 3.3:-4207588 | None:intergenic |
| CCCTTATCAATTGCTTCAAC+CGG | 0.408922 | 3.3:-4205586 | None:intergenic |
| GTTGATACAGAGTGGTGTTT+CGG | 0.411076 | 3.3:+4205529 | MS.gene56227:CDS |
| TTGAAGATTCAACCACCGTT+TGG | 0.412707 | 3.3:-4205338 | None:intergenic |
| GTGTCTTGTAAGGTGATTGA+TGG | 0.412926 | 3.3:+4206036 | MS.gene56227:CDS |
| CCACGCTCAAAGAGTTGAAA+TGG | 0.413963 | 3.3:+4207610 | MS.gene56227:CDS |
| ACCGGTTGAAGCAATTGATA+AGG | 0.414611 | 3.3:+4205585 | MS.gene56227:CDS |
| GTGTGTTACATTGATGGAAT+TGG | 0.414955 | 3.3:+4205699 | MS.gene56227:CDS |
| TCGATGGGATTAAAGCGATT+GGG | 0.422490 | 3.3:+4205908 | MS.gene56227:CDS |
| CGTCGGAAAGAAGAAGAGTT+AGG | 0.425255 | 3.3:-4205252 | None:intergenic |
| GTAAAACTGTTTGACATAGA+AGG | 0.427093 | 3.3:+4207456 | MS.gene56227:CDS |
| CCGGTTGAAGCAATTGATAA+GGG | 0.433487 | 3.3:+4205586 | MS.gene56227:CDS |
| CATCTTCTACCATCAAGTCT+TGG | 0.441016 | 3.3:+4207648 | MS.gene56227:CDS |
| GGAAGAGTGTGTTACATTGA+TGG | 0.441311 | 3.3:+4205693 | MS.gene56227:CDS |
| GGTAACAGGAGGGAGTGAAG+AGG | 0.442406 | 3.3:+4205654 | MS.gene56227:CDS |
| GGATTGTGAATTGGGAAGCT+TGG | 0.445784 | 3.3:-4205296 | None:intergenic |
| AGGAGGGAGTGAAGAGGGGT+TGG | 0.451167 | 3.3:+4205660 | MS.gene56227:CDS |
| TTTGAGGTTTGTGTCTTGTA+AGG | 0.453944 | 3.3:+4206026 | MS.gene56227:CDS |
| GAAGAGGGGTTGGTTAGTAT+TGG | 0.456537 | 3.3:+4205670 | MS.gene56227:CDS |
| TTCGATGGGATTAAAGCGAT+TGG | 0.456566 | 3.3:+4205907 | MS.gene56227:CDS |
| CACTGAATCCTTCAACCATA+TGG | 0.456874 | 3.3:+4205165 | MS.gene56227:CDS |
| AAACGGTGGTTGAATCTTCA+AGG | 0.463488 | 3.3:+4205340 | MS.gene56227:CDS |
| ATGGATGATGGATGGTTAGC+TGG | 0.465814 | 3.3:+4205976 | MS.gene56227:CDS |
| TTCAACAAGGTCTTCTTCAA+TGG | 0.466958 | 3.3:-4205133 | None:intergenic |
| AAGGTGATTGATGGTAATCC+TGG | 0.473788 | 3.3:+4206045 | MS.gene56227:CDS |
| TTCGGTTTGTAGAGTTGCTA+AGG | 0.478037 | 3.3:+4206161 | MS.gene56227:CDS |
| AATCACTGACTCTAAACCTT+CGG | 0.480906 | 3.3:-4207496 | None:intergenic |
| TTGGAGCTTGTTGGTTGTGA+AGG | 0.486017 | 3.3:+4205880 | MS.gene56227:CDS |
| CCCAAATGTTCCTCCAATCC+AGG | 0.488453 | 3.3:-4206063 | None:intergenic |
| GGCGAGGACCATATGGTTGA+AGG | 0.492096 | 3.3:-4205173 | None:intergenic |
| GGTTGTGAAGGGAGTTTCGA+TGG | 0.492372 | 3.3:+4205892 | MS.gene56227:CDS |
| TCCGAATTTACGGAAGTTGA+AGG | 0.507512 | 3.3:+4205633 | MS.gene56227:CDS |
| GTTGTGAAGGGAGTTTCGAT+GGG | 0.515606 | 3.3:+4205893 | MS.gene56227:CDS |
| GGGTTGAAAGAAGTTGCAAA+AGG | 0.515791 | 3.3:+4205607 | MS.gene56227:CDS |
| GTTGATCATAGGATGGATGA+TGG | 0.516780 | 3.3:+4205964 | MS.gene56227:CDS |
| TAGAGTCAGTGATTGAATCA+TGG | 0.519512 | 3.3:+4207505 | MS.gene56227:CDS |
| TAACAGGAGGGAGTGAAGAG+GGG | 0.519826 | 3.3:+4205656 | MS.gene56227:CDS |
| GGATGAACAACGAAAGTTGA+AGG | 0.519861 | 3.3:-4205460 | None:intergenic |
| TTCGTTGTTCATCCTCAAAA+CGG | 0.520700 | 3.3:+4205469 | MS.gene56227:CDS |
| CAAATTCCCTCGTTTCCAAA+CGG | 0.525934 | 3.3:+4205323 | MS.gene56227:CDS |
| GTTGCATGGCGAGGACCATA+TGG | 0.527794 | 3.3:-4205180 | None:intergenic |
| TGCTCGTTGCTTACAACCGA+AGG | 0.529914 | 3.3:+4207480 | MS.gene56227:CDS |
| GAAGAGTTAGGTCGAAATTG+GGG | 0.532050 | 3.3:-4205240 | None:intergenic |
| AGTTAATTGGGAGTGTTGAT+GGG | 0.532541 | 3.3:+4205788 | MS.gene56227:CDS |
| CGATGGGATTAAAGCGATTG+GGG | 0.546488 | 3.3:+4205909 | MS.gene56227:CDS |
| TTAGTGAAATTGGAGCTTGT+TGG | 0.552579 | 3.3:+4205871 | MS.gene56227:CDS |
| TGGAGCTTGTTGGTTGTGAA+GGG | 0.553189 | 3.3:+4205881 | MS.gene56227:CDS |
| AAGTCTTGGGGAAGTAAACA+TGG | 0.554246 | 3.3:+4207662 | MS.gene56227:CDS |
| GGTTGAAAGAAGTTGCAAAA+GGG | 0.557299 | 3.3:+4205608 | MS.gene56227:CDS |
| AGAGGGGTTGGTTAGTATTG+GGG | 0.557469 | 3.3:+4205672 | MS.gene56227:CDS |
| CATATGGTTGAAGGATTCAG+TGG | 0.559001 | 3.3:-4205164 | None:intergenic |
| TGGGGCGTGTTGTTTGATGT+TGG | 0.560180 | 3.3:+4205927 | MS.gene56227:CDS |
| ACACCGTGTAGTTTCAATGC+GGG | 0.569721 | 3.3:+4205507 | MS.gene56227:CDS |
| CGGTTGAAGCAATTGATAAG+GGG | 0.571061 | 3.3:+4205587 | MS.gene56227:CDS |
| GATTGATGGTAATCCTGGAT+TGG | 0.572712 | 3.3:+4206050 | MS.gene56227:CDS |
| TCAACCACCGTTTGGAAACG+AGG | 0.579645 | 3.3:-4205330 | None:intergenic |
| AACAAGGTCTTCTTCAATGG+CGG | 0.590858 | 3.3:-4205130 | None:intergenic |
| ATTGTTCTTCAGGATTGTTG+GGG | 0.598171 | 3.3:+4206186 | MS.gene56227:CDS |
| GTCAGTGATTGAATCATGGA+AGG | 0.600567 | 3.3:+4207509 | MS.gene56227:CDS |
| GGTGGTTGAATCTTCAAGGA+AGG | 0.602912 | 3.3:+4205344 | MS.gene56227:CDS |
| CTGGATTGGAGGAACATTTG+GGG | 0.607991 | 3.3:+4206064 | MS.gene56227:CDS |
| ATTCCCTCGTTTCCAAACGG+TGG | 0.609324 | 3.3:+4205326 | MS.gene56227:CDS |
| CCATTTCAACTCTTTGAGCG+TGG | 0.617349 | 3.3:-4207610 | None:intergenic |
| ATTAAGGGATAAGAATGCAA+TGG | 0.617677 | 3.3:+4206128 | MS.gene56227:CDS |
| CGCTCAAAGAGTTGAAATGG+AGG | 0.618945 | 3.3:+4207613 | MS.gene56227:CDS |
| AGTGAGAGAGTGAAGTTGCA+TGG | 0.621452 | 3.3:-4205194 | None:intergenic |
| GAGAGTGAAGTTGCATGGCG+AGG | 0.626514 | 3.3:-4205189 | None:intergenic |
| ATCATAGGATGGATGATGGA+TGG | 0.627721 | 3.3:+4205968 | MS.gene56227:CDS |
| CGGAAGTTGAAGGTAACAGG+AGG | 0.640997 | 3.3:+4205643 | MS.gene56227:CDS |
| AGTCTTGGGGAAGTAAACAT+GGG | 0.645641 | 3.3:+4207663 | MS.gene56227:CDS |
| TCTTCTACCATCAAGTCTTG+GGG | 0.646441 | 3.3:+4207650 | MS.gene56227:CDS |
| TGATGGTAATCCTGGATTGG+AGG | 0.660453 | 3.3:+4206053 | MS.gene56227:CDS |
| CAACCCGCATTGAAACTACA+CGG | 0.664117 | 3.3:-4205510 | None:intergenic |
| CAACCACCGTTTGGAAACGA+GGG | 0.666778 | 3.3:-4205329 | None:intergenic |
| GGCGTGTAAGAATTTGCAAG+TGG | 0.687214 | 3.3:+4205762 | MS.gene56227:CDS |
| GTCTTGGGGAAGTAAACATG+GGG | 0.687581 | 3.3:+4207664 | MS.gene56227:CDS |
| GGAAGTTGAAGGTAACAGGA+GGG | 0.698564 | 3.3:+4205644 | MS.gene56227:CDS |
| CAATGCGGGTTGATACAGAG+TGG | 0.708252 | 3.3:+4205521 | MS.gene56227:CDS |
| CACACCGTGTAGTTTCAATG+CGG | 0.714030 | 3.3:+4205506 | MS.gene56227:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAAAATAAGTTTAGTA+TGG | - | chr3.3:4206898-4206917 | None:intergenic | 10.0% |
| !!! | TGTGTTTTATTGTATAATAT+TGG | + | chr3.3:4207113-4207132 | MS.gene56227:intron | 15.0% |
| !! | AAAATGTTAAAATCATGTTG+TGG | + | chr3.3:4207279-4207298 | MS.gene56227:intron | 20.0% |
| !! | ACTAATTATGAGTTACTTAA+TGG | + | chr3.3:4207403-4207422 | MS.gene56227:intron | 20.0% |
| !! | TGTCTCTTGTAAAAATATAA+AGG | + | chr3.3:4207551-4207570 | MS.gene56227:CDS | 20.0% |
| !!! | ATTTATTGATTATGCTCAAA+TGG | + | chr3.3:4206929-4206948 | MS.gene56227:intron | 20.0% |
| !!! | GTGTTATTGAAATTTTGAAT+TGG | + | chr3.3:4206257-4206276 | MS.gene56227:intron | 20.0% |
| !!! | TCTAGCTTGTATTTATTTAT+TGG | + | chr3.3:4206342-4206361 | MS.gene56227:intron | 20.0% |
| !!! | TTTATTGATTATGCTCAAAT+GGG | + | chr3.3:4206930-4206949 | MS.gene56227:intron | 20.0% |
| !!! | TTTGTATTTGAAACGTAAAT+CGG | + | chr3.3:4206583-4206602 | MS.gene56227:intron | 20.0% |
| ! | AAATATCAATAGAGTTCCTT+AGG | - | chr3.3:4206705-4206724 | None:intergenic | 25.0% |
| ! | AAATCAACATGTGTAAGATT+TGG | - | chr3.3:4205436-4205455 | None:intergenic | 25.0% |
| ! | AATCAACATGTGTAAGATTT+GGG | - | chr3.3:4205435-4205454 | None:intergenic | 25.0% |
| ! | ATACAAACTTGGATTATGTT+AGG | - | chr3.3:4206570-4206589 | None:intergenic | 25.0% |
| ! | TTACGTTTCAAATACAAACT+TGG | - | chr3.3:4206581-4206600 | None:intergenic | 25.0% |
| !! | ATTTTCAGAGATGTCAATTA+AGG | + | chr3.3:4206112-4206131 | MS.gene56227:CDS | 25.0% |
| !! | TTTTCAGAGATGTCAATTAA+GGG | + | chr3.3:4206113-4206132 | MS.gene56227:CDS | 25.0% |
| !!! | AATTGGTTTTTGTTGATCAT+AGG | + | chr3.3:4205953-4205972 | MS.gene56227:CDS | 25.0% |
| !!! | ATTTGATTTGGATTGTGAAT+TGG | - | chr3.3:4205308-4205327 | None:intergenic | 25.0% |
| !!! | TTTGATTTGGATTGTGAATT+GGG | - | chr3.3:4205307-4205326 | None:intergenic | 25.0% |
| !!! | TTTGTTTCTAATTGCATGTT+CGG | - | chr3.3:4206767-4206786 | None:intergenic | 25.0% |
| AAATCGGAATATGAATTGGA+AGG | + | chr3.3:4206599-4206618 | MS.gene56227:intron | 30.0% | |
| ACGTAAATCGGAATATGAAT+TGG | + | chr3.3:4206595-4206614 | MS.gene56227:intron | 30.0% | |
| ATGTTGTGGCAAATGTTTAA+AGG | + | chr3.3:4207293-4207312 | MS.gene56227:intron | 30.0% | |
| ATTAAGGGATAAGAATGCAA+TGG | + | chr3.3:4206128-4206147 | MS.gene56227:CDS | 30.0% | |
| ATTTATTGGTCCATTCACAT+TGG | + | chr3.3:4206356-4206375 | MS.gene56227:intron | 30.0% | |
| CAGATAGATTGTAATCTGTT+AGG | + | chr3.3:4206441-4206460 | MS.gene56227:intron | 30.0% | |
| GCAATAGAAAAGCAATTAGA+CGG | - | chr3.3:4207003-4207022 | None:intergenic | 30.0% | |
| GTAAAACTGTTTGACATAGA+AGG | + | chr3.3:4207456-4207475 | MS.gene56227:CDS | 30.0% | |
| TGTGCAAAGAGAAACTTTAA+AGG | + | chr3.3:4206805-4206824 | MS.gene56227:intron | 30.0% | |
| TTGTTTGATGTTGGAAGAAT+TGG | + | chr3.3:4205936-4205955 | MS.gene56227:CDS | 30.0% | |
| ! | AGGAATATGAGTTGTGATTT+TGG | + | chr3.3:4206619-4206638 | MS.gene56227:intron | 30.0% |
| ! | GATTTGAACTTCGTTTTATC+AGG | + | chr3.3:4205391-4205410 | MS.gene56227:CDS | 30.0% |
| ! | GTTTTATGAATCTGTGGTTT+CGG | + | chr3.3:4205810-4205829 | MS.gene56227:CDS | 30.0% |
| ! | TATTGTTGTTAGCATGTCTT+TGG | + | chr3.3:4206403-4206422 | MS.gene56227:intron | 30.0% |
| ! | TTTTACAAGAGACAACTCTA+AGG | - | chr3.3:4207545-4207564 | None:intergenic | 30.0% |
| !! | AATTTTGAGGAGAATTTCGT+CGG | - | chr3.3:4205272-4205291 | None:intergenic | 30.0% |
| !! | AGTTGTGATTTTGGTCTAAT+GGG | + | chr3.3:4206628-4206647 | MS.gene56227:intron | 30.0% |
| !! | GAAAGGGAAAAATTTGTTAC+CGG | + | chr3.3:4205567-4205586 | MS.gene56227:CDS | 30.0% |
| !! | GTACATAAAAGTACTCAATG+TGG | - | chr3.3:4206538-4206557 | None:intergenic | 30.0% |
| !!! | GGTTTTTGTTGTTGTTTTTG+TGG | - | chr3.3:4205096-4205115 | None:intergenic | 30.0% |
| !!! | TTGTTGTTGTTTTTGTGGAA+GGG | - | chr3.3:4205091-4205110 | None:intergenic | 30.0% |
| !!! | TTTGTTGTTGTTTTTGTGGA+AGG | - | chr3.3:4205092-4205111 | None:intergenic | 30.0% |
| AAGAAGAGTTAGGTCGAAAT+TGG | - | chr3.3:4205245-4205264 | None:intergenic | 35.0% | |
| AATCTGTGGTTTCGGATATT+GGG | + | chr3.3:4205818-4205837 | MS.gene56227:CDS | 35.0% | |
| ACCTTCAACTTCCGTAAATT+CGG | - | chr3.3:4205637-4205656 | None:intergenic | 35.0% | |
| AGAAGAGTTAGGTCGAAATT+GGG | - | chr3.3:4205244-4205263 | None:intergenic | 35.0% | |
| AGATTGTTCTTCAGGATTGT+TGG | + | chr3.3:4206184-4206203 | MS.gene56227:CDS | 35.0% | |
| AGTACTCAATGTGGTACTTA+AGG | - | chr3.3:4206529-4206548 | None:intergenic | 35.0% | |
| ATCTTCTACCATCAAGTCTT+GGG | + | chr3.3:4207649-4207668 | MS.gene56227:CDS | 35.0% | |
| ATTGTTCTTCAGGATTGTTG+GGG | + | chr3.3:4206186-4206205 | MS.gene56227:CDS | 35.0% | |
| CAAATGTTTAAAGGTGGTTG+TGG | + | chr3.3:4207302-4207321 | MS.gene56227:intron | 35.0% | |
| GAAGTAAACATGGGGAAAAA+AGG | + | chr3.3:4207672-4207691 | MS.gene56227:CDS | 35.0% | |
| GATTGTTCTTCAGGATTGTT+GGG | + | chr3.3:4206185-4206204 | MS.gene56227:CDS | 35.0% | |
| GGTTGAAAGAAGTTGCAAAA+GGG | + | chr3.3:4205608-4205627 | MS.gene56227:CDS | 35.0% | |
| GTGAGAATTTGAAGACTTTG+AGG | + | chr3.3:4206010-4206029 | MS.gene56227:CDS | 35.0% | |
| GTGTAAGAGGTTAGTGAAAT+TGG | + | chr3.3:4205861-4205880 | MS.gene56227:CDS | 35.0% | |
| GTGTGTTACATTGATGGAAT+TGG | + | chr3.3:4205699-4205718 | MS.gene56227:CDS | 35.0% | |
| TAGAGTCAGTGATTGAATCA+TGG | + | chr3.3:4207505-4207524 | MS.gene56227:CDS | 35.0% | |
| TCTTTGCACATGCAAACTAA+GGG | - | chr3.3:4206795-4206814 | None:intergenic | 35.0% | |
| TGCAAGTGGTGAAGTTAATT+GGG | + | chr3.3:4205776-4205795 | MS.gene56227:CDS | 35.0% | |
| TTAGTGAAATTGGAGCTTGT+TGG | + | chr3.3:4205871-4205890 | MS.gene56227:CDS | 35.0% | |
| TTCAACAAGGTCTTCTTCAA+TGG | - | chr3.3:4205136-4205155 | None:intergenic | 35.0% | |
| TTCGTTGTTCATCCTCAAAA+CGG | + | chr3.3:4205469-4205488 | MS.gene56227:CDS | 35.0% | |
| TTGCAAGTGGTGAAGTTAAT+TGG | + | chr3.3:4205775-4205794 | MS.gene56227:CDS | 35.0% | |
| TTGTGGCAAATGTTTAAAGG+TGG | + | chr3.3:4207296-4207315 | MS.gene56227:intron | 35.0% | |
| ! | ACGTGTTTTTCCAATGTGAA+TGG | - | chr3.3:4206369-4206388 | None:intergenic | 35.0% |
| ! | GGTAGAAGATGTTTTGTATC+TGG | - | chr3.3:4207639-4207658 | None:intergenic | 35.0% |
| ! | GGTTTTTGTTGATCATAGGA+TGG | + | chr3.3:4205957-4205976 | MS.gene56227:CDS | 35.0% |
| ! | TGAACTTCGTTTTATCAGGT+AGG | + | chr3.3:4205395-4205414 | MS.gene56227:CDS | 35.0% |
| ! | TGTAATGACGATGTTTTACG+TGG | + | chr3.3:4205733-4205752 | MS.gene56227:CDS | 35.0% |
| ! | TGTTGCTCTGATTCATTTTC+AGG | + | chr3.3:4207430-4207449 | MS.gene56227:intron | 35.0% |
| ! | TTTGAGGTTTGTGTCTTGTA+AGG | + | chr3.3:4206026-4206045 | MS.gene56227:CDS | 35.0% |
| !! | AAGTTAATTGGGAGTGTTGA+TGG | + | chr3.3:4205787-4205806 | MS.gene56227:CDS | 35.0% |
| !! | AATCACTGACTCTAAACCTT+CGG | - | chr3.3:4207499-4207518 | None:intergenic | 35.0% |
| !! | AGTTAATTGGGAGTGTTGAT+GGG | + | chr3.3:4205788-4205807 | MS.gene56227:CDS | 35.0% |
| !! | CTTTGTTGTTGTTGTTGTTG+TGG | + | chr3.3:4207024-4207043 | MS.gene56227:intron | 35.0% |
| !! | GAGTTGTGATTTTGGTCTAA+TGG | + | chr3.3:4206627-4206646 | MS.gene56227:intron | 35.0% |
| !!! | AAGGCGGTAAATTTTTCAAG+TGG | + | chr3.3:4207691-4207710 | MS.gene56227:CDS | 35.0% |
| !!! | ACCTAATGGACTAGTCTTTT+GGG | - | chr3.3:4206492-4206511 | None:intergenic | 35.0% |
| !!! | GGTTGACTATTTTAGCTCAA+GGG | + | chr3.3:4205839-4205858 | MS.gene56227:CDS | 35.0% |
| !!! | TGATGGGTTTTATGAATCTG+TGG | + | chr3.3:4205804-4205823 | MS.gene56227:CDS | 35.0% |
| AAACGGTGGTTGAATCTTCA+AGG | + | chr3.3:4205340-4205359 | MS.gene56227:CDS | 40.0% | |
| AACAAGGTCTTCTTCAATGG+CGG | - | chr3.3:4205133-4205152 | None:intergenic | 40.0% | |
| AAGTCTTGGGGAAGTAAACA+TGG | + | chr3.3:4207662-4207681 | MS.gene56227:CDS | 40.0% | |
| AATGGGAAAGTCATGCTTAC+TGG | + | chr3.3:4206645-4206664 | MS.gene56227:intron | 40.0% | |
| AATGTGGTACTTAAGGCATG+CGG | - | chr3.3:4206522-4206541 | None:intergenic | 40.0% | |
| ACCGGTTGAAGCAATTGATA+AGG | + | chr3.3:4205585-4205604 | MS.gene56227:CDS | 40.0% | |
| AGTCTTGGGGAAGTAAACAT+GGG | + | chr3.3:4207663-4207682 | MS.gene56227:CDS | 40.0% | |
| CAAATTCCCTCGTTTCCAAA+CGG | + | chr3.3:4205323-4205342 | MS.gene56227:CDS | 40.0% | |
| CACTGAATCCTTCAACCATA+TGG | + | chr3.3:4205165-4205184 | MS.gene56227:CDS | 40.0% | |
| CATATGGTTGAAGGATTCAG+TGG | - | chr3.3:4205167-4205186 | None:intergenic | 40.0% | |
| CATCTTCTACCATCAAGTCT+TGG | + | chr3.3:4207648-4207667 | MS.gene56227:CDS | 40.0% | |
| CCCTTATCAATTGCTTCAAC+CGG | - | chr3.3:4205589-4205608 | None:intergenic | 40.0% | |
| CCGGTTGAAGCAATTGATAA+GGG | + | chr3.3:4205586-4205605 | MS.gene56227:CDS | 40.0% | |
| CGGTTGAAGCAATTGATAAG+GGG | + | chr3.3:4205587-4205606 | MS.gene56227:CDS | 40.0% | |
| CTCTTTGAGCGTGGTAAATA+AGG | - | chr3.3:4207604-4207623 | None:intergenic | 40.0% | |
| CTCTTTGCACATGCAAACTA+AGG | - | chr3.3:4206796-4206815 | None:intergenic | 40.0% | |
| CTTTGCACATGCAAACTAAG+GGG | - | chr3.3:4206794-4206813 | None:intergenic | 40.0% | |
| GAAGAGTTAGGTCGAAATTG+GGG | - | chr3.3:4205243-4205262 | None:intergenic | 40.0% | |
| GAATCTGTGGTTTCGGATAT+TGG | + | chr3.3:4205817-4205836 | MS.gene56227:CDS | 40.0% | |
| GCAAACAACGTAGATTCCTA+AGG | + | chr3.3:4206686-4206705 | MS.gene56227:intron | 40.0% | |
| GGAAACGAGGGAATTTGATT+TGG | - | chr3.3:4205320-4205339 | None:intergenic | 40.0% | |
| GGATGAACAACGAAAGTTGA+AGG | - | chr3.3:4205463-4205482 | None:intergenic | 40.0% | |
| GGGTTGAAAGAAGTTGCAAA+AGG | + | chr3.3:4205607-4205626 | MS.gene56227:CDS | 40.0% | |
| GTAAACATGGGGAAAAAAGG+CGG | + | chr3.3:4207675-4207694 | MS.gene56227:CDS | 40.0% | |
| GTCAGTGATTGAATCATGGA+AGG | + | chr3.3:4207509-4207528 | MS.gene56227:CDS | 40.0% | |
| GTGTCTTGTAAGGTGATTGA+TGG | + | chr3.3:4206036-4206055 | MS.gene56227:CDS | 40.0% | |
| GTTGATACAGAGTGGTGTTT+CGG | + | chr3.3:4205529-4205548 | MS.gene56227:CDS | 40.0% | |
| GTTGATCATAGGATGGATGA+TGG | + | chr3.3:4205964-4205983 | MS.gene56227:CDS | 40.0% | |
| TAGGTCGAAATTGGGGATTA+GGG | - | chr3.3:4205236-4205255 | None:intergenic | 40.0% | |
| TCCGAATTTACGGAAGTTGA+AGG | + | chr3.3:4205633-4205652 | MS.gene56227:CDS | 40.0% | |
| TCGATGGGATTAAAGCGATT+GGG | + | chr3.3:4205908-4205927 | MS.gene56227:CDS | 40.0% | |
| TCTTCTACCATCAAGTCTTG+GGG | + | chr3.3:4207650-4207669 | MS.gene56227:CDS | 40.0% | |
| TGCTAAGGAGATTGTTCTTC+AGG | + | chr3.3:4206176-4206195 | MS.gene56227:CDS | 40.0% | |
| TGTTAGGAGTTAAGCCTATG+AGG | + | chr3.3:4206457-4206476 | MS.gene56227:intron | 40.0% | |
| TTACGGAAGTTGAAGGTAAC+AGG | + | chr3.3:4205640-4205659 | MS.gene56227:CDS | 40.0% | |
| TTAGGTCGAAATTGGGGATT+AGG | - | chr3.3:4205237-4205256 | None:intergenic | 40.0% | |
| TTCGATGGGATTAAAGCGAT+TGG | + | chr3.3:4205907-4205926 | MS.gene56227:CDS | 40.0% | |
| TTGAAGATTCAACCACCGTT+TGG | - | chr3.3:4205341-4205360 | None:intergenic | 40.0% | |
| TTTACTTCCCCAAGACTTGA+TGG | - | chr3.3:4207660-4207679 | None:intergenic | 40.0% | |
| ! | AAGGTGATTGATGGTAATCC+TGG | + | chr3.3:4206045-4206064 | MS.gene56227:CDS | 40.0% |
| ! | AATGGCGGAGAAGTGAAATT+AGG | - | chr3.3:4205118-4205137 | None:intergenic | 40.0% |
| ! | AGAGTGGTGTTTCGGTTTTT+CGG | + | chr3.3:4205537-4205556 | MS.gene56227:CDS | 40.0% |
| ! | ATGAAAGTGTGTCCAATCTC+TGG | + | chr3.3:4207350-4207369 | MS.gene56227:intron | 40.0% |
| ! | ATGGCGGAGAAGTGAAATTA+GGG | - | chr3.3:4205117-4205136 | None:intergenic | 40.0% |
| ! | CTGTTGTTTGCAGGTAATGT+GGG | + | chr3.3:4206235-4206254 | MS.gene56227:intron | 40.0% |
| ! | GAAATTGGGGATTAGGGTTT+TGG | - | chr3.3:4205230-4205249 | None:intergenic | 40.0% |
| ! | GAAGCTTGGAGAGAATTTTG+AGG | - | chr3.3:4205285-4205304 | None:intergenic | 40.0% |
| ! | GATTGATGGTAATCCTGGAT+TGG | + | chr3.3:4206050-4206069 | MS.gene56227:CDS | 40.0% |
| ! | GGAAGAGTGTGTTACATTGA+TGG | + | chr3.3:4205693-4205712 | MS.gene56227:CDS | 40.0% |
| ! | GTTGAAGGATTCAGTGGTTT+TGG | - | chr3.3:4205161-4205180 | None:intergenic | 40.0% |
| ! | TGAAAGTGTGTCCAATCTCT+GGG | + | chr3.3:4207351-4207370 | MS.gene56227:intron | 40.0% |
| ! | TTCGGTTTGTAGAGTTGCTA+AGG | + | chr3.3:4206161-4206180 | MS.gene56227:CDS | 40.0% |
| !! | AAGAGGGGTTGGTTAGTATT+GGG | + | chr3.3:4205671-4205690 | MS.gene56227:CDS | 40.0% |
| !! | ATCATAGGATGGATGATGGA+TGG | + | chr3.3:4205968-4205987 | MS.gene56227:CDS | 40.0% |
| !! | CAAAAGGGTGTCCGAATTTA+CGG | + | chr3.3:4205623-4205642 | MS.gene56227:CDS | 40.0% |
| !! | GTTTTTCGGAGGAAGTGAAA+GGG | + | chr3.3:4205551-4205570 | MS.gene56227:CDS | 40.0% |
| !!! | AGTGGTTTTGGAGTTCAACA+AGG | - | chr3.3:4205149-4205168 | None:intergenic | 40.0% |
| !!! | CACCTAATGGACTAGTCTTT+TGG | - | chr3.3:4206493-4206512 | None:intergenic | 40.0% |
| !!! | GGATTAGGGTTTTGGAATTG+GGG | - | chr3.3:4205222-4205241 | None:intergenic | 40.0% |
| !!! | GGGATTAGGGTTTTGGAATT+GGG | - | chr3.3:4205223-4205242 | None:intergenic | 40.0% |
| !!! | GGGTTGACTATTTTAGCTCA+AGG | + | chr3.3:4205838-4205857 | MS.gene56227:CDS | 40.0% |
| !!! | TGCAATGGCAGCTGTTTTTT+CGG | + | chr3.3:4206143-4206162 | MS.gene56227:CDS | 40.0% |
| !!! | TTTTAGCTCAAGGGTGTAAG+AGG | + | chr3.3:4205848-4205867 | MS.gene56227:CDS | 40.0% |
| AAAGTGTGTCCAATCTCTGG+GGG | + | chr3.3:4207353-4207372 | MS.gene56227:intron | 45.0% | |
| ACACCGTGTAGTTTCAATGC+GGG | + | chr3.3:4205507-4205526 | MS.gene56227:CDS | 45.0% | |
| AGTGAGAGAGTGAAGTTGCA+TGG | - | chr3.3:4205197-4205216 | None:intergenic | 45.0% | |
| CAACCCGCATTGAAACTACA+CGG | - | chr3.3:4205513-4205532 | None:intergenic | 45.0% | |
| CACACCGTGTAGTTTCAATG+CGG | + | chr3.3:4205506-4205525 | MS.gene56227:CDS | 45.0% | |
| CATAAGTAACCCCCAGAGAT+TGG | - | chr3.3:4207365-4207384 | None:intergenic | 45.0% | |
| CCACGCTCAAAGAGTTGAAA+TGG | + | chr3.3:4207610-4207629 | MS.gene56227:CDS | 45.0% | |
| CCATTTCAACTCTTTGAGCG+TGG | - | chr3.3:4207613-4207632 | None:intergenic | 45.0% | |
| CGATGGGATTAAAGCGATTG+GGG | + | chr3.3:4205909-4205928 | MS.gene56227:CDS | 45.0% | |
| CGCTCAAAGAGTTGAAATGG+AGG | + | chr3.3:4207613-4207632 | MS.gene56227:CDS | 45.0% | |
| CGTCGGAAAGAAGAAGAGTT+AGG | - | chr3.3:4205255-4205274 | None:intergenic | 45.0% | |
| GATTGTTGGGGTTTGGATGA+TGG | + | chr3.3:4206198-4206217 | MS.gene56227:CDS | 45.0% | |
| GGAAGTTGAAGGTAACAGGA+GGG | + | chr3.3:4205644-4205663 | MS.gene56227:CDS | 45.0% | |
| GGATTGTGAATTGGGAAGCT+TGG | - | chr3.3:4205299-4205318 | None:intergenic | 45.0% | |
| GGCGTGTAAGAATTTGCAAG+TGG | + | chr3.3:4205762-4205781 | MS.gene56227:CDS | 45.0% | |
| GGTGGTTGAATCTTCAAGGA+AGG | + | chr3.3:4205344-4205363 | MS.gene56227:CDS | 45.0% | |
| GTCTTGGGGAAGTAAACATG+GGG | + | chr3.3:4207664-4207683 | MS.gene56227:CDS | 45.0% | |
| GTTGTGAAGGGAGTTTCGAT+GGG | + | chr3.3:4205893-4205912 | MS.gene56227:CDS | 45.0% | |
| TCTTCAGGATTGTTGGGGTT+TGG | + | chr3.3:4206191-4206210 | MS.gene56227:CDS | 45.0% | |
| TTAAGCCTATGAGGAGAGTC+CGG | + | chr3.3:4206466-4206485 | MS.gene56227:intron | 45.0% | |
| ! | CCTGGATTGGAGGAACATTT+GGG | + | chr3.3:4206063-4206082 | MS.gene56227:CDS | 45.0% |
| ! | CGATGTTTTACGTGGTGTAG+CGG | + | chr3.3:4205741-4205760 | MS.gene56227:CDS | 45.0% |
| ! | CTGGATTGGAGGAACATTTG+GGG | + | chr3.3:4206064-4206083 | MS.gene56227:CDS | 45.0% |
| ! | GAAAGTGTGTCCAATCTCTG+GGG | + | chr3.3:4207352-4207371 | MS.gene56227:intron | 45.0% |
| ! | GCCCAAAAGACTAGTCCATT+AGG | + | chr3.3:4206488-4206507 | MS.gene56227:intron | 45.0% |
| ! | GCTGTTGTTTGCAGGTAATG+TGG | + | chr3.3:4206234-4206253 | MS.gene56227:intron | 45.0% |
| ! | TCCTGGATTGGAGGAACATT+TGG | + | chr3.3:4206062-4206081 | MS.gene56227:CDS | 45.0% |
| ! | TGATGGTAATCCTGGATTGG+AGG | + | chr3.3:4206053-4206072 | MS.gene56227:CDS | 45.0% |
| !! | AGAGGGGTTGGTTAGTATTG+GGG | + | chr3.3:4205672-4205691 | MS.gene56227:CDS | 45.0% |
| !! | ATCAAAACGACGCCGTTTTG+AGG | - | chr3.3:4205484-4205503 | None:intergenic | 45.0% |
| !! | ATGGATGATGGATGGTTAGC+TGG | + | chr3.3:4205976-4205995 | MS.gene56227:CDS | 45.0% |
| !! | GAAGAGGGGTTGGTTAGTAT+TGG | + | chr3.3:4205670-4205689 | MS.gene56227:CDS | 45.0% |
| !! | GGTTTGGATGATGGCGTTTT+CGG | + | chr3.3:4206207-4206226 | MS.gene56227:CDS | 45.0% |
| !! | GGTTTTTCGGAGGAAGTGAA+AGG | + | chr3.3:4205550-4205569 | MS.gene56227:CDS | 45.0% |
| !! | TGGAGCTTGTTGGTTGTGAA+GGG | + | chr3.3:4205881-4205900 | MS.gene56227:CDS | 45.0% |
| !! | TTGGAGCTTGTTGGTTGTGA+AGG | + | chr3.3:4205880-4205899 | MS.gene56227:CDS | 45.0% |
| !!! | AATGGACTAGTCTTTTGGGC+CGG | - | chr3.3:4206488-4206507 | None:intergenic | 45.0% |
| !!! | GGGGATTAGGGTTTTGGAAT+TGG | - | chr3.3:4205224-4205243 | None:intergenic | 45.0% |
| ATTCCCTCGTTTCCAAACGG+TGG | + | chr3.3:4205326-4205345 | MS.gene56227:CDS | 50.0% | |
| CAACCACCGTTTGGAAACGA+GGG | - | chr3.3:4205332-4205351 | None:intergenic | 50.0% | |
| CATGCGGTTCTCTCACCTAA+TGG | - | chr3.3:4206506-4206525 | None:intergenic | 50.0% | |
| CCCAAATGTTCCTCCAATCC+AGG | - | chr3.3:4206066-4206085 | None:intergenic | 50.0% | |
| CGGAAGTTGAAGGTAACAGG+AGG | + | chr3.3:4205643-4205662 | MS.gene56227:CDS | 50.0% | |
| GGTTGTGAAGGGAGTTTCGA+TGG | + | chr3.3:4205892-4205911 | MS.gene56227:CDS | 50.0% | |
| GTAAATAAGGTCGCGAGTGC+AGG | - | chr3.3:4207591-4207610 | None:intergenic | 50.0% | |
| GTAACAGGAGGGAGTGAAGA+GGG | + | chr3.3:4205655-4205674 | MS.gene56227:CDS | 50.0% | |
| TAACAGGAGGGAGTGAAGAG+GGG | + | chr3.3:4205656-4205675 | MS.gene56227:CDS | 50.0% | |
| TCAACCACCGTTTGGAAACG+AGG | - | chr3.3:4205333-4205352 | None:intergenic | 50.0% | |
| TGCTCGTTGCTTACAACCGA+AGG | + | chr3.3:4207480-4207499 | MS.gene56227:CDS | 50.0% | |
| !! | CAATGCGGGTTGATACAGAG+TGG | + | chr3.3:4205521-4205540 | MS.gene56227:CDS | 50.0% |
| !! | GGATGATGGCGTTTTCGGTT+TGG | + | chr3.3:4206212-4206231 | MS.gene56227:CDS | 50.0% |
| !! | GTGGTGTTTCGGTTTTTCGG+AGG | + | chr3.3:4205540-4205559 | MS.gene56227:CDS | 50.0% |
| !! | TCGGTTTGGCTGTTGTTTGC+AGG | + | chr3.3:4206226-4206245 | MS.gene56227:CDS | 50.0% |
| !! | TGGGGCGTGTTGTTTGATGT+TGG | + | chr3.3:4205927-4205946 | MS.gene56227:CDS | 50.0% |
| GAGAGTGAAGTTGCATGGCG+AGG | - | chr3.3:4205192-4205211 | None:intergenic | 55.0% | |
| GGCGAGGACCATATGGTTGA+AGG | - | chr3.3:4205176-4205195 | None:intergenic | 55.0% | |
| GGTAACAGGAGGGAGTGAAG+AGG | + | chr3.3:4205654-4205673 | MS.gene56227:CDS | 55.0% | |
| GTTGCATGGCGAGGACCATA+TGG | - | chr3.3:4205183-4205202 | None:intergenic | 55.0% | |
| AGGAGGGAGTGAAGAGGGGT+TGG | + | chr3.3:4205660-4205679 | MS.gene56227:CDS | 60.0% | |
| TTGGGCCGGACTCTCCTCAT+AGG | - | chr3.3:4206474-4206493 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 4205076 | 4207725 | 4205076 | ID=MS.gene56227 |
| chr3.3 | mRNA | 4205076 | 4207725 | 4205076 | ID=MS.gene56227.t1;Parent=MS.gene56227 |
| chr3.3 | exon | 4205076 | 4206247 | 4205076 | ID=MS.gene56227.t1.exon1;Parent=MS.gene56227.t1 |
| chr3.3 | CDS | 4205076 | 4206247 | 4205076 | ID=cds.MS.gene56227.t1;Parent=MS.gene56227.t1 |
| chr3.3 | exon | 4207452 | 4207725 | 4207452 | ID=MS.gene56227.t1.exon2;Parent=MS.gene56227.t1 |
| chr3.3 | CDS | 4207452 | 4207725 | 4207452 | ID=cds.MS.gene56227.t1;Parent=MS.gene56227.t1 |
| Gene Sequence |
| Protein sequence |
