Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56562.t1 | XP_024630954.1 | 96.7 | 369 | 12 | 0 | 1 | 369 | 125 | 493 | 4.10E-205 | 723.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56562.t1 | Q8N9H8 | 22.2 | 306 | 146 | 8 | 24 | 323 | 512 | 731 | 6.8e-07 | 56.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56562.t1 | A0A396JEN7 | 96.7 | 369 | 12 | 0 | 1 | 369 | 125 | 493 | 2.9e-205 | 723.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene56562 | 0.837902 | 3.95E-57 | -1.69E-46 |
| MS.gene049159 | MS.gene56562 | 0.835931 | 1.26E-56 | -1.69E-46 |
| MS.gene049404 | MS.gene56562 | 0.839039 | 2.01E-57 | -1.69E-46 |
| MS.gene049435 | MS.gene56562 | 0.83192 | 1.27E-55 | -1.69E-46 |
| MS.gene049501 | MS.gene56562 | 0.838814 | 2.30E-57 | -1.69E-46 |
| MS.gene049647 | MS.gene56562 | 0.812715 | 3.69E-51 | -1.69E-46 |
| MS.gene049850 | MS.gene56562 | 0.827742 | 1.32E-54 | -1.69E-46 |
| MS.gene050442 | MS.gene56562 | 0.827199 | 1.79E-54 | -1.69E-46 |
| MS.gene050719 | MS.gene56562 | 0.83543 | 1.69E-56 | -1.69E-46 |
| MS.gene050721 | MS.gene56562 | 0.83239 | 9.71E-56 | -1.69E-46 |
| MS.gene050724 | MS.gene56562 | 0.825015 | 5.90E-54 | -1.69E-46 |
| MS.gene050780 | MS.gene56562 | 0.814948 | 1.19E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene56562 | 0.814349 | 1.61E-51 | -1.69E-46 |
| MS.gene050844 | MS.gene56562 | 0.812774 | 3.58E-51 | -1.69E-46 |
| MS.gene051180 | MS.gene56562 | 0.815033 | 1.14E-51 | -1.69E-46 |
| MS.gene051198 | MS.gene56562 | 0.81607 | 6.68E-52 | -1.69E-46 |
| MS.gene051247 | MS.gene56562 | 0.829076 | 6.30E-55 | -1.69E-46 |
| MS.gene051279 | MS.gene56562 | 0.808158 | 3.55E-50 | -1.69E-46 |
| MS.gene051388 | MS.gene56562 | 0.80495 | 1.69E-49 | -1.69E-46 |
| MS.gene05157 | MS.gene56562 | 0.829764 | 4.29E-55 | -1.69E-46 |
| MS.gene051719 | MS.gene56562 | 0.834335 | 3.18E-56 | -1.69E-46 |
| MS.gene051720 | MS.gene56562 | 0.816766 | 4.67E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene56562 | 0.846513 | 2.07E-59 | -1.69E-46 |
| MS.gene051800 | MS.gene56562 | 0.801018 | 1.10E-48 | -1.69E-46 |
| MS.gene052012 | MS.gene56562 | 0.823331 | 1.47E-53 | -1.69E-46 |
| MS.gene052020 | MS.gene56562 | 0.874251 | 7.81E-68 | -1.69E-46 |
| MS.gene05215 | MS.gene56562 | 0.802075 | 6.66E-49 | -1.69E-46 |
| MS.gene052190 | MS.gene56562 | 0.800609 | 1.33E-48 | -1.69E-46 |
| MS.gene052323 | MS.gene56562 | 0.862094 | 6.46E-64 | -1.69E-46 |
| MS.gene052516 | MS.gene56562 | 0.823854 | 1.11E-53 | -1.69E-46 |
| MS.gene052519 | MS.gene56562 | 0.811086 | 8.35E-51 | -1.69E-46 |
| MS.gene052561 | MS.gene56562 | 0.802222 | 6.22E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene56562 | 0.805833 | 1.10E-49 | -1.69E-46 |
| MS.gene052584 | MS.gene56562 | 0.803015 | 4.26E-49 | -1.69E-46 |
| MS.gene052611 | MS.gene56562 | 0.834469 | 2.94E-56 | -1.69E-46 |
| MS.gene052612 | MS.gene56562 | 0.819863 | 9.29E-53 | -1.69E-46 |
| MS.gene052665 | MS.gene56562 | 0.831131 | 1.99E-55 | -1.69E-46 |
| MS.gene052773 | MS.gene56562 | 0.839244 | 1.78E-57 | -1.69E-46 |
| MS.gene052863 | MS.gene56562 | 0.837287 | 5.68E-57 | -1.69E-46 |
| MS.gene052896 | MS.gene56562 | 0.842908 | 1.94E-58 | -1.69E-46 |
| MS.gene053079 | MS.gene56562 | 0.821104 | 4.82E-53 | -1.69E-46 |
| MS.gene053166 | MS.gene56562 | 0.812819 | 3.50E-51 | -1.69E-46 |
| MS.gene053221 | MS.gene56562 | 0.842428 | 2.60E-58 | -1.69E-46 |
| MS.gene053226 | MS.gene56562 | 0.849928 | 2.36E-60 | -1.69E-46 |
| MS.gene053599 | MS.gene56562 | 0.802511 | 5.42E-49 | -1.69E-46 |
| MS.gene053883 | MS.gene56562 | 0.816666 | 4.92E-52 | -1.69E-46 |
| MS.gene053966 | MS.gene56562 | 0.820078 | 8.29E-53 | -1.69E-46 |
| MS.gene05414 | MS.gene56562 | 0.802619 | 5.15E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene56562 | 0.823561 | 1.30E-53 | -1.69E-46 |
| MS.gene054236 | MS.gene56562 | 0.822545 | 2.24E-53 | -1.69E-46 |
| MS.gene054467 | MS.gene56562 | 0.836786 | 7.63E-57 | -1.69E-46 |
| MS.gene054468 | MS.gene56562 | 0.807691 | 4.47E-50 | -1.69E-46 |
| MS.gene054472 | MS.gene56562 | 0.810663 | 1.03E-50 | -1.69E-46 |
| MS.gene05447 | MS.gene56562 | 0.812778 | 3.57E-51 | -1.69E-46 |
| MS.gene054559 | MS.gene56562 | 0.809912 | 1.50E-50 | -1.69E-46 |
| MS.gene054576 | MS.gene56562 | 0.803597 | 3.23E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene56562 | 0.830558 | 2.74E-55 | -1.69E-46 |
| MS.gene054775 | MS.gene56562 | 0.829882 | 4.01E-55 | -1.69E-46 |
| MS.gene055227 | MS.gene56562 | 0.827464 | 1.54E-54 | -1.69E-46 |
| MS.gene055357 | MS.gene56562 | 0.813846 | 2.08E-51 | -1.69E-46 |
| MS.gene055465 | MS.gene56562 | 0.820774 | 5.74E-53 | -1.69E-46 |
| MS.gene055466 | MS.gene56562 | 0.83275 | 7.91E-56 | -1.69E-46 |
| MS.gene055469 | MS.gene56562 | 0.804548 | 2.05E-49 | -1.69E-46 |
| MS.gene055512 | MS.gene56562 | 0.83001 | 3.74E-55 | -1.69E-46 |
| MS.gene055778 | MS.gene56562 | 0.833999 | 3.86E-56 | -1.69E-46 |
| MS.gene055818 | MS.gene56562 | 0.823215 | 1.56E-53 | -1.69E-46 |
| MS.gene055891 | MS.gene56562 | 0.804065 | 2.58E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene56562 | 0.810782 | 9.71E-51 | -1.69E-46 |
| MS.gene05604 | MS.gene56562 | 0.818873 | 1.56E-52 | -1.69E-46 |
| MS.gene056050 | MS.gene56562 | 0.839751 | 1.31E-57 | -1.69E-46 |
| MS.gene056173 | MS.gene56562 | 0.88254 | 9.56E-71 | -1.69E-46 |
| MS.gene056174 | MS.gene56562 | 0.80517 | 1.52E-49 | -1.69E-46 |
| MS.gene056366 | MS.gene56562 | 0.822238 | 2.64E-53 | -1.69E-46 |
| MS.gene056506 | MS.gene56562 | 0.800731 | 1.26E-48 | -1.69E-46 |
| MS.gene056553 | MS.gene56562 | 0.819247 | 1.28E-52 | -1.69E-46 |
| MS.gene057414 | MS.gene56562 | 0.80057 | 1.35E-48 | -1.69E-46 |
| MS.gene057444 | MS.gene56562 | 0.819558 | 1.09E-52 | -1.69E-46 |
| MS.gene057693 | MS.gene56562 | 0.802475 | 5.51E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene56562 | 0.848144 | 7.39E-60 | -1.69E-46 |
| MS.gene057915 | MS.gene56562 | 0.855616 | 5.60E-62 | -1.69E-46 |
| MS.gene058010 | MS.gene56562 | 0.810053 | 1.40E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene56562 | 0.833595 | 4.87E-56 | -1.69E-46 |
| MS.gene058636 | MS.gene56562 | 0.862103 | 6.42E-64 | -1.69E-46 |
| MS.gene058829 | MS.gene56562 | 0.832414 | 9.58E-56 | -1.69E-46 |
| MS.gene058919 | MS.gene56562 | 0.802448 | 5.58E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene56562 | 0.855903 | 4.61E-62 | -1.69E-46 |
| MS.gene059220 | MS.gene56562 | 0.80702 | 6.20E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene56562 | 0.807092 | 5.99E-50 | -1.69E-46 |
| MS.gene059570 | MS.gene56562 | 0.819665 | 1.03E-52 | -1.69E-46 |
| MS.gene059625 | MS.gene56562 | 0.836178 | 1.09E-56 | -1.69E-46 |
| MS.gene059725 | MS.gene56562 | 0.818325 | 2.08E-52 | -1.69E-46 |
| MS.gene059842 | MS.gene56562 | 0.8255 | 4.53E-54 | -1.69E-46 |
| MS.gene059937 | MS.gene56562 | 0.837783 | 4.24E-57 | -1.69E-46 |
| MS.gene060137 | MS.gene56562 | -0.810317 | 1.22E-50 | -1.69E-46 |
| MS.gene060310 | MS.gene56562 | 0.836505 | 9.00E-57 | -1.69E-46 |
| MS.gene060312 | MS.gene56562 | 0.801423 | 9.07E-49 | -1.69E-46 |
| MS.gene060355 | MS.gene56562 | 0.81867 | 1.74E-52 | -1.69E-46 |
| MS.gene060572 | MS.gene56562 | 0.803212 | 3.88E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene56562 | 0.836571 | 8.65E-57 | -1.69E-46 |
| MS.gene060637 | MS.gene56562 | 0.823578 | 1.28E-53 | -1.69E-46 |
| MS.gene060803 | MS.gene56562 | 0.811051 | 8.49E-51 | -1.69E-46 |
| MS.gene060918 | MS.gene56562 | 0.800186 | 1.62E-48 | -1.69E-46 |
| MS.gene060998 | MS.gene56562 | 0.80307 | 4.15E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene56562.t1 | AT5G24340 | 62.198 | 373 | 127 | 4 | 1 | 369 | 124 | 486 | 1.31e-153 | 442 |
| MS.gene56562.t1 | AT5G24340 | 62.198 | 373 | 127 | 4 | 1 | 369 | 124 | 486 | 5.14e-153 | 441 |
Find 68 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTTGCTTGGAATATTTA+AGG | 0.149116 | 1.3:+11819696 | MS.gene56562:CDS |
| TGGACTGTCACCAACTTTAT+TGG | 0.183295 | 1.3:+11822235 | MS.gene56562:CDS |
| TGGAATATTTAAGGTCTTTC+AGG | 0.186668 | 1.3:+11819705 | MS.gene56562:CDS |
| TGGACAGGTTGAACCGTATT+TGG | 0.193079 | 1.3:+11817677 | None:intergenic |
| TTCTTGTTAAATAAGCAATT+TGG | 0.256042 | 1.3:-11822192 | None:intergenic |
| AAGAAGCAGTTGCCAATTAA+TGG | 0.266519 | 1.3:+11820874 | MS.gene56562:CDS |
| GTTGGGGATTTCACTATCTA+AGG | 0.266528 | 1.3:+11817794 | MS.gene56562:CDS |
| TCTCTGGGAAGCCCATTAAT+TGG | 0.275370 | 1.3:-11820886 | None:intergenic |
| TTGGGTTGAAAGAGCTATTC+AGG | 0.279184 | 1.3:+11820608 | MS.gene56562:CDS |
| TTAACAAGAATTTAGAGTTT+TGG | 0.282841 | 1.3:+11822205 | MS.gene56562:CDS |
| TTCTTGTTCTGATGTTGTTC+AGG | 0.290742 | 1.3:+11820699 | MS.gene56562:CDS |
| ACTTCGAATGGATAATCTAT+TGG | 0.346561 | 1.3:-11820578 | None:intergenic |
| GGACTGTCACCAACTTTATT+GGG | 0.348017 | 1.3:+11822236 | MS.gene56562:CDS |
| TCCATTCGAAGTGCAAATCT+TGG | 0.365006 | 1.3:+11820589 | MS.gene56562:CDS |
| GATCTTCGTTAATATTTAGT+TGG | 0.370178 | 1.3:-11822071 | None:intergenic |
| AGAAGCAGTTGCCAATTAAT+GGG | 0.394347 | 1.3:+11820875 | MS.gene56562:CDS |
| CAAAACATTTACGTTGTGTT+GGG | 0.402928 | 1.3:+11821339 | MS.gene56562:CDS |
| ACTATTTGTGGAGAATTGTT+GGG | 0.403644 | 1.3:+11817777 | MS.gene56562:CDS |
| AAGAGTTTGTCAACTATTTG+TGG | 0.413650 | 1.3:+11817765 | MS.gene56562:CDS |
| CACCTTGGGATCCAATAGTT+GGG | 0.419800 | 1.3:+11820947 | MS.gene56562:CDS |
| TTGTCAGAAAACATGGTGAT+AGG | 0.426512 | 1.3:+11820800 | MS.gene56562:CDS |
| ATGGATGCTCATTGCTTGCT+TGG | 0.427015 | 1.3:+11819685 | MS.gene56562:CDS |
| AACTATTTGTGGAGAATTGT+TGG | 0.431111 | 1.3:+11817776 | MS.gene56562:CDS |
| CAGGCAACGGTTGCCGAAGA+AGG | 0.435285 | 1.3:+11819724 | MS.gene56562:CDS |
| ATACTCTATTACCTTGGTTC+AGG | 0.437955 | 1.3:-11821392 | None:intergenic |
| CCATAGCTGCATATGTCATC+TGG | 0.441623 | 1.3:-11819666 | None:intergenic |
| GGTTCAGGCTTCTTTGAAGA+AGG | 0.443658 | 1.3:-11821377 | None:intergenic |
| AGGAGCTCCAATGTAGTGAT+TGG | 0.446279 | 1.3:+11819620 | MS.gene56562:intron |
| GTCATCTGGTCTTCTGTAAG+AGG | 0.455188 | 1.3:-11819652 | None:intergenic |
| CCATTCGAAGTGCAAATCTT+GGG | 0.457879 | 1.3:+11820590 | MS.gene56562:CDS |
| GCACCTTGGGATCCAATAGT+TGG | 0.460032 | 1.3:+11820946 | MS.gene56562:CDS |
| AAAGTTCCTCTGTGATGTTA+TGG | 0.461542 | 1.3:+11820984 | MS.gene56562:CDS |
| ATAACATCACAGAGGAACTT+TGG | 0.466771 | 1.3:-11820982 | None:intergenic |
| CCCAAGATTTGCACTTCGAA+TGG | 0.470113 | 1.3:-11820590 | None:intergenic |
| GCAAAACATTTACGTTGTGT+TGG | 0.472670 | 1.3:+11821338 | MS.gene56562:CDS |
| GTGGCAAGGTACCGCACCTT+GGG | 0.474336 | 1.3:+11820933 | MS.gene56562:CDS |
| ATATACTCAGGTTGAAGGCT+TGG | 0.480503 | 1.3:+11821316 | MS.gene56562:intron |
| GTTCAGGTGATACCTTCAGC+AGG | 0.480716 | 1.3:+11820715 | MS.gene56562:CDS |
| ATTCTACGCTGCAGGAGAGT+TGG | 0.488155 | 1.3:+11820546 | MS.gene56562:intron |
| AAGGAATATACTCAGGTTGA+AGG | 0.492962 | 1.3:+11821311 | MS.gene56562:intron |
| ACAATACCTCCCAATAAAGT+TGG | 0.500595 | 1.3:-11822245 | None:intergenic |
| CCAGATGACATATGCAGCTA+TGG | 0.508239 | 1.3:+11819666 | MS.gene56562:CDS |
| ATAGCCTCTTCAGTTGAAAG+TGG | 0.510202 | 1.3:-11822141 | None:intergenic |
| TGAATCACTGCCCCTGCTGA+AGG | 0.517305 | 1.3:-11820727 | None:intergenic |
| ATTTAAGGTCTTTCAGGCAA+CGG | 0.542045 | 1.3:+11819711 | MS.gene56562:CDS |
| GAGGCTATTGAAGCTGCAAA+GGG | 0.542175 | 1.3:+11822156 | MS.gene56562:CDS |
| CTATTTGTGGAGAATTGTTG+GGG | 0.548719 | 1.3:+11817778 | MS.gene56562:CDS |
| AGTGGCAAGGTACCGCACCT+TGG | 0.553048 | 1.3:+11820932 | MS.gene56562:CDS |
| AGAGGCTATTGAAGCTGCAA+AGG | 0.553698 | 1.3:+11822155 | MS.gene56562:CDS |
| GAAGCCACTTTCAACTGAAG+AGG | 0.554381 | 1.3:+11822137 | MS.gene56562:CDS |
| TGATTCAAAAGTCATCATGT+AGG | 0.563710 | 1.3:+11820743 | MS.gene56562:CDS |
| TTGAAAATTGTCAGAAAACA+TGG | 0.565414 | 1.3:+11820793 | MS.gene56562:CDS |
| GATTCAAAAGTCATCATGTA+GGG | 0.569974 | 1.3:+11820744 | MS.gene56562:CDS |
| TCAAGATGCACAAAATGCAA+TGG | 0.575984 | 1.3:+11822102 | MS.gene56562:CDS |
| ACACTCGTAATATCCAAATA+CGG | 0.580297 | 1.3:-11817690 | None:intergenic |
| ATTTAGAGAACTTTGATGAG+TGG | 0.582031 | 1.3:+11820914 | MS.gene56562:CDS |
| ACCTTGGGATCCAATAGTTG+GGG | 0.583139 | 1.3:+11820948 | MS.gene56562:CDS |
| ATGTAGGGATACTAAGCCAA+TGG | 0.584459 | 1.3:+11820759 | MS.gene56562:CDS |
| GAGAACTTTGATGAGTGGCA+AGG | 0.591373 | 1.3:+11820919 | MS.gene56562:CDS |
| TTCAGGTGATACCTTCAGCA+GGG | 0.596087 | 1.3:+11820716 | MS.gene56562:CDS |
| CTGTCACCAACTTTATTGGG+AGG | 0.600563 | 1.3:+11822239 | MS.gene56562:CDS |
| GTTGTGACCAATCACTACAT+TGG | 0.602180 | 1.3:-11819627 | None:intergenic |
| GATGCACAAAATGCAATGGA+AGG | 0.607518 | 1.3:+11822106 | MS.gene56562:CDS |
| TCAGGTGATACCTTCAGCAG+GGG | 0.648948 | 1.3:+11820717 | MS.gene56562:CDS |
| AACTATTGGATCCCAAGGTG+CGG | 0.659265 | 1.3:-11820944 | None:intergenic |
| CTTCAAAGAAGCCTGAACCA+AGG | 0.685428 | 1.3:+11821381 | MS.gene56562:CDS |
| CCTTGGGATCCAATAGTTGG+GGG | 0.730135 | 1.3:+11820949 | MS.gene56562:CDS |
| TGCTTACCATAACATCACAG+AGG | 0.777770 | 1.3:-11820990 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAAAAAACTAGTTT+TGG | + | chr1.3:11818200-11818219 | MS.gene56562:intron | 10.0% |
| !! | AAAAAAACATAAATGTTCTT+TGG | - | chr1.3:11819100-11819119 | None:intergenic | 15.0% |
| !! | ACATGAATAAAATAATTGTA+AGG | - | chr1.3:11818856-11818875 | None:intergenic | 15.0% |
| !! | ATTCTGTAACTAATAATATT+TGG | - | chr1.3:11819366-11819385 | None:intergenic | 15.0% |
| !! | TATGTTTATTGAGTTTAAAA+AGG | + | chr1.3:11819388-11819407 | MS.gene56562:intron | 15.0% |
| !!! | ATAATACTTTTCTAAATCAA+AGG | - | chr1.3:11818237-11818256 | None:intergenic | 15.0% |
| !! | AACTGAATTATATTTGCTTT+AGG | + | chr1.3:11819600-11819619 | MS.gene56562:intron | 20.0% |
| !! | AAGAATATTAAAGCTTTACA+TGG | - | chr1.3:11818792-11818811 | None:intergenic | 20.0% |
| !! | AGTCAAATTAATATTTAACC+TGG | + | chr1.3:11821867-11821886 | MS.gene56562:intron | 20.0% |
| !! | ATATTTATTGAAATGCGTTA+TGG | + | chr1.3:11821210-11821229 | MS.gene56562:intron | 20.0% |
| !! | ATGTATATAATAGGACATAA+GGG | + | chr1.3:11819483-11819502 | MS.gene56562:intron | 20.0% |
| !! | CTAGTTTCTATCTTAAAAAA+AGG | - | chr1.3:11818276-11818295 | None:intergenic | 20.0% |
| !! | TAAGTTCATTATTATTTGTG+TGG | + | chr1.3:11821454-11821473 | MS.gene56562:intron | 20.0% |
| !! | TAGTATAACATTATCTTTCA+AGG | + | chr1.3:11821745-11821764 | MS.gene56562:intron | 20.0% |
| !! | TGAGTTTAAAAAGGAATAAT+AGG | + | chr1.3:11819397-11819416 | MS.gene56562:intron | 20.0% |
| !! | TTCTTGTTAAATAAGCAATT+TGG | - | chr1.3:11822195-11822214 | None:intergenic | 20.0% |
| !! | TTTAAAAAATGCAAACTGAA+AGG | - | chr1.3:11820208-11820227 | None:intergenic | 20.0% |
| !!! | AATTTGACTTAAAAAATCCA+TGG | - | chr1.3:11821856-11821875 | None:intergenic | 20.0% |
| !!! | ATAAGCAATTTGGTATTTTT+TGG | - | chr1.3:11822185-11822204 | None:intergenic | 20.0% |
| !!! | ATTTGACTTAAAAAATCCAT+GGG | - | chr1.3:11821855-11821874 | None:intergenic | 20.0% |
| !!! | GTATAGAATGTTAATTTTCA+TGG | + | chr1.3:11821784-11821803 | MS.gene56562:intron | 20.0% |
| !!! | TACTTAGATTTCAAGTATAA+AGG | + | chr1.3:11821924-11821943 | MS.gene56562:intron | 20.0% |
| !!! | TATATGGCTTATTTTATAAC+TGG | + | chr1.3:11820005-11820024 | MS.gene56562:intron | 20.0% |
| !!! | TCGTTTGTTAAAATAAATAG+TGG | + | chr1.3:11820231-11820250 | MS.gene56562:intron | 20.0% |
| !!! | TTAACAAGAATTTAGAGTTT+TGG | + | chr1.3:11822205-11822224 | MS.gene56562:CDS | 20.0% |
| !!! | TTTTTTGTCTTTTCTTGATA+TGG | - | chr1.3:11820069-11820088 | None:intergenic | 20.0% |
| ! | AAATTTCATTCCTAAGTAGA+TGG | + | chr1.3:11819024-11819043 | MS.gene56562:intron | 25.0% |
| ! | AAGACAACTTACAAAAGATT+AGG | - | chr1.3:11819186-11819205 | None:intergenic | 25.0% |
| ! | AATAATACTGTAGGATACAA+AGG | - | chr1.3:11818170-11818189 | None:intergenic | 25.0% |
| ! | AGAAACAGGATGTATATAAT+AGG | + | chr1.3:11819474-11819493 | MS.gene56562:intron | 25.0% |
| ! | AGGAACACTAGAAAATATAT+CGG | - | chr1.3:11818150-11818169 | None:intergenic | 25.0% |
| ! | ATAAAATGTGAGTATGAATC+TGG | + | chr1.3:11821287-11821306 | MS.gene56562:intron | 25.0% |
| ! | ATATTCTATATCCATTCACT+AGG | + | chr1.3:11820484-11820503 | MS.gene56562:intron | 25.0% |
| ! | CAGTTTATGTTAATAGAAAC+AGG | + | chr1.3:11819460-11819479 | MS.gene56562:intron | 25.0% |
| ! | CATCTTCAGTTTAAGAAAAA+TGG | + | chr1.3:11817720-11817739 | MS.gene56562:CDS | 25.0% |
| ! | CTATCTTAAAAAAAGGAGTT+CGG | - | chr1.3:11818269-11818288 | None:intergenic | 25.0% |
| ! | GATCTTCGTTAATATTTAGT+TGG | - | chr1.3:11822074-11822093 | None:intergenic | 25.0% |
| ! | GATGTATATAATAGGACATA+AGG | + | chr1.3:11819482-11819501 | MS.gene56562:intron | 25.0% |
| ! | GCGAATTAATTTAAACTAGA+GGG | - | chr1.3:11819865-11819884 | None:intergenic | 25.0% |
| ! | GTTCATAAAAATTGAAGAGA+GGG | - | chr1.3:11821043-11821062 | None:intergenic | 25.0% |
| ! | TACACAGAATTTCTTGTAAT+TGG | + | chr1.3:11820513-11820532 | MS.gene56562:intron | 25.0% |
| ! | TATTCTATATCCATTCACTA+GGG | + | chr1.3:11820485-11820504 | MS.gene56562:intron | 25.0% |
| ! | TCAATTTCTCAAGCAATATA+TGG | - | chr1.3:11822001-11822020 | None:intergenic | 25.0% |
| ! | TGGAGCATATAATATATGAT+CGG | + | chr1.3:11821140-11821159 | MS.gene56562:intron | 25.0% |
| ! | TGTATATAATAGGACATAAG+GGG | + | chr1.3:11819484-11819503 | MS.gene56562:intron | 25.0% |
| ! | TTAGGAATGAAATTTGCATA+AGG | - | chr1.3:11819019-11819038 | None:intergenic | 25.0% |
| ! | TTCAACAAAAATTCATCCAT+TGG | - | chr1.3:11820778-11820797 | None:intergenic | 25.0% |
| ! | TTCAGTTTAAGAAAAATGGA+AGG | + | chr1.3:11817724-11817743 | MS.gene56562:CDS | 25.0% |
| ! | TTGAAAATTGTCAGAAAACA+TGG | + | chr1.3:11820793-11820812 | MS.gene56562:CDS | 25.0% |
| ! | TTTGTCGAAAATAATACTGT+AGG | - | chr1.3:11818179-11818198 | None:intergenic | 25.0% |
| !! | AATTTCTTCTGAAGAGTTTA+TGG | - | chr1.3:11819967-11819986 | None:intergenic | 25.0% |
| !! | TAGCATTTTCAGTTACTATA+AGG | + | chr1.3:11819573-11819592 | MS.gene56562:intron | 25.0% |
| !! | TTCTCTAAATGTTTTTCTCT+GGG | - | chr1.3:11820904-11820923 | None:intergenic | 25.0% |
| !!! | AAAACAAGATGTTAGCTTTT+TGG | - | chr1.3:11818356-11818375 | None:intergenic | 25.0% |
| !!! | CACAATTAGAAGTTAGTTTT+CGG | + | chr1.3:11817979-11817998 | MS.gene56562:intron | 25.0% |
| !!! | CAGCATTCTATTTTTCAAAT+TGG | + | chr1.3:11819915-11819934 | MS.gene56562:intron | 25.0% |
| AAAAAATGAACAGCTACTTG+AGG | + | chr1.3:11821632-11821651 | MS.gene56562:CDS | 30.0% | |
| AAAATTATTTGTGCCATCCT+TGG | + | chr1.3:11820087-11820106 | MS.gene56562:intron | 30.0% | |
| AACTATTTGTGGAGAATTGT+TGG | + | chr1.3:11817776-11817795 | MS.gene56562:CDS | 30.0% | |
| AAGAGTTTGTCAACTATTTG+TGG | + | chr1.3:11817765-11817784 | MS.gene56562:CDS | 30.0% | |
| ACACTCGTAATATCCAAATA+CGG | - | chr1.3:11817693-11817712 | None:intergenic | 30.0% | |
| ACATGCTTTCTCAAATTTGT+TGG | + | chr1.3:11819278-11819297 | MS.gene56562:intron | 30.0% | |
| ACCCAAAAAGTTGAATTGAA+TGG | - | chr1.3:11817841-11817860 | None:intergenic | 30.0% | |
| ACTATTTGTGGAGAATTGTT+GGG | + | chr1.3:11817777-11817796 | MS.gene56562:CDS | 30.0% | |
| ACTTCGAATGGATAATCTAT+TGG | - | chr1.3:11820581-11820600 | None:intergenic | 30.0% | |
| ATGTCAGACATCAATATACA+CGG | + | chr1.3:11818872-11818891 | MS.gene56562:intron | 30.0% | |
| ATTGAAATGCGTTATGGAAA+AGG | + | chr1.3:11821216-11821235 | MS.gene56562:intron | 30.0% | |
| ATTTAGAGAACTTTGATGAG+TGG | + | chr1.3:11820914-11820933 | MS.gene56562:CDS | 30.0% | |
| CAAAACATTTACGTTGTGTT+GGG | + | chr1.3:11821339-11821358 | MS.gene56562:CDS | 30.0% | |
| CAAAATACATAAATATCGCC+AGG | + | chr1.3:11818724-11818743 | MS.gene56562:intron | 30.0% | |
| CCACATAGACTCTATTATAT+AGG | + | chr1.3:11818638-11818657 | MS.gene56562:intron | 30.0% | |
| CCTATATAATAGAGTCTATG+TGG | - | chr1.3:11818641-11818660 | None:intergenic | 30.0% | |
| CGCGAATTAATTTAAACTAG+AGG | - | chr1.3:11819866-11819885 | None:intergenic | 30.0% | |
| CGTTCATAAAAATTGAAGAG+AGG | - | chr1.3:11821044-11821063 | None:intergenic | 30.0% | |
| CTTTCAGTAAAAACCTTCTT+CGG | - | chr1.3:11819740-11819759 | None:intergenic | 30.0% | |
| GATGTGAAAGTAAGATCATA+TGG | - | chr1.3:11820454-11820473 | None:intergenic | 30.0% | |
| GATTCAAAAGTCATCATGTA+GGG | + | chr1.3:11820744-11820763 | MS.gene56562:CDS | 30.0% | |
| GCAAAGTGAAACTATTAATC+AGG | - | chr1.3:11820133-11820152 | None:intergenic | 30.0% | |
| GTCATAAACGTAGATATGTT+TGG | + | chr1.3:11818297-11818316 | MS.gene56562:intron | 30.0% | |
| GTTGGAAAGTTTCAATAATC+TGG | - | chr1.3:11822056-11822075 | None:intergenic | 30.0% | |
| TAGTAACTGAAAATGCTAGT+TGG | - | chr1.3:11819571-11819590 | None:intergenic | 30.0% | |
| TAGTTAAATTCCAATCACTC+TGG | + | chr1.3:11821120-11821139 | MS.gene56562:intron | 30.0% | |
| TATACCCTTTCGTTAATCTT+TGG | + | chr1.3:11821069-11821088 | MS.gene56562:intron | 30.0% | |
| TATCTTTCAAGGAACTCTTA+TGG | + | chr1.3:11821756-11821775 | MS.gene56562:intron | 30.0% | |
| TCTTCAGTTAGAACTTAGAA+GGG | + | chr1.3:11819202-11819221 | MS.gene56562:intron | 30.0% | |
| TGATTCAAAAGTCATCATGT+AGG | + | chr1.3:11820743-11820762 | MS.gene56562:CDS | 30.0% | |
| TGCATCACTTATAAAGACAA+TGG | + | chr1.3:11820325-11820344 | MS.gene56562:intron | 30.0% | |
| TTGCTGTATTAAATGTAGTC+AGG | + | chr1.3:11818107-11818126 | MS.gene56562:intron | 30.0% | |
| TTGCTTGCTTGGAATATTTA+AGG | + | chr1.3:11819696-11819715 | MS.gene56562:CDS | 30.0% | |
| TTTATTAAATTCTACGCTGC+AGG | + | chr1.3:11820538-11820557 | MS.gene56562:intron | 30.0% | |
| TTTGTTGAATCCATCTACTT+AGG | - | chr1.3:11819037-11819056 | None:intergenic | 30.0% | |
| ! | AGCCATTCAATTCAACTTTT+TGG | + | chr1.3:11817836-11817855 | MS.gene56562:intron | 30.0% |
| ! | ATATACACGGTGTCAAAATT+AGG | + | chr1.3:11818885-11818904 | MS.gene56562:intron | 30.0% |
| ! | ATTTGTTAGCTTAAACTTCC+AGG | - | chr1.3:11818460-11818479 | None:intergenic | 30.0% |
| ! | CAGAAGAAATTATGATGATG+CGG | + | chr1.3:11819976-11819995 | MS.gene56562:intron | 30.0% |
| ! | CTGGCGATATTTATGTATTT+TGG | - | chr1.3:11818726-11818745 | None:intergenic | 30.0% |
| ! | GCCATTCAATTCAACTTTTT+GGG | + | chr1.3:11817837-11817856 | MS.gene56562:intron | 30.0% |
| ! | GTTCTCTAAATGTTTTTCTC+TGG | - | chr1.3:11820905-11820924 | None:intergenic | 30.0% |
| ! | TGGAATATTTAAGGTCTTTC+AGG | + | chr1.3:11819705-11819724 | MS.gene56562:CDS | 30.0% |
| !! | ATTAGGTGCTTTATTTCTGT+AGG | + | chr1.3:11818902-11818921 | MS.gene56562:intron | 30.0% |
| !! | TTTAGAGTTTTGGCAATGTA+TGG | + | chr1.3:11822215-11822234 | MS.gene56562:CDS | 30.0% |
| !!! | AAAACTAGTTTTGGAAGCTA+AGG | + | chr1.3:11818209-11818228 | MS.gene56562:intron | 30.0% |
| !!! | AAACTAGTTTTGGAAGCTAA+GGG | + | chr1.3:11818210-11818229 | MS.gene56562:intron | 30.0% |
| !!! | CAATTTTAGCTGTGTCATTA+TGG | - | chr1.3:11822026-11822045 | None:intergenic | 30.0% |
| AAAGTTCCTCTGTGATGTTA+TGG | + | chr1.3:11820984-11821003 | MS.gene56562:CDS | 35.0% | |
| AACCTCCAAAGATTAACGAA+AGG | - | chr1.3:11821077-11821096 | None:intergenic | 35.0% | |
| AAGAAGCAGTTGCCAATTAA+TGG | + | chr1.3:11820874-11820893 | MS.gene56562:CDS | 35.0% | |
| AATGCGTTATGGAAAAGGAA+AGG | + | chr1.3:11821221-11821240 | MS.gene56562:intron | 35.0% | |
| ACAATGATAATTCATCCGAC+AGG | - | chr1.3:11821507-11821526 | None:intergenic | 35.0% | |
| ACATTAATGCTGCCAACATA+AGG | + | chr1.3:11819138-11819157 | MS.gene56562:intron | 35.0% | |
| ACCATGCAAAAAATGAGCTA+GGG | - | chr1.3:11821960-11821979 | None:intergenic | 35.0% | |
| ACCTCCAAAGATTAACGAAA+GGG | - | chr1.3:11821076-11821095 | None:intergenic | 35.0% | |
| AGAAGCAGTTGCCAATTAAT+GGG | + | chr1.3:11820875-11820894 | MS.gene56562:CDS | 35.0% | |
| AGATAACTAGAGACATGTGA+TGG | + | chr1.3:11818585-11818604 | MS.gene56562:intron | 35.0% | |
| ATAACATCACAGAGGAACTT+TGG | - | chr1.3:11820985-11821004 | None:intergenic | 35.0% | |
| ATACTCTATTACCTTGGTTC+AGG | - | chr1.3:11821395-11821414 | None:intergenic | 35.0% | |
| ATCTGGTAAGGAATATACTC+AGG | + | chr1.3:11821304-11821323 | MS.gene56562:intron | 35.0% | |
| ATGTGAGTATGAATCTGGTA+AGG | + | chr1.3:11821292-11821311 | MS.gene56562:intron | 35.0% | |
| ATTATATGCTCCAGAGTGAT+TGG | - | chr1.3:11821133-11821152 | None:intergenic | 35.0% | |
| CAAATGGAAAATTCCAAGGA+TGG | - | chr1.3:11820103-11820122 | None:intergenic | 35.0% | |
| CCAAGACCTCAAAAAAGAAA+CGG | + | chr1.3:11820851-11820870 | MS.gene56562:CDS | 35.0% | |
| CTATTTGTGGAGAATTGTTG+GGG | + | chr1.3:11817778-11817797 | MS.gene56562:CDS | 35.0% | |
| CTTAATACATGAACAGTGAG+CGG | + | chr1.3:11818546-11818565 | MS.gene56562:intron | 35.0% | |
| GAAAGTTTCATACCAATCTC+TGG | + | chr1.3:11819755-11819774 | MS.gene56562:intron | 35.0% | |
| GAAGCCATGATACAAGTTTA+AGG | - | chr1.3:11818506-11818525 | None:intergenic | 35.0% | |
| GACACAAATGGAAAATTCCA+AGG | - | chr1.3:11820107-11820126 | None:intergenic | 35.0% | |
| GATGATGCGGAAAAGATATA+TGG | + | chr1.3:11819989-11820008 | MS.gene56562:intron | 35.0% | |
| GCAAAACATTTACGTTGTGT+TGG | + | chr1.3:11821338-11821357 | MS.gene56562:CDS | 35.0% | |
| GTCTTCAGTTAGAACTTAGA+AGG | + | chr1.3:11819201-11819220 | MS.gene56562:intron | 35.0% | |
| GTGTAGTTCAAAGTTCAAAC+CGG | - | chr1.3:11818619-11818638 | None:intergenic | 35.0% | |
| GTTTAAACCAGTCCTTATGT+TGG | - | chr1.3:11819153-11819172 | None:intergenic | 35.0% | |
| TCAAAGCATAAGTTGCAAGT+TGG | + | chr1.3:11818811-11818830 | MS.gene56562:intron | 35.0% | |
| TCAAGATGCACAAAATGCAA+TGG | + | chr1.3:11822102-11822121 | MS.gene56562:CDS | 35.0% | |
| TCTCTAGTTATCTCTCATTC+AGG | - | chr1.3:11818578-11818597 | None:intergenic | 35.0% | |
| TGACCAAGTAGCAGATTATT+GGG | + | chr1.3:11820162-11820181 | MS.gene56562:intron | 35.0% | |
| TGTGTACAGAAAACAAGTAG+TGG | + | chr1.3:11817870-11817889 | MS.gene56562:intron | 35.0% | |
| TTAATACATGAACAGTGAGC+GGG | + | chr1.3:11818547-11818566 | MS.gene56562:intron | 35.0% | |
| TTAATCAGGCAAGACACAAA+TGG | - | chr1.3:11820119-11820138 | None:intergenic | 35.0% | |
| TTCTTGATATGGAACTCAAG+TGG | - | chr1.3:11820058-11820077 | None:intergenic | 35.0% | |
| TTCTTGTTCTGATGTTGTTC+AGG | + | chr1.3:11820699-11820718 | MS.gene56562:CDS | 35.0% | |
| TTGACCAAGTAGCAGATTAT+TGG | + | chr1.3:11820161-11820180 | MS.gene56562:intron | 35.0% | |
| TTGGATCGATTAAGTTTGAC+TGG | + | chr1.3:11819934-11819953 | MS.gene56562:intron | 35.0% | |
| TTGGCAGCATTAATGTTCTT+TGG | - | chr1.3:11819134-11819153 | None:intergenic | 35.0% | |
| TTGTATAAAACACATCGTCC+TGG | + | chr1.3:11818439-11818458 | MS.gene56562:intron | 35.0% | |
| TTGTCAGAAAACATGGTGAT+AGG | + | chr1.3:11820800-11820819 | MS.gene56562:CDS | 35.0% | |
| ! | AGAAGCATACTCTATTACCT+TGG | - | chr1.3:11821401-11821420 | None:intergenic | 35.0% |
| ! | ATCTTTGGAGGTTAAGCAAT+AGG | + | chr1.3:11821084-11821103 | MS.gene56562:intron | 35.0% |
| ! | ATGGCCTTAAACTTGTATCA+TGG | + | chr1.3:11818499-11818518 | MS.gene56562:intron | 35.0% |
| ! | ATTTAAGGTCTTTCAGGCAA+CGG | + | chr1.3:11819711-11819730 | MS.gene56562:CDS | 35.0% |
| ! | CAAATATCACAGCATTGAGT+AGG | + | chr1.3:11817918-11817937 | MS.gene56562:intron | 35.0% |
| ! | CACACAATTTTGTGAAGCTT+TGG | + | chr1.3:11820660-11820679 | MS.gene56562:CDS | 35.0% |
| ! | GAGTTTTCACTTAGCATATG+AGG | + | chr1.3:11818059-11818078 | MS.gene56562:intron | 35.0% |
| ! | TCTATAGTTTGTCCAGAGAT+TGG | - | chr1.3:11819770-11819789 | None:intergenic | 35.0% |
| ! | TGGTGATAGGATTTTGCTAA+AGG | + | chr1.3:11820813-11820832 | MS.gene56562:CDS | 35.0% |
| ! | TTCTATTTTCCTCTTCCTGT+CGG | + | chr1.3:11821489-11821508 | MS.gene56562:intron | 35.0% |
| ! | TTTGGAACCTGAAATTCCAA+TGG | - | chr1.3:11819541-11819560 | None:intergenic | 35.0% |
| !! | AAGGAATATACTCAGGTTGA+AGG | + | chr1.3:11821311-11821330 | MS.gene56562:intron | 35.0% |
| !!! | AAGTTAGTTTTCGGTGTTTG+TGG | + | chr1.3:11817988-11818007 | MS.gene56562:intron | 35.0% |
| !!! | AGAAAAGAGTGCTTTTGACA+CGG | + | chr1.3:11821556-11821575 | MS.gene56562:CDS | 35.0% |
| !!! | CGTTTCTTTTTTGAGGTCTT+GGG | - | chr1.3:11820853-11820872 | None:intergenic | 35.0% |
| !!! | CTTCTTCCGTTTCTTTTTTG+AGG | - | chr1.3:11820860-11820879 | None:intergenic | 35.0% |
| ACAGCAAAGACAAACTTTCC+AGG | - | chr1.3:11821888-11821907 | None:intergenic | 40.0% | |
| ACCCTTTCGTTAATCTTTGG+AGG | + | chr1.3:11821072-11821091 | MS.gene56562:intron | 40.0% | |
| ACGAAATACAACACAACCAG+AGG | - | chr1.3:11819793-11819812 | None:intergenic | 40.0% | |
| AGAGAATGAGTGCACATGAA+TGG | + | chr1.3:11818480-11818499 | MS.gene56562:intron | 40.0% | |
| ATAATTCATCCGACAGGAAG+AGG | - | chr1.3:11821501-11821520 | None:intergenic | 40.0% | |
| ATAGCCTCTTCAGTTGAAAG+TGG | - | chr1.3:11822144-11822163 | None:intergenic | 40.0% | |
| ATGCAAAAAATGAGCTAGGG+AGG | - | chr1.3:11821957-11821976 | None:intergenic | 40.0% | |
| ATGCTAGTTGGCAAAGTCTT+TGG | - | chr1.3:11819559-11819578 | None:intergenic | 40.0% | |
| ATGTAGGGATACTAAGCCAA+TGG | + | chr1.3:11820759-11820778 | MS.gene56562:CDS | 40.0% | |
| CACCATGCAAAAAATGAGCT+AGG | - | chr1.3:11821961-11821980 | None:intergenic | 40.0% | |
| CCATTCGAAGTGCAAATCTT+GGG | + | chr1.3:11820590-11820609 | MS.gene56562:CDS | 40.0% | |
| CTTCCCAATAATCTGCTACT+TGG | - | chr1.3:11820168-11820187 | None:intergenic | 40.0% | |
| GAATGTGTTCTGCATCAAGA+AGG | + | chr1.3:11818943-11818962 | MS.gene56562:intron | 40.0% | |
| GATGCACAAAATGCAATGGA+AGG | + | chr1.3:11822106-11822125 | MS.gene56562:CDS | 40.0% | |
| GGACTGTCACCAACTTTATT+GGG | + | chr1.3:11822236-11822255 | MS.gene56562:CDS | 40.0% | |
| GGTGTTCATCATTATCAGTG+TGG | + | chr1.3:11821161-11821180 | MS.gene56562:intron | 40.0% | |
| GTGTATACATCCCTAGTGAA+TGG | - | chr1.3:11820498-11820517 | None:intergenic | 40.0% | |
| GTTGGGGATTTCACTATCTA+AGG | + | chr1.3:11817794-11817813 | MS.gene56562:CDS | 40.0% | |
| GTTGTGACCAATCACTACAT+TGG | - | chr1.3:11819630-11819649 | None:intergenic | 40.0% | |
| GTTTGCTCCATTGGAATTTC+AGG | + | chr1.3:11819531-11819550 | MS.gene56562:intron | 40.0% | |
| TCAAGGAACTCTTATGGAGT+AGG | + | chr1.3:11821762-11821781 | MS.gene56562:intron | 40.0% | |
| TCCATTCGAAGTGCAAATCT+TGG | + | chr1.3:11820589-11820608 | MS.gene56562:CDS | 40.0% | |
| TGCTTACCATAACATCACAG+AGG | - | chr1.3:11820993-11821012 | None:intergenic | 40.0% | |
| TGGACTGTCACCAACTTTAT+TGG | + | chr1.3:11822235-11822254 | MS.gene56562:CDS | 40.0% | |
| TTCTCTCACAAGAGTCAGTT+AGG | + | chr1.3:11818523-11818542 | MS.gene56562:intron | 40.0% | |
| ! | TGAGACTTTGCTGCATTGAT+TGG | + | chr1.3:11819826-11819845 | MS.gene56562:intron | 40.0% |
| !! | ATATACTCAGGTTGAAGGCT+TGG | + | chr1.3:11821316-11821335 | MS.gene56562:intron | 40.0% |
| !! | TTGGGTTGAAAGAGCTATTC+AGG | + | chr1.3:11820608-11820627 | MS.gene56562:CDS | 40.0% |
| !!! | CCGTTTCTTTTTTGAGGTCT+TGG | - | chr1.3:11820854-11820873 | None:intergenic | 40.0% |
| !!! | CTAGCTCATTTTTTGCATGG+TGG | + | chr1.3:11821959-11821978 | MS.gene56562:intron | 40.0% |
| !!! | GAAAAGAGTGCTTTTGACAC+GGG | + | chr1.3:11821557-11821576 | MS.gene56562:CDS | 40.0% |
| !!! | TCCCTAGCTCATTTTTTGCA+TGG | + | chr1.3:11821956-11821975 | MS.gene56562:intron | 40.0% |
| AACTATTGGATCCCAAGGTG+CGG | - | chr1.3:11820947-11820966 | None:intergenic | 45.0% | |
| AATGCTGCCAACATAAGGAC+TGG | + | chr1.3:11819143-11819162 | MS.gene56562:intron | 45.0% | |
| AATGTGCTCCCTGCTCATAA+CGG | + | chr1.3:11821816-11821835 | MS.gene56562:intron | 45.0% | |
| ACCTTGGGATCCAATAGTTG+GGG | + | chr1.3:11820948-11820967 | MS.gene56562:CDS | 45.0% | |
| AGAGGCTATTGAAGCTGCAA+AGG | + | chr1.3:11822155-11822174 | MS.gene56562:CDS | 45.0% | |
| AGGAGCTCCAATGTAGTGAT+TGG | + | chr1.3:11819620-11819639 | MS.gene56562:intron | 45.0% | |
| AGTCAGTCACTATTCAGACC+TGG | - | chr1.3:11818745-11818764 | None:intergenic | 45.0% | |
| ATGGATGCTCATTGCTTGCT+TGG | + | chr1.3:11819685-11819704 | MS.gene56562:CDS | 45.0% | |
| CAAGCATGTGTTTGCTCCAT+TGG | + | chr1.3:11819522-11819541 | MS.gene56562:intron | 45.0% | |
| CACCTTGGGATCCAATAGTT+GGG | + | chr1.3:11820947-11820966 | MS.gene56562:CDS | 45.0% | |
| CCAGATGACATATGCAGCTA+TGG | + | chr1.3:11819666-11819685 | MS.gene56562:CDS | 45.0% | |
| CCATAGCTGCATATGTCATC+TGG | - | chr1.3:11819669-11819688 | None:intergenic | 45.0% | |
| CCCAAGATTTGCACTTCGAA+TGG | - | chr1.3:11820593-11820612 | None:intergenic | 45.0% | |
| CTGAATAGTGACTGACTGCA+AGG | + | chr1.3:11818748-11818767 | MS.gene56562:intron | 45.0% | |
| CTGGACAAACTATAGACCTC+TGG | + | chr1.3:11819774-11819793 | MS.gene56562:intron | 45.0% | |
| CTGTCACCAACTTTATTGGG+AGG | + | chr1.3:11822239-11822258 | MS.gene56562:CDS | 45.0% | |
| CTTCAAAGAAGCCTGAACCA+AGG | + | chr1.3:11821381-11821400 | MS.gene56562:CDS | 45.0% | |
| GAGAACTTTGATGAGTGGCA+AGG | + | chr1.3:11820919-11820938 | MS.gene56562:CDS | 45.0% | |
| GAGGCTATTGAAGCTGCAAA+GGG | + | chr1.3:11822156-11822175 | MS.gene56562:CDS | 45.0% | |
| TATCCATCTCCCCCAACTAT+TGG | - | chr1.3:11820961-11820980 | None:intergenic | 45.0% | |
| TTCAGGTGATACCTTCAGCA+GGG | + | chr1.3:11820716-11820735 | MS.gene56562:CDS | 45.0% | |
| ! | ACATGTGATGGTGAAACTGC+CGG | + | chr1.3:11818597-11818616 | MS.gene56562:intron | 45.0% |
| ! | GAAGCCACTTTCAACTGAAG+AGG | + | chr1.3:11822137-11822156 | MS.gene56562:CDS | 45.0% |
| ! | GGTTCAGGCTTCTTTGAAGA+AGG | - | chr1.3:11821380-11821399 | None:intergenic | 45.0% |
| ! | GTCATCTGGTCTTCTGTAAG+AGG | - | chr1.3:11819655-11819674 | None:intergenic | 45.0% |
| ! | TCTCTGGGAAGCCCATTAAT+TGG | - | chr1.3:11820889-11820908 | None:intergenic | 45.0% |
| AACTCTAGCCCGTTATGAGC+AGG | - | chr1.3:11821828-11821847 | None:intergenic | 50.0% | |
| ACTCTAGCCCGTTATGAGCA+GGG | - | chr1.3:11821827-11821846 | None:intergenic | 50.0% | |
| ATGTGCTCCCTGCTCATAAC+GGG | + | chr1.3:11821817-11821836 | MS.gene56562:intron | 50.0% | |
| ATTCTACGCTGCAGGAGAGT+TGG | + | chr1.3:11820546-11820565 | MS.gene56562:intron | 50.0% | |
| CCTTGGGATCCAATAGTTGG+GGG | + | chr1.3:11820949-11820968 | MS.gene56562:CDS | 50.0% | |
| GATCCAATAGTTGGGGGAGA+TGG | + | chr1.3:11820955-11820974 | MS.gene56562:CDS | 50.0% | |
| GCACCTTGGGATCCAATAGT+TGG | + | chr1.3:11820946-11820965 | MS.gene56562:CDS | 50.0% | |
| GTTCAGGTGATACCTTCAGC+AGG | + | chr1.3:11820715-11820734 | MS.gene56562:CDS | 50.0% | |
| TCAGGTGATACCTTCAGCAG+GGG | + | chr1.3:11820717-11820736 | MS.gene56562:CDS | 50.0% | |
| CCCCCAACTATTGGATCCCA+AGG | - | chr1.3:11820952-11820971 | None:intergenic | 55.0% | |
| TGAATCACTGCCCCTGCTGA+AGG | - | chr1.3:11820730-11820749 | None:intergenic | 55.0% | |
| CAGGCAACGGTTGCCGAAGA+AGG | + | chr1.3:11819724-11819743 | MS.gene56562:CDS | 60.0% | |
| ! | CGGGCTAGAGTTTGAGCCCA+TGG | + | chr1.3:11821836-11821855 | MS.gene56562:intron | 60.0% |
| !! | AGTGGCAAGGTACCGCACCT+TGG | + | chr1.3:11820932-11820951 | MS.gene56562:CDS | 60.0% |
| !! | GTGGCAAGGTACCGCACCTT+GGG | + | chr1.3:11820933-11820952 | MS.gene56562:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 11817684 | 11822260 | 11817684 | ID=MS.gene56562 |
| chr1.3 | mRNA | 11817684 | 11822260 | 11817684 | ID=MS.gene56562.t1;Parent=MS.gene56562 |
| chr1.3 | exon | 11817684 | 11817815 | 11817684 | ID=MS.gene56562.t1.exon1;Parent=MS.gene56562.t1 |
| chr1.3 | CDS | 11817684 | 11817815 | 11817684 | ID=cds.MS.gene56562.t1;Parent=MS.gene56562.t1 |
| chr1.3 | exon | 11819622 | 11819745 | 11819622 | ID=MS.gene56562.t1.exon2;Parent=MS.gene56562.t1 |
| chr1.3 | CDS | 11819622 | 11819745 | 11819622 | ID=cds.MS.gene56562.t1;Parent=MS.gene56562.t1 |
| chr1.3 | exon | 11820560 | 11821005 | 11820560 | ID=MS.gene56562.t1.exon3;Parent=MS.gene56562.t1 |
| chr1.3 | CDS | 11820560 | 11821005 | 11820560 | ID=cds.MS.gene56562.t1;Parent=MS.gene56562.t1 |
| chr1.3 | exon | 11821326 | 11821402 | 11821326 | ID=MS.gene56562.t1.exon4;Parent=MS.gene56562.t1 |
| chr1.3 | CDS | 11821326 | 11821402 | 11821326 | ID=cds.MS.gene56562.t1;Parent=MS.gene56562.t1 |
| chr1.3 | exon | 11821530 | 11821653 | 11821530 | ID=MS.gene56562.t1.exon5;Parent=MS.gene56562.t1 |
| chr1.3 | CDS | 11821530 | 11821653 | 11821530 | ID=cds.MS.gene56562.t1;Parent=MS.gene56562.t1 |
| chr1.3 | exon | 11822057 | 11822260 | 11822057 | ID=MS.gene56562.t1.exon6;Parent=MS.gene56562.t1 |
| chr1.3 | CDS | 11822057 | 11822260 | 11822057 | ID=cds.MS.gene56562.t1;Parent=MS.gene56562.t1 |
| Gene Sequence |
| Protein sequence |
