Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60399.t1 | XP_003608626.1 | 84.7 | 569 | 19 | 1 | 1 | 501 | 169 | 737 | 1.10E-226 | 795.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60399.t1 | Q8RX22 | 48.5 | 573 | 206 | 10 | 5 | 501 | 152 | 711 | 6.2e-104 | 379.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60399.t1 | G7JGH0 | 84.7 | 569 | 19 | 1 | 1 | 501 | 169 | 737 | 8.3e-227 | 795.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene60399 | 0.815774 | 7.78E-52 | -1.69E-46 |
| MS.gene049283 | MS.gene60399 | 0.837441 | 5.19E-57 | -1.69E-46 |
| MS.gene049368 | MS.gene60399 | 0.803814 | 2.91E-49 | -1.69E-46 |
| MS.gene049499 | MS.gene60399 | 0.817125 | 3.88E-52 | -1.69E-46 |
| MS.gene049653 | MS.gene60399 | 0.811694 | 6.16E-51 | -1.69E-46 |
| MS.gene049983 | MS.gene60399 | 0.83969 | 1.36E-57 | -1.69E-46 |
| MS.gene050084 | MS.gene60399 | 0.814343 | 1.62E-51 | -1.69E-46 |
| MS.gene050085 | MS.gene60399 | 0.839237 | 1.79E-57 | -1.69E-46 |
| MS.gene050359 | MS.gene60399 | 0.850379 | 1.76E-60 | -1.69E-46 |
| MS.gene050361 | MS.gene60399 | 0.801083 | 1.06E-48 | -1.69E-46 |
| MS.gene050384 | MS.gene60399 | 0.841276 | 5.24E-58 | -1.69E-46 |
| MS.gene050386 | MS.gene60399 | 0.836569 | 8.67E-57 | -1.69E-46 |
| MS.gene050414 | MS.gene60399 | 0.853408 | 2.44E-61 | -1.69E-46 |
| MS.gene050551 | MS.gene60399 | 0.804831 | 1.79E-49 | -1.69E-46 |
| MS.gene050646 | MS.gene60399 | 0.882081 | 1.40E-70 | -1.69E-46 |
| MS.gene050654 | MS.gene60399 | 0.841117 | 5.77E-58 | -1.69E-46 |
| MS.gene050689 | MS.gene60399 | 0.836224 | 1.06E-56 | -1.69E-46 |
| MS.gene050838 | MS.gene60399 | 0.802911 | 4.48E-49 | -1.69E-46 |
| MS.gene050931 | MS.gene60399 | 0.806529 | 7.87E-50 | -1.69E-46 |
| MS.gene050941 | MS.gene60399 | 0.818071 | 2.37E-52 | -1.69E-46 |
| MS.gene050945 | MS.gene60399 | 0.833573 | 4.94E-56 | -1.69E-46 |
| MS.gene051003 | MS.gene60399 | 0.829224 | 5.80E-55 | -1.69E-46 |
| MS.gene051043 | MS.gene60399 | 0.802382 | 5.76E-49 | -1.69E-46 |
| MS.gene051102 | MS.gene60399 | 0.803392 | 3.56E-49 | -1.69E-46 |
| MS.gene051184 | MS.gene60399 | 0.802037 | 6.78E-49 | -1.69E-46 |
| MS.gene051233 | MS.gene60399 | 0.80781 | 4.21E-50 | -1.69E-46 |
| MS.gene051234 | MS.gene60399 | 0.827162 | 1.82E-54 | -1.69E-46 |
| MS.gene051343 | MS.gene60399 | 0.851979 | 6.24E-61 | -1.69E-46 |
| MS.gene051365 | MS.gene60399 | 0.809513 | 1.82E-50 | -1.69E-46 |
| MS.gene051381 | MS.gene60399 | 0.841783 | 3.85E-58 | -1.69E-46 |
| MS.gene051724 | MS.gene60399 | 0.81609 | 6.61E-52 | -1.69E-46 |
| MS.gene051856 | MS.gene60399 | 0.841551 | 4.44E-58 | -1.69E-46 |
| MS.gene052072 | MS.gene60399 | 0.850471 | 1.66E-60 | -1.69E-46 |
| MS.gene052242 | MS.gene60399 | -0.828177 | 1.04E-54 | -1.69E-46 |
| MS.gene052296 | MS.gene60399 | 0.804432 | 2.17E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene60399 | 0.863479 | 2.42E-64 | -1.69E-46 |
| MS.gene052335 | MS.gene60399 | 0.845805 | 3.23E-59 | -1.69E-46 |
| MS.gene052342 | MS.gene60399 | 0.807968 | 3.90E-50 | -1.69E-46 |
| MS.gene052463 | MS.gene60399 | 0.804542 | 2.06E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene60399 | 0.803587 | 3.25E-49 | -1.69E-46 |
| MS.gene052533 | MS.gene60399 | 0.808086 | 3.68E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene60399 | 0.862693 | 4.23E-64 | -1.69E-46 |
| MS.gene052932 | MS.gene60399 | 0.822795 | 1.96E-53 | -1.69E-46 |
| MS.gene052954 | MS.gene60399 | 0.808464 | 3.06E-50 | -1.69E-46 |
| MS.gene053058 | MS.gene60399 | 0.825058 | 5.77E-54 | -1.69E-46 |
| MS.gene053079 | MS.gene60399 | 0.83187 | 1.31E-55 | -1.69E-46 |
| MS.gene053143 | MS.gene60399 | 0.822856 | 1.89E-53 | -1.69E-46 |
| MS.gene053456 | MS.gene60399 | 0.803908 | 2.78E-49 | -1.69E-46 |
| MS.gene053575 | MS.gene60399 | 0.829617 | 4.66E-55 | -1.69E-46 |
| MS.gene053726 | MS.gene60399 | 0.826985 | 2.01E-54 | -1.69E-46 |
| MS.gene053879 | MS.gene60399 | 0.800901 | 1.16E-48 | -1.69E-46 |
| MS.gene053931 | MS.gene60399 | 0.818327 | 2.08E-52 | -1.69E-46 |
| MS.gene054004 | MS.gene60399 | 0.800865 | 1.18E-48 | -1.69E-46 |
| MS.gene054479 | MS.gene60399 | 0.807238 | 5.57E-50 | -1.69E-46 |
| MS.gene054709 | MS.gene60399 | 0.839483 | 1.54E-57 | -1.69E-46 |
| MS.gene054892 | MS.gene60399 | 0.823315 | 1.48E-53 | -1.69E-46 |
| MS.gene054893 | MS.gene60399 | 0.826917 | 2.09E-54 | -1.69E-46 |
| MS.gene055513 | MS.gene60399 | 0.822255 | 2.61E-53 | -1.69E-46 |
| MS.gene055841 | MS.gene60399 | 0.800038 | 1.74E-48 | -1.69E-46 |
| MS.gene055864 | MS.gene60399 | 0.804942 | 1.70E-49 | -1.69E-46 |
| MS.gene056045 | MS.gene60399 | 0.829862 | 4.06E-55 | -1.69E-46 |
| MS.gene056097 | MS.gene60399 | 0.830675 | 2.57E-55 | -1.69E-46 |
| MS.gene05615 | MS.gene60399 | 0.806218 | 9.15E-50 | -1.69E-46 |
| MS.gene056181 | MS.gene60399 | 0.837602 | 4.72E-57 | -1.69E-46 |
| MS.gene056578 | MS.gene60399 | 0.840414 | 8.82E-58 | -1.69E-46 |
| MS.gene056699 | MS.gene60399 | 0.825245 | 5.21E-54 | -1.69E-46 |
| MS.gene056787 | MS.gene60399 | 0.822486 | 2.31E-53 | -1.69E-46 |
| MS.gene056849 | MS.gene60399 | 0.800098 | 1.69E-48 | -1.69E-46 |
| MS.gene057034 | MS.gene60399 | 0.806488 | 8.03E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene60399 | 0.817613 | 3.01E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene60399 | 0.802801 | 4.72E-49 | -1.69E-46 |
| MS.gene057371 | MS.gene60399 | 0.802906 | 4.49E-49 | -1.69E-46 |
| MS.gene057392 | MS.gene60399 | 0.80503 | 1.63E-49 | -1.69E-46 |
| MS.gene057919 | MS.gene60399 | 0.81066 | 1.03E-50 | -1.69E-46 |
| MS.gene058008 | MS.gene60399 | 0.857393 | 1.68E-62 | -1.69E-46 |
| MS.gene058009 | MS.gene60399 | 0.841544 | 4.46E-58 | -1.69E-46 |
| MS.gene058010 | MS.gene60399 | 0.840944 | 6.41E-58 | -1.69E-46 |
| MS.gene058054 | MS.gene60399 | 0.848146 | 7.38E-60 | -1.69E-46 |
| MS.gene058055 | MS.gene60399 | 0.808982 | 2.37E-50 | -1.69E-46 |
| MS.gene058159 | MS.gene60399 | 0.804809 | 1.81E-49 | -1.69E-46 |
| MS.gene058278 | MS.gene60399 | 0.803879 | 2.82E-49 | -1.69E-46 |
| MS.gene058292 | MS.gene60399 | 0.836565 | 8.68E-57 | -1.69E-46 |
| MS.gene058639 | MS.gene60399 | 0.802124 | 6.51E-49 | -1.69E-46 |
| MS.gene058781 | MS.gene60399 | 0.81617 | 6.35E-52 | -1.69E-46 |
| MS.gene059007 | MS.gene60399 | 0.838462 | 2.84E-57 | -1.69E-46 |
| MS.gene059146 | MS.gene60399 | 0.825511 | 4.50E-54 | -1.69E-46 |
| MS.gene05978 | MS.gene60399 | 0.815214 | 1.04E-51 | -1.69E-46 |
| MS.gene059965 | MS.gene60399 | 0.82276 | 1.99E-53 | -1.69E-46 |
| MS.gene060259 | MS.gene60399 | 0.806664 | 7.37E-50 | -1.69E-46 |
| MS.gene060840 | MS.gene60399 | 0.80151 | 8.70E-49 | -1.69E-46 |
| MS.gene060932 | MS.gene60399 | 0.803523 | 3.35E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene60399 | 0.853552 | 2.22E-61 | -1.69E-46 |
| MS.gene060935 | MS.gene60399 | 0.849588 | 2.94E-60 | -1.69E-46 |
| MS.gene060937 | MS.gene60399 | 0.861936 | 7.23E-64 | -1.69E-46 |
| MS.gene061100 | MS.gene60399 | 0.822477 | 2.32E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60399.t1 | MTR_4g098560 | 99.367 | 474 | 3 | 0 | 28 | 501 | 264 | 737 | 0.0 | 957 |
| MS.gene60399.t1 | MTR_4g114950 | 82.857 | 315 | 27 | 3 | 1 | 302 | 1 | 301 | 3.37e-169 | 479 |
| MS.gene60399.t1 | MTR_2g020870 | 42.297 | 357 | 193 | 4 | 153 | 496 | 519 | 875 | 5.40e-77 | 259 |
| MS.gene60399.t1 | MTR_2g020870 | 50.829 | 181 | 86 | 1 | 153 | 333 | 519 | 696 | 2.90e-44 | 167 |
| MS.gene60399.t1 | MTR_1g089740 | 27.168 | 346 | 233 | 4 | 154 | 495 | 404 | 734 | 4.23e-32 | 130 |
| MS.gene60399.t1 | MTR_1g089740 | 27.168 | 346 | 233 | 4 | 154 | 495 | 429 | 759 | 4.45e-32 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60399.t1 | AT2G35330 | 52.548 | 569 | 194 | 9 | 2 | 501 | 150 | 711 | 4.85e-169 | 494 |
| MS.gene60399.t1 | AT2G35330 | 52.548 | 569 | 194 | 9 | 2 | 501 | 177 | 738 | 1.86e-168 | 494 |
| MS.gene60399.t1 | AT1G32530 | 51.042 | 576 | 193 | 11 | 2 | 501 | 149 | 711 | 9.62e-156 | 460 |
| MS.gene60399.t1 | AT4G03000 | 35.933 | 359 | 207 | 6 | 154 | 496 | 458 | 809 | 2.52e-58 | 207 |
| MS.gene60399.t1 | AT4G03000 | 35.933 | 359 | 207 | 6 | 154 | 496 | 458 | 809 | 2.52e-58 | 207 |
| MS.gene60399.t1 | AT1G03365 | 35.088 | 342 | 209 | 2 | 154 | 495 | 488 | 816 | 3.45e-52 | 189 |
| MS.gene60399.t1 | AT1G03365 | 35.088 | 342 | 209 | 2 | 154 | 495 | 488 | 816 | 3.45e-52 | 189 |
| MS.gene60399.t1 | AT4G03000 | 38.333 | 180 | 111 | 0 | 154 | 333 | 458 | 637 | 8.02e-30 | 124 |
| MS.gene60399.t1 | AT4G03000 | 38.333 | 180 | 111 | 0 | 154 | 333 | 458 | 637 | 8.37e-30 | 123 |
| MS.gene60399.t1 | AT4G03000 | 38.333 | 180 | 111 | 0 | 154 | 333 | 458 | 637 | 8.37e-30 | 123 |
| MS.gene60399.t1 | AT4G03000 | 38.333 | 180 | 111 | 0 | 154 | 333 | 458 | 637 | 9.31e-30 | 124 |
Find 132 sgRNAs with CRISPR-Local
Find 269 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTCCCTTTCTTCAATTTC+TGG | 0.004804 | 8.1:+24221334 | None:intergenic |
| TTGGATTCTCCGGTTGTATC+TGG | 0.155255 | 8.1:-24221648 | MS.gene60399:CDS |
| CGACTCTGATGCACTTAATT+TGG | 0.180809 | 8.1:+24221167 | None:intergenic |
| CTTGAATCTTGATGAAAATT+TGG | 0.183926 | 8.1:-24221538 | MS.gene60399:CDS |
| CAGATCGAACAGATGCTTTA+AGG | 0.184682 | 8.1:+24218996 | None:intergenic |
| TTTCATGAGGGGTGGGGATT+TGG | 0.196073 | 8.1:-24221888 | MS.gene60399:CDS |
| CAACAGAGAATCCGTGTATT+TGG | 0.202063 | 8.1:-24218710 | MS.gene60399:CDS |
| TGCTAAGCTGCTTCTGGATT+TGG | 0.237221 | 8.1:-24218903 | MS.gene60399:CDS |
| ATCCTTAATTACAGGCTAAA+TGG | 0.256016 | 8.1:-24219195 | MS.gene60399:intron |
| ATTTCATCAGATAAAGGATT+TGG | 0.274722 | 8.1:-24221472 | MS.gene60399:CDS |
| TCAATCTCCCTCTGCAAAAC+TGG | 0.282329 | 8.1:+24221819 | None:intergenic |
| GACAATTGCTAAGCTGCTTC+TGG | 0.282396 | 8.1:-24218909 | MS.gene60399:CDS |
| CTTTGATGGGTGAAGTATTT+TGG | 0.282543 | 8.1:+24218960 | None:intergenic |
| TTTCCCTTTCTTCAATTTCT+GGG | 0.295767 | 8.1:+24221335 | None:intergenic |
| TCGTAGTGCTGTGTCGAATT+TGG | 0.296261 | 8.1:-24221667 | MS.gene60399:CDS |
| AACAGAGAATCCGTGTATTT+GGG | 0.305584 | 8.1:-24218709 | MS.gene60399:CDS |
| AGGGGTGGGGATTTGGAAAT+GGG | 0.324779 | 8.1:-24221881 | MS.gene60399:CDS |
| CTCTTCAACAAGCACTTCAT+TGG | 0.328174 | 8.1:+24221768 | None:intergenic |
| GCATTTGGAGGAGTATTCTT+TGG | 0.331101 | 8.1:-24222141 | MS.gene60399:CDS |
| TTTCGCTGATTTGAAGCATT+TGG | 0.335418 | 8.1:-24222156 | MS.gene60399:CDS |
| TTAGCAATTGTCTCTCTTTG+AGG | 0.339808 | 8.1:+24218920 | None:intergenic |
| GAGGGGTGGGGATTTGGAAA+TGG | 0.347011 | 8.1:-24221882 | MS.gene60399:CDS |
| TGTACCCTCAAAGTCTTTGA+TGG | 0.348726 | 8.1:+24218946 | None:intergenic |
| TTGGAGGAGTATTCTTTGGC+TGG | 0.358204 | 8.1:-24222137 | MS.gene60399:CDS |
| CCCCTTCGCCTGCAATTGCT+TGG | 0.358244 | 8.1:+24221707 | None:intergenic |
| GGCTTATCAGAAAGCATTGC+AGG | 0.365464 | 8.1:-24221421 | MS.gene60399:CDS |
| ATCTGATTCAGCTGCTTCCT+TGG | 0.367941 | 8.1:+24219114 | None:intergenic |
| GAGTATATTTCATCAGATAA+AGG | 0.368409 | 8.1:-24221478 | MS.gene60399:CDS |
| TTTGAAAGAGAAGATATTAG+AGG | 0.370810 | 8.1:-24221043 | MS.gene60399:CDS |
| CATCTCCGAGAGTCTCTTCA+TGG | 0.375871 | 8.1:+24221293 | None:intergenic |
| AAGGGGAAGGCCAATGTTCC+TGG | 0.377379 | 8.1:-24221690 | MS.gene60399:CDS |
| AGCCCATTCTTTCCGCTCCT+TGG | 0.380485 | 8.1:+24221440 | None:intergenic |
| TGGATTCTCCGGTTGTATCT+GGG | 0.386567 | 8.1:-24221647 | MS.gene60399:CDS |
| GAAATTGAAGAAAGGGAAAC+AGG | 0.404324 | 8.1:-24221331 | MS.gene60399:CDS |
| GAGAAAGATCAAACCTCTTC+GGG | 0.407254 | 8.1:+24221793 | None:intergenic |
| TGATGAAAATTTGGAGTTTG+TGG | 0.423422 | 8.1:-24221529 | MS.gene60399:CDS |
| CTTGAAGAAACTTCTAGCTT+GGG | 0.427350 | 8.1:-24221103 | MS.gene60399:CDS |
| AGCAAACACCAAGCAATTGC+AGG | 0.433045 | 8.1:-24221715 | MS.gene60399:CDS |
| ACTTGAAGAAACTTCTAGCT+TGG | 0.439554 | 8.1:-24221104 | MS.gene60399:CDS |
| CAGCTGAATCAGATAATAAG+AGG | 0.444046 | 8.1:-24219105 | MS.gene60399:CDS |
| GGAGAAAGATCAAACCTCTT+CGG | 0.445672 | 8.1:+24221792 | None:intergenic |
| GGAGTATTCTTTGGCTGGGA+TGG | 0.447957 | 8.1:-24222132 | MS.gene60399:CDS |
| CGCTGATTTGAAGCATTTGG+AGG | 0.451062 | 8.1:-24222153 | MS.gene60399:CDS |
| CAAATACACGGATTCTCTGT+TGG | 0.455039 | 8.1:+24218711 | None:intergenic |
| TTCACCCATCAAAGACTTTG+AGG | 0.458864 | 8.1:-24218951 | MS.gene60399:CDS |
| TGACTGAGCTCAAAACATTA+CGG | 0.460683 | 8.1:-24221374 | MS.gene60399:CDS |
| TGCTTCAAATCAGCGAAAAC+CGG | 0.464549 | 8.1:+24222161 | None:intergenic |
| TGCATTTAGCACACATGACT+TGG | 0.467599 | 8.1:+24218789 | None:intergenic |
| GATGGTGTGTTTGTTGCAAC+AGG | 0.467679 | 8.1:-24222114 | MS.gene60399:intron |
| GGTCAAGTGGACCGTGCAAA+TGG | 0.472634 | 8.1:-24221246 | MS.gene60399:CDS |
| CAATATCCCATTCGCATTCG+TGG | 0.473546 | 8.1:+24221851 | None:intergenic |
| AGGCCAAGGAGCGGAAAGAA+TGG | 0.476091 | 8.1:-24221443 | MS.gene60399:CDS |
| CTCTGATGCACTTAATTTGG+AGG | 0.476899 | 8.1:+24221170 | None:intergenic |
| AGACCCAGAAATTGAAGAAA+GGG | 0.477258 | 8.1:-24221338 | MS.gene60399:CDS |
| TCACCCATCAAAGACTTTGA+GGG | 0.477605 | 8.1:-24218950 | MS.gene60399:CDS |
| TTCAACAAGCACTTCATTGG+CGG | 0.480061 | 8.1:+24221771 | None:intergenic |
| TAAATGGAAGGAGGAGTTGA+AGG | 0.491096 | 8.1:-24219179 | MS.gene60399:CDS |
| TTGATACGTGTGGACACTCT+CGG | 0.491280 | 8.1:-24221611 | MS.gene60399:CDS |
| TTGAACTCGGCAGCAAGGAC+AGG | 0.492369 | 8.1:+24218736 | None:intergenic |
| AATGTTGCCATGTTTGCTGC+TGG | 0.494753 | 8.1:-24221744 | MS.gene60399:CDS |
| GAATATGGATGAGCTTGAAC+CGG | 0.501233 | 8.1:-24222180 | None:intergenic |
| ACAGAAAGCTAAGCTGCAAA+AGG | 0.502215 | 8.1:-24221076 | MS.gene60399:CDS |
| GAGACCCAGAAATTGAAGAA+AGG | 0.503278 | 8.1:-24221339 | MS.gene60399:CDS |
| TTAGATCATCCTTGTGGCGC+TGG | 0.503533 | 8.1:+24219044 | None:intergenic |
| TGGAGGAGTATTCTTTGGCT+GGG | 0.506088 | 8.1:-24222136 | MS.gene60399:CDS |
| GCACCGAGTTCACAGCCTCT+TGG | 0.507080 | 8.1:+24221577 | None:intergenic |
| GGCCAAGGAGCGGAAAGAAT+GGG | 0.512400 | 8.1:-24221442 | MS.gene60399:CDS |
| TGCTGAAATCAGAGCAGAGA+TGG | 0.515753 | 8.1:-24221196 | MS.gene60399:CDS |
| GTACCCTCAAAGTCTTTGAT+GGG | 0.516395 | 8.1:+24218947 | None:intergenic |
| CCACCCTGTAAGTTTCATGA+GGG | 0.516547 | 8.1:-24221900 | MS.gene60399:intron |
| TTCTCTGTTGGATTTGAACT+CGG | 0.517905 | 8.1:+24218723 | None:intergenic |
| ACCAAGCAATTGCAGGCGAA+GGG | 0.521306 | 8.1:-24221708 | MS.gene60399:CDS |
| AATATCCCATTCGCATTCGT+GGG | 0.521313 | 8.1:+24221852 | None:intergenic |
| CTGTAAGTTTCATGAGGGGT+GGG | 0.524003 | 8.1:-24221895 | MS.gene60399:intron |
| TCCACCCTGTAAGTTTCATG+AGG | 0.526508 | 8.1:-24221901 | MS.gene60399:intron |
| GGGGTGGGGATTTGGAAATG+GGG | 0.527002 | 8.1:-24221880 | MS.gene60399:CDS |
| GTTTCAGCCCCAGATACAAC+CGG | 0.528436 | 8.1:+24221639 | None:intergenic |
| AAATTTGGAGTTTGTGGCTG+AGG | 0.529000 | 8.1:-24221523 | MS.gene60399:CDS |
| TGTGTCGAATTTGGATTCTC+CGG | 0.531438 | 8.1:-24221658 | MS.gene60399:CDS |
| CATGAAGAGACTCTCGGAGA+TGG | 0.532852 | 8.1:-24221292 | MS.gene60399:CDS |
| TGATACGTGTGGACACTCTC+GGG | 0.533853 | 8.1:-24221610 | MS.gene60399:CDS |
| TTCTCACAGCTCCATTTGCA+CGG | 0.534333 | 8.1:+24221235 | None:intergenic |
| CACCAAGCAATTGCAGGCGA+AGG | 0.537169 | 8.1:-24221709 | MS.gene60399:CDS |
| GATTACCCCACGAATGCGAA+TGG | 0.537197 | 8.1:-24221858 | MS.gene60399:CDS |
| GCAATTGCAGGCGAAGGGGA+AGG | 0.538678 | 8.1:-24221703 | MS.gene60399:CDS |
| AGTGATGAGTACGGGAAGAA+TGG | 0.541897 | 8.1:-24218767 | MS.gene60399:CDS |
| GAAGGCTCAAGAAGATGCCT+TGG | 0.547605 | 8.1:-24219161 | MS.gene60399:CDS |
| GATGGAGAATGCTTTGAGAA+AGG | 0.547829 | 8.1:-24221274 | MS.gene60399:CDS |
| GGATTCTCCGGTTGTATCTG+GGG | 0.550596 | 8.1:-24221646 | MS.gene60399:CDS |
| TGTAAGTTTCATGAGGGGTG+GGG | 0.551649 | 8.1:-24221894 | MS.gene60399:intron |
| AGAATGCATTATATGTATGA+AGG | 0.554862 | 8.1:-24218846 | MS.gene60399:CDS |
| TGTATCTGGGGCTGAAACCA+CGG | 0.555470 | 8.1:-24221634 | MS.gene60399:CDS |
| TCTAAAACCAGCAGCAAACA+TGG | 0.556498 | 8.1:+24221737 | None:intergenic |
| TGAAGAGGAGCGCCGTTCCA+AGG | 0.558816 | 8.1:-24219131 | MS.gene60399:CDS |
| ATTACCCCACGAATGCGAAT+GGG | 0.561566 | 8.1:-24221857 | MS.gene60399:CDS |
| CACATGACTTGGTGAGCACA+CGG | 0.563461 | 8.1:+24218800 | None:intergenic |
| CCTGTAAGTTTCATGAGGGG+TGG | 0.564269 | 8.1:-24221896 | MS.gene60399:intron |
| TGCCTTGGCACTCGTTGAAG+AGG | 0.564467 | 8.1:-24219146 | MS.gene60399:CDS |
| CACCCTGTAAGTTTCATGAG+GGG | 0.565523 | 8.1:-24221899 | MS.gene60399:intron |
| CTCCTCTTCAACGAGTGCCA+AGG | 0.565852 | 8.1:+24219144 | None:intergenic |
| TAACCAAGAGGCTGTGAACT+CGG | 0.574321 | 8.1:-24221580 | MS.gene60399:CDS |
| ATTCAGCTGCTTCCTTGGAA+CGG | 0.574952 | 8.1:+24219119 | None:intergenic |
| TTAATTACAGGCTAAATGGA+AGG | 0.576922 | 8.1:-24219191 | MS.gene60399:intron |
| GCTAAATGCAGTGATGAGTA+CGG | 0.582217 | 8.1:-24218776 | MS.gene60399:CDS |
| GAGAAAGGCTAGTGGTCAAG+TGG | 0.583903 | 8.1:-24221259 | MS.gene60399:CDS |
| AGCACTACGACCAGGAACAT+TGG | 0.589300 | 8.1:+24221680 | None:intergenic |
| AGCTGAATCAGATAATAAGA+GGG | 0.599087 | 8.1:-24219104 | MS.gene60399:CDS |
| TGAGCTCAAAACATTACGGA+TGG | 0.602903 | 8.1:-24221370 | MS.gene60399:CDS |
| TTCGACACAGCACTACGACC+AGG | 0.603889 | 8.1:+24221672 | None:intergenic |
| GAAAGGGAAACAGGCACTTG+AGG | 0.609973 | 8.1:-24221322 | MS.gene60399:CDS |
| CTAAATGCAGTGATGAGTAC+GGG | 0.613638 | 8.1:-24218775 | MS.gene60399:CDS |
| CAAATTAAGTGCATCAGAGT+CGG | 0.614461 | 8.1:-24221166 | MS.gene60399:CDS |
| CCAAGCAATTGCAGGCGAAG+GGG | 0.618090 | 8.1:-24221707 | MS.gene60399:CDS |
| TGAGTACGGGAAGAATGGTA+AGG | 0.622531 | 8.1:-24218762 | MS.gene60399:CDS |
| ACGAGCATGCCCCAAATACA+CGG | 0.623089 | 8.1:+24218699 | None:intergenic |
| CACAACCATGAAGAGACTCT+CGG | 0.624070 | 8.1:-24221298 | MS.gene60399:CDS |
| ACAGAGAATCCGTGTATTTG+GGG | 0.627894 | 8.1:-24218708 | MS.gene60399:CDS |
| TGGATTTGAACTCGGCAGCA+AGG | 0.632471 | 8.1:+24218731 | None:intergenic |
| TGAAATCAGAGCAGAGATGG+AGG | 0.635617 | 8.1:-24221193 | MS.gene60399:CDS |
| GTCTGCTTAGATCATCCTTG+TGG | 0.636940 | 8.1:+24219038 | None:intergenic |
| ATTAGATTTCCAGCGCCACA+AGG | 0.640698 | 8.1:-24219053 | MS.gene60399:CDS |
| GTTTGTGGCTGAGGATCAGA+AGG | 0.647016 | 8.1:-24221514 | MS.gene60399:CDS |
| ATTACAGGCTAAATGGAAGG+AGG | 0.652771 | 8.1:-24219188 | MS.gene60399:intron |
| GAAACCACGGTTGATACGTG+TGG | 0.654330 | 8.1:-24221621 | MS.gene60399:CDS |
| GGGAGATTGAATTCCCGAAG+AGG | 0.662042 | 8.1:-24221806 | MS.gene60399:CDS |
| ATATCCCATTCGCATTCGTG+GGG | 0.677391 | 8.1:+24221853 | None:intergenic |
| AGCACACGGCAAGAAAACAA+CGG | 0.693474 | 8.1:+24218814 | None:intergenic |
| GCTGAATCAGATAATAAGAG+GGG | 0.694209 | 8.1:-24219103 | MS.gene60399:CDS |
| CTGAATCAGATAATAAGAGG+GGG | 0.702623 | 8.1:-24219102 | MS.gene60399:CDS |
| TCGGGTTGTTGATAACCAAG+AGG | 0.705979 | 8.1:-24221592 | MS.gene60399:CDS |
| AATGCTTTGAGAAAGGCTAG+TGG | 0.716247 | 8.1:-24221267 | MS.gene60399:CDS |
| GTGTCCACACGTATCAACCG+TGG | 0.738404 | 8.1:+24221617 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATAAATAAAATAATAA+GGG | + | chr8.1:24219916-24219935 | None:intergenic | 0.0% |
| !! | TATATATAAATAAAATAATA+AGG | + | chr8.1:24219917-24219936 | None:intergenic | 0.0% |
| !! | AGAATATCAAAATATTTAGA+AGG | + | chr8.1:24221209-24221228 | None:intergenic | 15.0% |
| !! | ATTTGTAATATACACATAAT+TGG | - | chr8.1:24220756-24220775 | MS.gene60399:intron | 15.0% |
| !! | GAATATCAAAATATTTAGAA+GGG | + | chr8.1:24221208-24221227 | None:intergenic | 15.0% |
| !!! | AGGTATTTTCTTATTAATAA+AGG | - | chr8.1:24221349-24221368 | MS.gene60399:CDS | 15.0% |
| !!! | CAAATTATTGTTTTTCTTTT+TGG | + | chr8.1:24221631-24221650 | None:intergenic | 15.0% |
| !! | ATACCTATAGAATATAAGTT+AGG | + | chr8.1:24221335-24221354 | None:intergenic | 20.0% |
| !! | ATTTATTAATCAGTACCATT+AGG | + | chr8.1:24221408-24221427 | None:intergenic | 20.0% |
| !! | ATTTGAAAGATACGTATTAT+TGG | + | chr8.1:24221579-24221598 | None:intergenic | 20.0% |
| !! | TAAGGATTATGCAAAATAAA+TGG | + | chr8.1:24221665-24221684 | None:intergenic | 20.0% |
| !! | TTTATTAATCAGTACCATTA+GGG | + | chr8.1:24221407-24221426 | None:intergenic | 20.0% |
| !!! | ACACATGACTTATTTTAAAA+TGG | - | chr8.1:24221102-24221121 | MS.gene60399:CDS | 20.0% |
| !!! | ATATCACTTTTTAGTGTATT+TGG | - | chr8.1:24221234-24221253 | MS.gene60399:CDS | 20.0% |
| !!! | TGAAACAAGTAATTTTCTTT+GGG | + | chr8.1:24220204-24220223 | None:intergenic | 20.0% |
| !!! | TTGAAACAAGTAATTTTCTT+TGG | + | chr8.1:24220205-24220224 | None:intergenic | 20.0% |
| ! | AGAATGCATTATATGTATGA+AGG | - | chr8.1:24222027-24222046 | MS.gene60399:intron | 25.0% |
| ! | AGTCAACAAAAAGAAAATTC+AGG | + | chr8.1:24221514-24221533 | None:intergenic | 25.0% |
| ! | ATTTCATCAGATAAAGGATT+TGG | - | chr8.1:24219401-24219420 | MS.gene60399:intron | 25.0% |
| ! | CATAGAATGAGTTTATTGAT+CGG | - | chr8.1:24220001-24220020 | MS.gene60399:intron | 25.0% |
| ! | CATTGAATGCATATCTAATT+GGG | - | chr8.1:24220315-24220334 | MS.gene60399:intron | 25.0% |
| ! | CTTGAATCTTGATGAAAATT+TGG | - | chr8.1:24219335-24219354 | MS.gene60399:intron | 25.0% |
| ! | GAGTATATTTCATCAGATAA+AGG | - | chr8.1:24219395-24219414 | MS.gene60399:intron | 25.0% |
| ! | GATCCTAACTTATATTCTAT+AGG | - | chr8.1:24221329-24221348 | MS.gene60399:CDS | 25.0% |
| ! | TAATTGGTATTTGATGCTAA+AGG | - | chr8.1:24220772-24220791 | MS.gene60399:intron | 25.0% |
| ! | TATCAAAATATTTAGAAGGG+AGG | + | chr8.1:24221205-24221224 | None:intergenic | 25.0% |
| ! | TCATTGAATGCATATCTAAT+TGG | - | chr8.1:24220314-24220333 | MS.gene60399:intron | 25.0% |
| ! | TGAACTTTACATGTAGTTTA+CGG | - | chr8.1:24220109-24220128 | MS.gene60399:intron | 25.0% |
| ! | TGTTGGATACAAAAACAAAT+AGG | + | chr8.1:24220924-24220943 | None:intergenic | 25.0% |
| ! | TTTGAAAGAGAAGATATTAG+AGG | - | chr8.1:24219830-24219849 | MS.gene60399:intron | 25.0% |
| ! | TTTGCATAATCCTTAATTAC+AGG | - | chr8.1:24221670-24221689 | MS.gene60399:CDS | 25.0% |
| !! | AACTCAAGTATTTAAAGTTC+AGG | + | chr8.1:24221174-24221193 | None:intergenic | 25.0% |
| !! | AATTGATCGTTTTGTCATAA+AGG | - | chr8.1:24220282-24220301 | MS.gene60399:intron | 25.0% |
| !! | ATATTCATGGGTGTTTATTT+TGG | - | chr8.1:24221264-24221283 | MS.gene60399:CDS | 25.0% |
| !! | ATTGATCGTTTTGTCATAAA+GGG | - | chr8.1:24220283-24220302 | MS.gene60399:intron | 25.0% |
| !! | TGATATTTTCTGTTCCTTTT+TGG | + | chr8.1:24219967-24219986 | None:intergenic | 25.0% |
| !!! | AGCAAACAAGTTTTTTCATA+TGG | + | chr8.1:24221293-24221312 | None:intergenic | 25.0% |
| !!! | AGTATTGACAAACAAAGATA+CGG | + | chr8.1:24220592-24220611 | None:intergenic | 25.0% |
| !!! | TATTTGTTTTTGTATCCAAC+AGG | - | chr8.1:24220923-24220942 | MS.gene60399:intron | 25.0% |
| AAAATGAGTCACACAGATTA+TGG | + | chr8.1:24220068-24220087 | None:intergenic | 30.0% | |
| AAATTACCAGTATGCATCAA+AGG | + | chr8.1:24220429-24220448 | None:intergenic | 30.0% | |
| ACATGTAAAGTTCAACCAAA+TGG | + | chr8.1:24220103-24220122 | None:intergenic | 30.0% | |
| AGCTGAATCAGATAATAAGA+GGG | - | chr8.1:24221769-24221788 | MS.gene60399:CDS | 30.0% | |
| ATCATTGCTAACAAAATCAC+AGG | + | chr8.1:24221544-24221563 | None:intergenic | 30.0% | |
| ATCCTTAATTACAGGCTAAA+TGG | - | chr8.1:24221678-24221697 | MS.gene60399:CDS | 30.0% | |
| ATTCACATTGCATCTATCTT+TGG | + | chr8.1:24220727-24220746 | None:intergenic | 30.0% | |
| GATAAAGGATTTGGAAAAAC+AGG | - | chr8.1:24219410-24219429 | MS.gene60399:intron | 30.0% | |
| GCACACTAATTCAAATTCTA+TGG | - | chr8.1:24220545-24220564 | MS.gene60399:intron | 30.0% | |
| TAATGAGTGATCTTCATGTT+GGG | - | chr8.1:24218824-24218843 | MS.gene60399:CDS | 30.0% | |
| TCCATGCAATTGTAATCTTA+TGG | - | chr8.1:24220898-24220917 | MS.gene60399:intron | 30.0% | |
| TTAATTACAGGCTAAATGGA+AGG | - | chr8.1:24221682-24221701 | MS.gene60399:CDS | 30.0% | |
| TTCAAAATCAGACATCAACA+TGG | - | chr8.1:24220220-24220239 | MS.gene60399:intron | 30.0% | |
| TTCCATTTAGCCTGTAATTA+AGG | + | chr8.1:24221683-24221702 | None:intergenic | 30.0% | |
| TTTCCCTTTCTTCAATTTCT+GGG | + | chr8.1:24219541-24219560 | None:intergenic | 30.0% | |
| TTTGCACATTGAATTCCATT+TGG | - | chr8.1:24220085-24220104 | MS.gene60399:intron | 30.0% | |
| ! | TATTTAAAGTTCAGGTCCTA+CGG | + | chr8.1:24221166-24221185 | None:intergenic | 30.0% |
| ! | TATTTTCTGTTCCTTTTTGG+TGG | + | chr8.1:24219964-24219983 | None:intergenic | 30.0% |
| ! | TGATGAAAATTTGGAGTTTG+TGG | - | chr8.1:24219344-24219363 | MS.gene60399:intron | 30.0% |
| ! | TTAGCAGCTGTATCATATTT+TGG | + | chr8.1:24220680-24220699 | None:intergenic | 30.0% |
| AAACTGTGTCACACTAGTAT+AGG | + | chr8.1:24220246-24220265 | None:intergenic | 35.0% | |
| AACAGAGAATCCGTGTATTT+GGG | - | chr8.1:24222164-24222183 | MS.gene60399:CDS | 35.0% | |
| AACTGAGCCATTGTTTCATA+CGG | - | chr8.1:24220483-24220502 | MS.gene60399:intron | 35.0% | |
| AAGGCACGAAAAAGAAGAAA+AGG | + | chr8.1:24220410-24220429 | None:intergenic | 35.0% | |
| AGACCCAGAAATTGAAGAAA+GGG | - | chr8.1:24219535-24219554 | MS.gene60399:intron | 35.0% | |
| AGATTACAATTGCATGGAAG+AGG | + | chr8.1:24220896-24220915 | None:intergenic | 35.0% | |
| ATTTCCCTTATAGGGAAACT+AGG | + | chr8.1:24221064-24221083 | None:intergenic | 35.0% | |
| ATTTGGTTGCTGCATATTCA+TGG | - | chr8.1:24221251-24221270 | MS.gene60399:CDS | 35.0% | |
| CAAATTAAGTGCATCAGAGT+CGG | - | chr8.1:24219707-24219726 | MS.gene60399:intron | 35.0% | |
| CAGCTGAATCAGATAATAAG+AGG | - | chr8.1:24221768-24221787 | MS.gene60399:CDS | 35.0% | |
| CTAATGAGTGATCTTCATGT+TGG | - | chr8.1:24218823-24218842 | MS.gene60399:CDS | 35.0% | |
| CTCAAGTACTTCTTGATTCT+CGG | - | chr8.1:24220843-24220862 | MS.gene60399:intron | 35.0% | |
| CTGAATCAGATAATAAGAGG+GGG | - | chr8.1:24221771-24221790 | MS.gene60399:CDS | 35.0% | |
| GAAATTGAAGAAAGGGAAAC+AGG | - | chr8.1:24219542-24219561 | MS.gene60399:intron | 35.0% | |
| GAATTATAACCTCTACCTGT+TGG | + | chr8.1:24220941-24220960 | None:intergenic | 35.0% | |
| GCATCACCTTTACTCAAATT+CGG | + | chr8.1:24218790-24218809 | None:intergenic | 35.0% | |
| GCCATAAGATTACAATTGCA+TGG | + | chr8.1:24220902-24220921 | None:intergenic | 35.0% | |
| GCTGAATCAGATAATAAGAG+GGG | - | chr8.1:24221770-24221789 | MS.gene60399:CDS | 35.0% | |
| GTTTCCCTTTCTTCAATTTC+TGG | + | chr8.1:24219542-24219561 | None:intergenic | 35.0% | |
| TGAAGTTTGTGTCAAGACAT+GGG | - | chr8.1:24220514-24220533 | MS.gene60399:intron | 35.0% | |
| TGACTGAGCTCAAAACATTA+CGG | - | chr8.1:24219499-24219518 | MS.gene60399:intron | 35.0% | |
| TTAGCAATTGTCTCTCTTTG+AGG | + | chr8.1:24221956-24221975 | None:intergenic | 35.0% | |
| TTATGTGCCGTATGAAACAA+TGG | + | chr8.1:24220493-24220512 | None:intergenic | 35.0% | |
| TTCTCTGTTGGATTTGAACT+CGG | + | chr8.1:24222153-24222172 | None:intergenic | 35.0% | |
| TTGAAGTTTGTGTCAAGACA+TGG | - | chr8.1:24220513-24220532 | MS.gene60399:intron | 35.0% | |
| TTTCCCTATAAGGGAAATAG+CGG | - | chr8.1:24221066-24221085 | MS.gene60399:CDS | 35.0% | |
| TTTGGTTGCTGCATATTCAT+GGG | - | chr8.1:24221252-24221271 | MS.gene60399:CDS | 35.0% | |
| ! | ACTTGAAGAAACTTCTAGCT+TGG | - | chr8.1:24219769-24219788 | MS.gene60399:intron | 35.0% |
| ! | TGCATCTATCTTTGGTGTAA+TGG | + | chr8.1:24220719-24220738 | None:intergenic | 35.0% |
| ! | TTTTTGTATCCAACAGGTAG+AGG | - | chr8.1:24220929-24220948 | MS.gene60399:intron | 35.0% |
| !! | CTTGAAGAAACTTCTAGCTT+GGG | - | chr8.1:24219770-24219789 | MS.gene60399:intron | 35.0% |
| !! | CTTTGATGGGTGAAGTATTT+TGG | + | chr8.1:24221916-24221935 | None:intergenic | 35.0% |
| !! | TTTCGCTGATTTGAAGCATT+TGG | - | chr8.1:24218717-24218736 | MS.gene60399:CDS | 35.0% |
| AAGTTTGTGTCAAGACATGG+GGG | - | chr8.1:24220516-24220535 | MS.gene60399:intron | 40.0% | |
| AATATCCCATTCGCATTCGT+GGG | + | chr8.1:24219024-24219043 | None:intergenic | 40.0% | |
| ACAAGTAGGAGTTTAAGTCC+TGG | - | chr8.1:24220138-24220157 | MS.gene60399:intron | 40.0% | |
| ACAGAAAGCTAAGCTGCAAA+AGG | - | chr8.1:24219797-24219816 | MS.gene60399:intron | 40.0% | |
| ACAGAGAATCCGTGTATTTG+GGG | - | chr8.1:24222165-24222184 | MS.gene60399:CDS | 40.0% | |
| ACTAATCCCTGTTTGGGAAT+TGG | + | chr8.1:24220170-24220189 | None:intergenic | 40.0% | |
| ACTGTCCTAGTTTCCCTATA+AGG | - | chr8.1:24221056-24221075 | MS.gene60399:CDS | 40.0% | |
| AGATAATAAGAGGGGGTTTG+AGG | - | chr8.1:24221778-24221797 | MS.gene60399:CDS | 40.0% | |
| AGTGCTAATCAATGCCCTAA+TGG | - | chr8.1:24221390-24221409 | MS.gene60399:CDS | 40.0% | |
| ATTACAGGCTAAATGGAAGG+AGG | - | chr8.1:24221685-24221704 | MS.gene60399:CDS | 40.0% | |
| ATTGCTACTATGTTCACCGT+AGG | - | chr8.1:24221147-24221166 | MS.gene60399:CDS | 40.0% | |
| CAAATACACGGATTCTCTGT+TGG | + | chr8.1:24222165-24222184 | None:intergenic | 40.0% | |
| CAACAGAGAATCCGTGTATT+TGG | - | chr8.1:24222163-24222182 | MS.gene60399:CDS | 40.0% | |
| CAAGTAGGAGTTTAAGTCCT+GGG | - | chr8.1:24220139-24220158 | MS.gene60399:intron | 40.0% | |
| CAGATCGAACAGATGCTTTA+AGG | + | chr8.1:24221880-24221899 | None:intergenic | 40.0% | |
| CATTCTGCCATGAACTATTC+TGG | + | chr8.1:24220639-24220658 | None:intergenic | 40.0% | |
| CGACTCTGATGCACTTAATT+TGG | + | chr8.1:24219709-24219728 | None:intergenic | 40.0% | |
| CTAAATGCAGTGATGAGTAC+GGG | - | chr8.1:24222098-24222117 | MS.gene60399:intron | 40.0% | |
| CTCTTCAACAAGCACTTCAT+TGG | + | chr8.1:24219108-24219127 | None:intergenic | 40.0% | |
| CTGTCCTAGTTTCCCTATAA+GGG | - | chr8.1:24221057-24221076 | MS.gene60399:CDS | 40.0% | |
| GAAGTTTGTGTCAAGACATG+GGG | - | chr8.1:24220515-24220534 | MS.gene60399:intron | 40.0% | |
| GAATAGTTCATGGCAGAATG+TGG | - | chr8.1:24220639-24220658 | MS.gene60399:intron | 40.0% | |
| GAGAAAGATCAAACCTCTTC+GGG | + | chr8.1:24219083-24219102 | None:intergenic | 40.0% | |
| GAGACCCAGAAATTGAAGAA+AGG | - | chr8.1:24219534-24219553 | MS.gene60399:intron | 40.0% | |
| GCTAAATGCAGTGATGAGTA+CGG | - | chr8.1:24222097-24222116 | MS.gene60399:intron | 40.0% | |
| GGAGAAAGATCAAACCTCTT+CGG | + | chr8.1:24219084-24219103 | None:intergenic | 40.0% | |
| GTACCCTCAAAGTCTTTGAT+GGG | + | chr8.1:24221929-24221948 | None:intergenic | 40.0% | |
| GTTAGGCCGAATTTGAGTAA+AGG | - | chr8.1:24218781-24218800 | MS.gene60399:CDS | 40.0% | |
| GTTTACGGCTTGAAACAAGT+AGG | - | chr8.1:24220124-24220143 | MS.gene60399:intron | 40.0% | |
| TAAATGGAAGGAGGAGTTGA+AGG | - | chr8.1:24221694-24221713 | MS.gene60399:CDS | 40.0% | |
| TCACCCATCAAAGACTTTGA+GGG | - | chr8.1:24221923-24221942 | MS.gene60399:intron | 40.0% | |
| TGAACCATGTATGCATAGCT+TGG | - | chr8.1:24220454-24220473 | MS.gene60399:intron | 40.0% | |
| TGAGCTCAAAACATTACGGA+TGG | - | chr8.1:24219503-24219522 | MS.gene60399:intron | 40.0% | |
| TGAGTAAAGGTGATGCAATG+TGG | - | chr8.1:24218794-24218813 | MS.gene60399:CDS | 40.0% | |
| TGCATTTAGCACACATGACT+TGG | + | chr8.1:24222087-24222106 | None:intergenic | 40.0% | |
| TGCTTCAAATCAGCGAAAAC+CGG | + | chr8.1:24218715-24218734 | None:intergenic | 40.0% | |
| TGTACCCTCAAAGTCTTTGA+TGG | + | chr8.1:24221930-24221949 | None:intergenic | 40.0% | |
| TGTGTCGAATTTGGATTCTC+CGG | - | chr8.1:24219215-24219234 | MS.gene60399:intron | 40.0% | |
| TTCAACAAGCACTTCATTGG+CGG | + | chr8.1:24219105-24219124 | None:intergenic | 40.0% | |
| TTCACCCATCAAAGACTTTG+AGG | - | chr8.1:24221922-24221941 | MS.gene60399:intron | 40.0% | |
| ! | AAATTTGGAGTTTGTGGCTG+AGG | - | chr8.1:24219350-24219369 | MS.gene60399:intron | 40.0% |
| ! | ATTTTCTTTGGGTGAGACTG+TGG | + | chr8.1:24220193-24220212 | None:intergenic | 40.0% |
| ! | CTCTGATGCACTTAATTTGG+AGG | + | chr8.1:24219706-24219725 | None:intergenic | 40.0% |
| ! | TCTAAAACCAGCAGCAAACA+TGG | + | chr8.1:24219139-24219158 | None:intergenic | 40.0% |
| ! | TGTGTTTGTTGCAACAGGTT+AGG | - | chr8.1:24218764-24218783 | MS.gene60399:CDS | 40.0% |
| !! | AATGCTTTGAGAAAGGCTAG+TGG | - | chr8.1:24219606-24219625 | MS.gene60399:intron | 40.0% |
| !! | GATGGAGAATGCTTTGAGAA+AGG | - | chr8.1:24219599-24219618 | MS.gene60399:intron | 40.0% |
| !! | GCATTTGGAGGAGTATTCTT+TGG | - | chr8.1:24218732-24218751 | MS.gene60399:CDS | 40.0% |
| AATTCTTTAGCCAATGCCCC+TGG | - | chr8.1:24221455-24221474 | MS.gene60399:CDS | 45.0% | |
| ACTATAGAGATTCCTGTGCC+TGG | - | chr8.1:24218856-24218875 | MS.gene60399:CDS | 45.0% | |
| AGCAAACACCAAGCAATTGC+AGG | - | chr8.1:24219158-24219177 | MS.gene60399:CDS | 45.0% | |
| AGCACACGGCAAGAAAACAA+CGG | + | chr8.1:24222062-24222081 | None:intergenic | 45.0% | |
| AGTCATGTGTAGCACACATG+CGG | + | chr8.1:24221092-24221111 | None:intergenic | 45.0% | |
| AGTGATGAGTACGGGAAGAA+TGG | - | chr8.1:24222106-24222125 | MS.gene60399:intron | 45.0% | |
| ATATCCCATTCGCATTCGTG+GGG | + | chr8.1:24219023-24219042 | None:intergenic | 45.0% | |
| ATCTGATTCAGCTGCTTCCT+TGG | + | chr8.1:24221762-24221781 | None:intergenic | 45.0% | |
| ATTACCCCACGAATGCGAAT+GGG | - | chr8.1:24219016-24219035 | MS.gene60399:CDS | 45.0% | |
| ATTAGATTTCCAGCGCCACA+AGG | - | chr8.1:24221820-24221839 | MS.gene60399:CDS | 45.0% | |
| ATTCAGCTGCTTCCTTGGAA+CGG | + | chr8.1:24221757-24221776 | None:intergenic | 45.0% | |
| ATTCTTTAGCCAATGCCCCT+GGG | - | chr8.1:24221456-24221475 | MS.gene60399:CDS | 45.0% | |
| CAATATCCCATTCGCATTCG+TGG | + | chr8.1:24219025-24219044 | None:intergenic | 45.0% | |
| CACAACCATGAAGAGACTCT+CGG | - | chr8.1:24219575-24219594 | MS.gene60399:intron | 45.0% | |
| CACCCCTCATGAAACTTACA+GGG | + | chr8.1:24218979-24218998 | None:intergenic | 45.0% | |
| CACCCTGTAAGTTTCATGAG+GGG | - | chr8.1:24218974-24218993 | MS.gene60399:CDS | 45.0% | |
| CCACACACAAACCACCAAAA+AGG | - | chr8.1:24219950-24219969 | MS.gene60399:intron | 45.0% | |
| CCACCCTGTAAGTTTCATGA+GGG | - | chr8.1:24218973-24218992 | MS.gene60399:CDS | 45.0% | |
| CTATAGAGATTCCTGTGCCT+GGG | - | chr8.1:24218857-24218876 | MS.gene60399:CDS | 45.0% | |
| CTGTAAGTTTCATGAGGGGT+GGG | - | chr8.1:24218978-24218997 | MS.gene60399:CDS | 45.0% | |
| CTTGATTCTCGGCTTCTTCT+TGG | - | chr8.1:24220854-24220873 | MS.gene60399:intron | 45.0% | |
| GACAATTGCTAAGCTGCTTC+TGG | - | chr8.1:24221964-24221983 | MS.gene60399:intron | 45.0% | |
| GCACACACCAGAATAGTTCA+TGG | - | chr8.1:24220629-24220648 | MS.gene60399:intron | 45.0% | |
| GGAAAAGACCTATGAGCAAC+CGG | + | chr8.1:24218955-24218974 | None:intergenic | 45.0% | |
| GGATTTGGAAAAACAGGCCA+AGG | - | chr8.1:24219416-24219435 | MS.gene60399:intron | 45.0% | |
| GTACTAAACCGGTTGCTCAT+AGG | - | chr8.1:24218944-24218963 | MS.gene60399:CDS | 45.0% | |
| GTCTCCAAGCTATGCATACA+TGG | + | chr8.1:24220461-24220480 | None:intergenic | 45.0% | |
| GTCTGCTTAGATCATCCTTG+TGG | + | chr8.1:24221838-24221857 | None:intergenic | 45.0% | |
| GTGTCTTGACTCTTGAGTAC+TGG | + | chr8.1:24220801-24220820 | None:intergenic | 45.0% | |
| TAACCAAGAGGCTGTGAACT+CGG | - | chr8.1:24219293-24219312 | MS.gene60399:intron | 45.0% | |
| TCAATCTCCCTCTGCAAAAC+TGG | + | chr8.1:24219057-24219076 | None:intergenic | 45.0% | |
| TCCACCCTGTAAGTTTCATG+AGG | - | chr8.1:24218972-24218991 | MS.gene60399:CDS | 45.0% | |
| TCGTAGTGCTGTGTCGAATT+TGG | - | chr8.1:24219206-24219225 | MS.gene60399:intron | 45.0% | |
| TGAAATCAGAGCAGAGATGG+AGG | - | chr8.1:24219680-24219699 | MS.gene60399:intron | 45.0% | |
| TGAGTACGGGAAGAATGGTA+AGG | - | chr8.1:24222111-24222130 | MS.gene60399:intron | 45.0% | |
| TGCTAAGCTGCTTCTGGATT+TGG | - | chr8.1:24221970-24221989 | MS.gene60399:intron | 45.0% | |
| TGCTGAAATCAGAGCAGAGA+TGG | - | chr8.1:24219677-24219696 | MS.gene60399:intron | 45.0% | |
| TGGATTCTCCGGTTGTATCT+GGG | - | chr8.1:24219226-24219245 | MS.gene60399:intron | 45.0% | |
| TGGTAAGGCTCGTACTAAAC+CGG | - | chr8.1:24218933-24218952 | MS.gene60399:CDS | 45.0% | |
| TGTAAGTTTCATGAGGGGTG+GGG | - | chr8.1:24218979-24218998 | MS.gene60399:CDS | 45.0% | |
| TTCGTGCCTTTGATGCATAC+TGG | - | chr8.1:24220420-24220439 | MS.gene60399:intron | 45.0% | |
| TTCTCACAGCTCCATTTGCA+CGG | + | chr8.1:24219641-24219660 | None:intergenic | 45.0% | |
| TTGATACGTGTGGACACTCT+CGG | - | chr8.1:24219262-24219281 | MS.gene60399:intron | 45.0% | |
| TTGGATTCTCCGGTTGTATC+TGG | - | chr8.1:24219225-24219244 | MS.gene60399:intron | 45.0% | |
| ! | AATGTTGCCATGTTTGCTGC+TGG | - | chr8.1:24219129-24219148 | MS.gene60399:CDS | 45.0% |
| ! | ACTGTGGACTAATCCCTGTT+TGG | + | chr8.1:24220177-24220196 | None:intergenic | 45.0% |
| ! | AGAGAACCTCGGCTTCTTTT+TGG | + | chr8.1:24219887-24219906 | None:intergenic | 45.0% |
| ! | CTGTGGACTAATCCCTGTTT+GGG | + | chr8.1:24220176-24220195 | None:intergenic | 45.0% |
| ! | GATGGTGTGTTTGTTGCAAC+AGG | - | chr8.1:24218759-24218778 | MS.gene60399:CDS | 45.0% |
| ! | TGTCAAGACATGGGGGTATA+CGG | - | chr8.1:24220523-24220542 | MS.gene60399:intron | 45.0% |
| ! | TTGTGCTCCAGTTTTGCAGA+GGG | - | chr8.1:24219047-24219066 | MS.gene60399:CDS | 45.0% |
| !! | CCTTTTTGGTGGTTTGTGTG+TGG | + | chr8.1:24219953-24219972 | None:intergenic | 45.0% |
| !! | CGCTGATTTGAAGCATTTGG+AGG | - | chr8.1:24218720-24218739 | MS.gene60399:CDS | 45.0% |
| !! | GGCTTATCAGAAAGCATTGC+AGG | - | chr8.1:24219452-24219471 | MS.gene60399:intron | 45.0% |
| !! | TCGGGTTGTTGATAACCAAG+AGG | - | chr8.1:24219281-24219300 | MS.gene60399:intron | 45.0% |
| !! | TGGAGGAGTATTCTTTGGCT+GGG | - | chr8.1:24218737-24218756 | MS.gene60399:CDS | 45.0% |
| !! | TTGGAGGAGTATTCTTTGGC+TGG | - | chr8.1:24218736-24218755 | MS.gene60399:CDS | 45.0% |
| !! | TATATAAATAAAATAATAAG+GGG | + | chr8.1:24219915-24219934 | None:intergenic | 5.0% |
| ACCAAGCAATTGCAGGCGAA+GGG | - | chr8.1:24219165-24219184 | MS.gene60399:CDS | 50.0% | |
| ACGAGCATGCCCCAAATACA+CGG | + | chr8.1:24222177-24222196 | None:intergenic | 50.0% | |
| AGCACTACGACCAGGAACAT+TGG | + | chr8.1:24219196-24219215 | None:intergenic | 50.0% | |
| AGGGGTGGGGATTTGGAAAT+GGG | - | chr8.1:24218992-24219011 | MS.gene60399:CDS | 50.0% | |
| AGTCATGCTAACCAATGCCC+AGG | + | chr8.1:24221476-24221495 | None:intergenic | 50.0% | |
| CATCTCCGAGAGTCTCTTCA+TGG | + | chr8.1:24219583-24219602 | None:intergenic | 50.0% | |
| CATGAAGAGACTCTCGGAGA+TGG | - | chr8.1:24219581-24219600 | MS.gene60399:intron | 50.0% | |
| CCACCCCTCATGAAACTTAC+AGG | + | chr8.1:24218980-24218999 | None:intergenic | 50.0% | |
| CCCTCATGAAACTTACAGGG+TGG | + | chr8.1:24218976-24218995 | None:intergenic | 50.0% | |
| CCTGTAAGTTTCATGAGGGG+TGG | - | chr8.1:24218977-24218996 | MS.gene60399:CDS | 50.0% | |
| GAAAGGGAAACAGGCACTTG+AGG | - | chr8.1:24219551-24219570 | MS.gene60399:intron | 50.0% | |
| GAAGGCTCAAGAAGATGCCT+TGG | - | chr8.1:24221712-24221731 | MS.gene60399:CDS | 50.0% | |
| GAGAAAGGCTAGTGGTCAAG+TGG | - | chr8.1:24219614-24219633 | MS.gene60399:intron | 50.0% | |
| GATTACCCCACGAATGCGAA+TGG | - | chr8.1:24219015-24219034 | MS.gene60399:CDS | 50.0% | |
| GCCAAGCCAATTCCCAAACA+GGG | - | chr8.1:24220161-24220180 | MS.gene60399:intron | 50.0% | |
| GCTGCTGTTGTTGAATCTGG+TGG | - | chr8.1:24218904-24218923 | MS.gene60399:CDS | 50.0% | |
| GCTGTTGTTGAATCTGGTGG+TGG | - | chr8.1:24218907-24218926 | MS.gene60399:CDS | 50.0% | |
| GGAGCTGCTGTTGTTGAATC+TGG | - | chr8.1:24218901-24218920 | MS.gene60399:CDS | 50.0% | |
| GGATTCTCCGGTTGTATCTG+GGG | - | chr8.1:24219227-24219246 | MS.gene60399:intron | 50.0% | |
| GGGAGATTGAATTCCCGAAG+AGG | - | chr8.1:24219067-24219086 | MS.gene60399:CDS | 50.0% | |
| GTCATGCTAACCAATGCCCA+GGG | + | chr8.1:24221475-24221494 | None:intergenic | 50.0% | |
| GTTTCAGCCCCAGATACAAC+CGG | + | chr8.1:24219237-24219256 | None:intergenic | 50.0% | |
| GTTTGTGGCTGAGGATCAGA+AGG | - | chr8.1:24219359-24219378 | MS.gene60399:intron | 50.0% | |
| TCATGCTAACCAATGCCCAG+GGG | + | chr8.1:24221474-24221493 | None:intergenic | 50.0% | |
| TCCCTGTTTGGGAATTGGCT+TGG | + | chr8.1:24220165-24220184 | None:intergenic | 50.0% | |
| TGATACGTGTGGACACTCTC+GGG | - | chr8.1:24219263-24219282 | MS.gene60399:intron | 50.0% | |
| TGGAAAAACAGGCCAAGGAG+CGG | - | chr8.1:24219421-24219440 | MS.gene60399:intron | 50.0% | |
| TGGATTTGAACTCGGCAGCA+AGG | + | chr8.1:24222145-24222164 | None:intergenic | 50.0% | |
| TTAGATCATCCTTGTGGCGC+TGG | + | chr8.1:24221832-24221851 | None:intergenic | 50.0% | |
| TTTCATGAGGGGTGGGGATT+TGG | - | chr8.1:24218985-24219004 | MS.gene60399:CDS | 50.0% | |
| ! | CGGCCGCTATTTCCCTTATA+GGG | + | chr8.1:24221072-24221091 | None:intergenic | 50.0% |
| ! | CTTGTGCTCCAGTTTTGCAG+AGG | - | chr8.1:24219046-24219065 | MS.gene60399:CDS | 50.0% |
| ! | GAAACCACGGTTGATACGTG+TGG | - | chr8.1:24219252-24219271 | MS.gene60399:intron | 50.0% |
| ! | GGAGTATTCTTTGGCTGGGA+TGG | - | chr8.1:24218741-24218760 | MS.gene60399:CDS | 50.0% |
| ! | TGTATCTGGGGCTGAAACCA+CGG | - | chr8.1:24219239-24219258 | MS.gene60399:intron | 50.0% |
| !! | CACATGACTTGGTGAGCACA+CGG | + | chr8.1:24222076-24222095 | None:intergenic | 50.0% |
| !! | GTTGTTGAATCTGGTGGTGG+TGG | - | chr8.1:24218910-24218929 | MS.gene60399:CDS | 50.0% |
| AAGGGGAAGGCCAATGTTCC+TGG | - | chr8.1:24219183-24219202 | MS.gene60399:CDS | 55.0% | |
| AAGGGGCGAAGAGAGAACCT+CGG | + | chr8.1:24219898-24219917 | None:intergenic | 55.0% | |
| AGCCCATTCTTTCCGCTCCT+TGG | + | chr8.1:24219436-24219455 | None:intergenic | 55.0% | |
| AGGCCAAGGAGCGGAAAGAA+TGG | - | chr8.1:24219430-24219449 | MS.gene60399:intron | 55.0% | |
| CACCAAGCAATTGCAGGCGA+AGG | - | chr8.1:24219164-24219183 | MS.gene60399:CDS | 55.0% | |
| CCAAGCAATTGCAGGCGAAG+GGG | - | chr8.1:24219166-24219185 | MS.gene60399:CDS | 55.0% | |
| CTCCTCTTCAACGAGTGCCA+AGG | + | chr8.1:24221732-24221751 | None:intergenic | 55.0% | |
| GAGGGGTGGGGATTTGGAAA+TGG | - | chr8.1:24218991-24219010 | MS.gene60399:CDS | 55.0% | |
| GGCCAAGCCAATTCCCAAAC+AGG | - | chr8.1:24220160-24220179 | MS.gene60399:intron | 55.0% | |
| GGCCAAGGAGCGGAAAGAAT+GGG | - | chr8.1:24219431-24219450 | MS.gene60399:intron | 55.0% | |
| GGGGTGGGGATTTGGAAATG+GGG | - | chr8.1:24218993-24219012 | MS.gene60399:CDS | 55.0% | |
| GGTCAAGTGGACCGTGCAAA+TGG | - | chr8.1:24219627-24219646 | MS.gene60399:intron | 55.0% | |
| GTGTCCACACGTATCAACCG+TGG | + | chr8.1:24219259-24219278 | None:intergenic | 55.0% | |
| TGCCTTGGCACTCGTTGAAG+AGG | - | chr8.1:24221727-24221746 | MS.gene60399:CDS | 55.0% | |
| TTCGACACAGCACTACGACC+AGG | + | chr8.1:24219204-24219223 | None:intergenic | 55.0% | |
| TTGAACTCGGCAGCAAGGAC+AGG | + | chr8.1:24222140-24222159 | None:intergenic | 55.0% | |
| ! | GCGGCCGCTATTTCCCTTAT+AGG | + | chr8.1:24221073-24221092 | None:intergenic | 55.0% |
| ! | TAACCAATGCCCAGGGGCAT+TGG | + | chr8.1:24221468-24221487 | None:intergenic | 55.0% |
| !! | ATCTGGTGGTGGTGGTGGTA+AGG | - | chr8.1:24218918-24218937 | MS.gene60399:CDS | 55.0% |
| !! | GTTGAATCTGGTGGTGGTGG+TGG | - | chr8.1:24218913-24218932 | MS.gene60399:CDS | 55.0% |
| !! | TTTGGGAATTGGCTTGGCCC+AGG | + | chr8.1:24220159-24220178 | None:intergenic | 55.0% |
| CCCCTTCGCCTGCAATTGCT+TGG | + | chr8.1:24219169-24219188 | None:intergenic | 60.0% | |
| GCAATTGCAGGCGAAGGGGA+AGG | - | chr8.1:24219170-24219189 | MS.gene60399:CDS | 60.0% | |
| GCACCGAGTTCACAGCCTCT+TGG | + | chr8.1:24219299-24219318 | None:intergenic | 60.0% | |
| GCAGCGCCAAAAAGAAGCCG+AGG | - | chr8.1:24219878-24219897 | MS.gene60399:intron | 60.0% | |
| TAGCCAATGCCCCTGGGCAT+TGG | - | chr8.1:24221462-24221481 | MS.gene60399:CDS | 60.0% | |
| !! | TGAAGAGGAGCGCCGTTCCA+AGG | - | chr8.1:24221742-24221761 | MS.gene60399:CDS | 60.0% |
| ! | TGTGCCTGGGAGTGCGAGTG+CGG | - | chr8.1:24218870-24218889 | MS.gene60399:CDS | 65.0% |
| AGTGCGAGTGCGGGTGCGAG+GGG | - | chr8.1:24218880-24218899 | MS.gene60399:CDS | 70.0% | |
| GAGTGCGAGTGCGGGTGCGA+GGG | - | chr8.1:24218879-24218898 | MS.gene60399:CDS | 70.0% | |
| GCACTCGCACTCCCAGGCAC+AGG | + | chr8.1:24218871-24218890 | None:intergenic | 70.0% | |
| ! | GTGCCTGGGAGTGCGAGTGC+GGG | - | chr8.1:24218871-24218890 | MS.gene60399:CDS | 70.0% |
| GCACCCGCACTCGCACTCCC+AGG | + | chr8.1:24218877-24218896 | None:intergenic | 75.0% | |
| GGAGTGCGAGTGCGGGTGCG+AGG | - | chr8.1:24218878-24218897 | MS.gene60399:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 24218697 | 24222198 | 24218697 | ID=MS.gene60399 |
| chr8.1 | mRNA | 24218697 | 24222198 | 24218697 | ID=MS.gene60399.t1;Parent=MS.gene60399 |
| chr8.1 | exon | 24222115 | 24222198 | 24222115 | ID=MS.gene60399.t1.exon1;Parent=MS.gene60399.t1 |
| chr8.1 | CDS | 24222115 | 24222198 | 24222115 | ID=cds.MS.gene60399.t1;Parent=MS.gene60399.t1 |
| chr8.1 | exon | 24220996 | 24221910 | 24220996 | ID=MS.gene60399.t1.exon2;Parent=MS.gene60399.t1 |
| chr8.1 | CDS | 24220996 | 24221910 | 24220996 | ID=cds.MS.gene60399.t1;Parent=MS.gene60399.t1 |
| chr8.1 | exon | 24218697 | 24219203 | 24218697 | ID=MS.gene60399.t1.exon3;Parent=MS.gene60399.t1 |
| chr8.1 | CDS | 24218697 | 24219203 | 24218697 | ID=cds.MS.gene60399.t1;Parent=MS.gene60399.t1 |
| Gene Sequence |
| Protein sequence |
