Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67819.t1 | XP_003594693.1 | 94.6 | 297 | 16 | 0 | 1 | 297 | 1 | 297 | 2.90E-161 | 577.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67819.t1 | P22242 | 57.9 | 292 | 107 | 4 | 11 | 287 | 8 | 298 | 5.9e-86 | 318.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67819.t1 | A2Q669 | 94.6 | 297 | 16 | 0 | 1 | 297 | 1 | 297 | 2.1e-161 | 577.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene67819 | -0.801288 | 9.67E-49 | -1.69E-46 |
| MS.gene049222 | MS.gene67819 | -0.802235 | 6.18E-49 | -1.69E-46 |
| MS.gene049232 | MS.gene67819 | -0.804862 | 1.76E-49 | -1.69E-46 |
| MS.gene049281 | MS.gene67819 | 0.84827 | 6.82E-60 | -1.69E-46 |
| MS.gene049285 | MS.gene67819 | -0.810223 | 1.28E-50 | -1.69E-46 |
| MS.gene049320 | MS.gene67819 | -0.819951 | 8.87E-53 | -1.69E-46 |
| MS.gene049611 | MS.gene67819 | 0.830072 | 3.61E-55 | -1.69E-46 |
| MS.gene050082 | MS.gene67819 | 0.821514 | 3.88E-53 | -1.69E-46 |
| MS.gene05010 | MS.gene67819 | -0.805194 | 1.50E-49 | -1.69E-46 |
| MS.gene050165 | MS.gene67819 | -0.802489 | 5.48E-49 | -1.69E-46 |
| MS.gene050170 | MS.gene67819 | -0.807135 | 5.86E-50 | -1.69E-46 |
| MS.gene050323 | MS.gene67819 | -0.820877 | 5.44E-53 | -1.69E-46 |
| MS.gene050381 | MS.gene67819 | 0.842476 | 2.53E-58 | -1.69E-46 |
| MS.gene050496 | MS.gene67819 | -0.845225 | 4.64E-59 | -1.69E-46 |
| MS.gene050504 | MS.gene67819 | -0.824686 | 7.06E-54 | -1.69E-46 |
| MS.gene050612 | MS.gene67819 | -0.818156 | 2.27E-52 | -1.69E-46 |
| MS.gene050675 | MS.gene67819 | -0.81836 | 2.04E-52 | -1.69E-46 |
| MS.gene050772 | MS.gene67819 | -0.80229 | 6.02E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene67819 | -0.829852 | 4.08E-55 | -1.69E-46 |
| MS.gene050871 | MS.gene67819 | -0.827712 | 1.34E-54 | -1.69E-46 |
| MS.gene050986 | MS.gene67819 | -0.803042 | 4.21E-49 | -1.69E-46 |
| MS.gene051044 | MS.gene67819 | 0.860275 | 2.31E-63 | -1.69E-46 |
| MS.gene05104 | MS.gene67819 | 0.825137 | 5.52E-54 | -1.69E-46 |
| MS.gene051127 | MS.gene67819 | 0.824384 | 8.31E-54 | -1.69E-46 |
| MS.gene051138 | MS.gene67819 | 0.834526 | 2.85E-56 | -1.69E-46 |
| MS.gene051268 | MS.gene67819 | -0.817073 | 3.98E-52 | -1.69E-46 |
| MS.gene051364 | MS.gene67819 | 0.83895 | 2.12E-57 | -1.69E-46 |
| MS.gene051366 | MS.gene67819 | 0.838933 | 2.14E-57 | -1.69E-46 |
| MS.gene051367 | MS.gene67819 | 0.802767 | 4.80E-49 | -1.69E-46 |
| MS.gene051422 | MS.gene67819 | 0.824768 | 6.75E-54 | -1.69E-46 |
| MS.gene051632 | MS.gene67819 | 0.802369 | 5.80E-49 | -1.69E-46 |
| MS.gene051651 | MS.gene67819 | 0.813219 | 2.86E-51 | -1.69E-46 |
| MS.gene051874 | MS.gene67819 | -0.800613 | 1.33E-48 | -1.69E-46 |
| MS.gene052916 | MS.gene67819 | -0.811734 | 6.04E-51 | -1.69E-46 |
| MS.gene053069 | MS.gene67819 | 0.813412 | 2.59E-51 | -1.69E-46 |
| MS.gene053420 | MS.gene67819 | 0.862228 | 5.88E-64 | -1.69E-46 |
| MS.gene053488 | MS.gene67819 | 0.80391 | 2.78E-49 | -1.69E-46 |
| MS.gene053887 | MS.gene67819 | 0.806121 | 9.59E-50 | -1.69E-46 |
| MS.gene054056 | MS.gene67819 | 0.844272 | 8.38E-59 | -1.69E-46 |
| MS.gene054642 | MS.gene67819 | -0.802812 | 4.70E-49 | -1.69E-46 |
| MS.gene054706 | MS.gene67819 | 0.804712 | 1.89E-49 | -1.69E-46 |
| MS.gene05483 | MS.gene67819 | 0.811535 | 6.67E-51 | -1.69E-46 |
| MS.gene054954 | MS.gene67819 | -0.822136 | 2.78E-53 | -1.69E-46 |
| MS.gene054959 | MS.gene67819 | 0.839958 | 1.16E-57 | -1.69E-46 |
| MS.gene055154 | MS.gene67819 | 0.837421 | 5.25E-57 | -1.69E-46 |
| MS.gene055202 | MS.gene67819 | 0.804715 | 1.89E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene67819 | -0.817793 | 2.74E-52 | -1.69E-46 |
| MS.gene055502 | MS.gene67819 | -0.804694 | 1.91E-49 | -1.69E-46 |
| MS.gene055577 | MS.gene67819 | -0.814397 | 1.57E-51 | -1.69E-46 |
| MS.gene055751 | MS.gene67819 | -0.805392 | 1.36E-49 | -1.69E-46 |
| MS.gene055776 | MS.gene67819 | -0.800542 | 1.37E-48 | -1.69E-46 |
| MS.gene05589 | MS.gene67819 | -0.825 | 5.95E-54 | -1.69E-46 |
| MS.gene055942 | MS.gene67819 | 0.84812 | 7.50E-60 | -1.69E-46 |
| MS.gene056224 | MS.gene67819 | 0.8084 | 3.16E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene67819 | -0.840154 | 1.03E-57 | -1.69E-46 |
| MS.gene056657 | MS.gene67819 | -0.809383 | 1.94E-50 | -1.69E-46 |
| MS.gene056692 | MS.gene67819 | -0.812171 | 4.85E-51 | -1.69E-46 |
| MS.gene056761 | MS.gene67819 | 0.813004 | 3.19E-51 | -1.69E-46 |
| MS.gene056856 | MS.gene67819 | 0.840903 | 6.57E-58 | -1.69E-46 |
| MS.gene056857 | MS.gene67819 | 0.807823 | 4.19E-50 | -1.69E-46 |
| MS.gene057549 | MS.gene67819 | 0.823767 | 1.16E-53 | -1.69E-46 |
| MS.gene058067 | MS.gene67819 | 0.823171 | 1.60E-53 | -1.69E-46 |
| MS.gene058068 | MS.gene67819 | 0.838794 | 2.33E-57 | -1.69E-46 |
| MS.gene058099 | MS.gene67819 | 0.848498 | 5.90E-60 | -1.69E-46 |
| MS.gene058109 | MS.gene67819 | 0.821512 | 3.88E-53 | -1.69E-46 |
| MS.gene058117 | MS.gene67819 | 0.81134 | 7.35E-51 | -1.69E-46 |
| MS.gene058157 | MS.gene67819 | -0.802319 | 5.94E-49 | -1.69E-46 |
| MS.gene058268 | MS.gene67819 | 0.982687 | 9.71E-156 | -1.69E-46 |
| MS.gene058269 | MS.gene67819 | 0.966976 | 1.21E-126 | -1.69E-46 |
| MS.gene058334 | MS.gene67819 | 0.802053 | 6.73E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene67819 | -0.805442 | 1.33E-49 | -1.69E-46 |
| MS.gene058603 | MS.gene67819 | 0.804485 | 2.11E-49 | -1.69E-46 |
| MS.gene059022 | MS.gene67819 | -0.83646 | 9.24E-57 | -1.69E-46 |
| MS.gene059045 | MS.gene67819 | 0.81047 | 1.13E-50 | -1.69E-46 |
| MS.gene059315 | MS.gene67819 | 0.804534 | 2.06E-49 | -1.69E-46 |
| MS.gene059677 | MS.gene67819 | -0.820935 | 5.27E-53 | -1.69E-46 |
| MS.gene059718 | MS.gene67819 | -0.810301 | 1.23E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene67819 | -0.838099 | 3.52E-57 | -1.69E-46 |
| MS.gene059953 | MS.gene67819 | 0.815999 | 6.93E-52 | -1.69E-46 |
| MS.gene060595 | MS.gene67819 | 0.821072 | 4.90E-53 | -1.69E-46 |
| MS.gene060703 | MS.gene67819 | -0.807498 | 4.91E-50 | -1.69E-46 |
| MS.gene060762 | MS.gene67819 | -0.816333 | 5.84E-52 | -1.69E-46 |
| MS.gene060778 | MS.gene67819 | -0.820583 | 6.35E-53 | -1.69E-46 |
| MS.gene06077 | MS.gene67819 | -0.818883 | 1.55E-52 | -1.69E-46 |
| MS.gene060982 | MS.gene67819 | -0.810408 | 1.17E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67819.t1 | MTR_2g033550 | 94.613 | 297 | 16 | 0 | 1 | 297 | 1 | 297 | 0.0 | 573 |
| MS.gene67819.t1 | MTR_2g033580 | 77.667 | 300 | 60 | 2 | 1 | 294 | 1 | 299 | 2.17e-172 | 479 |
| MS.gene67819.t1 | MTR_2g033520 | 69.868 | 302 | 77 | 3 | 1 | 294 | 1 | 296 | 5.46e-144 | 407 |
| MS.gene67819.t1 | MTR_4g122940 | 67.918 | 293 | 75 | 4 | 11 | 291 | 6 | 291 | 3.63e-134 | 382 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67819.t1 | AT1G47980 | 64.583 | 288 | 85 | 2 | 20 | 295 | 28 | 310 | 8.97e-124 | 356 |
| MS.gene67819.t1 | AT3G62730 | 54.915 | 295 | 120 | 2 | 13 | 294 | 7 | 301 | 2.38e-101 | 300 |
| MS.gene67819.t1 | AT3G62730 | 53.416 | 161 | 72 | 1 | 26 | 186 | 23 | 180 | 2.81e-51 | 168 |
Find 75 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCTTAATTTAGAATATT+TGG | 0.125218 | 2.4:-57029875 | MS.gene67819:CDS |
| TGTACCCAGTTTGGCCATTT+TGG | 0.134807 | 2.4:+57029762 | None:intergenic |
| CATGAATAAGAACATGATTT+TGG | 0.148146 | 2.4:+57029943 | None:intergenic |
| CAGCTAGTTGCAGGCCTTCT+AGG | 0.184241 | 2.4:-57028994 | MS.gene67819:CDS |
| TCATCATCTGAAAATGTTTC+TGG | 0.229501 | 2.4:+57029910 | None:intergenic |
| AAGGATATTATCTTGCAATT+TGG | 0.237243 | 2.4:-57029733 | MS.gene67819:CDS |
| CAAACTGGGTACATTTATTA+AGG | 0.242603 | 2.4:-57029752 | MS.gene67819:CDS |
| CCCACCTATTGGGGCCAAAA+TGG | 0.283148 | 2.4:-57029776 | MS.gene67819:CDS |
| TGGGGCCAAAATGGCCAAAC+TGG | 0.309884 | 2.4:-57029767 | MS.gene67819:CDS |
| TCCAAATATTCTAAATTAAG+AGG | 0.316594 | 2.4:+57029874 | None:intergenic |
| TCAGCGCTTAGGAATGAATT+AGG | 0.319413 | 2.4:-57028865 | MS.gene67819:CDS |
| CTTAATAAATGTACCCAGTT+TGG | 0.325391 | 2.4:+57029753 | None:intergenic |
| ATTCCTTATGTCGGTCTTAC+CGG | 0.330047 | 2.4:-57029385 | MS.gene67819:CDS |
| GAAATATTGAGAATTGTATA+TGG | 0.347955 | 2.4:-57028757 | MS.gene67819:CDS |
| ACAATTCTCAATATTTCAAT+TGG | 0.353451 | 2.4:+57028763 | None:intergenic |
| ATCTCAGGAAATATCCTTGC+TGG | 0.373800 | 2.4:-57028817 | MS.gene67819:CDS |
| TTGACTCTCTTGATGTAATT+CGG | 0.375624 | 2.4:+57030006 | None:intergenic |
| CAATTTGGTTTGCAAGAAGT+TGG | 0.389960 | 2.4:-57029718 | MS.gene67819:CDS |
| GCATGGAAGGTGTATCCTTA+TGG | 0.391268 | 2.4:-57028919 | MS.gene67819:CDS |
| TGGATTGGATGTAGTTGATT+CGG | 0.408733 | 2.4:-57029818 | MS.gene67819:CDS |
| CTTAGATCCATACATGGCCT+TGG | 0.431043 | 2.4:+57029514 | None:intergenic |
| AAGTTGACATCATTTGCATA+TGG | 0.448703 | 2.4:+57029427 | None:intergenic |
| GGGGTTCCCAAGGCCATGTA+TGG | 0.457536 | 2.4:-57029521 | MS.gene67819:CDS |
| GGCCTTCTAGGAGTGGAATC+AGG | 0.458196 | 2.4:-57028982 | MS.gene67819:CDS |
| GGCCTGATTCCACTCCTAGA+AGG | 0.458732 | 2.4:+57028980 | None:intergenic |
| TCATTTGCATATGGATCAAA+AGG | 0.461244 | 2.4:+57029436 | None:intergenic |
| AGCAAGGATATTTCCTGAGA+TGG | 0.467561 | 2.4:+57028819 | None:intergenic |
| AAGGTGATGGATAGTGCCTT+TGG | 0.473626 | 2.4:-57029475 | MS.gene67819:CDS |
| TGCAAGAAGTTGGACATTTG+AGG | 0.477314 | 2.4:-57029708 | MS.gene67819:intron |
| TGGATCATTAGGTCATGGAT+TGG | 0.491581 | 2.4:-57029833 | MS.gene67819:CDS |
| TCCTACAAAATGCTACTTCG+AGG | 0.497607 | 2.4:-57029342 | MS.gene67819:CDS |
| GTCGGTCTTACCGGCTATGT+TGG | 0.505513 | 2.4:-57029376 | MS.gene67819:CDS |
| TCTGCCACAGTTACTCCATA+AGG | 0.507698 | 2.4:+57028904 | None:intergenic |
| TTAGATCCATACATGGCCTT+GGG | 0.510288 | 2.4:+57029515 | None:intergenic |
| CTAATCGCATCTCAGCGCTT+AGG | 0.514135 | 2.4:-57028876 | MS.gene67819:CDS |
| GCTATAAAGAGCACAGTGAA+GGG | 0.515388 | 2.4:-57029541 | MS.gene67819:CDS |
| ATCATCATTTGCCAAGGTGA+TGG | 0.516251 | 2.4:-57029488 | MS.gene67819:CDS |
| CCTCTAGGGTAGAAGCCACC+TGG | 0.517093 | 2.4:+57028715 | None:intergenic |
| ATAACACCATCTCCTCCTCT+AGG | 0.519512 | 2.4:+57028700 | None:intergenic |
| ATAAAAGATGAACCCATCTC+AGG | 0.525491 | 2.4:-57028832 | MS.gene67819:CDS |
| GGCTATAAAGAGCACAGTGA+AGG | 0.527779 | 2.4:-57029542 | MS.gene67819:CDS |
| GCAAGGATATTTCCTGAGAT+GGG | 0.529908 | 2.4:+57028820 | None:intergenic |
| GGATCAAAAGGTGGGTGTAG+AGG | 0.531869 | 2.4:+57029448 | None:intergenic |
| TTATTTGGATCATTAGGTCA+TGG | 0.533706 | 2.4:-57029838 | MS.gene67819:CDS |
| TGTTATACGAACGACGTGCA+TGG | 0.542914 | 2.4:-57028936 | MS.gene67819:CDS |
| TGGATTGGTGCCAACATAGC+CGG | 0.545039 | 2.4:+57029366 | None:intergenic |
| TTGAGAATTGTATATGGAAG+TGG | 0.548661 | 2.4:-57028751 | MS.gene67819:CDS |
| GTTGATTCGGATTTAGCAGA+GGG | 0.554995 | 2.4:-57029805 | MS.gene67819:CDS |
| ATACGAACGACGTGCATGGA+AGG | 0.556244 | 2.4:-57028932 | MS.gene67819:CDS |
| TTCTACCCTAGAGGAGGAGA+TGG | 0.561993 | 2.4:-57028706 | MS.gene67819:CDS |
| ATGATCGTATAACTGCATCT+TGG | 0.571142 | 2.4:+57028959 | None:intergenic |
| TAGCCGGTAAGACCGACATA+AGG | 0.572610 | 2.4:+57029382 | None:intergenic |
| CTCTAGGGTAGAAGCCACCT+GGG | 0.572783 | 2.4:+57028716 | None:intergenic |
| GATTCGGATTTAGCAGAGGG+TGG | 0.575302 | 2.4:-57029802 | MS.gene67819:CDS |
| TCTTATGTGATTCCTTATGT+CGG | 0.575588 | 2.4:-57029394 | MS.gene67819:CDS |
| TTTGCATATGGATCAAAAGG+TGG | 0.585853 | 2.4:+57029439 | None:intergenic |
| TCATCTGAAAATGTTTCTGG+TGG | 0.587819 | 2.4:+57029913 | None:intergenic |
| AGTGGTGATGAACATGTCCC+AGG | 0.596378 | 2.4:-57028733 | MS.gene67819:CDS |
| TAACACCATCTCCTCCTCTA+GGG | 0.597219 | 2.4:+57028701 | None:intergenic |
| ACAAAATGCTACTTCGAGGA+AGG | 0.597559 | 2.4:-57029338 | MS.gene67819:intron |
| CCAGGTGGCTTCTACCCTAG+AGG | 0.599664 | 2.4:-57028715 | MS.gene67819:CDS |
| GCACAGTGAAGGGGTTCCCA+AGG | 0.602015 | 2.4:-57029531 | MS.gene67819:CDS |
| AGTTGCAGGCCTTCTAGGAG+TGG | 0.603562 | 2.4:-57028989 | MS.gene67819:CDS |
| AAAGGCAAGCAAAACAACAA+TGG | 0.606116 | 2.4:+57029978 | None:intergenic |
| GGGGCCAAAATGGCCAAACT+GGG | 0.606123 | 2.4:-57029766 | MS.gene67819:CDS |
| TTGCATATGGATCAAAAGGT+GGG | 0.620461 | 2.4:+57029440 | None:intergenic |
| AAGCTCATCATCATTTGCCA+AGG | 0.621976 | 2.4:-57029494 | MS.gene67819:CDS |
| AAAGGCACTATCCATCACCT+TGG | 0.631525 | 2.4:+57029477 | None:intergenic |
| AGGAATGAATTAGGAAACGA+TGG | 0.646376 | 2.4:-57028856 | MS.gene67819:CDS |
| GATGAGCTTAGATCCATACA+TGG | 0.648355 | 2.4:+57029508 | None:intergenic |
| AGTTGATTCGGATTTAGCAG+AGG | 0.651747 | 2.4:-57029806 | MS.gene67819:CDS |
| GGTGGCTTCTACCCTAGAGG+AGG | 0.663458 | 2.4:-57028712 | MS.gene67819:CDS |
| CTATAAAGAGCACAGTGAAG+GGG | 0.666124 | 2.4:-57029540 | MS.gene67819:CDS |
| GTATCCTTATGGAGTAACTG+TGG | 0.688628 | 2.4:-57028908 | MS.gene67819:CDS |
| GGTGATGAACATGTCCCAGG+TGG | 0.767815 | 2.4:-57028730 | MS.gene67819:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACATTAAAATTATTTTAGT+AGG | + | chr2.4:57029657-57029676 | None:intergenic | 10.0% |
| !!! | TTGTATGAATCTTTATTTTA+GGG | - | chr2.4:57029121-57029140 | MS.gene67819:intron | 15.0% |
| !! | ACAATTCTCAATATTTCAAT+TGG | + | chr2.4:57029924-57029943 | None:intergenic | 20.0% |
| !! | GAAATATTGAGAATTGTATA+TGG | - | chr2.4:57029927-57029946 | MS.gene67819:CDS | 20.0% |
| !! | GTTTACAAAACTAACTTAAA+AGG | + | chr2.4:57029575-57029594 | None:intergenic | 20.0% |
| !! | TCCAAATATTCTAAATTAAG+AGG | + | chr2.4:57028813-57028832 | None:intergenic | 20.0% |
| !!! | ATGAATAAGAACATGATTTT+GGG | + | chr2.4:57028743-57028762 | None:intergenic | 20.0% |
| !!! | ATGATAAAAAAAGTACTAGA+GGG | + | chr2.4:57029004-57029023 | None:intergenic | 20.0% |
| !!! | GTTGTATGAATCTTTATTTT+AGG | - | chr2.4:57029120-57029139 | MS.gene67819:intron | 20.0% |
| !!! | GTTTTACTCGAAAATAAATA+AGG | - | chr2.4:57029524-57029543 | MS.gene67819:CDS | 20.0% |
| !!! | TACTTGTTAGTAATAAAGAA+TGG | - | chr2.4:57029430-57029449 | MS.gene67819:CDS | 20.0% |
| !!! | TCCTCTTAATTTAGAATATT+TGG | - | chr2.4:57028809-57028828 | MS.gene67819:CDS | 20.0% |
| !!! | TTCTTTTTATTTGGATCATT+AGG | - | chr2.4:57028840-57028859 | MS.gene67819:CDS | 20.0% |
| ! | AAGGATATTATCTTGCAATT+TGG | - | chr2.4:57028951-57028970 | MS.gene67819:CDS | 25.0% |
| !! | CATGAATAAGAACATGATTT+TGG | + | chr2.4:57028744-57028763 | None:intergenic | 25.0% |
| !! | GAAGCTGAATTCTTTTTATT+TGG | - | chr2.4:57028831-57028850 | MS.gene67819:CDS | 25.0% |
| !!! | ATTCACTTGCGATTTTATTT+AGG | - | chr2.4:57029491-57029510 | MS.gene67819:CDS | 25.0% |
| !!! | GATGATAAAAAAAGTACTAG+AGG | + | chr2.4:57029005-57029024 | None:intergenic | 25.0% |
| AAGTTGACATCATTTGCATA+TGG | + | chr2.4:57029260-57029279 | None:intergenic | 30.0% | |
| CAAACTGGGTACATTTATTA+AGG | - | chr2.4:57028932-57028951 | MS.gene67819:CDS | 30.0% | |
| CTTAATAAATGTACCCAGTT+TGG | + | chr2.4:57028934-57028953 | None:intergenic | 30.0% | |
| TCATCATCTGAAAATGTTTC+TGG | + | chr2.4:57028777-57028796 | None:intergenic | 30.0% | |
| TCATTTGCATATGGATCAAA+AGG | + | chr2.4:57029251-57029270 | None:intergenic | 30.0% | |
| TCTTATGTGATTCCTTATGT+CGG | - | chr2.4:57029290-57029309 | MS.gene67819:intron | 30.0% | |
| TTATTTGGATCATTAGGTCA+TGG | - | chr2.4:57028846-57028865 | MS.gene67819:CDS | 30.0% | |
| TTGACTCTCTTGATGTAATT+CGG | + | chr2.4:57028681-57028700 | None:intergenic | 30.0% | |
| TTGAGAATTGTATATGGAAG+TGG | - | chr2.4:57029933-57029952 | MS.gene67819:CDS | 30.0% | |
| AAAGGCAAGCAAAACAACAA+TGG | + | chr2.4:57028709-57028728 | None:intergenic | 35.0% | |
| AGGAATGAATTAGGAAACGA+TGG | - | chr2.4:57029828-57029847 | MS.gene67819:CDS | 35.0% | |
| ATAAAAGATGAACCCATCTC+AGG | - | chr2.4:57029852-57029871 | MS.gene67819:CDS | 35.0% | |
| ATGATCGTATAACTGCATCT+TGG | + | chr2.4:57029728-57029747 | None:intergenic | 35.0% | |
| TTGCATATGGATCAAAAGGT+GGG | + | chr2.4:57029247-57029266 | None:intergenic | 35.0% | |
| TTTGCATATGGATCAAAAGG+TGG | + | chr2.4:57029248-57029267 | None:intergenic | 35.0% | |
| ! | TGGATTGGATGTAGTTGATT+CGG | - | chr2.4:57028866-57028885 | MS.gene67819:CDS | 35.0% |
| !! | CAATTTGGTTTGCAAGAAGT+TGG | - | chr2.4:57028966-57028985 | MS.gene67819:CDS | 35.0% |
| !! | GAATTTTAACAGCTAGTTGC+AGG | - | chr2.4:57029681-57029700 | MS.gene67819:intron | 35.0% |
| !! | TCATCTGAAAATGTTTCTGG+TGG | + | chr2.4:57028774-57028793 | None:intergenic | 35.0% |
| !!! | AGAACATGATTTTGGGATCA+AGG | + | chr2.4:57028736-57028755 | None:intergenic | 35.0% |
| AAGCTCATCATCATTTGCCA+AGG | - | chr2.4:57029190-57029209 | MS.gene67819:intron | 40.0% | |
| AGCAAGGATATTTCCTGAGA+TGG | + | chr2.4:57029868-57029887 | None:intergenic | 40.0% | |
| AGTGAATAACACGCGTCAAT+CGG | + | chr2.4:57029478-57029497 | None:intergenic | 40.0% | |
| ATCATCATTTGCCAAGGTGA+TGG | - | chr2.4:57029196-57029215 | MS.gene67819:intron | 40.0% | |
| ATCTCAGGAAATATCCTTGC+TGG | - | chr2.4:57029867-57029886 | MS.gene67819:CDS | 40.0% | |
| ATTCCTTATGTCGGTCTTAC+CGG | - | chr2.4:57029299-57029318 | MS.gene67819:intron | 40.0% | |
| GATGAGCTTAGATCCATACA+TGG | + | chr2.4:57029179-57029198 | None:intergenic | 40.0% | |
| GCAAGGATATTTCCTGAGAT+GGG | + | chr2.4:57029867-57029886 | None:intergenic | 40.0% | |
| GTATCCTTATGGAGTAACTG+TGG | - | chr2.4:57029776-57029795 | MS.gene67819:CDS | 40.0% | |
| TCAGCGCTTAGGAATGAATT+AGG | - | chr2.4:57029819-57029838 | MS.gene67819:CDS | 40.0% | |
| TGCAAGAAGTTGGACATTTG+AGG | - | chr2.4:57028976-57028995 | MS.gene67819:CDS | 40.0% | |
| TGGATCATTAGGTCATGGAT+TGG | - | chr2.4:57028851-57028870 | MS.gene67819:CDS | 40.0% | |
| TTAGATCCATACATGGCCTT+GGG | + | chr2.4:57029172-57029191 | None:intergenic | 40.0% | |
| ! | ACAAAATGCTACTTCGAGGA+AGG | - | chr2.4:57029346-57029365 | MS.gene67819:CDS | 40.0% |
| ! | AGCATTTTGTAGGAGTGGAT+TGG | + | chr2.4:57029336-57029355 | None:intergenic | 40.0% |
| ! | CTATAAAGAGCACAGTGAAG+GGG | - | chr2.4:57029144-57029163 | MS.gene67819:intron | 40.0% |
| ! | GAAGTAGCATTTTGTAGGAG+TGG | + | chr2.4:57029341-57029360 | None:intergenic | 40.0% |
| ! | GCTATAAAGAGCACAGTGAA+GGG | - | chr2.4:57029143-57029162 | MS.gene67819:intron | 40.0% |
| ! | GTGAATTTTCATCACCAGCA+AGG | + | chr2.4:57029884-57029903 | None:intergenic | 40.0% |
| ! | TCCTACAAAATGCTACTTCG+AGG | - | chr2.4:57029342-57029361 | MS.gene67819:CDS | 40.0% |
| ! | TCCTCGAAGTAGCATTTTGT+AGG | + | chr2.4:57029346-57029365 | None:intergenic | 40.0% |
| !! | AGTTGATTCGGATTTAGCAG+AGG | - | chr2.4:57028878-57028897 | MS.gene67819:CDS | 40.0% |
| !! | GTTGATTCGGATTTAGCAGA+GGG | - | chr2.4:57028879-57028898 | MS.gene67819:CDS | 40.0% |
| !!! | TTTTGGGATCAAGGTGAGAA+AGG | + | chr2.4:57028727-57028746 | None:intergenic | 40.0% |
| AGTAGGTCGCGATGAAATCA+TGG | + | chr2.4:57029640-57029659 | None:intergenic | 45.0% | |
| ATAACACCATCTCCTCCTCT+AGG | + | chr2.4:57029987-57030006 | None:intergenic | 45.0% | |
| CTTAGATCCATACATGGCCT+TGG | + | chr2.4:57029173-57029192 | None:intergenic | 45.0% | |
| GTGAATAACACGCGTCAATC+GGG | + | chr2.4:57029477-57029496 | None:intergenic | 45.0% | |
| TAACACCATCTCCTCCTCTA+GGG | + | chr2.4:57029986-57030005 | None:intergenic | 45.0% | |
| TCTGCCACAGTTACTCCATA+AGG | + | chr2.4:57029783-57029802 | None:intergenic | 45.0% | |
| TGTTATACGAACGACGTGCA+TGG | - | chr2.4:57029748-57029767 | MS.gene67819:CDS | 45.0% | |
| ! | GCATGGAAGGTGTATCCTTA+TGG | - | chr2.4:57029765-57029784 | MS.gene67819:CDS | 45.0% |
| ! | GGCTATAAAGAGCACAGTGA+AGG | - | chr2.4:57029142-57029161 | MS.gene67819:intron | 45.0% |
| ! | TGGGTGTAGAGGTTTTCCAA+AGG | + | chr2.4:57029228-57029247 | None:intergenic | 45.0% |
| ! | TGTACCCAGTTTGGCCATTT+TGG | + | chr2.4:57028925-57028944 | None:intergenic | 45.0% |
| !! | AAAGGCACTATCCATCACCT+TGG | + | chr2.4:57029210-57029229 | None:intergenic | 45.0% |
| !! | AAGGTGATGGATAGTGCCTT+TGG | - | chr2.4:57029209-57029228 | MS.gene67819:intron | 45.0% |
| ATACGAACGACGTGCATGGA+AGG | - | chr2.4:57029752-57029771 | MS.gene67819:CDS | 50.0% | |
| CTAATCGCATCTCAGCGCTT+AGG | - | chr2.4:57029808-57029827 | MS.gene67819:CDS | 50.0% | |
| GATTCGGATTTAGCAGAGGG+TGG | - | chr2.4:57028882-57028901 | MS.gene67819:CDS | 50.0% | |
| GGATCAAAAGGTGGGTGTAG+AGG | + | chr2.4:57029239-57029258 | None:intergenic | 50.0% | |
| TAGCCGGTAAGACCGACATA+AGG | + | chr2.4:57029305-57029324 | None:intergenic | 50.0% | |
| TTCTACCCTAGAGGAGGAGA+TGG | - | chr2.4:57029978-57029997 | MS.gene67819:CDS | 50.0% | |
| ! | AGTGGTGATGAACATGTCCC+AGG | - | chr2.4:57029951-57029970 | MS.gene67819:CDS | 50.0% |
| !! | ATTTTGGCCCCAATAGGTGG+GGG | + | chr2.4:57028909-57028928 | None:intergenic | 50.0% |
| !! | CATTTTGGCCCCAATAGGTG+GGG | + | chr2.4:57028910-57028929 | None:intergenic | 50.0% |
| !! | CCATTTTGGCCCCAATAGGT+GGG | + | chr2.4:57028911-57028930 | None:intergenic | 50.0% |
| !! | TGGATTGGTGCCAACATAGC+CGG | + | chr2.4:57029321-57029340 | None:intergenic | 50.0% |
| !! | TTGGCCATTTTGGCCCCAAT+AGG | + | chr2.4:57028915-57028934 | None:intergenic | 50.0% |
| CAGCTAGTTGCAGGCCTTCT+AGG | - | chr2.4:57029690-57029709 | MS.gene67819:intron | 55.0% | |
| CCCACCTATTGGGGCCAAAA+TGG | - | chr2.4:57028908-57028927 | MS.gene67819:CDS | 55.0% | |
| GGCCTGATTCCACTCCTAGA+AGG | + | chr2.4:57029707-57029726 | None:intergenic | 55.0% | |
| GGGGCCAAAATGGCCAAACT+GGG | - | chr2.4:57028918-57028937 | MS.gene67819:CDS | 55.0% | |
| GGTGATGAACATGTCCCAGG+TGG | - | chr2.4:57029954-57029973 | MS.gene67819:CDS | 55.0% | |
| TGGGGCCAAAATGGCCAAAC+TGG | - | chr2.4:57028917-57028936 | MS.gene67819:CDS | 55.0% | |
| ! | AGTTGCAGGCCTTCTAGGAG+TGG | - | chr2.4:57029695-57029714 | MS.gene67819:intron | 55.0% |
| ! | GGCCTTCTAGGAGTGGAATC+AGG | - | chr2.4:57029702-57029721 | MS.gene67819:intron | 55.0% |
| ! | GTCGGTCTTACCGGCTATGT+TGG | - | chr2.4:57029308-57029327 | MS.gene67819:intron | 55.0% |
| !! | CTCTAGGGTAGAAGCCACCT+GGG | + | chr2.4:57029971-57029990 | None:intergenic | 55.0% |
| !! | GCCATTTTGGCCCCAATAGG+TGG | + | chr2.4:57028912-57028931 | None:intergenic | 55.0% |
| AGGGTGGACCCCCACCTATT+GGG | - | chr2.4:57028898-57028917 | MS.gene67819:CDS | 60.0% | |
| CCAGGTGGCTTCTACCCTAG+AGG | - | chr2.4:57029969-57029988 | MS.gene67819:CDS | 60.0% | |
| GCACAGTGAAGGGGTTCCCA+AGG | - | chr2.4:57029153-57029172 | MS.gene67819:intron | 60.0% | |
| GGGGTTCCCAAGGCCATGTA+TGG | - | chr2.4:57029163-57029182 | MS.gene67819:intron | 60.0% | |
| GGTGGCTTCTACCCTAGAGG+AGG | - | chr2.4:57029972-57029991 | MS.gene67819:CDS | 60.0% | |
| !! | CCTCTAGGGTAGAAGCCACC+TGG | + | chr2.4:57029972-57029991 | None:intergenic | 60.0% |
| GAGGGTGGACCCCCACCTAT+TGG | - | chr2.4:57028897-57028916 | MS.gene67819:CDS | 65.0% | |
| GGGTGGACCCCCACCTATTG+GGG | - | chr2.4:57028899-57028918 | MS.gene67819:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 57028672 | 57030034 | 57028672 | ID=MS.gene67819 |
| chr2.4 | mRNA | 57028672 | 57030034 | 57028672 | ID=MS.gene67819.t1;Parent=MS.gene67819 |
| chr2.4 | exon | 57029709 | 57030034 | 57029709 | ID=MS.gene67819.t1.exon1;Parent=MS.gene67819.t1 |
| chr2.4 | CDS | 57029709 | 57030034 | 57029709 | ID=cds.MS.gene67819.t1;Parent=MS.gene67819.t1 |
| chr2.4 | exon | 57029339 | 57029564 | 57029339 | ID=MS.gene67819.t1.exon2;Parent=MS.gene67819.t1 |
| chr2.4 | CDS | 57029339 | 57029564 | 57029339 | ID=cds.MS.gene67819.t1;Parent=MS.gene67819.t1 |
| chr2.4 | exon | 57028672 | 57029013 | 57028672 | ID=MS.gene67819.t1.exon3;Parent=MS.gene67819.t1 |
| chr2.4 | CDS | 57028672 | 57029013 | 57028672 | ID=cds.MS.gene67819.t1;Parent=MS.gene67819.t1 |
| Gene Sequence |
| Protein sequence |
