AlfalfaGEDB | MS.gene83843

M. sativa cultivar XinJiangDaYe / MS.gene83843

KEGG: -
GO: -
PFAM: PF03016.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83843.t1	XP_003624636.3	87.9	487	56	2	1	485	1	486	1.00E-248	869

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83843.t1	Q9FFN2	38.7	354	194	10	140	480	172	515	5.3e-60	233.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83843.t1	Q2HVN7	87.9	487	56	2	1	485	1	486	7.5e-249	869.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene83843	-0.81115	8.09E-51	-1.69E-46
MS.gene049281	MS.gene83843	0.838368	3.00E-57	-1.69E-46
MS.gene049285	MS.gene83843	-0.807136	5.86E-50	-1.69E-46
MS.gene049320	MS.gene83843	-0.826705	2.34E-54	-1.69E-46
MS.gene05010	MS.gene83843	-0.809956	1.46E-50	-1.69E-46
MS.gene050129	MS.gene83843	0.813413	2.59E-51	-1.69E-46
MS.gene050363	MS.gene83843	0.853589	2.16E-61	-1.69E-46
MS.gene050381	MS.gene83843	0.862883	3.70E-64	-1.69E-46
MS.gene050504	MS.gene83843	-0.839518	1.51E-57	-1.69E-46
MS.gene050547	MS.gene83843	0.804132	2.50E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83843.t1	MTR_7g085840	97.590	332	8	0	154	485	1	332	0.0	683
MS.gene83843.t1	MTR_5g031480	42.779	367	189	10	119	478	61	413	4.20e-94	291
MS.gene83843.t1	MTR_5g049790	42.287	376	190	11	105	478	83	433	2.73e-91	285
MS.gene83843.t1	MTR_7g103260	39.601	351	185	10	140	475	54	392	9.81e-72	233
MS.gene83843.t1	MTR_7g103270	38.095	357	192	9	140	480	55	398	1.22e-68	225
MS.gene83843.t1	MTR_1g061760	38.596	342	188	10	147	475	147	479	1.22e-65	219
MS.gene83843.t1	MTR_3g097310	36.031	383	213	11	114	480	125	491	9.46e-65	218
MS.gene83843.t1	MTR_3g106690	38.286	350	192	11	147	481	52	392	1.89e-63	211
MS.gene83843.t1	MTR_7g103150	36.134	357	190	12	140	475	141	480	4.07e-62	210
MS.gene83843.t1	MTR_4g100730	35.196	358	198	10	140	475	186	531	9.53e-62	211

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83843.t1	AT4G38040	45.349	344	173	8	138	474	84	419	1.57e-95	295
MS.gene83843.t1	AT4G38040	42.812	320	168	8	138	450	84	395	1.62e-77	248
MS.gene83843.t1	AT4G16745	36.524	397	214	13	101	472	141	524	3.03e-70	233
MS.gene83843.t1	AT5G03795	38.420	367	187	11	132	480	170	515	1.18e-66	223
MS.gene83843.t1	AT4G16745	36.504	389	209	13	101	464	141	516	6.01e-65	220
MS.gene83843.t1	AT5G37000	37.853	354	188	11	140	475	208	547	3.51e-64	218
MS.gene83843.t1	AT5G11130	34.688	369	202	10	137	483	128	479	5.76e-60	204
MS.gene83843.t1	AT5G11610	36.182	351	198	13	140	475	202	541	2.55e-58	202
MS.gene83843.t1	AT5G11130	34.943	352	190	10	154	483	1	335	3.75e-58	196
MS.gene83843.t1	AT4G32790	36.314	369	187	14	136	475	240	589	1.19e-57	201

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Find 97 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAAGGTCATAATAGT+TGG	0.482102	7.4:+21644222	None:intergenic
AAATATGGTTAAGAGAGCTA+AGG	0.581380	7.4:+21647428	None:intergenic
AAGGGAAGAAGGACGAAGCA+TGG	0.619694	7.4:+21647515	None:intergenic
AAGTCTCATACTTTCCAATT+GGG	0.455013	7.4:-21647237	MS.gene83843:CDS
AAGTGGTTATATTGCTCATA+AGG	0.385596	7.4:-21644836	MS.gene83843:CDS
AAGTTCTATACCTATTGTTT+TGG	0.284491	7.4:-21643987	MS.gene83843:CDS
AATGCATCAAAGTCAAGTGG+AGG	0.658492	7.4:+21644043	None:intergenic
ACAGAAATCTTTGTTCACAA+TGG	0.577531	7.4:-21644373	MS.gene83843:CDS
AGAAGAATGTGTTGAAGGTA+AGG	0.445791	7.4:-21644087	MS.gene83843:CDS
AGAGTGGATTGGTGGTTATG+TGG	0.497762	7.4:+21647354	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGGAAGGTCATAATAGT+TGG	+	chr7.4:21647270-21647289	None:intergenic	30.0%
AAATATGGTTAAGAGAGCTA+AGG	+	chr7.4:21644064-21644083	None:intergenic	30.0%
AAGTCTCATACTTTCCAATT+GGG	-	chr7.4:21644252-21644271	MS.gene83843:CDS	30.0%
AAGTGGTTATATTGCTCATA+AGG	-	chr7.4:21646653-21646672	MS.gene83843:intron	30.0%
AATAAAATAATGCAGGGCTT+TGG	+	chr7.4:21644984-21645003	None:intergenic	30.0%
ACAGAAATCTTTGTTCACAA+TGG	-	chr7.4:21647116-21647135	MS.gene83843:intron	30.0%
AGTCTACAACCATTTCTTAT+AGG	+	chr7.4:21645048-21645067	None:intergenic	30.0%
ATAGTAAGCATAGAAGAGAA+TGG	+	chr7.4:21644088-21644107	None:intergenic	30.0%
ATCAGAATGATTGTTGTGTA+AGG	+	chr7.4:21644223-21644242	None:intergenic	30.0%
ATGATTGTTGTGTAAGGTAT+TGG	+	chr7.4:21644217-21644236	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	21643976	21647535	21643976	ID=MS.gene83843
chr7.4	mRNA	21643976	21647535	21643976	ID=MS.gene83843.t1;Parent=MS.gene83843
chr7.4	exon	21647181	21647535	21647181	ID=MS.gene83843.t1.exon1;Parent=MS.gene83843.t1
chr7.4	CDS	21647181	21647535	21647181	ID=cds.MS.gene83843.t1;Parent=MS.gene83843.t1
chr7.4	exon	21644772	21645378	21644772	ID=MS.gene83843.t1.exon2;Parent=MS.gene83843.t1
chr7.4	CDS	21644772	21645378	21644772	ID=cds.MS.gene83843.t1;Parent=MS.gene83843.t1
chr7.4	exon	21643976	21644471	21643976	ID=MS.gene83843.t1.exon3;Parent=MS.gene83843.t1
chr7.4	CDS	21643976	21644471	21643976	ID=cds.MS.gene83843.t1;Parent=MS.gene83843.t1

Gene Sequence

>MS.gene83843

ATGCTTCGTCCTTCTTCCCTTTACCAATACTCTCATACTCATGTTGCAAGTTCATTCAAGAGCTTTTTCTTCTTCATTCCAACTACCTTAGCTCTCTTAACCATATTTTCCATTCTCTTCTATGCTTACTATACCTCAATCATCTTCACACACCATCGTCCACATAACCACCAATCCACTCTTAACTTCAAATCATCATCTCCAAAATTCATTCTTCCTTCTCCAACCCCTCACTTAACCAATACCTTACACAACAATCATTCTGATCAGTTCATCAAGTCTCATACTTTCCAATTGGGTCATGGCCTTGGACCACAAAGTCAACGGGGTTTGCCACCCCAATCCAGCTCAAAGGGTATGCAAAATGTTTCAATATTTTTTTTTAATATTGTTGTTTGTTAATATGGTTTGTGTGGTATAATTTTTTTATTTGATTTTGACTTTGTCAAAATAAATACTATATATCATATTATCATTCATTTTAAGGTGGCTTTTGTTGGAAGAAGTAGAAACTTGTTTAGTATTCAAAGTTTAAGTCTTTCACGTCTCTTGATCCATGAGATCATTTTTACAACCATGGCATGCTGTTGTTGAACCTTGGAAATTGTTTAACTAATGCATGATATTGTGTAATGTATTCTATGTAGATGTAGATGTAGATAACTCGTAATCTTTCTCAATAAGACAAACATAATTATGTGGACCTTTCTCTATTTTTGGAAATGTTGTGGACATTATTTGCTTGCTGTAAATGCATATTGTTATATACGACAATGAACACGTTACATAACACATGTAATTTGTAGTTTACTTTTAAATATGTGTAATTGAGATGAAGCTGGCATTAGGGCATGAAATTCGAACCTTCCATCAAAATAGAAAGTTTCAAAAGATTGTGTATCAGTAACTGACGCAATCTATCTATAAGGACTGATTAATTAAGAATGTACTGCCATTTTAGTTTGCAATATTGTATATTTTCTTTTTTCTGGTAGAAAAAGAGGGCCAAAGCCCTGCATTATTTTATTCTAATATTCCTAGATTGGTAAATGGCTCACGCTTTTGGCACCCTATAAGAAATGGTTGTAGACTAAAATAAAACATGGTAGAAATTAGGGATGTCAATTTTATACAAACTCATAATGTGTACGAGTATATTATAAATAAATTATAGTAATTTTAAATATGTATTAATTTATTTATTTAATTAAAAAATTATTGAGTAATTAAAAAAATTATAACTTTAAATTTCAGATAATTTTTTTTGTCTTAAATGCAATTTTTTTTGACAAAAGCTTAAAAGCAATTTTGATCCCTCTATTTTTAAAATTGTTAACTTTTGGTACCCCTATTTCTAAAACCGATTTTTTGATCCCCTATTTAAAAAGTCAAAAAAATATTTTGGGAATAAAAAGATGGTGTTAAAATAATGCAATCAAATCCCAAGTATCATAAACGAAAAACATGATAAACAGAGCCACTCAAATAAATCCAATTCTTTTTTAAATTTCAATAATAATTTGTTATTTAATTTTTTGATAGTTGTAATATAGAATTTATAATTAAAATGACATGGAAATGAGATGTTAAATGATATGCCATGTAGGCAATGTCACATAAGCTTCATGTCATTAATGAACATGGCACATTATTTAGAGAGGAGAAAGACCAAAATATTTTGTTGACTTTTTAAACAGAGGGATCAAAAAACCGGTTTTAGAAATAGGGGTATCAAAAATTAACAATTTTGAAAATAGGGGGATCAAAATTGCATTCAAGTTTTTATTTTTTTTTTATTTTTTTTTTTTATGTATGTGTGTTTAATCATTGTATATAGAATCATATACACTTTTTGTTGTAAATATGATTCTAAATTTTGTTTTTTGAAGGAATGATTCTATATTTTGTTGTTTTTTCTTTTTTGATCAATTCATTCTATATTTTGTTGTTATAAGTAGAGATTATAATCGGTCCATTAATCAGCTGTGTTAGGTTAACAATTTAGTGCTTTTACTCTCATACGTTTGAAATTATATATTAAGAACCAATTTTTCAAAATTCTATACCTTTTTAATGCAAATTTATCGAATATATTAGTATTCACTATTTGTATGAACTATAGAGTTCATATGTGAGCACATGTTTTTGTCATTGCAGGACAAAACACACACGAAAACTCTGTTTTTGACGGTTCAGGAAAATTTAAGGAAAACAACAATGTGTTCCATGATAGAGATATGTTTCTAGAAGACTATAAAGAAATGAATAGAAGCTTTAAGATATATGTTTATCCTCACAGAAAAGATGATCCTTTTGCAAATGTGCTATTACCCGTGAAAACTGAACCCGGTGGCAATTATGCCAGTGAAAGTTACTTCAAGAAAGCGCTTATGAAGAGCCATTTCATTACAAAAGATCCAACAAAAGCAGATCTTTTCTTCATGCCTTTTTCCATAGCAAGTCTACGGCATGATCGTCGAGTTGGTGTGGGAGGTATCCAAGATTTCATTAGAGACTATGTTCAGAATATGATTCACAAGTATCCGTATTGGAACCGCACCGGTGGCGCGGATCACTTTTATGTGGCATGTCATTCAATTGGAAGGTCTGCTATGGATAAAGCACCTGATGTGAAATTCAATGCCATTCAAGTTGTTTGTTCATCAAGTTATTTCTTAAGTGGTTATATTGCTCATAAGGATGCATGCCTACCACAAATTTGGCCAAGAAAAGAAAATCCACCCAACCTTGTTTCATCAAATAGGTACCATTTCTTCCTCTTTCTAGGTACATTTATTATTGACGTAAACCTAATCCACCTGATTGATTCGACATCAACATGTTTTATATCATCGGAATGAAAAACTTGACCATCACCACTTTTGGGTCTAAAAATATGAACTAGACAACCAAAACTAGATTTTAAATTAATAGAGGACCAACTCCGTTAGTGATTAAAAATAGGAGGATCAAAACTGCGCAGTTAAGTCTAAAAAATTTCTAAAGAAACATTTCAACTATGATTTTATTACATGATATTTTTTTGCTTTTGTAAAAATGACAGGAAAAAGCTAGCTTTCTTTGCCGGAGAAGTGAATTCGCCAGTACGGATAAATCTTGTCGAGACATGGAAAAATGATACAGAAATCTTTGTTCACAATGGAAGACTAAAAACACCATACGGTGATGAGTTATTAGGAAGCAAGTTCTGTTTTCATGTTAGAGGCTATGAAGTGAACACAGCACGTATTGGTGATTCATTATACTATGGTTGTGTTCCAGTGATCATTGCCAACTATTATGACCTTCCTTTTGCAGATATTTTGAATTGGAAAAGTTTTTCTGTTGTTGTCACTACTTTAGATATACCTTTATTGAAAAAGATTCTGAAAGGTATAGTTAGTTCTGGTGAGTATTTGATGCTACAGAAGAATGTGTTGAAGGTAAGGGAGCATTTTCAATGGCATTCACCTCCACTTGACTTTGATGCATTCTATATGGTTATGTATGAATTATGGCTTAGACGAAGTTCTATACCTATTGTTTTGGGGGATTCATAG

Protein sequence

>MS.gene83843.t1

MLRPSSLYQYSHTHVASSFKSFFFFIPTTLALLTIFSILFYAYYTSIIFTHHRPHNHQSTLNFKSSSPKFILPSPTPHLTNTLHNNHSDQFIKSHTFQLGHGLGPQSQRGLPPQSSSKGQNTHENSVFDGSGKFKENNNVFHDRDMFLEDYKEMNRSFKIYVYPHRKDDPFANVLLPVKTEPGGNYASESYFKKALMKSHFITKDPTKADLFFMPFSIASLRHDRRVGVGGIQDFIRDYVQNMIHKYPYWNRTGGADHFYVACHSIGRSAMDKAPDVKFNAIQVVCSSSYFLSGYIAHKDACLPQIWPRKENPPNLVSSNRKKLAFFAGEVNSPVRINLVETWKNDTEIFVHNGRLKTPYGDELLGSKFCFHVRGYEVNTARIGDSLYYGCVPVIIANYYDLPFADILNWKSFSVVVTTLDIPLLKKILKGIVSSGEYLMLQKNVLKVREHFQWHSPPLDFDAFYMVMYELWLRRSSIPIVLGDS