Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84840.t1 | XP_004510773.1 | 100 | 126 | 0 | 0 | 1 | 126 | 1043 | 1168 | 1.30E-65 | 258.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84840.t1 | Q6EVK6 | 88.2 | 127 | 14 | 1 | 1 | 126 | 1016 | 1142 | 1.5e-59 | 229.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84840.t1 | A0A1S2YVY0 | 100.0 | 126 | 0 | 0 | 1 | 126 | 1043 | 1168 | 9.2e-66 | 258.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene84840.t1 | TR | SNF2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene84840 | 0.853895 | 1.77E-61 | -1.69E-46 |
| MS.gene049159 | MS.gene84840 | 0.809681 | 1.68E-50 | -1.69E-46 |
| MS.gene049585 | MS.gene84840 | 0.821283 | 4.38E-53 | -1.69E-46 |
| MS.gene049744 | MS.gene84840 | 0.818348 | 2.05E-52 | -1.69E-46 |
| MS.gene049983 | MS.gene84840 | 0.813529 | 2.44E-51 | -1.69E-46 |
| MS.gene050084 | MS.gene84840 | 0.80915 | 2.18E-50 | -1.69E-46 |
| MS.gene050085 | MS.gene84840 | 0.816691 | 4.85E-52 | -1.69E-46 |
| MS.gene050213 | MS.gene84840 | 0.808741 | 2.67E-50 | -1.69E-46 |
| MS.gene050257 | MS.gene84840 | 0.802279 | 6.05E-49 | -1.69E-46 |
| MS.gene050348 | MS.gene84840 | 0.848491 | 5.92E-60 | -1.69E-46 |
| MS.gene050359 | MS.gene84840 | 0.805231 | 1.48E-49 | -1.69E-46 |
| MS.gene050361 | MS.gene84840 | 0.842945 | 1.90E-58 | -1.69E-46 |
| MS.gene050551 | MS.gene84840 | 0.861205 | 1.21E-63 | -1.69E-46 |
| MS.gene050556 | MS.gene84840 | 0.805494 | 1.30E-49 | -1.69E-46 |
| MS.gene050646 | MS.gene84840 | 0.839454 | 1.57E-57 | -1.69E-46 |
| MS.gene050654 | MS.gene84840 | 0.832293 | 1.03E-55 | -1.69E-46 |
| MS.gene050807 | MS.gene84840 | 0.802711 | 4.93E-49 | -1.69E-46 |
| MS.gene051066 | MS.gene84840 | 0.823971 | 1.04E-53 | -1.69E-46 |
| MS.gene051102 | MS.gene84840 | 0.836251 | 1.04E-56 | -1.69E-46 |
| MS.gene051198 | MS.gene84840 | 0.844954 | 5.49E-59 | -1.69E-46 |
| MS.gene051209 | MS.gene84840 | 0.836181 | 1.09E-56 | -1.69E-46 |
| MS.gene051210 | MS.gene84840 | 0.802102 | 6.58E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene84840 | 0.806792 | 6.93E-50 | -1.69E-46 |
| MS.gene051381 | MS.gene84840 | 0.831111 | 2.01E-55 | -1.69E-46 |
| MS.gene051744 | MS.gene84840 | 0.820402 | 6.99E-53 | -1.69E-46 |
| MS.gene051800 | MS.gene84840 | 0.873126 | 1.87E-67 | -1.69E-46 |
| MS.gene052037 | MS.gene84840 | 0.800593 | 1.34E-48 | -1.69E-46 |
| MS.gene052168 | MS.gene84840 | 0.800696 | 1.28E-48 | -1.69E-46 |
| MS.gene052239 | MS.gene84840 | -0.815247 | 1.02E-51 | -1.69E-46 |
| MS.gene052242 | MS.gene84840 | -0.813495 | 2.49E-51 | -1.69E-46 |
| MS.gene052307 | MS.gene84840 | 0.852164 | 5.52E-61 | -1.69E-46 |
| MS.gene052397 | MS.gene84840 | 0.800182 | 1.62E-48 | -1.69E-46 |
| MS.gene052463 | MS.gene84840 | 0.80938 | 1.95E-50 | -1.69E-46 |
| MS.gene052514 | MS.gene84840 | 0.830642 | 2.62E-55 | -1.69E-46 |
| MS.gene052516 | MS.gene84840 | 0.828944 | 6.78E-55 | -1.69E-46 |
| MS.gene052609 | MS.gene84840 | 0.899014 | 3.01E-77 | -1.69E-46 |
| MS.gene052674 | MS.gene84840 | 0.801014 | 1.10E-48 | -1.69E-46 |
| MS.gene052675 | MS.gene84840 | 0.8035 | 3.38E-49 | -1.69E-46 |
| MS.gene052677 | MS.gene84840 | 0.812963 | 3.25E-51 | -1.69E-46 |
| MS.gene052775 | MS.gene84840 | 0.83673 | 7.88E-57 | -1.69E-46 |
| MS.gene052776 | MS.gene84840 | 0.87522 | 3.66E-68 | -1.69E-46 |
| MS.gene052932 | MS.gene84840 | 0.800296 | 1.54E-48 | -1.69E-46 |
| MS.gene052994 | MS.gene84840 | 0.826869 | 2.14E-54 | -1.69E-46 |
| MS.gene053079 | MS.gene84840 | 0.851171 | 1.06E-60 | -1.69E-46 |
| MS.gene053143 | MS.gene84840 | 0.827577 | 1.45E-54 | -1.69E-46 |
| MS.gene053151 | MS.gene84840 | 0.805368 | 1.38E-49 | -1.69E-46 |
| MS.gene05315 | MS.gene84840 | 0.808372 | 3.20E-50 | -1.69E-46 |
| MS.gene053486 | MS.gene84840 | 0.839882 | 1.21E-57 | -1.69E-46 |
| MS.gene053620 | MS.gene84840 | 0.823297 | 1.49E-53 | -1.69E-46 |
| MS.gene054479 | MS.gene84840 | 0.800731 | 1.26E-48 | -1.69E-46 |
| MS.gene054576 | MS.gene84840 | 0.825719 | 4.02E-54 | -1.69E-46 |
| MS.gene054824 | MS.gene84840 | 0.847296 | 1.27E-59 | -1.69E-46 |
| MS.gene055310 | MS.gene84840 | 0.807299 | 5.41E-50 | -1.69E-46 |
| MS.gene055311 | MS.gene84840 | 0.804981 | 1.66E-49 | -1.69E-46 |
| MS.gene055313 | MS.gene84840 | 0.818897 | 1.54E-52 | -1.69E-46 |
| MS.gene055467 | MS.gene84840 | 0.81924 | 1.29E-52 | -1.69E-46 |
| MS.gene055469 | MS.gene84840 | 0.849122 | 3.96E-60 | -1.69E-46 |
| MS.gene055513 | MS.gene84840 | 0.828295 | 9.73E-55 | -1.69E-46 |
| MS.gene055864 | MS.gene84840 | 0.808861 | 2.52E-50 | -1.69E-46 |
| MS.gene055926 | MS.gene84840 | 0.832463 | 9.32E-56 | -1.69E-46 |
| MS.gene056045 | MS.gene84840 | 0.845345 | 4.30E-59 | -1.69E-46 |
| MS.gene056174 | MS.gene84840 | 0.80025 | 1.57E-48 | -1.69E-46 |
| MS.gene056181 | MS.gene84840 | 0.826346 | 2.85E-54 | -1.69E-46 |
| MS.gene056308 | MS.gene84840 | 0.843692 | 1.20E-58 | -1.69E-46 |
| MS.gene056507 | MS.gene84840 | 0.897612 | 1.19E-76 | -1.69E-46 |
| MS.gene056519 | MS.gene84840 | 0.848818 | 4.81E-60 | -1.69E-46 |
| MS.gene056622 | MS.gene84840 | 0.848469 | 6.01E-60 | -1.69E-46 |
| MS.gene05686 | MS.gene84840 | 0.818195 | 2.22E-52 | -1.69E-46 |
| MS.gene056973 | MS.gene84840 | 0.83434 | 3.17E-56 | -1.69E-46 |
| MS.gene057034 | MS.gene84840 | 0.815962 | 7.06E-52 | -1.69E-46 |
| MS.gene057446 | MS.gene84840 | 0.83571 | 1.43E-56 | -1.69E-46 |
| MS.gene057600 | MS.gene84840 | 0.803048 | 4.20E-49 | -1.69E-46 |
| MS.gene057601 | MS.gene84840 | 0.800263 | 1.56E-48 | -1.69E-46 |
| MS.gene057869 | MS.gene84840 | 0.844195 | 8.79E-59 | -1.69E-46 |
| MS.gene057915 | MS.gene84840 | 0.830494 | 2.85E-55 | -1.69E-46 |
| MS.gene057919 | MS.gene84840 | 0.803218 | 3.87E-49 | -1.69E-46 |
| MS.gene058010 | MS.gene84840 | 0.842458 | 2.55E-58 | -1.69E-46 |
| MS.gene058081 | MS.gene84840 | 0.827768 | 1.30E-54 | -1.69E-46 |
| MS.gene058289 | MS.gene84840 | 0.860737 | 1.68E-63 | -1.69E-46 |
| MS.gene058292 | MS.gene84840 | 0.830198 | 3.36E-55 | -1.69E-46 |
| MS.gene058330 | MS.gene84840 | 0.806944 | 6.43E-50 | -1.69E-46 |
| MS.gene058638 | MS.gene84840 | 0.83301 | 6.82E-56 | -1.69E-46 |
| MS.gene058639 | MS.gene84840 | 0.830026 | 3.70E-55 | -1.69E-46 |
| MS.gene058647 | MS.gene84840 | 0.849724 | 2.69E-60 | -1.69E-46 |
| MS.gene058649 | MS.gene84840 | 0.819141 | 1.36E-52 | -1.69E-46 |
| MS.gene058919 | MS.gene84840 | 0.872556 | 2.90E-67 | -1.69E-46 |
| MS.gene059007 | MS.gene84840 | 0.824137 | 9.50E-54 | -1.69E-46 |
| MS.gene059170 | MS.gene84840 | 0.809199 | 2.13E-50 | -1.69E-46 |
| MS.gene059331 | MS.gene84840 | 0.80872 | 2.70E-50 | -1.69E-46 |
| MS.gene059335 | MS.gene84840 | 0.803977 | 2.69E-49 | -1.69E-46 |
| MS.gene059439 | MS.gene84840 | 0.864285 | 1.36E-64 | -1.69E-46 |
| MS.gene059713 | MS.gene84840 | 0.809359 | 1.97E-50 | -1.69E-46 |
| MS.gene059725 | MS.gene84840 | 0.849152 | 3.89E-60 | -1.69E-46 |
| MS.gene05973 | MS.gene84840 | 0.806148 | 9.47E-50 | -1.69E-46 |
| MS.gene059965 | MS.gene84840 | 0.818721 | 1.69E-52 | -1.69E-46 |
| MS.gene060167 | MS.gene84840 | 0.817612 | 3.01E-52 | -1.69E-46 |
| MS.gene060296 | MS.gene84840 | 0.803398 | 3.55E-49 | -1.69E-46 |
| MS.gene060373 | MS.gene84840 | 0.817396 | 3.37E-52 | -1.69E-46 |
| MS.gene060380 | MS.gene84840 | 0.859276 | 4.63E-63 | -1.69E-46 |
| MS.gene060400 | MS.gene84840 | 0.825341 | 4.94E-54 | -1.69E-46 |
| MS.gene06052 | MS.gene84840 | 0.831256 | 1.85E-55 | -1.69E-46 |
| MS.gene060637 | MS.gene84840 | 0.816082 | 6.64E-52 | -1.69E-46 |
| MS.gene060785 | MS.gene84840 | 0.809513 | 1.82E-50 | -1.69E-46 |
| MS.gene060932 | MS.gene84840 | 0.802315 | 5.95E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene84840 | 0.845454 | 4.02E-59 | -1.69E-46 |
| MS.gene060998 | MS.gene84840 | 0.812935 | 3.30E-51 | -1.69E-46 |
| MS.gene061006 | MS.gene84840 | 0.854165 | 1.48E-61 | -1.69E-46 |
| MS.gene061100 | MS.gene84840 | 0.811726 | 6.06E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84840.t1 | MTR_8g030550 | 99.206 | 126 | 1 | 0 | 1 | 126 | 1022 | 1147 | 1.49e-86 | 275 |
| MS.gene84840.t1 | MTR_8g030550 | 99.206 | 126 | 1 | 0 | 1 | 126 | 1022 | 1147 | 1.50e-86 | 275 |
| MS.gene84840.t1 | MTR_8g030550 | 99.206 | 126 | 1 | 0 | 1 | 126 | 1022 | 1147 | 1.51e-86 | 275 |
| MS.gene84840.t1 | MTR_7g078090 | 87.402 | 127 | 15 | 1 | 1 | 126 | 1029 | 1155 | 2.42e-76 | 245 |
| MS.gene84840.t1 | MTR_4g118720 | 50.388 | 129 | 61 | 2 | 1 | 126 | 1040 | 1168 | 1.88e-37 | 134 |
| MS.gene84840.t1 | MTR_5g005840 | 48.438 | 128 | 64 | 2 | 1 | 126 | 398 | 525 | 1.56e-36 | 132 |
| MS.gene84840.t1 | MTR_1g105050 | 49.219 | 128 | 63 | 2 | 1 | 126 | 411 | 538 | 7.54e-36 | 129 |
| MS.gene84840.t1 | MTR_4g118845 | 34.646 | 127 | 82 | 1 | 1 | 126 | 223 | 349 | 2.34e-28 | 108 |
| MS.gene84840.t1 | MTR_4g118845 | 34.646 | 127 | 82 | 1 | 1 | 126 | 36 | 162 | 2.57e-28 | 108 |
| MS.gene84840.t1 | MTR_2g020000 | 36.220 | 127 | 80 | 1 | 1 | 126 | 226 | 352 | 3.91e-27 | 105 |
| MS.gene84840.t1 | MTR_3g053910 | 36.090 | 133 | 77 | 2 | 2 | 126 | 607 | 739 | 2.53e-26 | 102 |
| MS.gene84840.t1 | MTR_3g053910 | 36.090 | 133 | 77 | 2 | 2 | 126 | 636 | 768 | 2.96e-26 | 102 |
| MS.gene84840.t1 | MTR_5g090090 | 36.567 | 134 | 75 | 2 | 2 | 126 | 653 | 785 | 2.90e-25 | 99.8 |
| MS.gene84840.t1 | MTR_5g090090 | 36.567 | 134 | 75 | 2 | 2 | 126 | 653 | 785 | 3.00e-25 | 99.8 |
| MS.gene84840.t1 | MTR_7g090960 | 36.090 | 133 | 78 | 1 | 1 | 126 | 532 | 664 | 5.70e-25 | 99.0 |
| MS.gene84840.t1 | MTR_7g090960 | 36.090 | 133 | 78 | 1 | 1 | 126 | 613 | 745 | 5.89e-25 | 99.0 |
| MS.gene84840.t1 | MTR_1g053955 | 39.370 | 127 | 76 | 1 | 1 | 126 | 556 | 682 | 7.17e-25 | 98.6 |
| MS.gene84840.t1 | MTR_7g039320 | 39.855 | 138 | 71 | 2 | 1 | 126 | 74 | 211 | 1.16e-24 | 97.8 |
| MS.gene84840.t1 | MTR_7g039320 | 39.855 | 138 | 71 | 2 | 1 | 126 | 74 | 211 | 1.30e-24 | 97.8 |
| MS.gene84840.t1 | MTR_7g045505 | 40.288 | 139 | 69 | 3 | 1 | 126 | 25 | 162 | 1.49e-24 | 97.8 |
| MS.gene84840.t1 | MTR_7g045505 | 40.288 | 139 | 69 | 3 | 1 | 126 | 25 | 162 | 1.64e-24 | 97.4 |
| MS.gene84840.t1 | MTR_1g013190 | 30.872 | 149 | 77 | 2 | 2 | 126 | 322 | 468 | 1.96e-23 | 94.4 |
| MS.gene84840.t1 | MTR_3g106210 | 31.973 | 147 | 78 | 1 | 2 | 126 | 324 | 470 | 4.61e-22 | 90.5 |
| MS.gene84840.t1 | MTR_3g106210 | 31.973 | 147 | 78 | 1 | 2 | 126 | 324 | 470 | 4.64e-22 | 90.5 |
| MS.gene84840.t1 | MTR_3g106210 | 31.973 | 147 | 78 | 1 | 2 | 126 | 324 | 470 | 4.64e-22 | 90.5 |
| MS.gene84840.t1 | MTR_3g106210 | 31.973 | 147 | 78 | 1 | 2 | 126 | 324 | 470 | 4.75e-22 | 90.5 |
| MS.gene84840.t1 | MTR_4g096930 | 36.232 | 138 | 73 | 3 | 3 | 126 | 771 | 907 | 3.19e-20 | 85.5 |
| MS.gene84840.t1 | MTR_5g020000 | 35.772 | 123 | 74 | 2 | 9 | 126 | 226 | 348 | 5.04e-20 | 84.7 |
| MS.gene84840.t1 | MTR_1g035330 | 33.333 | 138 | 74 | 4 | 5 | 126 | 235 | 370 | 2.15e-16 | 74.3 |
| MS.gene84840.t1 | MTR_4g078495 | 33.333 | 111 | 70 | 2 | 17 | 126 | 192 | 299 | 2.30e-14 | 68.6 |
| MS.gene84840.t1 | MTR_4g078460 | 33.333 | 111 | 70 | 2 | 17 | 126 | 478 | 585 | 2.37e-14 | 68.6 |
| MS.gene84840.t1 | MTR_4g078460 | 33.333 | 111 | 70 | 2 | 17 | 126 | 478 | 585 | 2.59e-14 | 68.6 |
| MS.gene84840.t1 | MTR_4g035100 | 31.250 | 112 | 73 | 2 | 17 | 126 | 1507 | 1616 | 8.04e-13 | 64.3 |
| MS.gene84840.t1 | MTR_4g035100 | 31.250 | 112 | 73 | 2 | 17 | 126 | 1507 | 1616 | 8.12e-13 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84840.t1 | AT2G46020 | 88.095 | 126 | 15 | 0 | 1 | 126 | 1016 | 1141 | 1.79e-76 | 246 |
| MS.gene84840.t1 | AT2G46020 | 88.095 | 126 | 15 | 0 | 1 | 126 | 1016 | 1141 | 1.79e-76 | 246 |
| MS.gene84840.t1 | AT2G46020 | 88.095 | 126 | 15 | 0 | 1 | 126 | 1016 | 1141 | 1.79e-76 | 246 |
| MS.gene84840.t1 | AT2G46020 | 88.189 | 127 | 14 | 1 | 1 | 126 | 1016 | 1142 | 2.28e-76 | 246 |
| MS.gene84840.t1 | AT2G46020 | 88.189 | 127 | 14 | 1 | 1 | 126 | 1016 | 1142 | 2.28e-76 | 246 |
| MS.gene84840.t1 | AT2G46020 | 88.189 | 127 | 14 | 1 | 1 | 126 | 1016 | 1142 | 2.28e-76 | 246 |
| MS.gene84840.t1 | AT5G19310 | 49.606 | 127 | 63 | 1 | 1 | 126 | 157 | 283 | 2.89e-39 | 139 |
| MS.gene84840.t1 | AT5G19310 | 49.606 | 127 | 63 | 1 | 1 | 126 | 421 | 547 | 3.82e-39 | 139 |
| MS.gene84840.t1 | AT2G28290 | 52.713 | 129 | 58 | 2 | 1 | 126 | 789 | 917 | 2.55e-38 | 137 |
| MS.gene84840.t1 | AT2G28290 | 52.713 | 129 | 58 | 2 | 1 | 126 | 789 | 917 | 2.55e-38 | 137 |
| MS.gene84840.t1 | AT2G28290 | 52.713 | 129 | 58 | 2 | 1 | 126 | 789 | 917 | 2.55e-38 | 137 |
| MS.gene84840.t1 | AT2G28290 | 52.713 | 129 | 58 | 2 | 1 | 126 | 790 | 918 | 2.55e-38 | 137 |
| MS.gene84840.t1 | AT2G28290 | 52.713 | 129 | 58 | 2 | 1 | 126 | 789 | 917 | 2.55e-38 | 137 |
| MS.gene84840.t1 | AT2G28290 | 52.713 | 129 | 58 | 2 | 1 | 126 | 790 | 918 | 2.55e-38 | 137 |
| MS.gene84840.t1 | AT3G06010 | 46.094 | 128 | 67 | 2 | 1 | 126 | 438 | 565 | 9.15e-34 | 124 |
| MS.gene84840.t1 | AT5G18620 | 33.858 | 127 | 83 | 1 | 1 | 126 | 229 | 355 | 1.52e-26 | 103 |
| MS.gene84840.t1 | AT5G18620 | 33.858 | 127 | 83 | 1 | 1 | 126 | 229 | 355 | 1.52e-26 | 103 |
| MS.gene84840.t1 | AT3G06400 | 33.858 | 127 | 83 | 1 | 1 | 126 | 224 | 350 | 3.23e-26 | 102 |
| MS.gene84840.t1 | AT3G06400 | 33.858 | 127 | 83 | 1 | 1 | 126 | 224 | 350 | 3.26e-26 | 102 |
| MS.gene84840.t1 | AT3G06400 | 33.858 | 127 | 83 | 1 | 1 | 126 | 224 | 350 | 3.26e-26 | 102 |
| MS.gene84840.t1 | AT3G12810 | 40.625 | 128 | 73 | 2 | 1 | 126 | 571 | 697 | 7.73e-25 | 98.6 |
| MS.gene84840.t1 | AT3G12810 | 40.625 | 128 | 73 | 2 | 1 | 126 | 567 | 693 | 8.11e-25 | 98.6 |
| MS.gene84840.t1 | AT3G57300 | 34.586 | 133 | 80 | 1 | 1 | 126 | 621 | 753 | 1.86e-24 | 97.4 |
| MS.gene84840.t1 | AT3G57300 | 34.586 | 133 | 80 | 1 | 1 | 126 | 621 | 753 | 2.09e-24 | 97.4 |
| MS.gene84840.t1 | AT3G57300 | 34.586 | 133 | 80 | 1 | 1 | 126 | 621 | 753 | 2.09e-24 | 97.4 |
| MS.gene84840.t1 | AT2G13370 | 35.338 | 133 | 78 | 2 | 2 | 126 | 661 | 793 | 3.92e-24 | 96.7 |
| MS.gene84840.t1 | AT2G13370 | 35.338 | 133 | 78 | 2 | 2 | 126 | 661 | 793 | 3.92e-24 | 96.7 |
| MS.gene84840.t1 | AT2G13370 | 35.338 | 133 | 78 | 2 | 2 | 126 | 661 | 793 | 3.92e-24 | 96.7 |
| MS.gene84840.t1 | AT5G66750 | 37.594 | 133 | 76 | 3 | 1 | 126 | 234 | 366 | 7.05e-24 | 95.9 |
| MS.gene84840.t1 | AT2G44980 | 38.168 | 131 | 76 | 2 | 1 | 126 | 87 | 217 | 1.67e-23 | 94.7 |
| MS.gene84840.t1 | AT2G44980 | 37.226 | 137 | 75 | 3 | 1 | 126 | 87 | 223 | 2.09e-22 | 91.7 |
| MS.gene84840.t1 | AT2G44980 | 37.226 | 137 | 75 | 3 | 1 | 126 | 86 | 222 | 2.30e-22 | 91.7 |
| MS.gene84840.t1 | AT2G25170 | 34.228 | 149 | 72 | 3 | 2 | 126 | 326 | 472 | 4.41e-22 | 90.9 |
| MS.gene84840.t1 | AT2G25170 | 34.228 | 149 | 72 | 3 | 2 | 126 | 335 | 481 | 4.50e-22 | 90.5 |
| MS.gene84840.t1 | AT2G25170 | 34.228 | 149 | 72 | 3 | 2 | 126 | 309 | 455 | 4.91e-22 | 90.5 |
| MS.gene84840.t1 | AT2G25170 | 34.228 | 149 | 72 | 3 | 2 | 126 | 309 | 455 | 4.91e-22 | 90.5 |
| MS.gene84840.t1 | AT5G44800 | 38.211 | 123 | 63 | 2 | 17 | 126 | 740 | 862 | 7.03e-22 | 90.1 |
| MS.gene84840.t1 | AT4G31900 | 36.434 | 129 | 75 | 2 | 5 | 126 | 220 | 348 | 1.03e-21 | 89.7 |
| MS.gene84840.t1 | AT4G31900 | 36.434 | 129 | 75 | 2 | 5 | 126 | 261 | 389 | 1.10e-21 | 89.7 |
| MS.gene84840.t1 | AT4G31900 | 36.434 | 129 | 75 | 2 | 5 | 126 | 261 | 389 | 1.25e-21 | 89.4 |
| MS.gene84840.t1 | AT3G57300 | 27.711 | 166 | 80 | 1 | 1 | 126 | 621 | 786 | 5.09e-20 | 84.7 |
| MS.gene84840.t1 | AT2G02090 | 31.884 | 138 | 76 | 4 | 5 | 126 | 253 | 388 | 1.31e-15 | 72.0 |
| MS.gene84840.t1 | AT1G03750 | 31.034 | 116 | 78 | 1 | 11 | 126 | 194 | 307 | 4.21e-14 | 67.8 |
| MS.gene84840.t1 | AT3G54280 | 29.464 | 112 | 75 | 2 | 17 | 126 | 1539 | 1648 | 3.39e-13 | 65.5 |
| MS.gene84840.t1 | AT3G54280 | 29.464 | 112 | 75 | 2 | 17 | 126 | 1508 | 1617 | 3.59e-13 | 65.1 |
Find 16 sgRNAs with CRISPR-Local
Find 33 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTTAACCATGACAGCATT+TGG | 0.335190 | 8.1:-72473674 | None:intergenic |
| TTTGACAGGAACGCCGTTGC+AGG | 0.361434 | 8.1:+72474290 | MS.gene84840:CDS |
| TGCTCTGAAATTTAATGTCT+TGG | 0.364924 | 8.1:+72474116 | MS.gene84840:CDS |
| CAAATGCTGTCATGGTTAAC+TGG | 0.373905 | 8.1:+72473675 | MS.gene84840:CDS |
| GGCATTGATTGCATACTTGA+TGG | 0.376025 | 8.1:+72473613 | MS.gene84840:CDS |
| ATGGAATTCAAAGGAAACTA+TGG | 0.408379 | 8.1:+72473632 | MS.gene84840:CDS |
| AGTTAACCATGACAGCATTT+GGG | 0.429148 | 8.1:-72473673 | None:intergenic |
| TACAGAGTGAGTTATATAAG+TGG | 0.529773 | 8.1:+72473778 | MS.gene84840:intron |
| TGATGAAGCACAAAGAATGA+AGG | 0.548822 | 8.1:+72474209 | MS.gene84840:CDS |
| TTTGGGACTATTATGAGATG+TGG | 0.559813 | 8.1:-72473656 | None:intergenic |
| AAAAGAAAGCAGACCTGCAA+CGG | 0.560812 | 8.1:-72474303 | None:intergenic |
| AATAGTCCCAAATGCTGTCA+TGG | 0.561516 | 8.1:+72473667 | MS.gene84840:CDS |
| ATGAGTTCATCATGTATGAC+CGG | 0.569436 | 8.1:+72474148 | MS.gene84840:CDS |
| GCATACTTGATGGAATTCAA+AGG | 0.579933 | 8.1:+72473623 | MS.gene84840:CDS |
| TAAAAGATGCACGACACAGA+TGG | 0.614890 | 8.1:-72473804 | None:intergenic |
| TGCTGTCATGGTTAACTGGA+AGG | 0.620544 | 8.1:+72473679 | MS.gene84840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAATAAATCAAATCAAAT+AGG | + | chr8.1:72473973-72473992 | MS.gene84840:intron | 15.0% |
| !! | ATGTTAATGTAGAAAGTAAT+TGG | + | chr8.1:72473896-72473915 | MS.gene84840:intron | 20.0% |
| !! | CAAAATTATACTTTAGTTGT+AGG | - | chr8.1:72474052-72474071 | None:intergenic | 20.0% |
| !!! | ATAAGAAAGCATAAAATCAA+AGG | + | chr8.1:72474001-72474020 | MS.gene84840:intron | 20.0% |
| ! | CAAAGCTTTCAAAAATTGAT+TGG | + | chr8.1:72474172-72474191 | MS.gene84840:CDS | 25.0% |
| ! | CCTAATATTTATATGAACAG+AGG | - | chr8.1:72473943-72473962 | None:intergenic | 25.0% |
| ! | CCTCTGTTCATATAAATATT+AGG | + | chr8.1:72473940-72473959 | MS.gene84840:intron | 25.0% |
| ! | TAAATGCACAAAAGAAGTTT+AGG | - | chr8.1:72474085-72474104 | None:intergenic | 25.0% |
| !! | TTCTTTTGTGCATTTACAAT+AGG | + | chr8.1:72474089-72474108 | MS.gene84840:intron | 25.0% |
| ATGGAATTCAAAGGAAACTA+TGG | + | chr8.1:72473632-72473651 | MS.gene84840:CDS | 30.0% | |
| TACAGAGTGAGTTATATAAG+TGG | + | chr8.1:72473778-72473797 | MS.gene84840:intron | 30.0% | |
| !! | CAATTTTTGAAAGCTTTGAC+CGG | - | chr8.1:72474170-72474189 | None:intergenic | 30.0% |
| !! | TGCTCTGAAATTTAATGTCT+TGG | + | chr8.1:72474116-72474135 | MS.gene84840:CDS | 30.0% |
| ACTTTAGTTGTAGGAGAATC+AGG | - | chr8.1:72474043-72474062 | None:intergenic | 35.0% | |
| AGTTAACCATGACAGCATTT+GGG | - | chr8.1:72473676-72473695 | None:intergenic | 35.0% | |
| ATGAGTTCATCATGTATGAC+CGG | + | chr8.1:72474148-72474167 | MS.gene84840:CDS | 35.0% | |
| GCATACTTGATGGAATTCAA+AGG | + | chr8.1:72473623-72473642 | MS.gene84840:CDS | 35.0% | |
| TGATGAAGCACAAAGAATGA+AGG | + | chr8.1:72474209-72474228 | MS.gene84840:CDS | 35.0% | |
| ! | TTTGGGACTATTATGAGATG+TGG | - | chr8.1:72473659-72473678 | None:intergenic | 35.0% |
| !!! | TTTTAGCTCGTGATCTTGAT+AGG | + | chr8.1:72474244-72474263 | MS.gene84840:CDS | 35.0% |
| AATAGTCCCAAATGCTGTCA+TGG | + | chr8.1:72473667-72473686 | MS.gene84840:CDS | 40.0% | |
| CAAATGCTGTCATGGTTAAC+TGG | + | chr8.1:72473675-72473694 | MS.gene84840:CDS | 40.0% | |
| CAGTTAACCATGACAGCATT+TGG | - | chr8.1:72473677-72473696 | None:intergenic | 40.0% | |
| TAAAAGATGCACGACACAGA+TGG | - | chr8.1:72473807-72473826 | None:intergenic | 40.0% | |
| TCATCAAGTAAGTGTGCATC+AGG | + | chr8.1:72473860-72473879 | MS.gene84840:intron | 40.0% | |
| !! | CAAAGACGTCTACTTTTGAC+AGG | + | chr8.1:72474276-72474295 | MS.gene84840:CDS | 40.0% |
| !! | GGCATTGATTGCATACTTGA+TGG | + | chr8.1:72473613-72473632 | MS.gene84840:CDS | 40.0% |
| TGCTGTCATGGTTAACTGGA+AGG | + | chr8.1:72473679-72473698 | MS.gene84840:CDS | 45.0% | |
| ! | CATCTTTTATGCTGGAGGGA+AGG | + | chr8.1:72473818-72473837 | MS.gene84840:CDS | 45.0% |
| ! | CGTGCATCTTTTATGCTGGA+GGG | + | chr8.1:72473814-72473833 | MS.gene84840:CDS | 45.0% |
| ! | GTGTCGTGCATCTTTTATGC+TGG | + | chr8.1:72473810-72473829 | MS.gene84840:CDS | 45.0% |
| ! | TCGTGCATCTTTTATGCTGG+AGG | + | chr8.1:72473813-72473832 | MS.gene84840:CDS | 45.0% |
| TTTGACAGGAACGCCGTTGC+AGG | + | chr8.1:72474290-72474309 | MS.gene84840:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 72473608 | 72474311 | 72473608 | ID=MS.gene84840 |
| chr8.1 | mRNA | 72473608 | 72474311 | 72473608 | ID=MS.gene84840.t1;Parent=MS.gene84840 |
| chr8.1 | exon | 72473608 | 72473700 | 72473608 | ID=MS.gene84840.t1.exon1;Parent=MS.gene84840.t1 |
| chr8.1 | CDS | 72473608 | 72473700 | 72473608 | ID=cds.MS.gene84840.t1;Parent=MS.gene84840.t1 |
| chr8.1 | exon | 72473783 | 72473866 | 72473783 | ID=MS.gene84840.t1.exon2;Parent=MS.gene84840.t1 |
| chr8.1 | CDS | 72473783 | 72473866 | 72473783 | ID=cds.MS.gene84840.t1;Parent=MS.gene84840.t1 |
| chr8.1 | exon | 72474111 | 72474311 | 72474111 | ID=MS.gene84840.t1.exon3;Parent=MS.gene84840.t1 |
| chr8.1 | CDS | 72474111 | 72474311 | 72474111 | ID=cds.MS.gene84840.t1;Parent=MS.gene84840.t1 |
| Gene Sequence |
| Protein sequence |
