Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86314.t1 | XP_013465757.1 | 97.4 | 229 | 6 | 0 | 1 | 229 | 1 | 229 | 1.50E-120 | 442.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86314.t1 | A0A072VEB9 | 97.4 | 229 | 6 | 0 | 1 | 229 | 33 | 261 | 1.1e-120 | 442.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049346 | MS.gene86314 | 0.807986 | 3.87E-50 | -1.69E-46 |
| MS.gene049356 | MS.gene86314 | 0.813608 | 2.35E-51 | -1.69E-46 |
| MS.gene049369 | MS.gene86314 | 0.804662 | 1.94E-49 | -1.69E-46 |
| MS.gene049427 | MS.gene86314 | 0.821172 | 4.65E-53 | -1.69E-46 |
| MS.gene049661 | MS.gene86314 | 0.843541 | 1.32E-58 | -1.69E-46 |
| MS.gene049662 | MS.gene86314 | 0.847645 | 1.01E-59 | -1.69E-46 |
| MS.gene049758 | MS.gene86314 | 0.838836 | 2.27E-57 | -1.69E-46 |
| MS.gene050076 | MS.gene86314 | 0.821842 | 3.26E-53 | -1.69E-46 |
| MS.gene050128 | MS.gene86314 | 0.815574 | 8.62E-52 | -1.69E-46 |
| MS.gene050301 | MS.gene86314 | 0.863451 | 2.47E-64 | -1.69E-46 |
| MS.gene050397 | MS.gene86314 | 0.829795 | 4.21E-55 | -1.69E-46 |
| MS.gene050404 | MS.gene86314 | 0.800297 | 1.54E-48 | -1.69E-46 |
| MS.gene050406 | MS.gene86314 | 0.819824 | 9.48E-53 | -1.69E-46 |
| MS.gene050432 | MS.gene86314 | 0.861335 | 1.10E-63 | -1.69E-46 |
| MS.gene050464 | MS.gene86314 | 0.836814 | 7.51E-57 | -1.69E-46 |
| MS.gene050529 | MS.gene86314 | 0.845602 | 3.67E-59 | -1.69E-46 |
| MS.gene050670 | MS.gene86314 | 0.818431 | 1.97E-52 | -1.69E-46 |
| MS.gene050783 | MS.gene86314 | 0.810687 | 1.02E-50 | -1.69E-46 |
| MS.gene05101 | MS.gene86314 | 0.843641 | 1.24E-58 | -1.69E-46 |
| MS.gene05105 | MS.gene86314 | 0.835635 | 1.50E-56 | -1.69E-46 |
| MS.gene051471 | MS.gene86314 | 0.826614 | 2.46E-54 | -1.69E-46 |
| MS.gene051582 | MS.gene86314 | 0.819763 | 9.79E-53 | -1.69E-46 |
| MS.gene052077 | MS.gene86314 | 0.809286 | 2.04E-50 | -1.69E-46 |
| MS.gene052078 | MS.gene86314 | 0.846506 | 2.08E-59 | -1.69E-46 |
| MS.gene052178 | MS.gene86314 | 0.833367 | 5.56E-56 | -1.69E-46 |
| MS.gene052188 | MS.gene86314 | 0.85188 | 6.65E-61 | -1.69E-46 |
| MS.gene052253 | MS.gene86314 | 0.817044 | 4.04E-52 | -1.69E-46 |
| MS.gene052310 | MS.gene86314 | 0.851725 | 7.36E-61 | -1.69E-46 |
| MS.gene052326 | MS.gene86314 | 0.805988 | 1.02E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene86314 | 0.835613 | 1.52E-56 | -1.69E-46 |
| MS.gene052421 | MS.gene86314 | 0.802231 | 6.19E-49 | -1.69E-46 |
| MS.gene052485 | MS.gene86314 | 0.809611 | 1.74E-50 | -1.69E-46 |
| MS.gene053209 | MS.gene86314 | 0.844513 | 7.22E-59 | -1.69E-46 |
| MS.gene053557 | MS.gene86314 | 0.831709 | 1.43E-55 | -1.69E-46 |
| MS.gene053836 | MS.gene86314 | 0.84293 | 1.91E-58 | -1.69E-46 |
| MS.gene053928 | MS.gene86314 | 0.845904 | 3.04E-59 | -1.69E-46 |
| MS.gene054123 | MS.gene86314 | 0.829797 | 4.21E-55 | -1.69E-46 |
| MS.gene054349 | MS.gene86314 | 0.828234 | 1.01E-54 | -1.69E-46 |
| MS.gene054376 | MS.gene86314 | 0.836915 | 7.07E-57 | -1.69E-46 |
| MS.gene055116 | MS.gene86314 | 0.878287 | 3.17E-69 | -1.69E-46 |
| MS.gene055277 | MS.gene86314 | 0.880517 | 5.14E-70 | -1.69E-46 |
| MS.gene055390 | MS.gene86314 | 0.827069 | 1.92E-54 | -1.69E-46 |
| MS.gene055422 | MS.gene86314 | 0.832766 | 7.84E-56 | -1.69E-46 |
| MS.gene055428 | MS.gene86314 | 0.842824 | 2.04E-58 | -1.69E-46 |
| MS.gene05553 | MS.gene86314 | 0.827579 | 1.45E-54 | -1.69E-46 |
| MS.gene055564 | MS.gene86314 | 0.803857 | 2.85E-49 | -1.69E-46 |
| MS.gene055604 | MS.gene86314 | 0.836302 | 1.01E-56 | -1.69E-46 |
| MS.gene055712 | MS.gene86314 | 0.801795 | 7.61E-49 | -1.69E-46 |
| MS.gene056191 | MS.gene86314 | 0.817387 | 3.39E-52 | -1.69E-46 |
| MS.gene056407 | MS.gene86314 | 0.850278 | 1.88E-60 | -1.69E-46 |
| MS.gene056410 | MS.gene86314 | 0.809653 | 1.70E-50 | -1.69E-46 |
| MS.gene056511 | MS.gene86314 | 0.809313 | 2.01E-50 | -1.69E-46 |
| MS.gene056609 | MS.gene86314 | 0.826384 | 2.79E-54 | -1.69E-46 |
| MS.gene056612 | MS.gene86314 | 0.845301 | 4.42E-59 | -1.69E-46 |
| MS.gene056659 | MS.gene86314 | 0.822991 | 1.76E-53 | -1.69E-46 |
| MS.gene05702 | MS.gene86314 | 0.888489 | 5.64E-73 | -1.69E-46 |
| MS.gene057124 | MS.gene86314 | 0.830195 | 3.37E-55 | -1.69E-46 |
| MS.gene057396 | MS.gene86314 | 0.831103 | 2.02E-55 | -1.69E-46 |
| MS.gene057448 | MS.gene86314 | 0.814494 | 1.50E-51 | -1.69E-46 |
| MS.gene057449 | MS.gene86314 | 0.805244 | 1.47E-49 | -1.69E-46 |
| MS.gene057450 | MS.gene86314 | 0.814271 | 1.68E-51 | -1.69E-46 |
| MS.gene057749 | MS.gene86314 | 0.83016 | 3.43E-55 | -1.69E-46 |
| MS.gene057823 | MS.gene86314 | 0.826335 | 2.87E-54 | -1.69E-46 |
| MS.gene057825 | MS.gene86314 | 0.808218 | 3.45E-50 | -1.69E-46 |
| MS.gene057927 | MS.gene86314 | 0.820412 | 6.95E-53 | -1.69E-46 |
| MS.gene058002 | MS.gene86314 | 0.862014 | 6.84E-64 | -1.69E-46 |
| MS.gene058019 | MS.gene86314 | 0.802462 | 5.55E-49 | -1.69E-46 |
| MS.gene058082 | MS.gene86314 | 0.81381 | 2.12E-51 | -1.69E-46 |
| MS.gene05811 | MS.gene86314 | 0.821409 | 4.10E-53 | -1.69E-46 |
| MS.gene058142 | MS.gene86314 | 0.82717 | 1.81E-54 | -1.69E-46 |
| MS.gene058233 | MS.gene86314 | 0.833711 | 4.56E-56 | -1.69E-46 |
| MS.gene058276 | MS.gene86314 | 0.80496 | 1.68E-49 | -1.69E-46 |
| MS.gene058293 | MS.gene86314 | 0.825663 | 4.15E-54 | -1.69E-46 |
| MS.gene058365 | MS.gene86314 | 0.841102 | 5.82E-58 | -1.69E-46 |
| MS.gene058660 | MS.gene86314 | 0.851618 | 7.89E-61 | -1.69E-46 |
| MS.gene058787 | MS.gene86314 | 0.829961 | 3.84E-55 | -1.69E-46 |
| MS.gene05886 | MS.gene86314 | 0.804344 | 2.26E-49 | -1.69E-46 |
| MS.gene058928 | MS.gene86314 | 0.831605 | 1.52E-55 | -1.69E-46 |
| MS.gene058949 | MS.gene86314 | 0.802452 | 5.57E-49 | -1.69E-46 |
| MS.gene059011 | MS.gene86314 | 0.824813 | 6.59E-54 | -1.69E-46 |
| MS.gene05907 | MS.gene86314 | 0.852285 | 5.10E-61 | -1.69E-46 |
| MS.gene059294 | MS.gene86314 | 0.809193 | 2.14E-50 | -1.69E-46 |
| MS.gene059366 | MS.gene86314 | 0.804912 | 1.72E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene86314 | 0.830101 | 3.55E-55 | -1.69E-46 |
| MS.gene059597 | MS.gene86314 | 0.840338 | 9.23E-58 | -1.69E-46 |
| MS.gene05959 | MS.gene86314 | 0.811793 | 5.86E-51 | -1.69E-46 |
| MS.gene059676 | MS.gene86314 | 0.834364 | 3.13E-56 | -1.69E-46 |
| MS.gene059688 | MS.gene86314 | 0.851845 | 6.81E-61 | -1.69E-46 |
| MS.gene059692 | MS.gene86314 | 0.856284 | 3.57E-62 | -1.69E-46 |
| MS.gene059695 | MS.gene86314 | 0.857341 | 1.74E-62 | -1.69E-46 |
| MS.gene059708 | MS.gene86314 | 0.803261 | 3.79E-49 | -1.69E-46 |
| MS.gene059807 | MS.gene86314 | 0.806742 | 7.10E-50 | -1.69E-46 |
| MS.gene059894 | MS.gene86314 | 0.845735 | 3.37E-59 | -1.69E-46 |
| MS.gene059960 | MS.gene86314 | 0.801406 | 9.14E-49 | -1.69E-46 |
| MS.gene059974 | MS.gene86314 | 0.806658 | 7.39E-50 | -1.69E-46 |
| MS.gene06037 | MS.gene86314 | 0.869122 | 3.92E-66 | -1.69E-46 |
| MS.gene060403 | MS.gene86314 | 0.820895 | 5.39E-53 | -1.69E-46 |
| MS.gene060407 | MS.gene86314 | 0.822981 | 1.77E-53 | -1.69E-46 |
| MS.gene060495 | MS.gene86314 | 0.824247 | 8.95E-54 | -1.69E-46 |
| MS.gene060804 | MS.gene86314 | 0.820378 | 7.08E-53 | -1.69E-46 |
| MS.gene060971 | MS.gene86314 | 0.833184 | 6.17E-56 | -1.69E-46 |
| MS.gene061041 | MS.gene86314 | 0.805396 | 1.36E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene86314 | 0.887481 | 1.37E-72 | -1.69E-46 |
| MS.gene061051 | MS.gene86314 | -0.848675 | 5.27E-60 | -1.69E-46 |
| MS.gene061112 | MS.gene86314 | 0.802088 | 6.62E-49 | -1.69E-46 |
| MS.gene061154 | MS.gene86314 | 0.825409 | 4.76E-54 | -1.69E-46 |
| MS.gene061159 | MS.gene86314 | 0.823222 | 1.56E-53 | -1.69E-46 |
| MS.gene061265 | MS.gene86314 | 0.805402 | 1.36E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86314.t1 | MTR_1g010080 | 97.380 | 229 | 6 | 0 | 1 | 229 | 1 | 229 | 9.01e-169 | 464 |
| MS.gene86314.t1 | MTR_1g010080 | 97.380 | 229 | 6 | 0 | 1 | 229 | 33 | 261 | 4.83e-168 | 463 |
| MS.gene86314.t1 | MTR_1g050530 | 25.000 | 196 | 131 | 5 | 9 | 201 | 29 | 211 | 2.35e-18 | 80.9 |
| MS.gene86314.t1 | MTR_7g074810 | 59.375 | 64 | 25 | 1 | 152 | 214 | 18 | 81 | 3.07e-14 | 66.2 |
| MS.gene86314.t1 | MTR_1g050530 | 31.579 | 95 | 61 | 2 | 48 | 141 | 59 | 150 | 1.32e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86314.t1 | AT4G31115 | 56.410 | 195 | 77 | 2 | 13 | 205 | 53 | 241 | 1.14e-70 | 216 |
| MS.gene86314.t1 | AT4G31115 | 56.410 | 195 | 77 | 2 | 13 | 205 | 77 | 265 | 3.62e-70 | 216 |
| MS.gene86314.t1 | AT5G04440 | 27.692 | 195 | 125 | 4 | 11 | 202 | 60 | 241 | 4.01e-21 | 89.0 |
| MS.gene86314.t1 | AT5G04440 | 27.604 | 192 | 119 | 5 | 11 | 197 | 60 | 236 | 8.23e-19 | 82.4 |
Find 41 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACCTTCAACGGCTGAAAT+AGG | 0.309804 | 1.3:+10136387 | None:intergenic |
| AAATTTGTTTGCTGCCAAAA+AGG | 0.320295 | 1.3:-10138411 | MS.gene86314:CDS |
| TAAATAACTCACATGTTTCC+AGG | 0.371138 | 1.3:+10136366 | None:intergenic |
| GGTTGAAATGATTTCTTGTA+AGG | 0.383448 | 1.3:-10137493 | MS.gene86314:intron |
| ATTTCAGCCGTTGAAGGTCC+TGG | 0.421555 | 1.3:-10136384 | MS.gene86314:CDS |
| CTCAACAGATGAAGATTGCT+TGG | 0.427861 | 1.3:-10137514 | MS.gene86314:CDS |
| TGGTACAAGGTTATGATGAA+TGG | 0.432437 | 1.3:-10136101 | MS.gene86314:CDS |
| AACTTCAAAAGTTTAAGTTT+CGG | 0.449422 | 1.3:+10137570 | None:intergenic |
| CTCTTGATGCTAACACATAC+AGG | 0.460337 | 1.3:-10138256 | MS.gene86314:intron |
| CTACTTCAACAGATGGTACA+AGG | 0.480356 | 1.3:-10136114 | MS.gene86314:CDS |
| TAGTAAGAAAATGGACATCA+AGG | 0.490517 | 1.3:-10138474 | None:intergenic |
| GGTACAAGGTTATGATGAAT+GGG | 0.494532 | 1.3:-10136100 | MS.gene86314:CDS |
| CATGTTTCCAGGACCTTCAA+CGG | 0.498643 | 1.3:+10136377 | None:intergenic |
| AACGGCTGAAATAGGCATTA+CGG | 0.503607 | 1.3:+10136395 | None:intergenic |
| CAGAATGATGCAAGCTTTGG+TGG | 0.509605 | 1.3:-10136154 | MS.gene86314:CDS |
| GAAATAGGCATTACGGTGAA+TGG | 0.513014 | 1.3:+10136402 | None:intergenic |
| ATGCCTATTTCAGCCGTTGA+AGG | 0.519281 | 1.3:-10136390 | MS.gene86314:CDS |
| GTTTGAGGGTTCAGAAATTG+TGG | 0.524442 | 1.3:-10136972 | MS.gene86314:CDS |
| GTGCAGAATGATGCAAGCTT+TGG | 0.528382 | 1.3:-10136157 | MS.gene86314:intron |
| CTGCAGCAATTCCACTAGGC+TGG | 0.547161 | 1.3:+10138312 | None:intergenic |
| CTAAATCAGTCTTCTAGTGA+AGG | 0.548895 | 1.3:-10136057 | MS.gene86314:CDS |
| TGATGATGTTCTTGGAGGAC+AGG | 0.553433 | 1.3:-10138360 | MS.gene86314:CDS |
| GGTGAAGGCGGTGACTTCCT+CGG | 0.560745 | 1.3:-10138453 | MS.gene86314:CDS |
| TTATACAGATACCTGAAAAG+TGG | 0.561577 | 1.3:+10136936 | None:intergenic |
| CAAGCAATCTTCATCTGTTG+AGG | 0.563145 | 1.3:+10137515 | None:intergenic |
| ACCATCTGTTGAAGTAGAAG+TGG | 0.580440 | 1.3:+10136120 | None:intergenic |
| GGCTTAGAAATTCACTGATG+TGG | 0.588070 | 1.3:+10138333 | None:intergenic |
| GATGATGATGATGTTCTTGG+AGG | 0.598580 | 1.3:-10138365 | MS.gene86314:CDS |
| TTATGGTAAATCACATGACA+TGG | 0.600493 | 1.3:-10136672 | MS.gene86314:CDS |
| GAAAATGGACATCAAGGTGA+AGG | 0.614833 | 1.3:-10138468 | None:intergenic |
| TTTCTTTGCATTTGAATCCG+AGG | 0.616050 | 1.3:+10138436 | None:intergenic |
| TAGTAGAGACAACAGAGGGA+GGG | 0.616278 | 1.3:-10136026 | MS.gene86314:CDS |
| GCCACTTCTACTTCAACAGA+TGG | 0.618609 | 1.3:-10136121 | MS.gene86314:CDS |
| TTTGTAGTAGAGACAACAGA+GGG | 0.633580 | 1.3:-10136030 | MS.gene86314:CDS |
| GTAGTAGAGACAACAGAGGG+AGG | 0.648680 | 1.3:-10136027 | MS.gene86314:CDS |
| GAATTTCTAAGCCAGCCTAG+TGG | 0.653471 | 1.3:-10138323 | MS.gene86314:CDS |
| AATGGACATCAAGGTGAAGG+CGG | 0.660410 | 1.3:-10138465 | MS.gene86314:CDS |
| GTAACACGCAGATCTATGAA+AGG | 0.668571 | 1.3:+10137537 | None:intergenic |
| AACACTGCAGCAATTCCACT+AGG | 0.669903 | 1.3:+10138308 | None:intergenic |
| TGCTGCAGTGTTGAACACAA+AGG | 0.698890 | 1.3:-10138297 | MS.gene86314:CDS |
| GAAGTTGAATCTCACACTTG+AGG | 0.720167 | 1.3:-10136611 | MS.gene86314:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATAATATAGAAAATG+TGG | - | chr1.3:10138294-10138313 | MS.gene86314:CDS | 10.0% |
| !! | ATGATTAAGATTTATTACAT+AGG | + | chr1.3:10137128-10137147 | None:intergenic | 15.0% |
| !! | GCTTAAATTATTCTTTAAAT+GGG | - | chr1.3:10136274-10136293 | MS.gene86314:intron | 15.0% |
| !! | TGATTAAGATTTATTACATA+GGG | + | chr1.3:10137127-10137146 | None:intergenic | 15.0% |
| !!! | TAAATAAATATGCATGTTTT+AGG | + | chr1.3:10137362-10137381 | None:intergenic | 15.0% |
| !! | AAATTATTCTTTAAATGGGT+TGG | - | chr1.3:10136278-10136297 | MS.gene86314:intron | 20.0% |
| !! | AACAATTCTTCAAATCAAAA+TGG | + | chr1.3:10137282-10137301 | None:intergenic | 20.0% |
| !! | GAAATACTATTCCTTATATT+TGG | - | chr1.3:10136471-10136490 | MS.gene86314:intron | 20.0% |
| !! | GGCTTAAATTATTCTTTAAA+TGG | - | chr1.3:10136273-10136292 | MS.gene86314:intron | 20.0% |
| !! | TAATTACTTATTGTATGTGT+AGG | - | chr1.3:10136876-10136895 | MS.gene86314:intron | 20.0% |
| !! | TAGAATCATATAATATCACA+AGG | + | chr1.3:10138250-10138269 | None:intergenic | 20.0% |
| !! | TGTAGCAAAAGATAAAATAA+AGG | - | chr1.3:10136573-10136592 | MS.gene86314:intron | 20.0% |
| !!! | AACTTCAAAAGTTTAAGTTT+CGG | + | chr1.3:10136911-10136930 | None:intergenic | 20.0% |
| !!! | AATCAATTGTCTAAAGTTTT+TGG | - | chr1.3:10136745-10136764 | MS.gene86314:intron | 20.0% |
| !!! | AGCTTGTTTTTTTATTCTTT+TGG | - | chr1.3:10137030-10137049 | MS.gene86314:intron | 20.0% |
| !!! | ATATATTTTTTTGCAGTTTG+AGG | - | chr1.3:10137491-10137510 | MS.gene86314:intron | 20.0% |
| !!! | GAAGTATTCAAAAATGAAAT+AGG | + | chr1.3:10137468-10137487 | None:intergenic | 20.0% |
| !!! | TATATTTTTTTGCAGTTTGA+GGG | - | chr1.3:10137492-10137511 | MS.gene86314:intron | 20.0% |
| !!! | TTTAGACAATTGATTCTATA+GGG | + | chr1.3:10136740-10136759 | None:intergenic | 20.0% |
| ! | AATTGAAATAGCAAGGATTA+AGG | + | chr1.3:10137959-10137978 | None:intergenic | 25.0% |
| ! | AGTTTCACCATATACAAAAT+AGG | - | chr1.3:10136445-10136464 | MS.gene86314:intron | 25.0% |
| ! | ATGCTTATTAATCCTTTCTA+TGG | - | chr1.3:10137771-10137790 | MS.gene86314:intron | 25.0% |
| ! | CTGACTATAGAAATAGAATT+AGG | + | chr1.3:10136392-10136411 | None:intergenic | 25.0% |
| ! | GATAAGAAATTGAAATAGCA+AGG | + | chr1.3:10137966-10137985 | None:intergenic | 25.0% |
| ! | TTAATCATCATTCGTGAAAA+TGG | - | chr1.3:10137140-10137159 | MS.gene86314:intron | 25.0% |
| ! | TTTATTTAACTAATGCCCTA+CGG | - | chr1.3:10137374-10137393 | MS.gene86314:intron | 25.0% |
| !! | ACATATCTTCAATTCTTTTC+TGG | - | chr1.3:10136249-10136268 | MS.gene86314:intron | 25.0% |
| !! | CTTTAGACAATTGATTCTAT+AGG | + | chr1.3:10136741-10136760 | None:intergenic | 25.0% |
| !! | TTTCCAACCTATTTTGTATA+TGG | + | chr1.3:10136455-10136474 | None:intergenic | 25.0% |
| AAAAGACAGACTTTGTAATC+AGG | + | chr1.3:10137204-10137223 | None:intergenic | 30.0% | |
| AAGCTGTAAAATCCTGTAAA+GGG | + | chr1.3:10137015-10137034 | None:intergenic | 30.0% | |
| ACATCATCATCATCATATGT+TGG | + | chr1.3:10136107-10136126 | None:intergenic | 30.0% | |
| AGTCACACATTCCAAATATA+AGG | + | chr1.3:10136485-10136504 | None:intergenic | 30.0% | |
| ATTTAGATGCTTACTCATAC+AGG | + | chr1.3:10136513-10136532 | None:intergenic | 30.0% | |
| GAACAGAATGATAACTCTTA+TGG | - | chr1.3:10138173-10138192 | MS.gene86314:intron | 30.0% | |
| GCTTATATAAGCTTATCTAC+TGG | + | chr1.3:10136704-10136723 | None:intergenic | 30.0% | |
| GGTTGAAATGATTTCTTGTA+AGG | - | chr1.3:10136985-10137004 | MS.gene86314:intron | 30.0% | |
| TAAATAACTCACATGTTTCC+AGG | + | chr1.3:10138115-10138134 | None:intergenic | 30.0% | |
| TCACCATATACAAAATAGGT+TGG | - | chr1.3:10136449-10136468 | MS.gene86314:intron | 30.0% | |
| TTATACAGATACCTGAAAAG+TGG | + | chr1.3:10137545-10137564 | None:intergenic | 30.0% | |
| TTATGGTAAATCACATGACA+TGG | - | chr1.3:10137806-10137825 | MS.gene86314:intron | 30.0% | |
| TTTAGATGCTTACTCATACA+GGG | + | chr1.3:10136512-10136531 | None:intergenic | 30.0% | |
| TTTATAACCATGTTATCCGT+CGG | - | chr1.3:10137570-10137589 | MS.gene86314:CDS | 30.0% | |
| ! | AAATTTGTTTGCTGCCAAAA+AGG | - | chr1.3:10136067-10136086 | MS.gene86314:CDS | 30.0% |
| ! | ATATTTGGAATGTGTGACTA+TGG | - | chr1.3:10136486-10136505 | MS.gene86314:intron | 30.0% |
| ! | TAGTTTAACTCTGTCCTTTT+TGG | + | chr1.3:10136084-10136103 | None:intergenic | 30.0% |
| ! | TATCTTCAATTCTTTTCTGG+TGG | - | chr1.3:10136252-10136271 | MS.gene86314:intron | 30.0% |
| ! | TATGATGATGATGATGTTCT+TGG | - | chr1.3:10136110-10136129 | MS.gene86314:CDS | 30.0% |
| ! | TATGGATTTTGCAGCATTTA+TGG | - | chr1.3:10137789-10137808 | MS.gene86314:intron | 30.0% |
| ! | TGCTGATACTGAATCATTTT+TGG | - | chr1.3:10137834-10137853 | MS.gene86314:intron | 30.0% |
| !! | ATTCTTTAAATGGGTTGGTT+TGG | - | chr1.3:10136283-10136302 | MS.gene86314:intron | 30.0% |
| ATCACGTTTATCAAACCGTA+GGG | + | chr1.3:10137392-10137411 | None:intergenic | 35.0% | |
| ATCCCATAAACACAACCTAT+GGG | + | chr1.3:10137717-10137736 | None:intergenic | 35.0% | |
| ATCCCATAGGTTGTGTTTAT+GGG | - | chr1.3:10137712-10137731 | MS.gene86314:intron | 35.0% | |
| ATGCTGCAAAATCCATAGAA+AGG | + | chr1.3:10137786-10137805 | None:intergenic | 35.0% | |
| CAAGCTGTAAAATCCTGTAA+AGG | + | chr1.3:10137016-10137035 | None:intergenic | 35.0% | |
| CTAAATCAGTCTTCTAGTGA+AGG | - | chr1.3:10138421-10138440 | MS.gene86314:CDS | 35.0% | |
| GGTACAAGGTTATGATGAAT+GGG | - | chr1.3:10138378-10138397 | MS.gene86314:CDS | 35.0% | |
| TATCACGTTTATCAAACCGT+AGG | + | chr1.3:10137393-10137412 | None:intergenic | 35.0% | |
| TATCCCATAAACACAACCTA+TGG | + | chr1.3:10137718-10137737 | None:intergenic | 35.0% | |
| TCGAAAAAATGTGGTTGAGA+TGG | + | chr1.3:10137677-10137696 | None:intergenic | 35.0% | |
| TGAAATAGCAAGGATTAAGG+AGG | + | chr1.3:10137956-10137975 | None:intergenic | 35.0% | |
| TGCCTTTAACTAATCTCCAT+TGG | - | chr1.3:10137611-10137630 | MS.gene86314:intron | 35.0% | |
| TGGTACAAGGTTATGATGAA+TGG | - | chr1.3:10138377-10138396 | MS.gene86314:CDS | 35.0% | |
| TTGTAATCAGGTGACTTCAT+GGG | + | chr1.3:10137192-10137211 | None:intergenic | 35.0% | |
| TTTCTTTGCATTTGAATCCG+AGG | + | chr1.3:10136045-10136064 | None:intergenic | 35.0% | |
| TTTGTAATCAGGTGACTTCA+TGG | + | chr1.3:10137193-10137212 | None:intergenic | 35.0% | |
| TTTGTAGTAGAGACAACAGA+GGG | - | chr1.3:10138448-10138467 | MS.gene86314:CDS | 35.0% | |
| ! | AATAAGCATTGTTGTGACAC+AGG | + | chr1.3:10137760-10137779 | None:intergenic | 35.0% |
| ! | AGATTAGTTAAAGGCAAAGC+TGG | + | chr1.3:10137607-10137626 | None:intergenic | 35.0% |
| ! | ATAAGCATTGTTGTGACACA+GGG | + | chr1.3:10137759-10137778 | None:intergenic | 35.0% |
| ! | CTCCAATGGAGATTAGTTAA+AGG | + | chr1.3:10137616-10137635 | None:intergenic | 35.0% |
| ! | TTGATTCTATAGGGCTTGTT+TGG | + | chr1.3:10136731-10136750 | None:intergenic | 35.0% |
| ! | TTTTGTAGTAGAGACAACAG+AGG | - | chr1.3:10138447-10138466 | MS.gene86314:CDS | 35.0% |
| AACGGCTGAAATAGGCATTA+CGG | + | chr1.3:10138086-10138105 | None:intergenic | 40.0% | |
| ACCATCTGTTGAAGTAGAAG+TGG | + | chr1.3:10138361-10138380 | None:intergenic | 40.0% | |
| CAAGCAATCTTCATCTGTTG+AGG | + | chr1.3:10136966-10136985 | None:intergenic | 40.0% | |
| CACTCAATCAGATTCTCCAA+TGG | + | chr1.3:10137630-10137649 | None:intergenic | 40.0% | |
| CCATGGACTTCGAAAAAATG+TGG | + | chr1.3:10137686-10137705 | None:intergenic | 40.0% | |
| CTACTTCAACAGATGGTACA+AGG | - | chr1.3:10138364-10138383 | MS.gene86314:CDS | 40.0% | |
| CTCAACAGATGAAGATTGCT+TGG | - | chr1.3:10136964-10136983 | MS.gene86314:CDS | 40.0% | |
| CTCTTGATGCTAACACATAC+AGG | - | chr1.3:10136222-10136241 | MS.gene86314:intron | 40.0% | |
| GAAATAGGCATTACGGTGAA+TGG | + | chr1.3:10138079-10138098 | None:intergenic | 40.0% | |
| GAAGTTGAATCTCACACTTG+AGG | - | chr1.3:10137867-10137886 | MS.gene86314:intron | 40.0% | |
| GATCCCATAGGTTGTGTTTA+TGG | - | chr1.3:10137711-10137730 | MS.gene86314:intron | 40.0% | |
| GGCTTAGAAATTCACTGATG+TGG | + | chr1.3:10136148-10136167 | None:intergenic | 40.0% | |
| GTAACACGCAGATCTATGAA+AGG | + | chr1.3:10136944-10136963 | None:intergenic | 40.0% | |
| GTTTGAGGGTTCAGAAATTG+TGG | - | chr1.3:10137506-10137525 | MS.gene86314:CDS | 40.0% | |
| TTAGTTAAAGGCAAAGCTGG+TGG | + | chr1.3:10137604-10137623 | None:intergenic | 40.0% | |
| TTGTTGTGACACAGGGAAAA+CGG | + | chr1.3:10137752-10137771 | None:intergenic | 40.0% | |
| ! | GATGATGATGATGTTCTTGG+AGG | - | chr1.3:10136113-10136132 | MS.gene86314:CDS | 40.0% |
| ! | TCTATAGGGCTTGTTTGGAT+TGG | + | chr1.3:10136726-10136745 | None:intergenic | 40.0% |
| ! | TTGTAAGGTGTTCCCTTTAC+AGG | - | chr1.3:10137000-10137019 | MS.gene86314:intron | 40.0% |
| !! | TTCTTTTGGAGAGCAACAGA+TGG | - | chr1.3:10137044-10137063 | MS.gene86314:intron | 40.0% |
| !!! | CCACATTTTTTCGAAGTCCA+TGG | - | chr1.3:10137683-10137702 | MS.gene86314:intron | 40.0% |
| AACACTGCAGCAATTCCACT+AGG | + | chr1.3:10136173-10136192 | None:intergenic | 45.0% | |
| ATGCCTATTTCAGCCGTTGA+AGG | - | chr1.3:10138088-10138107 | MS.gene86314:intron | 45.0% | |
| CATGTTTCCAGGACCTTCAA+CGG | + | chr1.3:10138104-10138123 | None:intergenic | 45.0% | |
| GAATTTCTAAGCCAGCCTAG+TGG | - | chr1.3:10136155-10136174 | MS.gene86314:intron | 45.0% | |
| GCCACTTCTACTTCAACAGA+TGG | - | chr1.3:10138357-10138376 | MS.gene86314:CDS | 45.0% | |
| GGAGAATCTGATTGAGTGAC+TGG | - | chr1.3:10137632-10137651 | MS.gene86314:intron | 45.0% | |
| GTGCAGAATGATGCAAGCTT+TGG | - | chr1.3:10138321-10138340 | MS.gene86314:CDS | 45.0% | |
| TAGTAGAGACAACAGAGGGA+GGG | - | chr1.3:10138452-10138471 | MS.gene86314:CDS | 45.0% | |
| TGTTGTGACACAGGGAAAAC+GGG | + | chr1.3:10137751-10137770 | None:intergenic | 45.0% | |
| TTGGAGAGCAACAGATGGAA+TGG | - | chr1.3:10137049-10137068 | MS.gene86314:intron | 45.0% | |
| ! | CAGAATGATGCAAGCTTTGG+TGG | - | chr1.3:10138324-10138343 | MS.gene86314:CDS | 45.0% |
| ! | TGATGATGTTCTTGGAGGAC+AGG | - | chr1.3:10136118-10136137 | MS.gene86314:CDS | 45.0% |
| ! | TGCTGCAGTGTTGAACACAA+AGG | - | chr1.3:10136181-10136200 | MS.gene86314:intron | 45.0% |
| !! | GAGCTAAACGACCACTTTTC+AGG | - | chr1.3:10137531-10137550 | MS.gene86314:CDS | 45.0% |
| ACACGCACGATGAGATGCAT+TGG | - | chr1.3:10137085-10137104 | MS.gene86314:intron | 50.0% | |
| ACCTATGGGATCATGTGCCA+TGG | + | chr1.3:10137703-10137722 | None:intergenic | 50.0% | |
| ATGGAAGACCCCACTAAAGG+TGG | + | chr1.3:10137658-10137677 | None:intergenic | 50.0% | |
| ATTTCAGCCGTTGAAGGTCC+TGG | - | chr1.3:10138094-10138113 | MS.gene86314:intron | 50.0% | |
| CTTCACACCGACGGATAACA+TGG | + | chr1.3:10137580-10137599 | None:intergenic | 50.0% | |
| GAGATGGAAGACCCCACTAA+AGG | + | chr1.3:10137661-10137680 | None:intergenic | 50.0% | |
| GGACCTTCAACGGCTGAAAT+AGG | + | chr1.3:10138094-10138113 | None:intergenic | 50.0% | |
| GTAGTAGAGACAACAGAGGG+AGG | - | chr1.3:10138451-10138470 | MS.gene86314:CDS | 50.0% | |
| TCCATGGCACATGATCCCAT+AGG | - | chr1.3:10137699-10137718 | MS.gene86314:intron | 50.0% | |
| ! | AGTGACTGGCCACCTTTAGT+GGG | - | chr1.3:10137646-10137665 | MS.gene86314:intron | 50.0% |
| CTGCAGCAATTCCACTAGGC+TGG | + | chr1.3:10136169-10136188 | None:intergenic | 55.0% | |
| ! | GAGTGACTGGCCACCTTTAG+TGG | - | chr1.3:10137645-10137664 | MS.gene86314:intron | 55.0% |
| ! | GTGACTGGCCACCTTTAGTG+GGG | - | chr1.3:10137647-10137666 | MS.gene86314:intron | 55.0% |
| GGTGAAGGCGGTGACTTCCT+CGG | - | chr1.3:10136025-10136044 | MS.gene86314:CDS | 60.0% | |
| !! | GCTGGTGGACTTCACACCGA+CGG | + | chr1.3:10137589-10137608 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 10136014 | 10138486 | 10136014 | ID=MS.gene86314 |
| chr1.3 | mRNA | 10136014 | 10138486 | 10136014 | ID=MS.gene86314.t1;Parent=MS.gene86314 |
| chr1.3 | exon | 10138257 | 10138486 | 10138257 | ID=MS.gene86314.t1.exon1;Parent=MS.gene86314.t1 |
| chr1.3 | CDS | 10138257 | 10138486 | 10138257 | ID=cds.MS.gene86314.t1;Parent=MS.gene86314.t1 |
| chr1.3 | exon | 10137494 | 10137602 | 10137494 | ID=MS.gene86314.t1.exon2;Parent=MS.gene86314.t1 |
| chr1.3 | CDS | 10137494 | 10137602 | 10137494 | ID=cds.MS.gene86314.t1;Parent=MS.gene86314.t1 |
| chr1.3 | exon | 10136948 | 10136993 | 10136948 | ID=MS.gene86314.t1.exon3;Parent=MS.gene86314.t1 |
| chr1.3 | CDS | 10136948 | 10136993 | 10136948 | ID=cds.MS.gene86314.t1;Parent=MS.gene86314.t1 |
| chr1.3 | exon | 10136612 | 10136697 | 10136612 | ID=MS.gene86314.t1.exon4;Parent=MS.gene86314.t1 |
| chr1.3 | CDS | 10136612 | 10136697 | 10136612 | ID=cds.MS.gene86314.t1;Parent=MS.gene86314.t1 |
| chr1.3 | exon | 10136378 | 10136436 | 10136378 | ID=MS.gene86314.t1.exon5;Parent=MS.gene86314.t1 |
| chr1.3 | CDS | 10136378 | 10136436 | 10136378 | ID=cds.MS.gene86314.t1;Parent=MS.gene86314.t1 |
| chr1.3 | exon | 10136014 | 10136173 | 10136014 | ID=MS.gene86314.t1.exon6;Parent=MS.gene86314.t1 |
| chr1.3 | CDS | 10136014 | 10136173 | 10136014 | ID=cds.MS.gene86314.t1;Parent=MS.gene86314.t1 |
| Gene Sequence |
| Protein sequence |
