Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86355.t1 | XP_003597852.2 | 94.9 | 277 | 14 | 0 | 1 | 277 | 1 | 277 | 4.80E-142 | 513.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86355.t1 | Q06881 | 32.4 | 185 | 109 | 7 | 92 | 267 | 4 | 181 | 2.6e-11 | 70.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86355.t1 | G7IUS4 | 94.9 | 277 | 14 | 0 | 1 | 277 | 1 | 277 | 3.5e-142 | 513.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene86355 | 0.814681 | 1.36E-51 | -1.69E-46 |
| MS.gene049356 | MS.gene86355 | 0.844127 | 9.16E-59 | -1.69E-46 |
| MS.gene049369 | MS.gene86355 | 0.83148 | 1.63E-55 | -1.69E-46 |
| MS.gene049427 | MS.gene86355 | 0.808707 | 2.71E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene86355 | 0.821261 | 4.44E-53 | -1.69E-46 |
| MS.gene049805 | MS.gene86355 | 0.827657 | 1.39E-54 | -1.69E-46 |
| MS.gene050301 | MS.gene86355 | 0.822796 | 1.96E-53 | -1.69E-46 |
| MS.gene050397 | MS.gene86355 | 0.800181 | 1.63E-48 | -1.69E-46 |
| MS.gene050520 | MS.gene86355 | 0.810544 | 1.09E-50 | -1.69E-46 |
| MS.gene050593 | MS.gene86355 | 0.848463 | 6.03E-60 | -1.69E-46 |
| MS.gene050625 | MS.gene86355 | 0.803789 | 2.95E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene86355 | 0.88228 | 1.19E-70 | -1.69E-46 |
| MS.gene050747 | MS.gene86355 | 0.831203 | 1.91E-55 | -1.69E-46 |
| MS.gene050772 | MS.gene86355 | 0.814996 | 1.16E-51 | -1.69E-46 |
| MS.gene050950 | MS.gene86355 | 0.829027 | 6.48E-55 | -1.69E-46 |
| MS.gene050971 | MS.gene86355 | 0.82074 | 5.85E-53 | -1.69E-46 |
| MS.gene05105 | MS.gene86355 | 0.862018 | 6.82E-64 | -1.69E-46 |
| MS.gene051360 | MS.gene86355 | 0.846266 | 2.42E-59 | -1.69E-46 |
| MS.gene051387 | MS.gene86355 | 0.877978 | 4.07E-69 | -1.69E-46 |
| MS.gene051525 | MS.gene86355 | 0.845272 | 4.50E-59 | -1.69E-46 |
| MS.gene051582 | MS.gene86355 | 0.811576 | 6.53E-51 | -1.69E-46 |
| MS.gene052011 | MS.gene86355 | -0.822175 | 2.73E-53 | -1.69E-46 |
| MS.gene052188 | MS.gene86355 | 0.841942 | 3.50E-58 | -1.69E-46 |
| MS.gene052253 | MS.gene86355 | 0.831111 | 2.01E-55 | -1.69E-46 |
| MS.gene052310 | MS.gene86355 | 0.81171 | 6.11E-51 | -1.69E-46 |
| MS.gene052340 | MS.gene86355 | 0.811879 | 5.61E-51 | -1.69E-46 |
| MS.gene052414 | MS.gene86355 | 0.809522 | 1.82E-50 | -1.69E-46 |
| MS.gene052421 | MS.gene86355 | 0.873369 | 1.55E-67 | -1.69E-46 |
| MS.gene052485 | MS.gene86355 | 0.821279 | 4.39E-53 | -1.69E-46 |
| MS.gene052505 | MS.gene86355 | 0.808177 | 3.52E-50 | -1.69E-46 |
| MS.gene052615 | MS.gene86355 | 0.809454 | 1.88E-50 | -1.69E-46 |
| MS.gene052982 | MS.gene86355 | 0.842222 | 2.95E-58 | -1.69E-46 |
| MS.gene053103 | MS.gene86355 | 0.805945 | 1.04E-49 | -1.69E-46 |
| MS.gene053169 | MS.gene86355 | 0.806434 | 8.24E-50 | -1.69E-46 |
| MS.gene053207 | MS.gene86355 | 0.808628 | 2.82E-50 | -1.69E-46 |
| MS.gene053209 | MS.gene86355 | 0.832503 | 9.11E-56 | -1.69E-46 |
| MS.gene053322 | MS.gene86355 | 0.804259 | 2.35E-49 | -1.69E-46 |
| MS.gene05335 | MS.gene86355 | 0.802312 | 5.96E-49 | -1.69E-46 |
| MS.gene053449 | MS.gene86355 | 0.815497 | 8.97E-52 | -1.69E-46 |
| MS.gene053574 | MS.gene86355 | 0.826137 | 3.20E-54 | -1.69E-46 |
| MS.gene053758 | MS.gene86355 | 0.831991 | 1.22E-55 | -1.69E-46 |
| MS.gene053813 | MS.gene86355 | 0.807392 | 5.17E-50 | -1.69E-46 |
| MS.gene053912 | MS.gene86355 | 0.83043 | 2.95E-55 | -1.69E-46 |
| MS.gene054123 | MS.gene86355 | 0.81167 | 6.23E-51 | -1.69E-46 |
| MS.gene054183 | MS.gene86355 | 0.802956 | 4.39E-49 | -1.69E-46 |
| MS.gene054927 | MS.gene86355 | 0.801486 | 8.80E-49 | -1.69E-46 |
| MS.gene05505 | MS.gene86355 | 0.860538 | 1.93E-63 | -1.69E-46 |
| MS.gene055116 | MS.gene86355 | 0.84857 | 5.63E-60 | -1.69E-46 |
| MS.gene055277 | MS.gene86355 | 0.808949 | 2.41E-50 | -1.69E-46 |
| MS.gene055369 | MS.gene86355 | 0.835409 | 1.71E-56 | -1.69E-46 |
| MS.gene055412 | MS.gene86355 | 0.846337 | 2.31E-59 | -1.69E-46 |
| MS.gene05553 | MS.gene86355 | 0.815567 | 8.65E-52 | -1.69E-46 |
| MS.gene055741 | MS.gene86355 | 0.822647 | 2.12E-53 | -1.69E-46 |
| MS.gene055744 | MS.gene86355 | 0.8238 | 1.14E-53 | -1.69E-46 |
| MS.gene055909 | MS.gene86355 | 0.840156 | 1.03E-57 | -1.69E-46 |
| MS.gene055911 | MS.gene86355 | 0.841151 | 5.65E-58 | -1.69E-46 |
| MS.gene05592 | MS.gene86355 | 0.80873 | 2.68E-50 | -1.69E-46 |
| MS.gene055941 | MS.gene86355 | 0.800278 | 1.55E-48 | -1.69E-46 |
| MS.gene056166 | MS.gene86355 | 0.803606 | 3.22E-49 | -1.69E-46 |
| MS.gene056191 | MS.gene86355 | 0.805318 | 1.41E-49 | -1.69E-46 |
| MS.gene056407 | MS.gene86355 | 0.837919 | 3.91E-57 | -1.69E-46 |
| MS.gene056410 | MS.gene86355 | 0.805599 | 1.24E-49 | -1.69E-46 |
| MS.gene056422 | MS.gene86355 | 0.817223 | 3.69E-52 | -1.69E-46 |
| MS.gene056511 | MS.gene86355 | 0.863957 | 1.72E-64 | -1.69E-46 |
| MS.gene056514 | MS.gene86355 | 0.822052 | 2.91E-53 | -1.69E-46 |
| MS.gene056659 | MS.gene86355 | 0.840321 | 9.33E-58 | -1.69E-46 |
| MS.gene056902 | MS.gene86355 | 0.8023 | 5.99E-49 | -1.69E-46 |
| MS.gene057011 | MS.gene86355 | 0.810882 | 9.24E-51 | -1.69E-46 |
| MS.gene05702 | MS.gene86355 | 0.804078 | 2.57E-49 | -1.69E-46 |
| MS.gene057076 | MS.gene86355 | 0.813761 | 2.17E-51 | -1.69E-46 |
| MS.gene057124 | MS.gene86355 | 0.862246 | 5.80E-64 | -1.69E-46 |
| MS.gene057146 | MS.gene86355 | 0.827716 | 1.34E-54 | -1.69E-46 |
| MS.gene057331 | MS.gene86355 | 0.819101 | 1.39E-52 | -1.69E-46 |
| MS.gene057416 | MS.gene86355 | 0.83052 | 2.80E-55 | -1.69E-46 |
| MS.gene057476 | MS.gene86355 | 0.80238 | 5.77E-49 | -1.69E-46 |
| MS.gene057734 | MS.gene86355 | 0.81835 | 2.05E-52 | -1.69E-46 |
| MS.gene057749 | MS.gene86355 | 0.811643 | 6.32E-51 | -1.69E-46 |
| MS.gene057823 | MS.gene86355 | 0.815881 | 7.37E-52 | -1.69E-46 |
| MS.gene058007 | MS.gene86355 | 0.853431 | 2.40E-61 | -1.69E-46 |
| MS.gene058120 | MS.gene86355 | 0.809098 | 2.24E-50 | -1.69E-46 |
| MS.gene058130 | MS.gene86355 | 0.818171 | 2.25E-52 | -1.69E-46 |
| MS.gene058376 | MS.gene86355 | 0.822861 | 1.89E-53 | -1.69E-46 |
| MS.gene058444 | MS.gene86355 | 0.802704 | 4.94E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene86355 | 0.825009 | 5.92E-54 | -1.69E-46 |
| MS.gene058700 | MS.gene86355 | 0.881605 | 2.09E-70 | -1.69E-46 |
| MS.gene05886 | MS.gene86355 | 0.822631 | 2.14E-53 | -1.69E-46 |
| MS.gene058928 | MS.gene86355 | 0.810624 | 1.05E-50 | -1.69E-46 |
| MS.gene058948 | MS.gene86355 | 0.839578 | 1.46E-57 | -1.69E-46 |
| MS.gene05907 | MS.gene86355 | 0.822984 | 1.77E-53 | -1.69E-46 |
| MS.gene059082 | MS.gene86355 | 0.809761 | 1.61E-50 | -1.69E-46 |
| MS.gene059305 | MS.gene86355 | 0.803474 | 3.43E-49 | -1.69E-46 |
| MS.gene059366 | MS.gene86355 | 0.819778 | 9.71E-53 | -1.69E-46 |
| MS.gene059420 | MS.gene86355 | 0.8497 | 2.73E-60 | -1.69E-46 |
| MS.gene059455 | MS.gene86355 | 0.80138 | 9.25E-49 | -1.69E-46 |
| MS.gene059462 | MS.gene86355 | 0.81051 | 1.11E-50 | -1.69E-46 |
| MS.gene059536 | MS.gene86355 | 0.816492 | 5.38E-52 | -1.69E-46 |
| MS.gene05959 | MS.gene86355 | 0.805082 | 1.58E-49 | -1.69E-46 |
| MS.gene059674 | MS.gene86355 | 0.815951 | 7.11E-52 | -1.69E-46 |
| MS.gene059676 | MS.gene86355 | 0.832715 | 8.07E-56 | -1.69E-46 |
| MS.gene059688 | MS.gene86355 | 0.873165 | 1.82E-67 | -1.69E-46 |
| MS.gene059692 | MS.gene86355 | 0.852845 | 3.53E-61 | -1.69E-46 |
| MS.gene059695 | MS.gene86355 | 0.854822 | 9.53E-62 | -1.69E-46 |
| MS.gene059711 | MS.gene86355 | 0.84725 | 1.30E-59 | -1.69E-46 |
| MS.gene059807 | MS.gene86355 | 0.813656 | 2.29E-51 | -1.69E-46 |
| MS.gene060372 | MS.gene86355 | 0.819482 | 1.13E-52 | -1.69E-46 |
| MS.gene060403 | MS.gene86355 | 0.829488 | 5.01E-55 | -1.69E-46 |
| MS.gene060804 | MS.gene86355 | 0.826375 | 2.81E-54 | -1.69E-46 |
| MS.gene060818 | MS.gene86355 | 0.800961 | 1.13E-48 | -1.69E-46 |
| MS.gene060835 | MS.gene86355 | 0.828438 | 8.99E-55 | -1.69E-46 |
| MS.gene060837 | MS.gene86355 | 0.871485 | 6.59E-67 | -1.69E-46 |
| MS.gene06092 | MS.gene86355 | 0.810758 | 9.83E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene86355 | 0.803782 | 2.96E-49 | -1.69E-46 |
| MS.gene061051 | MS.gene86355 | -0.822801 | 1.95E-53 | -1.69E-46 |
| MS.gene061154 | MS.gene86355 | 0.852184 | 5.45E-61 | -1.69E-46 |
| MS.gene061200 | MS.gene86355 | 0.801759 | 7.74E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene89058 | MS.gene86355 | PPI |
| MS.gene86355 | MS.gene36240 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86355.t1 | MTR_2g103280 | 94.946 | 277 | 14 | 0 | 1 | 277 | 1 | 277 | 0.0 | 536 |
| MS.gene86355.t1 | MTR_5g083520 | 33.065 | 248 | 159 | 5 | 30 | 273 | 35 | 279 | 4.55e-35 | 127 |
| MS.gene86355.t1 | MTR_3g071960 | 35.096 | 208 | 119 | 4 | 78 | 273 | 71 | 274 | 4.49e-31 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86355.t1 | AT3G15690 | 48.043 | 281 | 123 | 6 | 1 | 276 | 1 | 263 | 2.51e-80 | 243 |
| MS.gene86355.t1 | AT1G52670 | 45.487 | 277 | 139 | 5 | 6 | 276 | 4 | 274 | 8.72e-73 | 224 |
| MS.gene86355.t1 | AT3G15690 | 44.574 | 258 | 120 | 6 | 1 | 253 | 1 | 240 | 1.18e-63 | 200 |
| MS.gene86355.t1 | AT3G15690 | 44.048 | 252 | 120 | 5 | 7 | 253 | 7 | 242 | 5.99e-62 | 196 |
| MS.gene86355.t1 | AT3G56130 | 34.956 | 226 | 126 | 4 | 63 | 272 | 58 | 278 | 4.44e-35 | 127 |
| MS.gene86355.t1 | AT3G56130 | 36.458 | 192 | 102 | 3 | 96 | 272 | 16 | 202 | 2.14e-33 | 121 |
| MS.gene86355.t1 | AT3G56130 | 56.383 | 94 | 41 | 0 | 179 | 272 | 98 | 191 | 6.23e-31 | 114 |
| MS.gene86355.t1 | AT3G56130 | 31.884 | 207 | 120 | 4 | 63 | 253 | 58 | 259 | 8.37e-25 | 100 |
| MS.gene86355.t1 | AT3G56130 | 29.319 | 191 | 114 | 4 | 63 | 237 | 58 | 243 | 6.56e-17 | 78.6 |
Find 63 sgRNAs with CRISPR-Local
Find 326 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCACTAACATCATTAAAAT+TGG | 0.116441 | 2.3:+1704022 | None:intergenic |
| GCGGGTGTATTTATACTTAC+AGG | 0.253090 | 2.3:+1703568 | None:intergenic |
| ATATTGAAGCTTCTTTATTC+CGG | 0.272327 | 2.3:+1702758 | None:intergenic |
| GAAACTGATCCATTTGGTTT+AGG | 0.301102 | 2.3:+1703538 | None:intergenic |
| TCTGAAGAGATTAAATCTTC+TGG | 0.320860 | 2.3:-1704065 | MS.gene86355:CDS |
| TATTGAAGCTTCTTTATTCC+GGG | 0.339110 | 2.3:+1702759 | None:intergenic |
| CAGAAGATCTCGGACGATAA+AGG | 0.350185 | 2.3:-1703331 | MS.gene86355:CDS |
| GTGACAGATCCTGTTGGTTA+TGG | 0.357339 | 2.3:-1702813 | MS.gene86355:intron |
| AAATGTATCACAGGCAGCTT+AGG | 0.364199 | 2.3:-1707015 | MS.gene86355:intron |
| GCAATATTGCCGTCATTTCC+CGG | 0.364958 | 2.3:-1702777 | MS.gene86355:CDS |
| GATGATAAACAGCTGTTTCA+AGG | 0.373445 | 2.3:-1704100 | MS.gene86355:intron |
| AATGATATATATCAGCTTGA+TGG | 0.374079 | 2.3:-1703658 | MS.gene86355:intron |
| TCTTTCTAGTCTGACGTGTC+CGG | 0.391008 | 2.3:-1702953 | MS.gene86355:intron |
| CTTTCTAGTCTGACGTGTCC+GGG | 0.391958 | 2.3:-1702952 | MS.gene86355:intron |
| AGAAGATCTCGGACGATAAA+GGG | 0.403087 | 2.3:-1703330 | MS.gene86355:CDS |
| AATGTAGAAACTGATCCATT+TGG | 0.403959 | 2.3:+1703532 | None:intergenic |
| TTTAATACACAAACCTCAAC+TGG | 0.428231 | 2.3:+1703075 | None:intergenic |
| TTATGTGAGACGGCATCAAT+TGG | 0.434687 | 2.3:-1703818 | MS.gene86355:CDS |
| GCACTAACATCATTAAAATT+GGG | 0.455388 | 2.3:+1704023 | None:intergenic |
| TCTGCCGATTGGTCATTAGA+TGG | 0.468240 | 2.3:+1706844 | None:intergenic |
| CTTACAGGAGCAGGAATTGA+AGG | 0.477237 | 2.3:+1703583 | None:intergenic |
| AACTCCATCTAATGACCAAT+CGG | 0.479109 | 2.3:-1706848 | MS.gene86355:CDS |
| GTACTAGCAGTTGGATCAGT+AGG | 0.483887 | 2.3:-1706924 | MS.gene86355:CDS |
| TTCTTTATTCCGGGAAATGA+CGG | 0.488727 | 2.3:+1702768 | None:intergenic |
| TGGTGGGCAGCTACCAGTTG+AGG | 0.498148 | 2.3:-1703088 | MS.gene86355:intron |
| TTTGGTTTAGGTGCTTCTGC+GGG | 0.511687 | 2.3:+1703550 | None:intergenic |
| GCAGAAGCACCTAAACCAAA+TGG | 0.516816 | 2.3:-1703547 | MS.gene86355:CDS |
| TACATTGAATCTCTGCCGAT+TGG | 0.516846 | 2.3:+1706833 | None:intergenic |
| CCTTCTTCATTGTCTATCGA+GGG | 0.519793 | 2.3:-1703481 | MS.gene86355:CDS |
| CGCTCCTCCTTCATGTAATG+AGG | 0.520806 | 2.3:-1703301 | MS.gene86355:intron |
| AGTGCATCACCATAACCAAC+AGG | 0.523841 | 2.3:+1702804 | None:intergenic |
| GTCACTGCAGTACACTAGAT+TGG | 0.524258 | 2.3:-1706899 | MS.gene86355:CDS |
| ATAGACAATGAAGAAGGTAC+TGG | 0.526221 | 2.3:+1703487 | None:intergenic |
| TAGAATCTTGATGACCTCCC+CGG | 0.535783 | 2.3:+1702934 | None:intergenic |
| AAACTATTGAGTTTGCACTT+TGG | 0.540051 | 2.3:-1706979 | MS.gene86355:CDS |
| ACCTTCTTCATTGTCTATCG+AGG | 0.541849 | 2.3:-1703482 | MS.gene86355:CDS |
| GTATTTATACTTACAGGAGC+AGG | 0.544888 | 2.3:+1703574 | None:intergenic |
| ATTTGGTTTAGGTGCTTCTG+CGG | 0.545135 | 2.3:+1703549 | None:intergenic |
| AATGTATCACAGGCAGCTTA+GGG | 0.548653 | 2.3:-1707014 | MS.gene86355:intron |
| AGTTTCTACATTGACAACAT+TGG | 0.552501 | 2.3:-1703521 | MS.gene86355:CDS |
| CCCTCGATAGACAATGAAGA+AGG | 0.562111 | 2.3:+1703481 | None:intergenic |
| TGTTACATTGAACAGCTTGG+TGG | 0.563421 | 2.3:-1703105 | MS.gene86355:CDS |
| ATTTCACCTGCGTGTAGTGA+GGG | 0.566652 | 2.3:-1703635 | MS.gene86355:CDS |
| AATTGTACCTCATTACATGA+AGG | 0.567951 | 2.3:+1703294 | None:intergenic |
| GTTACATTGAACAGCTTGGT+GGG | 0.584700 | 2.3:-1703104 | MS.gene86355:CDS |
| ATCAAGATTCTAAGAGAGGA+TGG | 0.587641 | 2.3:-1702923 | MS.gene86355:CDS |
| TTGGCATCTTCAGAAGATCT+CGG | 0.594306 | 2.3:-1703341 | MS.gene86355:CDS |
| AAAAGCTGCAGATGAAGGGT+TGG | 0.594334 | 2.3:-1703449 | MS.gene86355:CDS |
| ATTTGTTACATTGAACAGCT+TGG | 0.595450 | 2.3:-1703108 | MS.gene86355:CDS |
| GATTTCACCTGCGTGTAGTG+AGG | 0.596484 | 2.3:-1703636 | MS.gene86355:CDS |
| GGTGATAATTCATTCTCCAA+CGG | 0.599409 | 2.3:-1703428 | MS.gene86355:intron |
| TTTCTAGTCTGACGTGTCCG+GGG | 0.599859 | 2.3:-1702951 | MS.gene86355:intron |
| ACAGCTGTTTCAAGGTCAGA+AGG | 0.607336 | 2.3:-1704092 | MS.gene86355:intron |
| GGTCATCAAGATTCTAAGAG+AGG | 0.618953 | 2.3:-1702927 | MS.gene86355:CDS |
| CTAGTCTGACGTGTCCGGGG+AGG | 0.637170 | 2.3:-1702948 | MS.gene86355:intron |
| AGAAGGTACTGGTTTCGAGA+TGG | 0.639561 | 2.3:+1703498 | None:intergenic |
| GCTCACTAACTTATGTGAGA+CGG | 0.640399 | 2.3:-1703828 | MS.gene86355:CDS |
| TGTACCTCATTACATGAAGG+AGG | 0.650394 | 2.3:+1703297 | None:intergenic |
| GTGTTTGTGACAGATCCTGT+TGG | 0.655563 | 2.3:-1702819 | MS.gene86355:intron |
| GCTGTTTCAAGGTCAGAAGG+TGG | 0.666496 | 2.3:-1704089 | MS.gene86355:CDS |
| ACAGGAGCAGGAATTGAAGG+AGG | 0.687530 | 2.3:+1703586 | None:intergenic |
| TCAAATCCCTCACTACACGC+AGG | 0.704009 | 2.3:+1703629 | None:intergenic |
| AAGATTCTAAGAGAGGATGG+CGG | 0.764705 | 2.3:-1702920 | MS.gene86355:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTGTTTTATATTACTTT+TGG | - | chr2.3:1702990-1703009 | MS.gene86355:intron | 10.0% |
| !! | AAACAATAAAAATCATTCAA+AGG | + | chr2.3:1703245-1703264 | None:intergenic | 15.0% |
| !! | CAAAAACTTATTTAATCTTT+GGG | - | chr2.3:1702941-1702960 | MS.gene86355:CDS | 15.0% |
| !! | TCTAAAAAATAAAAATTGAC+CGG | - | chr2.3:1704374-1704393 | MS.gene86355:intron | 15.0% |
| !! | TTATTTATAAAGCTTATGTT+AGG | - | chr2.3:1704507-1704526 | MS.gene86355:intron | 15.0% |
| !! | TTTAAACAGATAAAAAATAG+AGG | + | chr2.3:1707436-1707455 | None:intergenic | 15.0% |
| !!! | AACATAAGCTTTATAAATAA+TGG | + | chr2.3:1704507-1704526 | None:intergenic | 15.0% |
| !!! | TTATATTACTTTTGGATAAT+GGG | - | chr2.3:1702998-1703017 | MS.gene86355:intron | 15.0% |
| !!! | TTGTTTTCAATTAAATTTTC+CGG | + | chr2.3:1705570-1705589 | None:intergenic | 15.0% |
| !!! | TTTATATTACTTTTGGATAA+TGG | - | chr2.3:1702997-1703016 | MS.gene86355:intron | 15.0% |
| !!! | TTTGAATGATTTTTATTGTT+TGG | - | chr2.3:1703244-1703263 | MS.gene86355:intron | 15.0% |
| !!! | TTTTTTTATGCAAAATACAT+TGG | - | chr2.3:1703990-1704009 | MS.gene86355:intron | 15.0% |
| !! | AATTGATATTAACTTTCTTC+AGG | + | chr2.3:1704095-1704114 | None:intergenic | 20.0% |
| !! | AGCTTATTTGATTACATAAT+GGG | - | chr2.3:1703060-1703079 | MS.gene86355:intron | 20.0% |
| !! | ATAGAGATTAATGTGTATTT+AGG | + | chr2.3:1704800-1704819 | None:intergenic | 20.0% |
| !! | ATTGATATTAACTTTCTTCA+GGG | + | chr2.3:1704094-1704113 | None:intergenic | 20.0% |
| !! | CAAGTAAAAAAAATTAACGA+AGG | - | chr2.3:1704571-1704590 | MS.gene86355:intron | 20.0% |
| !! | CCAAAAACTTATTTAATCTT+TGG | - | chr2.3:1702940-1702959 | MS.gene86355:CDS | 20.0% |
| !! | GAGGTTAAAAAAAATATACT+AGG | + | chr2.3:1702808-1702827 | None:intergenic | 20.0% |
| !! | GATAAAAAATAAGAAAGAGT+AGG | - | chr2.3:1705612-1705631 | MS.gene86355:intron | 20.0% |
| !! | GGTTTATTTCATTAGATAAT+GGG | - | chr2.3:1703081-1703100 | MS.gene86355:intron | 20.0% |
| !! | GTAATAGTAACTATAGTAAA+TGG | + | chr2.3:1707312-1707331 | None:intergenic | 20.0% |
| !! | TACTATAGTTACTATTACAA+TGG | - | chr2.3:1707314-1707333 | MS.gene86355:intron | 20.0% |
| !! | TATAATATGATCTATAGTGT+AGG | + | chr2.3:1703747-1703766 | None:intergenic | 20.0% |
| !! | TATGTAATTAAATGTATCAC+AGG | - | chr2.3:1703295-1703314 | MS.gene86355:intron | 20.0% |
| !! | TGAAAATATGGTAATTGTTT+AGG | - | chr2.3:1703898-1703917 | MS.gene86355:intron | 20.0% |
| !! | TTGTGATCAATAAAAATTCA+GGG | + | chr2.3:1704554-1704573 | None:intergenic | 20.0% |
| !!! | AAAACATTGATATTGTTTTG+AGG | + | chr2.3:1702827-1702846 | None:intergenic | 20.0% |
| !!! | AACATAATGACATTTTTATG+TGG | - | chr2.3:1707454-1707473 | MS.gene86355:intron | 20.0% |
| !!! | ATTCATGTAATTTTCTACAA+TGG | + | chr2.3:1704217-1704236 | None:intergenic | 20.0% |
| !!! | CAAAGAGATTTAAGTTATAT+AGG | + | chr2.3:1706457-1706476 | None:intergenic | 20.0% |
| !!! | CAATTACCATATTTTCATTT+TGG | + | chr2.3:1703895-1703914 | None:intergenic | 20.0% |
| !!! | CCAAAGATTAAATAAGTTTT+TGG | + | chr2.3:1702943-1702962 | None:intergenic | 20.0% |
| !!! | GTACAGATTTGTATTATTTT+GGG | + | chr2.3:1705696-1705715 | None:intergenic | 20.0% |
| !!! | TTTTAGAGTAGATTATTGAA+AGG | + | chr2.3:1706948-1706967 | None:intergenic | 20.0% |
| ! | AAAGGTTTATTATAGGAAGA+AGG | + | chr2.3:1704835-1704854 | None:intergenic | 25.0% |
| ! | AATGATATATATCAGCTTGA+TGG | - | chr2.3:1706661-1706680 | MS.gene86355:intron | 25.0% |
| ! | AATTATCATGTATAGATAGG+AGG | + | chr2.3:1705743-1705762 | None:intergenic | 25.0% |
| ! | AATTTAACAGTTTCAGTTCT+CGG | + | chr2.3:1706108-1706127 | None:intergenic | 25.0% |
| ! | AGCTGTTTATCATCAAAAAA+AGG | + | chr2.3:1706213-1706232 | None:intergenic | 25.0% |
| ! | AGTAATATACTCGAATACAT+TGG | - | chr2.3:1703954-1703973 | MS.gene86355:intron | 25.0% |
| ! | ATATATATCATTTGGAGGTT+GGG | + | chr2.3:1706653-1706672 | None:intergenic | 25.0% |
| ! | ATATCAACTTTCAATGATTG+AGG | + | chr2.3:1704182-1704201 | None:intergenic | 25.0% |
| ! | ATATTGAAGCTTCTTTATTC+CGG | + | chr2.3:1707564-1707583 | None:intergenic | 25.0% |
| ! | ATGGTAATTGTTTAGGAATT+TGG | - | chr2.3:1703905-1703924 | MS.gene86355:intron | 25.0% |
| ! | CTTGTGATCAATAAAAATTC+AGG | + | chr2.3:1704555-1704574 | None:intergenic | 25.0% |
| ! | GAAATTGAGTAATAGAACAA+TGG | + | chr2.3:1703568-1703587 | None:intergenic | 25.0% |
| ! | GAATAGACTTAACATTCATT+TGG | - | chr2.3:1704066-1704085 | MS.gene86355:CDS | 25.0% |
| ! | GAGCTTATTTGATTACATAA+TGG | - | chr2.3:1703059-1703078 | MS.gene86355:intron | 25.0% |
| ! | GATATGTATATATCATAGTC+TGG | - | chr2.3:1706173-1706192 | MS.gene86355:intron | 25.0% |
| ! | GCACTAACATCATTAAAATT+GGG | + | chr2.3:1706299-1706318 | None:intergenic | 25.0% |
| ! | GGGTTTATTTCATTAGATAA+TGG | - | chr2.3:1703080-1703099 | MS.gene86355:intron | 25.0% |
| ! | TAAACGGTATTTGTGTATTT+AGG | + | chr2.3:1704772-1704791 | None:intergenic | 25.0% |
| ! | TAAAGCAATTGAAATTTGTG+TGG | - | chr2.3:1706134-1706153 | MS.gene86355:intron | 25.0% |
| ! | TAGTAATGTAAATTACACTC+CGG | + | chr2.3:1704396-1704415 | None:intergenic | 25.0% |
| ! | TATAACTTAAATCTCTTTGC+AGG | - | chr2.3:1706458-1706477 | MS.gene86355:intron | 25.0% |
| ! | TATAGTATTGTTCATGCAAA+TGG | - | chr2.3:1703194-1703213 | MS.gene86355:intron | 25.0% |
| ! | TATGAACATGAACAGATATT+TGG | - | chr2.3:1704970-1704989 | MS.gene86355:intron | 25.0% |
| ! | TCAAGCTGATATATATCATT+TGG | + | chr2.3:1706661-1706680 | None:intergenic | 25.0% |
| ! | TCGAATTATCATGTATAGAT+AGG | + | chr2.3:1705746-1705765 | None:intergenic | 25.0% |
| ! | TGCACTAACATCATTAAAAT+TGG | + | chr2.3:1706300-1706319 | None:intergenic | 25.0% |
| ! | TGTGATCAATAAAAATTCAG+GGG | + | chr2.3:1704553-1704572 | None:intergenic | 25.0% |
| !! | AAGCTAGTCTATATAAACTT+GGG | - | chr2.3:1703037-1703056 | MS.gene86355:intron | 25.0% |
| !! | ACATAAATAACCATCCTTTT+TGG | + | chr2.3:1703280-1703299 | None:intergenic | 25.0% |
| !! | ATAAATAACCATCCTTTTTG+GGG | + | chr2.3:1703278-1703297 | None:intergenic | 25.0% |
| !! | ATGTAATTTTCTACAATGGA+GGG | + | chr2.3:1704213-1704232 | None:intergenic | 25.0% |
| !! | ATTGTTGTAACCTTTTTAGA+AGG | + | chr2.3:1704153-1704172 | None:intergenic | 25.0% |
| !! | CATAAATAACCATCCTTTTT+GGG | + | chr2.3:1703279-1703298 | None:intergenic | 25.0% |
| !! | GATTTTTATTGTTTGGACTT+TGG | - | chr2.3:1703251-1703270 | MS.gene86355:intron | 25.0% |
| !! | GGTACAGATTTGTATTATTT+TGG | + | chr2.3:1705697-1705716 | None:intergenic | 25.0% |
| !! | GTGTATTTAGGTCTTTTAAA+CGG | + | chr2.3:1704788-1704807 | None:intergenic | 25.0% |
| !! | TTAAGTCTATTCTTTTTACC+TGG | + | chr2.3:1704058-1704077 | None:intergenic | 25.0% |
| !! | TTTAAAATCAAACTGCTCAT+AGG | + | chr2.3:1705018-1705037 | None:intergenic | 25.0% |
| !!! | AACTCTGTTAGTTTTTATCA+AGG | - | chr2.3:1705957-1705976 | MS.gene86355:intron | 25.0% |
| !!! | AAGTCATTTTTCATGATTGA+GGG | - | chr2.3:1704277-1704296 | MS.gene86355:intron | 25.0% |
| !!! | GACAAAATCCTTTTTAGAAA+AGG | - | chr2.3:1705155-1705174 | MS.gene86355:intron | 25.0% |
| !!! | GATGGTAGAAATTTTTCAAT+AGG | + | chr2.3:1703597-1703616 | None:intergenic | 25.0% |
| !!! | GCTAGGGAATTTTTAATTAA+CGG | + | chr2.3:1705777-1705796 | None:intergenic | 25.0% |
| !!! | GTTTTGAAAATCAAACAATG+TGG | + | chr2.3:1705940-1705959 | None:intergenic | 25.0% |
| !!! | TTTGTTTTATTGATGCTGAA+TGG | + | chr2.3:1706371-1706390 | None:intergenic | 25.0% |
| AAACTATTGAGTTTGCACTT+TGG | - | chr2.3:1703340-1703359 | MS.gene86355:CDS | 30.0% | |
| AAGAAAACCAAGATCCAAAT+TGG | + | chr2.3:1705310-1705329 | None:intergenic | 30.0% | |
| AATGAGTTAGAGAAAGGATA+TGG | + | chr2.3:1705718-1705737 | None:intergenic | 30.0% | |
| AATGCATGTGAAATCATTGA+TGG | + | chr2.3:1703615-1703634 | None:intergenic | 30.0% | |
| AATGTAGAAACTGATCCATT+TGG | + | chr2.3:1706790-1706809 | None:intergenic | 30.0% | |
| AATTGTACCTCATTACATGA+AGG | + | chr2.3:1707028-1707047 | None:intergenic | 30.0% | |
| AATTGTTCTGATCATATCTG+TGG | - | chr2.3:1705274-1705293 | MS.gene86355:intron | 30.0% | |
| ACAGATATGATCAGAACAAT+TGG | + | chr2.3:1705275-1705294 | None:intergenic | 30.0% | |
| AGAAAACCAAGATCCAAATT+GGG | + | chr2.3:1705309-1705328 | None:intergenic | 30.0% | |
| AGCTGATATATATCATTTGG+AGG | + | chr2.3:1706658-1706677 | None:intergenic | 30.0% | |
| AGTTTCTACATTGACAACAT+TGG | - | chr2.3:1706798-1706817 | MS.gene86355:intron | 30.0% | |
| ATGTAATGAGGTACAATTGA+AGG | - | chr2.3:1707030-1707049 | MS.gene86355:intron | 30.0% | |
| ATTGATGTCACCTATATCTT+TGG | - | chr2.3:1704330-1704349 | MS.gene86355:intron | 30.0% | |
| CAATGAAGAAGAAACAACAA+AGG | + | chr2.3:1706623-1706642 | None:intergenic | 30.0% | |
| CAGACTAGAAAGAAATTTGA+AGG | + | chr2.3:1707359-1707378 | None:intergenic | 30.0% | |
| GATATATATCATTTGGAGGT+TGG | + | chr2.3:1706654-1706673 | None:intergenic | 30.0% | |
| GCAACCTTTGTAACATTTAT+AGG | - | chr2.3:1703123-1703142 | MS.gene86355:CDS | 30.0% | |
| GTTAGTTAGGATATAGGATA+AGG | + | chr2.3:1705808-1705827 | None:intergenic | 30.0% | |
| GTTGCCTATAAATGTTACAA+AGG | + | chr2.3:1703130-1703149 | None:intergenic | 30.0% | |
| TAAGGAGTTAGTTAGGATAT+AGG | + | chr2.3:1705814-1705833 | None:intergenic | 30.0% | |
| TAGGAATTGTAAGCAAAAGA+AGG | + | chr2.3:1702789-1702808 | None:intergenic | 30.0% | |
| TATTGAAGCTTCTTTATTCC+GGG | + | chr2.3:1707563-1707582 | None:intergenic | 30.0% | |
| TCAAACCAATTGTTAGAAAC+CGG | - | chr2.3:1705548-1705567 | MS.gene86355:intron | 30.0% | |
| TCTGAAGAGATTAAATCTTC+TGG | - | chr2.3:1706254-1706273 | MS.gene86355:intron | 30.0% | |
| TGAAAATTGCTTAGCTAAAC+TGG | + | chr2.3:1704625-1704644 | None:intergenic | 30.0% | |
| TGCTTCTCTTTATAAAAGGT+TGG | - | chr2.3:1704670-1704689 | MS.gene86355:intron | 30.0% | |
| TTATTGTCCTCCAAAGATAT+AGG | + | chr2.3:1704343-1704362 | None:intergenic | 30.0% | |
| TTTAATACACAAACCTCAAC+TGG | + | chr2.3:1707247-1707266 | None:intergenic | 30.0% | |
| ! | AACACTAACCTACAAGTTTT+GGG | + | chr2.3:1705206-1705225 | None:intergenic | 30.0% |
| ! | ACCTTTTATAAAGAGAAGCA+TGG | + | chr2.3:1704670-1704689 | None:intergenic | 30.0% |
| ! | AGTTTTTATCAAGGTTCTGT+TGG | - | chr2.3:1705966-1705985 | MS.gene86355:intron | 30.0% |
| ! | ATTTGTTACATTGAACAGCT+TGG | - | chr2.3:1707211-1707230 | MS.gene86355:intron | 30.0% |
| ! | ATTTTCCGGTTTCTAACAAT+TGG | + | chr2.3:1705556-1705575 | None:intergenic | 30.0% |
| ! | CAAGCTAGTCTATATAAACT+TGG | - | chr2.3:1703036-1703055 | MS.gene86355:intron | 30.0% |
| ! | CATGTAATTTTCTACAATGG+AGG | + | chr2.3:1704214-1704233 | None:intergenic | 30.0% |
| ! | GTAGAGTTTTCACAACATTT+TGG | - | chr2.3:1703373-1703392 | MS.gene86355:intron | 30.0% |
| ! | TATCTTTGGAGGACAATAAT+AGG | - | chr2.3:1704344-1704363 | MS.gene86355:intron | 30.0% |
| ! | TGTTTAAAATAACGATCTCC+AGG | - | chr2.3:1704037-1704056 | MS.gene86355:CDS | 30.0% |
| ! | TTACTGTTAGATCTTTTTGC+AGG | + | chr2.3:1704746-1704765 | None:intergenic | 30.0% |
| !! | AGGCTCTAAAGGTTTATTAT+AGG | + | chr2.3:1704842-1704861 | None:intergenic | 30.0% |
| !! | ATATTTTCATTTTGGCACGA+GGG | + | chr2.3:1703887-1703906 | None:intergenic | 30.0% |
| !! | CCTTTTATAAAGAGAAGCAT+GGG | + | chr2.3:1704669-1704688 | None:intergenic | 30.0% |
| !! | CTGTTGGTTTATGTCAATAT+GGG | - | chr2.3:1705982-1706001 | MS.gene86355:intron | 30.0% |
| !! | GGTTGTTATTTCTGTTTAGT+TGG | + | chr2.3:1704725-1704744 | None:intergenic | 30.0% |
| !! | TATTTTGGGTGAATAGACAA+TGG | + | chr2.3:1705682-1705701 | None:intergenic | 30.0% |
| !! | TCTGTTGGTTTATGTCAATA+TGG | - | chr2.3:1705981-1706000 | MS.gene86355:intron | 30.0% |
| !!! | GAAGTCATTTTTCATGATTG+AGG | - | chr2.3:1704276-1704295 | MS.gene86355:intron | 30.0% |
| !!! | GCATTTTTTTTGTCCTACTT+CGG | - | chr2.3:1703630-1703649 | MS.gene86355:CDS | 30.0% |
| AAAGCTTATGTTAGGATCTC+TGG | - | chr2.3:1704515-1704534 | MS.gene86355:intron | 35.0% | |
| AACAAAACAGGCAACAAACA+AGG | + | chr2.3:1703858-1703877 | None:intergenic | 35.0% | |
| AACTCCATCTAATGACCAAT+CGG | - | chr2.3:1703471-1703490 | MS.gene86355:CDS | 35.0% | |
| AACTTAAATCTCTTTGCAGG+TGG | - | chr2.3:1706461-1706480 | MS.gene86355:intron | 35.0% | |
| AGTTAGGATATAGGATAAGG+AGG | + | chr2.3:1705805-1705824 | None:intergenic | 35.0% | |
| ATCATCACTAAACCCATTAG+AGG | + | chr2.3:1702969-1702988 | None:intergenic | 35.0% | |
| ATCTGTTAGGACATAGGATA+AGG | + | chr2.3:1705832-1705851 | None:intergenic | 35.0% | |
| ATGATCAGAACAATTGGAGA+GGG | + | chr2.3:1705269-1705288 | None:intergenic | 35.0% | |
| ATGATTCCCAATTTGGATCT+TGG | - | chr2.3:1705300-1705319 | MS.gene86355:intron | 35.0% | |
| ATTACGTCCATAAGTTGCAT+TGG | + | chr2.3:1705385-1705404 | None:intergenic | 35.0% | |
| CATAGGATAAGGAGTTAGTT+AGG | + | chr2.3:1705821-1705840 | None:intergenic | 35.0% | |
| CATTACATTAGCTAGCAAGA+GGG | + | chr2.3:1703811-1703830 | None:intergenic | 35.0% | |
| CCACAAGAACACATTTATCA+AGG | + | chr2.3:1705131-1705150 | None:intergenic | 35.0% | |
| CCCATGCTTCTCTTTATAAA+AGG | - | chr2.3:1704666-1704685 | MS.gene86355:intron | 35.0% | |
| CCTTGATAAATGTGTTCTTG+TGG | - | chr2.3:1705128-1705147 | MS.gene86355:intron | 35.0% | |
| CTATGTCCTAACAGATTCAT+GGG | - | chr2.3:1705836-1705855 | MS.gene86355:intron | 35.0% | |
| CTCATATGTTCATGCATTCA+TGG | - | chr2.3:1706022-1706041 | MS.gene86355:intron | 35.0% | |
| CTCGTGCCAAAATGAAAATA+TGG | - | chr2.3:1703886-1703905 | MS.gene86355:intron | 35.0% | |
| CTCTTGCTAGCTAATGTAAT+GGG | - | chr2.3:1703810-1703829 | MS.gene86355:CDS | 35.0% | |
| GAAAATCAAACAATGTGGAC+TGG | + | chr2.3:1705935-1705954 | None:intergenic | 35.0% | |
| GAAAATCAGTAAGTGTTTGC+TGG | - | chr2.3:1704884-1704903 | MS.gene86355:intron | 35.0% | |
| GAGGATAATGAGTTAGAGAA+AGG | + | chr2.3:1705724-1705743 | None:intergenic | 35.0% | |
| GATTTCTCAACATACACATG+AGG | + | chr2.3:1707120-1707139 | None:intergenic | 35.0% | |
| GGTGATAATTCATTCTCCAA+CGG | - | chr2.3:1706891-1706910 | MS.gene86355:CDS | 35.0% | |
| GTGGAAAATGATTCCCAATT+TGG | - | chr2.3:1705293-1705312 | MS.gene86355:intron | 35.0% | |
| TAAACCTGGACTTTCTTTGA+AGG | - | chr2.3:1704302-1704321 | MS.gene86355:intron | 35.0% | |
| TAAGCAAAAGAAGGAGAAGA+AGG | + | chr2.3:1702780-1702799 | None:intergenic | 35.0% | |
| TAGAAAAAGCTGCAGATGAA+GGG | - | chr2.3:1706866-1706885 | MS.gene86355:CDS | 35.0% | |
| TATGATCAGAACAATTGGAG+AGG | + | chr2.3:1705270-1705289 | None:intergenic | 35.0% | |
| TATGTCCTAACAGATTCATG+GGG | - | chr2.3:1705837-1705856 | MS.gene86355:intron | 35.0% | |
| TGTCAATATGGGATTCTATG+AGG | - | chr2.3:1705993-1706012 | MS.gene86355:intron | 35.0% | |
| TTACGTCCATAAGTTGCATT+GGG | + | chr2.3:1705384-1705403 | None:intergenic | 35.0% | |
| TTCTTTATTCCGGGAAATGA+CGG | + | chr2.3:1707554-1707573 | None:intergenic | 35.0% | |
| TTGACAGATGCAAAAAGTTG+AGG | - | chr2.3:1707177-1707196 | MS.gene86355:intron | 35.0% | |
| ! | ACCAATTTGGCCTTCTAAAA+AGG | - | chr2.3:1704140-1704159 | MS.gene86355:intron | 35.0% |
| ! | ATAGACAATGAAGAAGGTAC+TGG | + | chr2.3:1706835-1706854 | None:intergenic | 35.0% |
| ! | ATCAAGATTCTAAGAGAGGA+TGG | - | chr2.3:1707396-1707415 | MS.gene86355:intron | 35.0% |
| ! | CAACACTAACCTACAAGTTT+TGG | + | chr2.3:1705207-1705226 | None:intergenic | 35.0% |
| ! | GAAACTGATCCATTTGGTTT+AGG | + | chr2.3:1706784-1706803 | None:intergenic | 35.0% |
| ! | GATGATAAACAGCTGTTTCA+AGG | - | chr2.3:1706219-1706238 | MS.gene86355:intron | 35.0% |
| ! | GGACGGAAATGATGTATTTT+AGG | - | chr2.3:1703651-1703670 | MS.gene86355:intron | 35.0% |
| !! | AACATTTTGGTACTAGCAGT+TGG | - | chr2.3:1703386-1703405 | MS.gene86355:intron | 35.0% |
| !! | ACCTTTTTAGAAGGCCAAAT+TGG | + | chr2.3:1704144-1704163 | None:intergenic | 35.0% |
| !! | AGGCACAACCTTTTCTAAAA+AGG | + | chr2.3:1705166-1705185 | None:intergenic | 35.0% |
| !! | CATATTTTCATTTTGGCACG+AGG | + | chr2.3:1703888-1703907 | None:intergenic | 35.0% |
| !! | TATTTTCATTTTGGCACGAG+GGG | + | chr2.3:1703886-1703905 | None:intergenic | 35.0% |
| !!! | TTGTTTTAGAGTCTTACCGT+TGG | + | chr2.3:1706910-1706929 | None:intergenic | 35.0% |
| !!! | TTTTTTTGTCCTACTTCGGA+CGG | - | chr2.3:1703634-1703653 | MS.gene86355:CDS | 35.0% |
| AAATGTATCACAGGCAGCTT+AGG | - | chr2.3:1703304-1703323 | MS.gene86355:CDS | 40.0% | |
| AATCTTTGGGTGCCTCTAAT+GGG | - | chr2.3:1702954-1702973 | MS.gene86355:intron | 40.0% | |
| AATGTATCACAGGCAGCTTA+GGG | - | chr2.3:1703305-1703324 | MS.gene86355:CDS | 40.0% | |
| ACAGATGCAAAAAGTTGAGG+AGG | - | chr2.3:1707180-1707199 | MS.gene86355:intron | 40.0% | |
| ACCATAAACCACACACAGTA+TGG | + | chr2.3:1703697-1703716 | None:intergenic | 40.0% | |
| ACCTTCTTCATTGTCTATCG+AGG | - | chr2.3:1706837-1706856 | MS.gene86355:CDS | 40.0% | |
| AGAAGATCTCGGACGATAAA+GGG | - | chr2.3:1706989-1707008 | MS.gene86355:CDS | 40.0% | |
| AGATGCAAAAAGTTGAGGAG+GGG | - | chr2.3:1707182-1707201 | MS.gene86355:intron | 40.0% | |
| ATGTCCTAACAGATTCATGG+GGG | - | chr2.3:1705838-1705857 | MS.gene86355:intron | 40.0% | |
| ATTCCCTCAATCACAGAAAG+CGG | - | chr2.3:1704116-1704135 | MS.gene86355:intron | 40.0% | |
| CACCAAGAATCTTTGTTCTC+GGG | + | chr2.3:1705101-1705120 | None:intergenic | 40.0% | |
| CAGATGCAAAAAGTTGAGGA+GGG | - | chr2.3:1707181-1707200 | MS.gene86355:intron | 40.0% | |
| CCACCAAGAATCTTTGTTCT+CGG | + | chr2.3:1705102-1705121 | None:intergenic | 40.0% | |
| CCATGAATCTGTTAGGACAT+AGG | + | chr2.3:1705838-1705857 | None:intergenic | 40.0% | |
| CCATTACATTAGCTAGCAAG+AGG | + | chr2.3:1703812-1703831 | None:intergenic | 40.0% | |
| CCTATGTCCTAACAGATTCA+TGG | - | chr2.3:1705835-1705854 | MS.gene86355:intron | 40.0% | |
| CCTCTTGCTAGCTAATGTAA+TGG | - | chr2.3:1703809-1703828 | MS.gene86355:CDS | 40.0% | |
| CCTTCTTCATTGTCTATCGA+GGG | - | chr2.3:1706838-1706857 | MS.gene86355:CDS | 40.0% | |
| CTAGAAAAAGCTGCAGATGA+AGG | - | chr2.3:1706865-1706884 | MS.gene86355:CDS | 40.0% | |
| GATGAGAATCTGAAAGAGCT+AGG | + | chr2.3:1707277-1707296 | None:intergenic | 40.0% | |
| GATGTCACCTATATCTTTGG+AGG | - | chr2.3:1704333-1704352 | MS.gene86355:intron | 40.0% | |
| GCTAAGGCTGAAAAGTTCTT+TGG | + | chr2.3:1705422-1705441 | None:intergenic | 40.0% | |
| GCTCACTAACTTATGTGAGA+CGG | - | chr2.3:1706491-1706510 | MS.gene86355:intron | 40.0% | |
| GTAGAATAGCAGATCCTTAG+AGG | + | chr2.3:1705652-1705671 | None:intergenic | 40.0% | |
| GTTACATTGAACAGCTTGGT+GGG | - | chr2.3:1707215-1707234 | MS.gene86355:intron | 40.0% | |
| TAATCTTTGGGTGCCTCTAA+TGG | - | chr2.3:1702953-1702972 | MS.gene86355:intron | 40.0% | |
| TACATTGAATCTCTGCCGAT+TGG | + | chr2.3:1703489-1703508 | None:intergenic | 40.0% | |
| TCCCACTTGTGATTCGTAAA+CGG | - | chr2.3:1704241-1704260 | MS.gene86355:intron | 40.0% | |
| TCCGTTTACGAATCACAAGT+GGG | + | chr2.3:1704245-1704264 | None:intergenic | 40.0% | |
| TGAATCTCTTCCTAGAGAGA+AGG | + | chr2.3:1704862-1704881 | None:intergenic | 40.0% | |
| TGCAAACTAGTGTATGCAGT+TGG | + | chr2.3:1705873-1705892 | None:intergenic | 40.0% | |
| TGTACCTCATTACATGAAGG+AGG | + | chr2.3:1707025-1707044 | None:intergenic | 40.0% | |
| TGTTACATTGAACAGCTTGG+TGG | - | chr2.3:1707214-1707233 | MS.gene86355:intron | 40.0% | |
| TTATGTGAGACGGCATCAAT+TGG | - | chr2.3:1706501-1706520 | MS.gene86355:intron | 40.0% | |
| TTCCGTTTACGAATCACAAG+TGG | + | chr2.3:1704246-1704265 | None:intergenic | 40.0% | |
| TTGGCATCTTCAGAAGATCT+CGG | - | chr2.3:1706978-1706997 | MS.gene86355:CDS | 40.0% | |
| TTGTCCTTCAAAGAAAGTCC+AGG | + | chr2.3:1704309-1704328 | None:intergenic | 40.0% | |
| ! | AAGATTCTAAGAGAGGATGG+CGG | - | chr2.3:1707399-1707418 | MS.gene86355:intron | 40.0% |
| ! | ATTTGGTTTAGGTGCTTCTG+CGG | + | chr2.3:1706773-1706792 | None:intergenic | 40.0% |
| ! | CTCGACAATTGGTTCATCTT+CGG | - | chr2.3:1704937-1704956 | MS.gene86355:intron | 40.0% |
| ! | GGTCATCAAGATTCTAAGAG+AGG | - | chr2.3:1707392-1707411 | MS.gene86355:intron | 40.0% |
| !! | ATCTACTCTAAAACCAGAGC+AGG | - | chr2.3:1706955-1706974 | MS.gene86355:CDS | 40.0% |
| !! | ATTTTCATTTTGGCACGAGG+GGG | + | chr2.3:1703885-1703904 | None:intergenic | 40.0% |
| !! | CTTCATCTGCAGCTTTTTCT+AGG | + | chr2.3:1706867-1706886 | None:intergenic | 40.0% |
| !! | GCCTTTCCTTCTCATTTTTC+GGG | - | chr2.3:1707052-1707071 | MS.gene86355:intron | 40.0% |
| !! | GGCCTTTCCTTCTCATTTTT+CGG | - | chr2.3:1707051-1707070 | MS.gene86355:intron | 40.0% |
| !! | TAACAATTGGTTTGACCTGC+TGG | + | chr2.3:1705543-1705562 | None:intergenic | 40.0% |
| !!! | TTTCCTTCTCATTTTTCGGG+CGG | - | chr2.3:1707055-1707074 | MS.gene86355:intron | 40.0% |
| AAAAGCTGCAGATGAAGGGT+TGG | - | chr2.3:1706870-1706889 | MS.gene86355:CDS | 45.0% | |
| AACAAGGCTAGGTCCTTAGA+AGG | + | chr2.3:1703842-1703861 | None:intergenic | 45.0% | |
| AACAGGCAACAAACAAGGCT+AGG | + | chr2.3:1703853-1703872 | None:intergenic | 45.0% | |
| ACAACCTCGATCTCGACAAT+TGG | - | chr2.3:1704926-1704945 | MS.gene86355:intron | 45.0% | |
| ACAAGGCTAGGTCCTTAGAA+GGG | + | chr2.3:1703841-1703860 | None:intergenic | 45.0% | |
| ACATCATTTCCGTCCGAAGT+AGG | + | chr2.3:1703646-1703665 | None:intergenic | 45.0% | |
| ACTTTGGACCCCAAAAAGGA+TGG | - | chr2.3:1703267-1703286 | MS.gene86355:intron | 45.0% | |
| AGAGATCTCTCTCTCCTCTA+AGG | - | chr2.3:1705635-1705654 | MS.gene86355:intron | 45.0% | |
| AGCACTGTCTTCTTTCACAC+TGG | - | chr2.3:1704594-1704613 | MS.gene86355:intron | 45.0% | |
| AGTGCATCACCATAACCAAC+AGG | + | chr2.3:1707518-1707537 | None:intergenic | 45.0% | |
| ATCGAGGTTGTTATCGAGGT+CGG | + | chr2.3:1704917-1704936 | None:intergenic | 45.0% | |
| ATTTCACCTGCGTGTAGTGA+GGG | - | chr2.3:1706684-1706703 | MS.gene86355:intron | 45.0% | |
| CAGAAGATCTCGGACGATAA+AGG | - | chr2.3:1706988-1707007 | MS.gene86355:CDS | 45.0% | |
| CATGATTGAGGGACTAAACC+TGG | - | chr2.3:1704288-1704307 | MS.gene86355:intron | 45.0% | |
| CCCTCGATAGACAATGAAGA+AGG | + | chr2.3:1706841-1706860 | None:intergenic | 45.0% | |
| CCGAGAACAAAGATTCTTGG+TGG | - | chr2.3:1705099-1705118 | MS.gene86355:intron | 45.0% | |
| CCTTAGCAATCCAACCAACA+GGG | - | chr2.3:1705435-1705454 | MS.gene86355:intron | 45.0% | |
| CTGCTCATAGGAGACAATCA+TGG | + | chr2.3:1705006-1705025 | None:intergenic | 45.0% | |
| GCAATATTGCCGTCATTTCC+CGG | - | chr2.3:1707542-1707561 | MS.gene86355:intron | 45.0% | |
| GCCATACTGTGTGTGGTTTA+TGG | - | chr2.3:1703693-1703712 | MS.gene86355:intron | 45.0% | |
| GCCCGAAAAATGAGAAGGAA+AGG | + | chr2.3:1707056-1707075 | None:intergenic | 45.0% | |
| GGAGGACATGTGAGCTAAAA+GGG | + | chr2.3:1705489-1705508 | None:intergenic | 45.0% | |
| GGTGTATAGTGTACACACTC+AGG | - | chr2.3:1703714-1703733 | MS.gene86355:intron | 45.0% | |
| GTACTAGCAGTTGGATCAGT+AGG | - | chr2.3:1703395-1703414 | MS.gene86355:intron | 45.0% | |
| GTCACTGCAGTACACTAGAT+TGG | - | chr2.3:1703420-1703439 | MS.gene86355:intron | 45.0% | |
| GTGTTTGTGACAGATCCTGT+TGG | - | chr2.3:1707500-1707519 | MS.gene86355:intron | 45.0% | |
| TAAGGCCAGGGGTTAAGAAT+TGG | + | chr2.3:1703785-1703804 | None:intergenic | 45.0% | |
| TAGCTAGCAAGAGGGATGTA+AGG | + | chr2.3:1703803-1703822 | None:intergenic | 45.0% | |
| TCGACTCACCCAAAACTTGT+AGG | - | chr2.3:1705195-1705214 | MS.gene86355:intron | 45.0% | |
| TGAACCAATTGTCGAGATCG+AGG | + | chr2.3:1704933-1704952 | None:intergenic | 45.0% | |
| TGAACGCCCAATGCAACTTA+TGG | - | chr2.3:1705375-1705394 | MS.gene86355:intron | 45.0% | |
| TGCCCGAGAACAAAGATTCT+TGG | - | chr2.3:1705096-1705115 | MS.gene86355:intron | 45.0% | |
| TGTTCTCGGGCAAGAAAGTT+GGG | + | chr2.3:1705088-1705107 | None:intergenic | 45.0% | |
| TGTTGATGCCATACTGTGTG+TGG | - | chr2.3:1703686-1703705 | MS.gene86355:intron | 45.0% | |
| TTGGACTTTGGACCCCAAAA+AGG | - | chr2.3:1703263-1703282 | MS.gene86355:intron | 45.0% | |
| TTGTTACAGGGGATCGACAA+TGG | + | chr2.3:1705237-1705256 | None:intergenic | 45.0% | |
| TTGTTCTCGGGCAAGAAAGT+TGG | + | chr2.3:1705089-1705108 | None:intergenic | 45.0% | |
| TTTGGGTGAGTCGAACAAGT+TGG | + | chr2.3:1705189-1705208 | None:intergenic | 45.0% | |
| ! | ACAGCTGTTTCAAGGTCAGA+AGG | - | chr2.3:1706227-1706246 | MS.gene86355:intron | 45.0% |
| ! | ATGAGACTAGTCCAAGGGTT+TGG | + | chr2.3:1705063-1705082 | None:intergenic | 45.0% |
| ! | GTGACAGATCCTGTTGGTTA+TGG | - | chr2.3:1707506-1707525 | MS.gene86355:intron | 45.0% |
| ! | TAATGGGCACAACCCTTCTA+AGG | - | chr2.3:1703826-1703845 | MS.gene86355:CDS | 45.0% |
| ! | TAGAATCTTGATGACCTCCC+CGG | + | chr2.3:1707388-1707407 | None:intergenic | 45.0% |
| ! | TCCTAGAGAGAAGGCTCTAA+AGG | + | chr2.3:1704853-1704872 | None:intergenic | 45.0% |
| ! | TCTGCCGATTGGTCATTAGA+TGG | + | chr2.3:1703478-1703497 | None:intergenic | 45.0% |
| ! | TCTTTCTAGTCTGACGTGTC+CGG | - | chr2.3:1707366-1707385 | MS.gene86355:intron | 45.0% |
| ! | TTTGGTTTAGGTGCTTCTGC+GGG | + | chr2.3:1706772-1706791 | None:intergenic | 45.0% |
| !! | ACCTTTAGAGCCTTCTCTCT+AGG | - | chr2.3:1704849-1704868 | MS.gene86355:intron | 45.0% |
| !! | ACTCTAAAACCAGAGCAGGT+TGG | - | chr2.3:1706959-1706978 | MS.gene86355:CDS | 45.0% |
| !! | AGAAGGTACTGGTTTCGAGA+TGG | + | chr2.3:1706824-1706843 | None:intergenic | 45.0% |
| !! | GCAGAAGCACCTAAACCAAA+TGG | - | chr2.3:1706772-1706791 | MS.gene86355:intron | 45.0% |
| ACAATTGGAGAGGGAAGCAG+TGG | + | chr2.3:1705260-1705279 | None:intergenic | 50.0% | |
| AGGATAAGGAGGAGCTAGCT+AGG | + | chr2.3:1705794-1705813 | None:intergenic | 50.0% | |
| AGGGAAGCAGTGGTTGTTAC+AGG | + | chr2.3:1705250-1705269 | None:intergenic | 50.0% | |
| CACAGAAAGCGGCACCAATT+TGG | - | chr2.3:1704127-1704146 | MS.gene86355:intron | 50.0% | |
| CGAGATCGAGGTTGTTATCG+AGG | + | chr2.3:1704921-1704940 | None:intergenic | 50.0% | |
| CGAGGGGGAAGAAACAAAAC+AGG | + | chr2.3:1703870-1703889 | None:intergenic | 50.0% | |
| CGCTCCTCCTTCATGTAATG+AGG | - | chr2.3:1707018-1707037 | MS.gene86355:intron | 50.0% | |
| CGTTGTTGACACCAAACCCT+TGG | - | chr2.3:1705049-1705068 | MS.gene86355:intron | 50.0% | |
| GAAGCCCCCATGAATCTGTT+AGG | + | chr2.3:1705845-1705864 | None:intergenic | 50.0% | |
| GATTTCACCTGCGTGTAGTG+AGG | - | chr2.3:1706683-1706702 | MS.gene86355:intron | 50.0% | |
| GCATGCCAATTCTTAACCCC+TGG | - | chr2.3:1703777-1703796 | MS.gene86355:intron | 50.0% | |
| GCCTTAGCAATCCAACCAAC+AGG | - | chr2.3:1705434-1705453 | MS.gene86355:intron | 50.0% | |
| GGAAGCAGTGGTTGTTACAG+GGG | + | chr2.3:1705248-1705267 | None:intergenic | 50.0% | |
| GGATAAGGAGGAGCTAGCTA+GGG | + | chr2.3:1705793-1705812 | None:intergenic | 50.0% | |
| GGGAAGCAGTGGTTGTTACA+GGG | + | chr2.3:1705249-1705268 | None:intergenic | 50.0% | |
| GGGAGGACATGTGAGCTAAA+AGG | + | chr2.3:1705490-1705509 | None:intergenic | 50.0% | |
| GTAGCGCTGCCAGTACTTAA+CGG | + | chr2.3:1705467-1705486 | None:intergenic | 50.0% | |
| TACAGGGGATCGACAATGGA+GGG | + | chr2.3:1705233-1705252 | None:intergenic | 50.0% | |
| TAGCGCTGCCAGTACTTAAC+GGG | + | chr2.3:1705466-1705485 | None:intergenic | 50.0% | |
| TCAAATCCCTCACTACACGC+AGG | + | chr2.3:1706693-1706712 | None:intergenic | 50.0% | |
| TCATTTGGAGGTTGGGCAGA+TGG | + | chr2.3:1706646-1706665 | None:intergenic | 50.0% | |
| TGACCGCCCGAAAAATGAGA+AGG | + | chr2.3:1707061-1707080 | None:intergenic | 50.0% | |
| TTACAGGGGATCGACAATGG+AGG | + | chr2.3:1705234-1705253 | None:intergenic | 50.0% | |
| TTTGACCTGCTGGATCTTCG+AGG | + | chr2.3:1705533-1705552 | None:intergenic | 50.0% | |
| ! | AAGAGAGGATGGCGGTTAGT+TGG | - | chr2.3:1707407-1707426 | MS.gene86355:intron | 50.0% |
| ! | CCCTGTTGGTTGGATTGCTA+AGG | + | chr2.3:1705438-1705457 | None:intergenic | 50.0% |
| ! | CTTTCTAGTCTGACGTGTCC+GGG | - | chr2.3:1707367-1707386 | MS.gene86355:intron | 50.0% |
| ! | GCTGTTTCAAGGTCAGAAGG+TGG | - | chr2.3:1706230-1706249 | MS.gene86355:intron | 50.0% |
| ! | GGGTGATGAGACTAGTCCAA+GGG | + | chr2.3:1705068-1705087 | None:intergenic | 50.0% |
| ! | TGGGTGATGAGACTAGTCCA+AGG | + | chr2.3:1705069-1705088 | None:intergenic | 50.0% |
| ! | TTTCTAGTCTGACGTGTCCG+GGG | - | chr2.3:1707368-1707387 | MS.gene86355:intron | 50.0% |
| !! | GTGCCGCTTTCTGTGATTGA+GGG | + | chr2.3:1704122-1704141 | None:intergenic | 50.0% |
| ACTCTCCTCGAAGATCCAGC+AGG | - | chr2.3:1705525-1705544 | MS.gene86355:intron | 55.0% | |
| AGAGTCAGCAATGCCGGAGT+GGG | + | chr2.3:1705510-1705529 | None:intergenic | 55.0% | |
| AGCAAGAGGGATGTAAGGCC+AGG | + | chr2.3:1703798-1703817 | None:intergenic | 55.0% | |
| CAAGAGGGATGTAAGGCCAG+GGG | + | chr2.3:1703796-1703815 | None:intergenic | 55.0% | |
| CTGAAGATGCCAACCTGCTC+TGG | + | chr2.3:1706971-1706990 | None:intergenic | 55.0% | |
| CTGCCAGTACTTAACGGGAC+AGG | + | chr2.3:1705461-1705480 | None:intergenic | 55.0% | |
| GCAAGAGGGATGTAAGGCCA+GGG | + | chr2.3:1703797-1703816 | None:intergenic | 55.0% | |
| GCATTGGGCGTTCATGAGCA+CGG | + | chr2.3:1705369-1705388 | None:intergenic | 55.0% | |
| TCGAGGAGAGTCAGCAATGC+CGG | + | chr2.3:1705516-1705535 | None:intergenic | 55.0% | |
| ! | GGGTGAGTCGAACAAGTTGG+AGG | + | chr2.3:1705186-1705205 | None:intergenic | 55.0% |
| !! | GGTGCCGCTTTCTGTGATTG+AGG | + | chr2.3:1704123-1704142 | None:intergenic | 55.0% |
| CTTAACGGGACAGGCCCTGT+TGG | + | chr2.3:1705452-1705471 | None:intergenic | 60.0% | |
| GAGAGTCAGCAATGCCGGAG+TGG | + | chr2.3:1705511-1705530 | None:intergenic | 60.0% | |
| GCTCACATGTCCTCCCACTC+CGG | - | chr2.3:1705494-1705513 | MS.gene86355:intron | 60.0% | |
| GGGCCTGTCCCGTTAAGTAC+TGG | - | chr2.3:1705455-1705474 | MS.gene86355:intron | 60.0% | |
| ! | TGGTGGGCAGCTACCAGTTG+AGG | - | chr2.3:1707231-1707250 | MS.gene86355:intron | 60.0% |
| ACGGGACAGGCCCTGTTGGT+TGG | + | chr2.3:1705448-1705467 | None:intergenic | 65.0% | |
| CTAGTCTGACGTGTCCGGGG+AGG | - | chr2.3:1707371-1707390 | MS.gene86355:intron | 65.0% | |
| GTCAGCAATGCCGGAGTGGG+AGG | + | chr2.3:1705507-1705526 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 1702755 | 1707586 | 1702755 | ID=MS.gene86355 |
| chr2.3 | mRNA | 1702755 | 1707586 | 1702755 | ID=MS.gene86355.t1;Parent=MS.gene86355 |
| chr2.3 | exon | 1707571 | 1707586 | 1707571 | ID=MS.gene86355.t1.exon1;Parent=MS.gene86355.t1 |
| chr2.3 | CDS | 1707571 | 1707586 | 1707571 | ID=cds.MS.gene86355.t1;Parent=MS.gene86355.t1 |
| chr2.3 | exon | 1706836 | 1707024 | 1706836 | ID=MS.gene86355.t1.exon2;Parent=MS.gene86355.t1 |
| chr2.3 | CDS | 1706836 | 1707024 | 1706836 | ID=cds.MS.gene86355.t1;Parent=MS.gene86355.t1 |
| chr2.3 | exon | 1704031 | 1704110 | 1704031 | ID=MS.gene86355.t1.exon3;Parent=MS.gene86355.t1 |
| chr2.3 | CDS | 1704031 | 1704110 | 1704031 | ID=cds.MS.gene86355.t1;Parent=MS.gene86355.t1 |
| chr2.3 | exon | 1703802 | 1703861 | 1703802 | ID=MS.gene86355.t1.exon4;Parent=MS.gene86355.t1 |
| chr2.3 | CDS | 1703802 | 1703861 | 1703802 | ID=cds.MS.gene86355.t1;Parent=MS.gene86355.t1 |
| chr2.3 | exon | 1703429 | 1703665 | 1703429 | ID=MS.gene86355.t1.exon5;Parent=MS.gene86355.t1 |
| chr2.3 | CDS | 1703429 | 1703665 | 1703429 | ID=cds.MS.gene86355.t1;Parent=MS.gene86355.t1 |
| chr2.3 | exon | 1703302 | 1703364 | 1703302 | ID=MS.gene86355.t1.exon6;Parent=MS.gene86355.t1 |
| chr2.3 | CDS | 1703302 | 1703364 | 1703302 | ID=cds.MS.gene86355.t1;Parent=MS.gene86355.t1 |
| chr2.3 | exon | 1703089 | 1703157 | 1703089 | ID=MS.gene86355.t1.exon7;Parent=MS.gene86355.t1 |
| chr2.3 | CDS | 1703089 | 1703157 | 1703089 | ID=cds.MS.gene86355.t1;Parent=MS.gene86355.t1 |
| chr2.3 | exon | 1702921 | 1702966 | 1702921 | ID=MS.gene86355.t1.exon8;Parent=MS.gene86355.t1 |
| chr2.3 | CDS | 1702921 | 1702966 | 1702921 | ID=cds.MS.gene86355.t1;Parent=MS.gene86355.t1 |
| chr2.3 | exon | 1702755 | 1702828 | 1702755 | ID=MS.gene86355.t1.exon9;Parent=MS.gene86355.t1 |
| chr2.3 | CDS | 1702755 | 1702828 | 1702755 | ID=cds.MS.gene86355.t1;Parent=MS.gene86355.t1 |
| Gene Sequence |
| Protein sequence |
