Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91761.t1 | XP_013463538.1 | 99.5 | 210 | 1 | 0 | 1 | 210 | 1 | 210 | 1.80E-109 | 405.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91761.t1 | Q9ZRA4 | 76.4 | 208 | 48 | 1 | 3 | 209 | 1 | 208 | 9.6e-83 | 307.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91761.t1 | I3ST27 | 99.5 | 210 | 1 | 0 | 1 | 210 | 1 | 210 | 1.3e-109 | 405.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049297 | MS.gene91761 | 0.806352 | 8.58E-50 | -1.69E-46 |
| MS.gene049346 | MS.gene91761 | 0.842904 | 1.94E-58 | -1.69E-46 |
| MS.gene049351 | MS.gene91761 | 0.828823 | 7.26E-55 | -1.69E-46 |
| MS.gene049389 | MS.gene91761 | 0.800658 | 1.30E-48 | -1.69E-46 |
| MS.gene049491 | MS.gene91761 | 0.845765 | 3.31E-59 | -1.69E-46 |
| MS.gene049661 | MS.gene91761 | 0.823148 | 1.62E-53 | -1.69E-46 |
| MS.gene049662 | MS.gene91761 | 0.819132 | 1.36E-52 | -1.69E-46 |
| MS.gene049758 | MS.gene91761 | 0.863369 | 2.62E-64 | -1.69E-46 |
| MS.gene049910 | MS.gene91761 | 0.815463 | 9.13E-52 | -1.69E-46 |
| MS.gene050076 | MS.gene91761 | 0.876597 | 1.23E-68 | -1.69E-46 |
| MS.gene050099 | MS.gene91761 | 0.872923 | 2.19E-67 | -1.69E-46 |
| MS.gene050128 | MS.gene91761 | 0.803231 | 3.85E-49 | -1.69E-46 |
| MS.gene050301 | MS.gene91761 | 0.874779 | 5.17E-68 | -1.69E-46 |
| MS.gene050397 | MS.gene91761 | 0.839717 | 1.34E-57 | -1.69E-46 |
| MS.gene050404 | MS.gene91761 | 0.844913 | 5.63E-59 | -1.69E-46 |
| MS.gene050406 | MS.gene91761 | 0.860714 | 1.70E-63 | -1.69E-46 |
| MS.gene050432 | MS.gene91761 | 0.816796 | 4.60E-52 | -1.69E-46 |
| MS.gene050464 | MS.gene91761 | 0.83772 | 4.40E-57 | -1.69E-46 |
| MS.gene050529 | MS.gene91761 | 0.840843 | 6.81E-58 | -1.69E-46 |
| MS.gene050558 | MS.gene91761 | 0.802981 | 4.33E-49 | -1.69E-46 |
| MS.gene050767 | MS.gene91761 | 0.818071 | 2.37E-52 | -1.69E-46 |
| MS.gene050770 | MS.gene91761 | 0.819821 | 9.50E-53 | -1.69E-46 |
| MS.gene05101 | MS.gene91761 | 0.888688 | 4.73E-73 | -1.69E-46 |
| MS.gene051471 | MS.gene91761 | 0.889788 | 1.77E-73 | -1.69E-46 |
| MS.gene051582 | MS.gene91761 | 0.830255 | 3.25E-55 | -1.69E-46 |
| MS.gene051662 | MS.gene91761 | 0.861888 | 7.47E-64 | -1.69E-46 |
| MS.gene051663 | MS.gene91761 | 0.853454 | 2.36E-61 | -1.69E-46 |
| MS.gene052078 | MS.gene91761 | 0.880822 | 4.00E-70 | -1.69E-46 |
| MS.gene052178 | MS.gene91761 | 0.861005 | 1.39E-63 | -1.69E-46 |
| MS.gene052188 | MS.gene91761 | 0.814457 | 1.53E-51 | -1.69E-46 |
| MS.gene052290 | MS.gene91761 | 0.808282 | 3.34E-50 | -1.69E-46 |
| MS.gene052310 | MS.gene91761 | 0.862816 | 3.88E-64 | -1.69E-46 |
| MS.gene052326 | MS.gene91761 | 0.888014 | 8.59E-73 | -1.69E-46 |
| MS.gene052340 | MS.gene91761 | 0.831454 | 1.65E-55 | -1.69E-46 |
| MS.gene053557 | MS.gene91761 | 0.843705 | 1.19E-58 | -1.69E-46 |
| MS.gene053836 | MS.gene91761 | 0.893968 | 3.83E-75 | -1.69E-46 |
| MS.gene053907 | MS.gene91761 | 0.850417 | 1.72E-60 | -1.69E-46 |
| MS.gene053928 | MS.gene91761 | 0.820844 | 5.53E-53 | -1.69E-46 |
| MS.gene053971 | MS.gene91761 | 0.857467 | 1.60E-62 | -1.69E-46 |
| MS.gene054123 | MS.gene91761 | 0.824356 | 8.44E-54 | -1.69E-46 |
| MS.gene054214 | MS.gene91761 | 0.806292 | 8.83E-50 | -1.69E-46 |
| MS.gene054376 | MS.gene91761 | 0.848573 | 5.62E-60 | -1.69E-46 |
| MS.gene054473 | MS.gene91761 | 0.814394 | 1.58E-51 | -1.69E-46 |
| MS.gene05455 | MS.gene91761 | 0.842374 | 2.69E-58 | -1.69E-46 |
| MS.gene054802 | MS.gene91761 | 0.847577 | 1.06E-59 | -1.69E-46 |
| MS.gene054803 | MS.gene91761 | 0.845215 | 4.67E-59 | -1.69E-46 |
| MS.gene054804 | MS.gene91761 | 0.847633 | 1.02E-59 | -1.69E-46 |
| MS.gene054942 | MS.gene91761 | 0.814329 | 1.63E-51 | -1.69E-46 |
| MS.gene055116 | MS.gene91761 | 0.814781 | 1.29E-51 | -1.69E-46 |
| MS.gene055254 | MS.gene91761 | 0.8152 | 1.04E-51 | -1.69E-46 |
| MS.gene055277 | MS.gene91761 | 0.896161 | 4.81E-76 | -1.69E-46 |
| MS.gene055390 | MS.gene91761 | 0.856832 | 2.46E-62 | -1.69E-46 |
| MS.gene055422 | MS.gene91761 | 0.894499 | 2.33E-75 | -1.69E-46 |
| MS.gene055428 | MS.gene91761 | 0.894768 | 1.81E-75 | -1.69E-46 |
| MS.gene055604 | MS.gene91761 | 0.813534 | 2.44E-51 | -1.69E-46 |
| MS.gene055712 | MS.gene91761 | 0.841697 | 4.06E-58 | -1.69E-46 |
| MS.gene055896 | MS.gene91761 | 0.831962 | 1.24E-55 | -1.69E-46 |
| MS.gene056191 | MS.gene91761 | 0.861255 | 1.17E-63 | -1.69E-46 |
| MS.gene056407 | MS.gene91761 | 0.833361 | 5.57E-56 | -1.69E-46 |
| MS.gene056451 | MS.gene91761 | 0.860665 | 1.76E-63 | -1.69E-46 |
| MS.gene056609 | MS.gene91761 | 0.802036 | 6.79E-49 | -1.69E-46 |
| MS.gene056612 | MS.gene91761 | 0.872689 | 2.62E-67 | -1.69E-46 |
| MS.gene05702 | MS.gene91761 | 0.877254 | 7.28E-69 | -1.69E-46 |
| MS.gene057121 | MS.gene91761 | 0.856181 | 3.83E-62 | -1.69E-46 |
| MS.gene057123 | MS.gene91761 | 0.818564 | 1.84E-52 | -1.69E-46 |
| MS.gene057245 | MS.gene91761 | 0.855658 | 5.44E-62 | -1.69E-46 |
| MS.gene057295 | MS.gene91761 | 0.828639 | 8.04E-55 | -1.69E-46 |
| MS.gene05733 | MS.gene91761 | 0.847312 | 1.25E-59 | -1.69E-46 |
| MS.gene057439 | MS.gene91761 | 0.874746 | 5.31E-68 | -1.69E-46 |
| MS.gene058002 | MS.gene91761 | 0.884723 | 1.50E-71 | -1.69E-46 |
| MS.gene05811 | MS.gene91761 | 0.85468 | 1.05E-61 | -1.69E-46 |
| MS.gene058142 | MS.gene91761 | 0.814063 | 1.86E-51 | -1.69E-46 |
| MS.gene058233 | MS.gene91761 | 0.862932 | 3.57E-64 | -1.69E-46 |
| MS.gene058276 | MS.gene91761 | 0.829103 | 6.21E-55 | -1.69E-46 |
| MS.gene058293 | MS.gene91761 | 0.839468 | 1.56E-57 | -1.69E-46 |
| MS.gene058660 | MS.gene91761 | 0.878303 | 3.13E-69 | -1.69E-46 |
| MS.gene058749 | MS.gene91761 | 0.800703 | 1.27E-48 | -1.69E-46 |
| MS.gene058845 | MS.gene91761 | 0.832252 | 1.05E-55 | -1.69E-46 |
| MS.gene05907 | MS.gene91761 | 0.866179 | 3.45E-65 | -1.69E-46 |
| MS.gene059228 | MS.gene91761 | 0.844067 | 9.51E-59 | -1.69E-46 |
| MS.gene059326 | MS.gene91761 | 0.840871 | 6.70E-58 | -1.69E-46 |
| MS.gene059518 | MS.gene91761 | 0.87004 | 1.97E-66 | -1.69E-46 |
| MS.gene059597 | MS.gene91761 | 0.859367 | 4.34E-63 | -1.69E-46 |
| MS.gene059676 | MS.gene91761 | 0.820621 | 6.23E-53 | -1.69E-46 |
| MS.gene059688 | MS.gene91761 | 0.821326 | 4.29E-53 | -1.69E-46 |
| MS.gene059692 | MS.gene91761 | 0.850044 | 2.19E-60 | -1.69E-46 |
| MS.gene059695 | MS.gene91761 | 0.849986 | 2.27E-60 | -1.69E-46 |
| MS.gene05984 | MS.gene91761 | 0.848527 | 5.79E-60 | -1.69E-46 |
| MS.gene059894 | MS.gene91761 | 0.882958 | 6.73E-71 | -1.69E-46 |
| MS.gene059960 | MS.gene91761 | 0.814962 | 1.18E-51 | -1.69E-46 |
| MS.gene060005 | MS.gene91761 | 0.830401 | 3.00E-55 | -1.69E-46 |
| MS.gene06037 | MS.gene91761 | 0.866569 | 2.59E-65 | -1.69E-46 |
| MS.gene060407 | MS.gene91761 | 0.835004 | 2.16E-56 | -1.69E-46 |
| MS.gene060476 | MS.gene91761 | 0.836286 | 1.02E-56 | -1.69E-46 |
| MS.gene061049 | MS.gene91761 | 0.895343 | 1.05E-75 | -1.69E-46 |
| MS.gene061112 | MS.gene91761 | 0.843243 | 1.58E-58 | -1.69E-46 |
| MS.gene061265 | MS.gene91761 | 0.836635 | 8.34E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91761.t1 | MTR_2g041550 | 99.524 | 210 | 1 | 0 | 1 | 210 | 1 | 210 | 9.87e-151 | 417 |
| MS.gene91761.t1 | MTR_2g041570 | 84.762 | 210 | 32 | 0 | 1 | 210 | 1 | 210 | 9.22e-127 | 356 |
| MS.gene91761.t1 | MTR_2g041580 | 84.286 | 210 | 33 | 0 | 1 | 210 | 1 | 210 | 9.74e-127 | 356 |
| MS.gene91761.t1 | MTR_8g020590 | 68.269 | 208 | 65 | 1 | 4 | 210 | 1 | 208 | 1.72e-94 | 275 |
| MS.gene91761.t1 | MTR_8g020630 | 56.459 | 209 | 87 | 3 | 4 | 210 | 3 | 209 | 7.98e-79 | 235 |
| MS.gene91761.t1 | MTR_8g020650 | 57.513 | 193 | 80 | 2 | 18 | 210 | 19 | 209 | 1.26e-76 | 229 |
| MS.gene91761.t1 | MTR_8g020670 | 55.502 | 209 | 89 | 3 | 4 | 210 | 3 | 209 | 3.87e-76 | 228 |
| MS.gene91761.t1 | MTR_8g020610 | 51.675 | 209 | 97 | 2 | 4 | 210 | 1 | 207 | 4.12e-71 | 215 |
| MS.gene91761.t1 | MTR_2g044040 | 50.239 | 209 | 100 | 3 | 4 | 210 | 3 | 209 | 5.47e-67 | 205 |
| MS.gene91761.t1 | MTR_2g045100 | 52.153 | 209 | 96 | 3 | 4 | 210 | 3 | 209 | 7.34e-67 | 204 |
| MS.gene91761.t1 | MTR_3g019710 | 50.239 | 209 | 100 | 3 | 4 | 210 | 3 | 209 | 1.06e-64 | 199 |
| MS.gene91761.t1 | MTR_2g036120 | 50.962 | 208 | 98 | 3 | 4 | 209 | 3 | 208 | 1.27e-63 | 196 |
| MS.gene91761.t1 | MTR_3g019650 | 50.000 | 208 | 101 | 3 | 4 | 210 | 3 | 208 | 1.55e-63 | 196 |
| MS.gene91761.t1 | MTR_3g019680 | 50.000 | 208 | 101 | 3 | 4 | 210 | 3 | 208 | 2.59e-63 | 195 |
| MS.gene91761.t1 | MTR_8g020750 | 47.887 | 213 | 107 | 3 | 1 | 210 | 1 | 212 | 1.89e-61 | 191 |
| MS.gene91761.t1 | MTR_8g020770 | 46.948 | 213 | 109 | 3 | 1 | 210 | 1 | 212 | 1.98e-60 | 188 |
| MS.gene91761.t1 | MTR_0284s0010 | 48.325 | 209 | 104 | 3 | 4 | 210 | 3 | 209 | 7.61e-60 | 187 |
| MS.gene91761.t1 | MTR_4g010340 | 49.038 | 208 | 103 | 3 | 3 | 210 | 1 | 205 | 2.74e-59 | 185 |
| MS.gene91761.t1 | MTR_5g031460 | 46.445 | 211 | 110 | 3 | 1 | 210 | 1 | 209 | 4.54e-59 | 184 |
| MS.gene91761.t1 | MTR_7g011340 | 48.969 | 194 | 97 | 2 | 17 | 210 | 18 | 209 | 1.43e-57 | 181 |
| MS.gene91761.t1 | MTR_3g073170 | 42.791 | 215 | 113 | 5 | 1 | 210 | 1 | 210 | 4.61e-55 | 174 |
| MS.gene91761.t1 | MTR_8g020760 | 44.860 | 214 | 111 | 4 | 1 | 210 | 1 | 211 | 2.35e-54 | 172 |
| MS.gene91761.t1 | MTR_2g019780 | 42.396 | 217 | 113 | 5 | 1 | 210 | 1 | 212 | 1.70e-52 | 168 |
| MS.gene91761.t1 | MTR_3g019810 | 45.854 | 205 | 101 | 4 | 4 | 206 | 109 | 305 | 7.62e-49 | 162 |
| MS.gene91761.t1 | MTR_8g020763 | 39.674 | 184 | 110 | 1 | 27 | 210 | 8 | 190 | 3.19e-47 | 154 |
| MS.gene91761.t1 | MTR_2g030855 | 44.022 | 184 | 95 | 3 | 20 | 201 | 25 | 202 | 1.15e-42 | 143 |
| MS.gene91761.t1 | MTR_4g017050 | 41.981 | 212 | 106 | 5 | 7 | 203 | 4 | 213 | 2.67e-42 | 142 |
| MS.gene91761.t1 | MTR_5g046410 | 41.981 | 212 | 106 | 5 | 7 | 203 | 4 | 213 | 2.79e-42 | 142 |
| MS.gene91761.t1 | MTR_5g046430 | 41.981 | 212 | 106 | 5 | 7 | 203 | 4 | 213 | 2.79e-42 | 142 |
| MS.gene91761.t1 | MTR_4g017030 | 41.981 | 212 | 106 | 5 | 7 | 203 | 4 | 213 | 2.79e-42 | 142 |
| MS.gene91761.t1 | MTR_2g031270 | 46.296 | 162 | 82 | 2 | 20 | 179 | 26 | 184 | 8.62e-42 | 140 |
| MS.gene91761.t1 | MTR_6g005310 | 41.589 | 214 | 110 | 5 | 3 | 203 | 1 | 212 | 9.81e-42 | 140 |
| MS.gene91761.t1 | MTR_6g005360 | 44.920 | 187 | 95 | 4 | 23 | 203 | 28 | 212 | 1.48e-41 | 140 |
| MS.gene91761.t1 | MTR_4g017040 | 44.149 | 188 | 96 | 4 | 23 | 203 | 28 | 213 | 4.20e-41 | 139 |
| MS.gene91761.t1 | MTR_6g005340 | 41.121 | 214 | 111 | 5 | 3 | 203 | 1 | 212 | 6.42e-41 | 139 |
| MS.gene91761.t1 | MTR_1g079490 | 42.381 | 210 | 105 | 5 | 9 | 203 | 6 | 214 | 8.24e-41 | 138 |
| MS.gene91761.t1 | MTR_2g019250 | 43.617 | 188 | 97 | 4 | 23 | 203 | 28 | 213 | 1.23e-40 | 138 |
| MS.gene91761.t1 | MTR_6g005330 | 44.385 | 187 | 96 | 4 | 23 | 203 | 28 | 212 | 1.66e-40 | 137 |
| MS.gene91761.t1 | MTR_1g023770 | 41.667 | 168 | 94 | 2 | 40 | 203 | 39 | 206 | 1.27e-38 | 132 |
| MS.gene91761.t1 | MTR_1g085140 | 40.323 | 186 | 109 | 1 | 23 | 206 | 30 | 215 | 9.24e-38 | 130 |
| MS.gene91761.t1 | MTR_1g060120 | 39.378 | 193 | 109 | 2 | 21 | 206 | 30 | 221 | 1.31e-37 | 130 |
| MS.gene91761.t1 | MTR_2g030895 | 41.420 | 169 | 94 | 3 | 40 | 203 | 7 | 175 | 1.36e-37 | 129 |
| MS.gene91761.t1 | MTR_1g112200 | 36.816 | 201 | 122 | 2 | 3 | 203 | 9 | 204 | 1.79e-37 | 129 |
| MS.gene91761.t1 | MTR_2g030865 | 41.420 | 169 | 94 | 3 | 40 | 203 | 7 | 175 | 4.47e-37 | 127 |
| MS.gene91761.t1 | MTR_7g111240 | 41.398 | 186 | 104 | 2 | 23 | 206 | 26 | 208 | 9.67e-37 | 127 |
| MS.gene91761.t1 | MTR_5g036570 | 37.566 | 189 | 115 | 2 | 23 | 208 | 33 | 221 | 1.23e-36 | 127 |
| MS.gene91761.t1 | MTR_7g111240 | 40.860 | 186 | 108 | 1 | 23 | 206 | 26 | 211 | 3.65e-36 | 126 |
| MS.gene91761.t1 | MTR_1g085500 | 35.922 | 206 | 121 | 4 | 3 | 203 | 12 | 211 | 1.56e-33 | 119 |
| MS.gene91761.t1 | MTR_6g005380 | 42.945 | 163 | 86 | 3 | 14 | 171 | 19 | 179 | 2.49e-33 | 119 |
| MS.gene91761.t1 | MTR_4g027415 | 48.031 | 127 | 64 | 2 | 17 | 143 | 18 | 142 | 1.82e-32 | 114 |
| MS.gene91761.t1 | MTR_2g072560 | 44.828 | 145 | 70 | 4 | 4 | 142 | 3 | 143 | 3.11e-31 | 111 |
| MS.gene91761.t1 | MTR_2g031300 | 51.887 | 106 | 49 | 1 | 40 | 143 | 7 | 112 | 1.54e-30 | 110 |
| MS.gene91761.t1 | MTR_8g007300 | 38.806 | 134 | 81 | 1 | 37 | 170 | 48 | 180 | 6.89e-29 | 107 |
| MS.gene91761.t1 | MTR_6g005350 | 37.634 | 186 | 109 | 4 | 23 | 203 | 28 | 211 | 1.20e-28 | 107 |
| MS.gene91761.t1 | MTR_3g096330 | 35.638 | 188 | 106 | 4 | 1 | 175 | 551 | 736 | 2.76e-28 | 111 |
| MS.gene91761.t1 | MTR_3g019610 | 48.571 | 105 | 51 | 2 | 4 | 106 | 3 | 106 | 1.90e-26 | 98.6 |
| MS.gene91761.t1 | MTR_2g086630 | 32.381 | 210 | 118 | 5 | 2 | 203 | 8 | 201 | 3.97e-25 | 97.8 |
| MS.gene91761.t1 | MTR_2g086620 | 32.381 | 210 | 118 | 5 | 2 | 203 | 8 | 201 | 4.10e-25 | 97.8 |
| MS.gene91761.t1 | MTR_2g086640 | 32.536 | 209 | 119 | 5 | 2 | 203 | 7 | 200 | 1.80e-23 | 93.6 |
| MS.gene91761.t1 | MTR_4g052770 | 36.434 | 129 | 81 | 1 | 76 | 203 | 74 | 202 | 2.30e-20 | 85.1 |
| MS.gene91761.t1 | MTR_4g052780 | 35.659 | 129 | 82 | 1 | 76 | 203 | 74 | 202 | 7.05e-20 | 84.0 |
| MS.gene91761.t1 | MTR_2g096110 | 29.457 | 129 | 75 | 2 | 43 | 170 | 6 | 119 | 6.07e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91761.t1 | AT5G20630 | 74.286 | 210 | 53 | 1 | 1 | 209 | 1 | 210 | 8.54e-109 | 311 |
| MS.gene91761.t1 | AT1G72610 | 65.865 | 208 | 71 | 0 | 3 | 210 | 1 | 208 | 2.23e-90 | 264 |
| MS.gene91761.t1 | AT3G04200 | 44.503 | 191 | 100 | 3 | 23 | 207 | 33 | 223 | 4.01e-42 | 142 |
| MS.gene91761.t1 | AT5G39160 | 43.684 | 190 | 99 | 3 | 23 | 207 | 30 | 216 | 8.92e-42 | 141 |
| MS.gene91761.t1 | AT5G39190 | 43.455 | 191 | 102 | 3 | 23 | 207 | 30 | 220 | 9.11e-41 | 138 |
| MS.gene91761.t1 | AT5G39160 | 43.455 | 191 | 102 | 3 | 23 | 207 | 30 | 220 | 1.21e-40 | 138 |
| MS.gene91761.t1 | AT3G62020 | 38.537 | 205 | 116 | 3 | 9 | 203 | 8 | 212 | 1.82e-40 | 137 |
| MS.gene91761.t1 | AT5G39110 | 44.149 | 188 | 98 | 3 | 23 | 203 | 30 | 217 | 2.02e-40 | 137 |
| MS.gene91761.t1 | AT5G39130 | 43.455 | 191 | 102 | 3 | 23 | 207 | 30 | 220 | 2.33e-40 | 137 |
| MS.gene91761.t1 | AT1G02335 | 36.493 | 211 | 130 | 2 | 1 | 207 | 6 | 216 | 7.42e-40 | 136 |
| MS.gene91761.t1 | AT3G05950 | 40.654 | 214 | 116 | 4 | 1 | 203 | 5 | 218 | 1.27e-39 | 135 |
| MS.gene91761.t1 | AT5G61750 | 41.436 | 181 | 90 | 3 | 1 | 171 | 1 | 175 | 5.58e-39 | 133 |
| MS.gene91761.t1 | AT1G18980 | 39.409 | 203 | 119 | 2 | 3 | 203 | 15 | 215 | 2.45e-38 | 132 |
| MS.gene91761.t1 | AT1G09560 | 46.951 | 164 | 83 | 2 | 23 | 184 | 30 | 191 | 3.52e-38 | 132 |
| MS.gene91761.t1 | AT5G38960 | 43.878 | 196 | 95 | 6 | 23 | 207 | 32 | 223 | 3.91e-38 | 132 |
| MS.gene91761.t1 | AT5G39120 | 40.092 | 217 | 115 | 5 | 3 | 204 | 1 | 217 | 5.07e-38 | 131 |
| MS.gene91761.t1 | AT1G18970 | 40.102 | 197 | 114 | 2 | 9 | 203 | 21 | 215 | 1.72e-37 | 130 |
| MS.gene91761.t1 | AT3G62020 | 40.000 | 170 | 99 | 2 | 37 | 203 | 14 | 183 | 1.73e-37 | 129 |
| MS.gene91761.t1 | AT5G26700 | 36.816 | 201 | 125 | 2 | 3 | 203 | 8 | 206 | 1.83e-37 | 129 |
| MS.gene91761.t1 | AT5G39150 | 39.631 | 217 | 116 | 4 | 3 | 204 | 1 | 217 | 3.03e-37 | 129 |
| MS.gene91761.t1 | AT5G39180 | 42.328 | 189 | 102 | 3 | 23 | 204 | 29 | 217 | 4.86e-37 | 129 |
| MS.gene91761.t1 | AT4G14630 | 41.667 | 192 | 97 | 4 | 23 | 203 | 32 | 219 | 1.00e-36 | 128 |
| MS.gene91761.t1 | AT3G04150 | 39.899 | 198 | 105 | 4 | 23 | 210 | 32 | 225 | 1.17e-36 | 128 |
| MS.gene91761.t1 | AT3G04150 | 40.782 | 179 | 101 | 2 | 37 | 210 | 60 | 238 | 3.88e-36 | 127 |
| MS.gene91761.t1 | AT3G05930 | 42.781 | 187 | 100 | 4 | 23 | 204 | 29 | 213 | 4.70e-36 | 126 |
| MS.gene91761.t1 | AT5G38940 | 47.059 | 153 | 77 | 2 | 23 | 171 | 32 | 184 | 8.56e-36 | 125 |
| MS.gene91761.t1 | AT5G38940 | 47.059 | 153 | 77 | 2 | 23 | 171 | 56 | 208 | 1.30e-35 | 126 |
| MS.gene91761.t1 | AT5G38910 | 45.856 | 181 | 82 | 4 | 14 | 182 | 17 | 193 | 5.83e-35 | 123 |
| MS.gene91761.t1 | AT3G04190 | 44.512 | 164 | 85 | 3 | 23 | 181 | 32 | 194 | 1.01e-34 | 123 |
| MS.gene91761.t1 | AT5G38930 | 46.405 | 153 | 78 | 2 | 23 | 171 | 32 | 184 | 1.24e-34 | 122 |
| MS.gene91761.t1 | AT5G39190 | 44.304 | 158 | 83 | 2 | 55 | 207 | 41 | 198 | 4.22e-34 | 120 |
| MS.gene91761.t1 | AT3G10080 | 39.306 | 173 | 99 | 2 | 21 | 188 | 30 | 201 | 4.57e-34 | 121 |
| MS.gene91761.t1 | AT3G04170 | 41.451 | 193 | 98 | 6 | 23 | 206 | 32 | 218 | 4.92e-34 | 121 |
| MS.gene91761.t1 | AT5G39160 | 44.304 | 158 | 83 | 2 | 55 | 207 | 41 | 198 | 5.18e-34 | 120 |
| MS.gene91761.t1 | AT3G10080 | 39.306 | 173 | 99 | 2 | 21 | 188 | 101 | 272 | 1.93e-33 | 121 |
| MS.gene91761.t1 | AT3G04180 | 40.314 | 191 | 106 | 4 | 23 | 206 | 32 | 221 | 6.67e-33 | 118 |
| MS.gene91761.t1 | AT1G10460 | 38.202 | 178 | 102 | 4 | 37 | 208 | 42 | 217 | 1.19e-32 | 117 |
| MS.gene91761.t1 | AT1G74820 | 35.385 | 195 | 122 | 2 | 11 | 203 | 30 | 222 | 9.37e-29 | 107 |
| MS.gene91761.t1 | AT5G38910 | 34.637 | 179 | 68 | 4 | 14 | 182 | 17 | 156 | 6.50e-15 | 70.5 |
Find 52 sgRNAs with CRISPR-Local
Find 61 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAACCACCGCTGTTAATT+TGG | 0.171660 | 2.1:-49616564 | None:intergenic |
| GATAATGTTTGAGGTGTTTC+CGG | 0.296237 | 2.1:-49616293 | None:intergenic |
| TAACCCTGGTTTACAGATAT+TGG | 0.318535 | 2.1:+49616618 | MS.gene91761:CDS |
| AAGAAGCTTAAGGGTGTTCT+TGG | 0.328993 | 2.1:+49616715 | MS.gene91761:CDS |
| GAATATCCGGCGGGGCCATT+TGG | 0.367744 | 2.1:-49616211 | None:intergenic |
| ACTTTACAAAGGTGATGTTA+TGG | 0.394160 | 2.1:+49616516 | MS.gene91761:CDS |
| TCACACTCACCCCGGTGCTT+CGG | 0.412458 | 2.1:+49616420 | MS.gene91761:CDS |
| GCGCAATTTGCCGGTTTAAA+CGG | 0.412670 | 2.1:+49616343 | MS.gene91761:CDS |
| GCATTCGACGCGCAATTTGC+CGG | 0.427362 | 2.1:+49616334 | MS.gene91761:CDS |
| CCCCGGTGCTTCGGAGGTGT+TGG | 0.428887 | 2.1:+49616429 | MS.gene91761:CDS |
| GTTTGAGGTGTTTCCGGCTG+CGG | 0.433795 | 2.1:-49616287 | None:intergenic |
| TTTGCCGGTTTAAACGGTCT+TGG | 0.436173 | 2.1:+49616349 | MS.gene91761:CDS |
| AGGTGTTTCCGGCTGCGGCT+AGG | 0.439256 | 2.1:-49616282 | None:intergenic |
| GGCGGCTTTGATAATGTTTG+AGG | 0.446545 | 2.1:-49616302 | None:intergenic |
| CTCGCGCGTTTAGATTTAGC+TGG | 0.448675 | 2.1:+49616379 | MS.gene91761:CDS |
| CGTTTAGATTTAGCTGGAGG+TGG | 0.457705 | 2.1:+49616385 | MS.gene91761:CDS |
| CTACTACTGATGCATGAGAA+AGG | 0.465818 | 2.1:-49616162 | None:intergenic |
| AAGGGTGTTCTTGGAGGAAG+TGG | 0.467256 | 2.1:+49616724 | MS.gene91761:CDS |
| AATTCCAAGACCGTTTAAAC+CGG | 0.473337 | 2.1:-49616353 | None:intergenic |
| GAGGTGTTGGTTGTTATTCA+AGG | 0.473998 | 2.1:+49616442 | MS.gene91761:CDS |
| TTCCGGCTGCGGCTAGGCCG+TGG | 0.476148 | 2.1:-49616276 | None:intergenic |
| AACCAACACCTCCGAAGCAC+CGG | 0.476326 | 2.1:-49616431 | None:intergenic |
| TACCACGGCCTAGCCGCAGC+CGG | 0.483642 | 2.1:+49616274 | MS.gene91761:CDS |
| AAGCTTAAGGGTGTTCTTGG+AGG | 0.485352 | 2.1:+49616718 | MS.gene91761:CDS |
| CACTCACCCCGGTGCTTCGG+AGG | 0.485416 | 2.1:+49616423 | MS.gene91761:CDS |
| ATTCAAGGAACAATCTGTGC+TGG | 0.486403 | 2.1:+49616457 | MS.gene91761:CDS |
| GCAGATTACAATTTACCAAA+TGG | 0.490944 | 2.1:+49616196 | MS.gene91761:CDS |
| TGCTGTAGTGAAGAAGCTTA+AGG | 0.492145 | 2.1:+49616705 | MS.gene91761:CDS |
| GCAAATTGCGCGTCGAATGC+AGG | 0.494231 | 2.1:-49616331 | None:intergenic |
| TACTACTGATGCATGAGAAA+GGG | 0.497924 | 2.1:-49616161 | None:intergenic |
| GCTGTAGTGAAGAAGCTTAA+GGG | 0.505860 | 2.1:+49616706 | MS.gene91761:CDS |
| ACCAACACCTCCGAAGCACC+GGG | 0.518291 | 2.1:-49616430 | None:intergenic |
| AGCTAAATCTAAACGCGCGA+GGG | 0.530491 | 2.1:-49616377 | None:intergenic |
| AATGTAAACAGTGTTGGCAG+AGG | 0.543013 | 2.1:-49616488 | None:intergenic |
| CGCGTCGAATGCAGGTGTCA+CGG | 0.544490 | 2.1:-49616323 | None:intergenic |
| GTTGCAGTAATCAACTCAGT+TGG | 0.549809 | 2.1:-49616667 | None:intergenic |
| AATTTACCAAATGGCCCCGC+CGG | 0.556510 | 2.1:+49616205 | MS.gene91761:CDS |
| AAATCCAATATCTGTAAACC+AGG | 0.562055 | 2.1:-49616622 | None:intergenic |
| TACATTAAAACACTTTACAA+AGG | 0.570770 | 2.1:+49616505 | MS.gene91761:CDS |
| AGCTTTAGTAGTGCTAACCC+TGG | 0.575691 | 2.1:+49616604 | MS.gene91761:CDS |
| GCGCGTTTAGATTTAGCTGG+AGG | 0.575819 | 2.1:+49616382 | MS.gene91761:CDS |
| GGCTGCGGCTAGGCCGTGGT+AGG | 0.586379 | 2.1:-49616272 | None:intergenic |
| CATTTCCAAATTAACAGCGG+TGG | 0.589981 | 2.1:+49616559 | MS.gene91761:CDS |
| GCACCGGGGTGAGTGTGAAG+TGG | 0.596047 | 2.1:-49616415 | None:intergenic |
| TGGAAATGCAACAATCCTTG+TGG | 0.601071 | 2.1:-49616544 | None:intergenic |
| CAGCTAAATCTAAACGCGCG+AGG | 0.614597 | 2.1:-49616378 | None:intergenic |
| ATTCCACTTCACACTCACCC+CGG | 0.645296 | 2.1:+49616412 | MS.gene91761:CDS |
| GAAAATGACTTCGCCTACCA+CGG | 0.651628 | 2.1:+49616259 | MS.gene91761:CDS |
| TTGCATTTCCAAATTAACAG+CGG | 0.679670 | 2.1:+49616556 | MS.gene91761:CDS |
| AATCCAATATCTGTAAACCA+GGG | 0.697449 | 2.1:-49616621 | None:intergenic |
| GTCGAATGCAGGTGTCACGG+CGG | 0.734661 | 2.1:-49616320 | None:intergenic |
| CCAACACCTCCGAAGCACCG+GGG | 0.770530 | 2.1:-49616429 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACATTAAAACACTTTACAA+AGG | + | chr2.1:49616505-49616524 | MS.gene91761:CDS | 20.0% |
| !!! | TGTTTTAATGTAAACAGTGT+TGG | - | chr2.1:49616497-49616516 | None:intergenic | 25.0% |
| AAATCCAATATCTGTAAACC+AGG | - | chr2.1:49616625-49616644 | None:intergenic | 30.0% | |
| AATCCAATATCTGTAAACCA+GGG | - | chr2.1:49616624-49616643 | None:intergenic | 30.0% | |
| ACTTTACAAAGGTGATGTTA+TGG | + | chr2.1:49616516-49616535 | MS.gene91761:CDS | 30.0% | |
| GCAGATTACAATTTACCAAA+TGG | + | chr2.1:49616196-49616215 | MS.gene91761:CDS | 30.0% | |
| GGAAAGAAGAGAAAAAATGA+AGG | - | chr2.1:49616143-49616162 | None:intergenic | 30.0% | |
| TTGCATTTCCAAATTAACAG+CGG | + | chr2.1:49616556-49616575 | MS.gene91761:CDS | 30.0% | |
| !!! | TCATTTTCGGTTACTTTTGA+TGG | - | chr2.1:49616247-49616266 | None:intergenic | 30.0% |
| AATTCCAAGACCGTTTAAAC+CGG | - | chr2.1:49616356-49616375 | None:intergenic | 35.0% | |
| TAACCCTGGTTTACAGATAT+TGG | + | chr2.1:49616618-49616637 | MS.gene91761:CDS | 35.0% | |
| TACTACTGATGCATGAGAAA+GGG | - | chr2.1:49616164-49616183 | None:intergenic | 35.0% | |
| ! | GATAATGTTTGAGGTGTTTC+CGG | - | chr2.1:49616296-49616315 | None:intergenic | 35.0% |
| ! | GATGTTATGGTTTTTCCACA+AGG | + | chr2.1:49616529-49616548 | MS.gene91761:CDS | 35.0% |
| ! | TGGTGTTTTGCAAGAATATC+CGG | - | chr2.1:49616227-49616246 | None:intergenic | 35.0% |
| ATTCAAGGAACAATCTGTGC+TGG | + | chr2.1:49616457-49616476 | MS.gene91761:CDS | 40.0% | |
| CATTTCCAAATTAACAGCGG+TGG | + | chr2.1:49616559-49616578 | MS.gene91761:CDS | 40.0% | |
| CTACTACTGATGCATGAGAA+AGG | - | chr2.1:49616165-49616184 | None:intergenic | 40.0% | |
| GCTGTAGTGAAGAAGCTTAA+GGG | + | chr2.1:49616706-49616725 | MS.gene91761:CDS | 40.0% | |
| GTTGCAGTAATCAACTCAGT+TGG | - | chr2.1:49616670-49616689 | None:intergenic | 40.0% | |
| TAGAACCACCGCTGTTAATT+TGG | - | chr2.1:49616567-49616586 | None:intergenic | 40.0% | |
| TGCTGTAGTGAAGAAGCTTA+AGG | + | chr2.1:49616705-49616724 | MS.gene91761:CDS | 40.0% | |
| TGGAAATGCAACAATCCTTG+TGG | - | chr2.1:49616547-49616566 | None:intergenic | 40.0% | |
| ! | TGTTTTGCAAGAATATCCGG+CGG | - | chr2.1:49616224-49616243 | None:intergenic | 40.0% |
| !! | AAGAAGCTTAAGGGTGTTCT+TGG | + | chr2.1:49616715-49616734 | MS.gene91761:CDS | 40.0% |
| !! | AATGTAAACAGTGTTGGCAG+AGG | - | chr2.1:49616491-49616510 | None:intergenic | 40.0% |
| !! | GAGGTGTTGGTTGTTATTCA+AGG | + | chr2.1:49616442-49616461 | MS.gene91761:CDS | 40.0% |
| AGCTAAATCTAAACGCGCGA+GGG | - | chr2.1:49616380-49616399 | None:intergenic | 45.0% | |
| CGTTTAGATTTAGCTGGAGG+TGG | + | chr2.1:49616385-49616404 | MS.gene91761:CDS | 45.0% | |
| GAAAATGACTTCGCCTACCA+CGG | + | chr2.1:49616259-49616278 | MS.gene91761:CDS | 45.0% | |
| ! | AGCTTTAGTAGTGCTAACCC+TGG | + | chr2.1:49616604-49616623 | MS.gene91761:CDS | 45.0% |
| ! | GTTTTGCAAGAATATCCGGC+GGG | - | chr2.1:49616223-49616242 | None:intergenic | 45.0% |
| ! | TTTTGCAAGAATATCCGGCG+GGG | - | chr2.1:49616222-49616241 | None:intergenic | 45.0% |
| !! | AAGCTTAAGGGTGTTCTTGG+AGG | + | chr2.1:49616718-49616737 | MS.gene91761:CDS | 45.0% |
| !! | GCGCAATTTGCCGGTTTAAA+CGG | + | chr2.1:49616343-49616362 | MS.gene91761:CDS | 45.0% |
| !! | GGCGGCTTTGATAATGTTTG+AGG | - | chr2.1:49616305-49616324 | None:intergenic | 45.0% |
| !! | GTGGTAGGCGAAGTCATTTT+CGG | - | chr2.1:49616260-49616279 | None:intergenic | 45.0% |
| !! | TTTGCCGGTTTAAACGGTCT+TGG | + | chr2.1:49616349-49616368 | MS.gene91761:CDS | 45.0% |
| AATTTACCAAATGGCCCCGC+CGG | + | chr2.1:49616205-49616224 | MS.gene91761:CDS | 50.0% | |
| ATTCCACTTCACACTCACCC+CGG | + | chr2.1:49616412-49616431 | MS.gene91761:CDS | 50.0% | |
| CAGCTAAATCTAAACGCGCG+AGG | - | chr2.1:49616381-49616400 | None:intergenic | 50.0% | |
| CTCGCGCGTTTAGATTTAGC+TGG | + | chr2.1:49616379-49616398 | MS.gene91761:CDS | 50.0% | |
| GCGCGTTTAGATTTAGCTGG+AGG | + | chr2.1:49616382-49616401 | MS.gene91761:CDS | 50.0% | |
| !! | AAGGGTGTTCTTGGAGGAAG+TGG | + | chr2.1:49616724-49616743 | MS.gene91761:CDS | 50.0% |
| AACCAACACCTCCGAAGCAC+CGG | - | chr2.1:49616434-49616453 | None:intergenic | 55.0% | |
| GCAAATTGCGCGTCGAATGC+AGG | - | chr2.1:49616334-49616353 | None:intergenic | 55.0% | |
| GCATTCGACGCGCAATTTGC+CGG | + | chr2.1:49616334-49616353 | MS.gene91761:CDS | 55.0% | |
| ! | GTTTGAGGTGTTTCCGGCTG+CGG | - | chr2.1:49616290-49616309 | None:intergenic | 55.0% |
| CGCGTCGAATGCAGGTGTCA+CGG | - | chr2.1:49616326-49616345 | None:intergenic | 60.0% | |
| GAATATCCGGCGGGGCCATT+TGG | - | chr2.1:49616214-49616233 | None:intergenic | 60.0% | |
| TCACACTCACCCCGGTGCTT+CGG | + | chr2.1:49616420-49616439 | MS.gene91761:CDS | 60.0% | |
| ! | ACCAACACCTCCGAAGCACC+GGG | - | chr2.1:49616433-49616452 | None:intergenic | 60.0% |
| ! | GTCGAATGCAGGTGTCACGG+CGG | - | chr2.1:49616323-49616342 | None:intergenic | 60.0% |
| AGGTGTTTCCGGCTGCGGCT+AGG | - | chr2.1:49616285-49616304 | None:intergenic | 65.0% | |
| GCACCGGGGTGAGTGTGAAG+TGG | - | chr2.1:49616418-49616437 | None:intergenic | 65.0% | |
| !! | CCAACACCTCCGAAGCACCG+GGG | - | chr2.1:49616432-49616451 | None:intergenic | 65.0% |
| CACTCACCCCGGTGCTTCGG+AGG | + | chr2.1:49616423-49616442 | MS.gene91761:CDS | 70.0% | |
| TACCACGGCCTAGCCGCAGC+CGG | + | chr2.1:49616274-49616293 | MS.gene91761:CDS | 70.0% | |
| ! | CCCCGGTGCTTCGGAGGTGT+TGG | + | chr2.1:49616429-49616448 | MS.gene91761:CDS | 70.0% |
| GGCTGCGGCTAGGCCGTGGT+AGG | - | chr2.1:49616275-49616294 | None:intergenic | 75.0% | |
| TTCCGGCTGCGGCTAGGCCG+TGG | - | chr2.1:49616279-49616298 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 49616118 | 49616750 | 49616118 | ID=MS.gene91761 |
| chr2.1 | mRNA | 49616118 | 49616750 | 49616118 | ID=MS.gene91761.t1;Parent=MS.gene91761 |
| chr2.1 | exon | 49616118 | 49616750 | 49616118 | ID=MS.gene91761.t1.exon1;Parent=MS.gene91761.t1 |
| chr2.1 | CDS | 49616118 | 49616750 | 49616118 | ID=cds.MS.gene91761.t1;Parent=MS.gene91761.t1 |
| Gene Sequence |
| Protein sequence |
