Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93767.t1 | XP_003631090.1 | 93.8 | 256 | 16 | 0 | 1 | 256 | 1 | 256 | 1.30E-117 | 432.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93767.t1 | Q9LDY5 | 69.4 | 186 | 53 | 1 | 75 | 256 | 62 | 247 | 4.9e-73 | 275.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93767.t1 | Q1SMZ8 | 93.8 | 256 | 16 | 0 | 1 | 256 | 1 | 256 | 9.4e-118 | 432.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene93767 | 0.817201 | 3.73E-52 | -1.69E-46 |
| MS.gene049222 | MS.gene93767 | 0.801401 | 9.16E-49 | -1.69E-46 |
| MS.gene049285 | MS.gene93767 | 0.803863 | 2.85E-49 | -1.69E-46 |
| MS.gene049320 | MS.gene93767 | 0.803202 | 3.90E-49 | -1.69E-46 |
| MS.gene049427 | MS.gene93767 | 0.842666 | 2.25E-58 | -1.69E-46 |
| MS.gene049661 | MS.gene93767 | 0.808405 | 3.15E-50 | -1.69E-46 |
| MS.gene049662 | MS.gene93767 | 0.80168 | 8.03E-49 | -1.69E-46 |
| MS.gene049805 | MS.gene93767 | 0.820887 | 5.41E-53 | -1.69E-46 |
| MS.gene050076 | MS.gene93767 | 0.864464 | 1.19E-64 | -1.69E-46 |
| MS.gene050163 | MS.gene93767 | 0.829126 | 6.13E-55 | -1.69E-46 |
| MS.gene050165 | MS.gene93767 | 0.805502 | 1.29E-49 | -1.69E-46 |
| MS.gene050404 | MS.gene93767 | 0.842307 | 2.80E-58 | -1.69E-46 |
| MS.gene050406 | MS.gene93767 | 0.834513 | 2.87E-56 | -1.69E-46 |
| MS.gene050432 | MS.gene93767 | 0.845967 | 2.92E-59 | -1.69E-46 |
| MS.gene050529 | MS.gene93767 | 0.806485 | 8.04E-50 | -1.69E-46 |
| MS.gene050767 | MS.gene93767 | 0.838208 | 3.30E-57 | -1.69E-46 |
| MS.gene050770 | MS.gene93767 | 0.840522 | 8.27E-58 | -1.69E-46 |
| MS.gene050781 | MS.gene93767 | 0.822738 | 2.02E-53 | -1.69E-46 |
| MS.gene050783 | MS.gene93767 | 0.842173 | 3.04E-58 | -1.69E-46 |
| MS.gene050812 | MS.gene93767 | 0.819667 | 1.03E-52 | -1.69E-46 |
| MS.gene05100 | MS.gene93767 | 0.833946 | 3.98E-56 | -1.69E-46 |
| MS.gene05101 | MS.gene93767 | 0.826785 | 2.24E-54 | -1.69E-46 |
| MS.gene051171 | MS.gene93767 | 0.800312 | 1.53E-48 | -1.69E-46 |
| MS.gene051228 | MS.gene93767 | 0.834465 | 2.95E-56 | -1.69E-46 |
| MS.gene051471 | MS.gene93767 | 0.821011 | 5.07E-53 | -1.69E-46 |
| MS.gene051582 | MS.gene93767 | 0.807906 | 4.02E-50 | -1.69E-46 |
| MS.gene051666 | MS.gene93767 | 0.864832 | 9.15E-65 | -1.69E-46 |
| MS.gene051810 | MS.gene93767 | 0.815295 | 9.95E-52 | -1.69E-46 |
| MS.gene052078 | MS.gene93767 | 0.818626 | 1.78E-52 | -1.69E-46 |
| MS.gene052271 | MS.gene93767 | 0.803624 | 3.19E-49 | -1.69E-46 |
| MS.gene052290 | MS.gene93767 | 0.892669 | 1.28E-74 | -1.69E-46 |
| MS.gene052310 | MS.gene93767 | 0.819273 | 1.27E-52 | -1.69E-46 |
| MS.gene052322 | MS.gene93767 | 0.804982 | 1.66E-49 | -1.69E-46 |
| MS.gene052326 | MS.gene93767 | 0.8207 | 5.97E-53 | -1.69E-46 |
| MS.gene052379 | MS.gene93767 | 0.83088 | 2.29E-55 | -1.69E-46 |
| MS.gene052421 | MS.gene93767 | 0.800679 | 1.29E-48 | -1.69E-46 |
| MS.gene053009 | MS.gene93767 | 0.821676 | 3.56E-53 | -1.69E-46 |
| MS.gene053103 | MS.gene93767 | 0.843671 | 1.21E-58 | -1.69E-46 |
| MS.gene053104 | MS.gene93767 | 0.840865 | 6.72E-58 | -1.69E-46 |
| MS.gene053107 | MS.gene93767 | 0.824092 | 9.74E-54 | -1.69E-46 |
| MS.gene053207 | MS.gene93767 | 0.812422 | 4.27E-51 | -1.69E-46 |
| MS.gene053209 | MS.gene93767 | 0.800989 | 1.11E-48 | -1.69E-46 |
| MS.gene053213 | MS.gene93767 | 0.815125 | 1.09E-51 | -1.69E-46 |
| MS.gene053286 | MS.gene93767 | 0.805863 | 1.09E-49 | -1.69E-46 |
| MS.gene053322 | MS.gene93767 | 0.870648 | 1.25E-66 | -1.69E-46 |
| MS.gene053579 | MS.gene93767 | 0.817021 | 4.09E-52 | -1.69E-46 |
| MS.gene053632 | MS.gene93767 | 0.845755 | 3.33E-59 | -1.69E-46 |
| MS.gene053971 | MS.gene93767 | 0.817936 | 2.55E-52 | -1.69E-46 |
| MS.gene054123 | MS.gene93767 | 0.805395 | 1.36E-49 | -1.69E-46 |
| MS.gene054376 | MS.gene93767 | 0.833074 | 6.57E-56 | -1.69E-46 |
| MS.gene054600 | MS.gene93767 | 0.814639 | 1.39E-51 | -1.69E-46 |
| MS.gene054642 | MS.gene93767 | 0.837631 | 4.64E-57 | -1.69E-46 |
| MS.gene054802 | MS.gene93767 | 0.839493 | 1.53E-57 | -1.69E-46 |
| MS.gene054803 | MS.gene93767 | 0.835057 | 2.09E-56 | -1.69E-46 |
| MS.gene054804 | MS.gene93767 | 0.842348 | 2.73E-58 | -1.69E-46 |
| MS.gene055254 | MS.gene93767 | 0.862107 | 6.40E-64 | -1.69E-46 |
| MS.gene055397 | MS.gene93767 | 0.863521 | 2.35E-64 | -1.69E-46 |
| MS.gene055412 | MS.gene93767 | 0.811861 | 5.66E-51 | -1.69E-46 |
| MS.gene055499 | MS.gene93767 | 0.858999 | 5.60E-63 | -1.69E-46 |
| MS.gene055896 | MS.gene93767 | 0.818116 | 2.32E-52 | -1.69E-46 |
| MS.gene05592 | MS.gene93767 | 0.816389 | 5.67E-52 | -1.69E-46 |
| MS.gene056374 | MS.gene93767 | 0.809112 | 2.22E-50 | -1.69E-46 |
| MS.gene056407 | MS.gene93767 | 0.813847 | 2.08E-51 | -1.69E-46 |
| MS.gene056609 | MS.gene93767 | 0.819315 | 1.24E-52 | -1.69E-46 |
| MS.gene056657 | MS.gene93767 | 0.806491 | 8.02E-50 | -1.69E-46 |
| MS.gene056664 | MS.gene93767 | 0.807873 | 4.09E-50 | -1.69E-46 |
| MS.gene056897 | MS.gene93767 | 0.824343 | 8.50E-54 | -1.69E-46 |
| MS.gene057011 | MS.gene93767 | 0.829297 | 5.57E-55 | -1.69E-46 |
| MS.gene05702 | MS.gene93767 | 0.807519 | 4.86E-50 | -1.69E-46 |
| MS.gene057129 | MS.gene93767 | 0.893505 | 5.91E-75 | -1.69E-46 |
| MS.gene057196 | MS.gene93767 | 0.803671 | 3.12E-49 | -1.69E-46 |
| MS.gene057246 | MS.gene93767 | 0.850041 | 2.19E-60 | -1.69E-46 |
| MS.gene057295 | MS.gene93767 | 0.843236 | 1.59E-58 | -1.69E-46 |
| MS.gene057416 | MS.gene93767 | 0.823345 | 1.46E-53 | -1.69E-46 |
| MS.gene058019 | MS.gene93767 | 0.82618 | 3.13E-54 | -1.69E-46 |
| MS.gene058082 | MS.gene93767 | 0.810838 | 9.45E-51 | -1.69E-46 |
| MS.gene058233 | MS.gene93767 | 0.853978 | 1.67E-61 | -1.69E-46 |
| MS.gene058293 | MS.gene93767 | 0.865751 | 4.70E-65 | -1.69E-46 |
| MS.gene058365 | MS.gene93767 | 0.807192 | 5.70E-50 | -1.69E-46 |
| MS.gene058419 | MS.gene93767 | 0.82353 | 1.32E-53 | -1.69E-46 |
| MS.gene058544 | MS.gene93767 | 0.812311 | 4.52E-51 | -1.69E-46 |
| MS.gene058660 | MS.gene93767 | 0.83682 | 7.48E-57 | -1.69E-46 |
| MS.gene058723 | MS.gene93767 | 0.824485 | 7.87E-54 | -1.69E-46 |
| MS.gene058746 | MS.gene93767 | 0.817996 | 2.47E-52 | -1.69E-46 |
| MS.gene05934 | MS.gene93767 | 0.810193 | 1.30E-50 | -1.69E-46 |
| MS.gene059536 | MS.gene93767 | 0.810683 | 1.02E-50 | -1.69E-46 |
| MS.gene059677 | MS.gene93767 | 0.817061 | 4.01E-52 | -1.69E-46 |
| MS.gene059688 | MS.gene93767 | 0.827283 | 1.70E-54 | -1.69E-46 |
| MS.gene059692 | MS.gene93767 | 0.842778 | 2.10E-58 | -1.69E-46 |
| MS.gene059695 | MS.gene93767 | 0.84517 | 4.80E-59 | -1.69E-46 |
| MS.gene059858 | MS.gene93767 | 0.824239 | 8.99E-54 | -1.69E-46 |
| MS.gene059894 | MS.gene93767 | 0.804218 | 2.40E-49 | -1.69E-46 |
| MS.gene059960 | MS.gene93767 | 0.870984 | 9.65E-67 | -1.69E-46 |
| MS.gene060804 | MS.gene93767 | 0.823815 | 1.13E-53 | -1.69E-46 |
| MS.gene06092 | MS.gene93767 | 0.828109 | 1.08E-54 | -1.69E-46 |
| MS.gene061041 | MS.gene93767 | 0.817096 | 3.94E-52 | -1.69E-46 |
| MS.gene061051 | MS.gene93767 | -0.801931 | 7.13E-49 | -1.69E-46 |
| MS.gene061150 | MS.gene93767 | 0.827559 | 1.46E-54 | -1.69E-46 |
| MS.gene061200 | MS.gene93767 | 0.840269 | 9.63E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93767.t1 | MTR_8g107010 | 98.047 | 256 | 5 | 0 | 1 | 256 | 1 | 256 | 0.0 | 509 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93767.t1 | AT1G18170 | 70.430 | 186 | 51 | 2 | 75 | 256 | 62 | 247 | 1.15e-95 | 281 |
| MS.gene93767.t1 | AT1G73655 | 50.000 | 252 | 100 | 4 | 1 | 251 | 1 | 227 | 1.50e-79 | 239 |
| MS.gene93767.t1 | AT3G10060 | 29.379 | 177 | 101 | 5 | 87 | 255 | 60 | 220 | 7.03e-13 | 66.6 |
Find 80 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGAGAATGGTGCTGATTT+AGG | 0.153499 | 4.2:-374356 | MS.gene93767:CDS |
| GATGAAACAACTGGTTTAAT+AGG | 0.212922 | 4.2:+375012 | None:intergenic |
| CTAAACATGGCCACTATCTT+TGG | 0.258527 | 4.2:-375210 | None:intergenic |
| GAGAGAATGGTGCTGATTTA+GGG | 0.288158 | 4.2:-374355 | MS.gene93767:CDS |
| AGTTATTGTGCCTCCTGAAT+TGG | 0.295641 | 4.2:-374384 | MS.gene93767:CDS |
| TTTGGTTGTGATTGATATAA+TGG | 0.298752 | 4.2:-374561 | MS.gene93767:CDS |
| TTGACCAGACGGTTTGGCCT+TGG | 0.354356 | 4.2:-374952 | MS.gene93767:CDS |
| TTCTCTCTAAATCCCAATTC+AGG | 0.369157 | 4.2:+374371 | None:intergenic |
| GAAACCATTGGCTCTAGTTA+TGG | 0.370613 | 4.2:-374486 | MS.gene93767:CDS |
| AAACCATTGGCTCTAGTTAT+GGG | 0.372920 | 4.2:-374485 | MS.gene93767:CDS |
| ATAATTAACCTTATGCCATT+AGG | 0.374600 | 4.2:+374702 | None:intergenic |
| TCACACACACCCTTACTATA+TGG | 0.378280 | 4.2:+374455 | None:intergenic |
| GTGATGACTGGTTCTGGTAT+GGG | 0.394646 | 4.2:+375164 | None:intergenic |
| GCCTTGGAGCTGGTCTTGCA+TGG | 0.396282 | 4.2:-374936 | MS.gene93767:CDS |
| ACCAGTTGTTTCATCAACTA+AGG | 0.400326 | 4.2:-375004 | MS.gene93767:CDS |
| GTTATTGTGCCTCCTGAATT+GGG | 0.401025 | 4.2:-374383 | MS.gene93767:CDS |
| TGTGATGACTGGTTCTGGTA+TGG | 0.408947 | 4.2:+375163 | None:intergenic |
| GTTGTTGACTGTGGAGATAA+TGG | 0.413539 | 4.2:+375090 | None:intergenic |
| TATGCCAAGGCGAGGTGATT+TGG | 0.421986 | 4.2:-374579 | MS.gene93767:CDS |
| CCTTGGAGCTGGTCTTGCAT+GGG | 0.424931 | 4.2:-374935 | MS.gene93767:CDS |
| TTGGTTGTGATTGATATAAT+GGG | 0.427668 | 4.2:-374560 | MS.gene93767:CDS |
| GAATGTTGAGGAGGAGAAAG+AGG | 0.427854 | 4.2:-374733 | MS.gene93767:CDS |
| ACTTCCTTGACCAGACGGTT+TGG | 0.433297 | 4.2:-374958 | MS.gene93767:CDS |
| AGACGGTTTGGCCTTGGAGC+TGG | 0.438403 | 4.2:-374946 | MS.gene93767:CDS |
| AGGAATCTGTTGCTGTGCTT+TGG | 0.442859 | 4.2:+375032 | None:intergenic |
| TGATGACTGGTTCTGGTATG+GGG | 0.448826 | 4.2:+375165 | None:intergenic |
| ACCTTAGTTGATGAAACAAC+TGG | 0.450082 | 4.2:+375003 | None:intergenic |
| AGTGATGTGATGACTGGTTC+TGG | 0.451572 | 4.2:+375158 | None:intergenic |
| GGGGTCAAGGCCATATAGTA+AGG | 0.452971 | 4.2:-374465 | MS.gene93767:CDS |
| AGCTCCAAGGCCAAACCGTC+TGG | 0.454662 | 4.2:+374948 | None:intergenic |
| GGAGCTGGTCTTGCATGGGT+TGG | 0.455263 | 4.2:-374931 | MS.gene93767:CDS |
| AGGTACTATGAATTGAAAAT+CGG | 0.465928 | 4.2:-374611 | MS.gene93767:CDS |
| AAAGAGGTGATTCTGCCTAA+TGG | 0.469758 | 4.2:-374717 | MS.gene93767:CDS |
| GTGTTTGTGAACACATTTGA+AGG | 0.494203 | 4.2:-374515 | MS.gene93767:CDS |
| CACAACAAGAATCTAATACA+AGG | 0.494667 | 4.2:-374855 | MS.gene93767:intron |
| GGTTGCGGTTGTTGTGGTGG+AGG | 0.494679 | 4.2:+375120 | None:intergenic |
| GAATTGGGATTTAGAGAGAA+TGG | 0.496442 | 4.2:-374368 | MS.gene93767:CDS |
| AACACTTGAATACGTTGTAC+AGG | 0.502708 | 4.2:-374306 | MS.gene93767:CDS |
| GAGGGTTGCGGTTGTTGTGG+TGG | 0.510547 | 4.2:+375117 | None:intergenic |
| AAACCGTCTGGTCAAGGAAG+TGG | 0.514843 | 4.2:+374960 | None:intergenic |
| CCTGAGGGTTGCGGTTGTTG+TGG | 0.518773 | 4.2:+375114 | None:intergenic |
| TGATTCTGCCTAATGGCATA+AGG | 0.521446 | 4.2:-374710 | MS.gene93767:intron |
| TTCAAATTTGTTGTTGACTG+TGG | 0.526248 | 4.2:+375081 | None:intergenic |
| AATGGTGCTGATTTAGGGTC+TGG | 0.527304 | 4.2:-374350 | MS.gene93767:CDS |
| ATGGGAAAGGTTGAAAGCAC+AGG | 0.529021 | 4.2:-374542 | MS.gene93767:CDS |
| TGATGAGGAACCAAAGATAG+TGG | 0.529530 | 4.2:+375200 | None:intergenic |
| CCACAACAACCGCAACCCTC+AGG | 0.533605 | 4.2:-375114 | MS.gene93767:CDS |
| CTATGAAGGCAGGAGGGAAG+AGG | 0.543711 | 4.2:-374409 | MS.gene93767:CDS |
| TATAGTAAGGGTGTGTGTGA+AGG | 0.554244 | 4.2:-374452 | MS.gene93767:CDS |
| ATAGTAAGGGTGTGTGTGAA+GGG | 0.556262 | 4.2:-374451 | MS.gene93767:CDS |
| GAATCATCAAGCAGGTGCAA+TGG | 0.557467 | 4.2:+374271 | None:intergenic |
| TTGTATTCATAGGAATGTTG+AGG | 0.558846 | 4.2:-374745 | MS.gene93767:intron |
| TTGCCACTTCCTTGACCAGA+CGG | 0.563085 | 4.2:-374963 | MS.gene93767:CDS |
| TGGCTCTAGTTATGGGGTCA+AGG | 0.567583 | 4.2:-374478 | MS.gene93767:CDS |
| TGAAGGAGACAAGAAACCAT+TGG | 0.568456 | 4.2:-374498 | MS.gene93767:CDS |
| CTAAGGTTGATTCCACAGAC+TGG | 0.569193 | 4.2:-374987 | MS.gene93767:CDS |
| TTTAATCAGAATCATCAAGC+AGG | 0.570592 | 4.2:+374263 | None:intergenic |
| AAGGCCAAACCGTCTGGTCA+AGG | 0.575540 | 4.2:+374954 | None:intergenic |
| TACTATGAATTGAAAATCGG+TGG | 0.577492 | 4.2:-374608 | MS.gene93767:CDS |
| GACCCCATAACTAGAGCCAA+TGG | 0.581524 | 4.2:+374482 | None:intergenic |
| GATAATGGACCTGAGGGTTG+CGG | 0.588310 | 4.2:+375105 | None:intergenic |
| TATTCATAGGAATGTTGAGG+AGG | 0.588540 | 4.2:-374742 | MS.gene93767:intron |
| TGTGATTGATATAATGGGAA+AGG | 0.597131 | 4.2:-374555 | MS.gene93767:CDS |
| GATGACTGGTTCTGGTATGG+GGG | 0.597654 | 4.2:+375166 | None:intergenic |
| ACAACCAAATCACCTCGCCT+TGG | 0.600709 | 4.2:+374575 | None:intergenic |
| TATTCAAGTGTTGCAAGTGG+AGG | 0.610335 | 4.2:+374317 | None:intergenic |
| CCCATGCAAGACCAGCTCCA+AGG | 0.610919 | 4.2:+374935 | None:intergenic |
| GGAAGTGGCAATCCAGTCTG+TGG | 0.620097 | 4.2:+374975 | None:intergenic |
| GGGTCAAGGCCATATAGTAA+GGG | 0.620171 | 4.2:-374464 | MS.gene93767:CDS |
| TCGGTGGTGGTGATATGCCA+AGG | 0.624769 | 4.2:-374592 | MS.gene93767:CDS |
| TGAAGAAGTGATGTGATGAC+TGG | 0.628381 | 4.2:+375152 | None:intergenic |
| AACCATTGGCTCTAGTTATG+GGG | 0.638329 | 4.2:-374484 | MS.gene93767:CDS |
| ACGTATTCAAGTGTTGCAAG+TGG | 0.645589 | 4.2:+374314 | None:intergenic |
| TATGAATTGAAAATCGGTGG+TGG | 0.648406 | 4.2:-374605 | MS.gene93767:CDS |
| CTGTGGAGATAATGGACCTG+AGG | 0.664299 | 4.2:+375098 | None:intergenic |
| GGGGAGTAAGAAAATTGATG+AGG | 0.664361 | 4.2:+375185 | None:intergenic |
| TCTCTAAATCCCAATTCAGG+AGG | 0.664404 | 4.2:+374374 | None:intergenic |
| TGCTGATTTAGGGTCTGGTG+TGG | 0.665665 | 4.2:-374345 | MS.gene93767:CDS |
| TGTGGAGATAATGGACCTGA+GGG | 0.682825 | 4.2:+375099 | None:intergenic |
| GGTGGTGATATGCCAAGGCG+AGG | 0.718124 | 4.2:-374587 | MS.gene93767:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATCAAAATCATATATGAA+TGG | - | chr4.2:374687-374706 | MS.gene93767:intron | 15.0% |
| !!! | AATGATATTTTTGTATTCAT+AGG | - | chr4.2:374726-374745 | MS.gene93767:CDS | 15.0% |
| !! | ATATGTACTAAAAACTATGA+AGG | - | chr4.2:375058-375077 | MS.gene93767:CDS | 20.0% |
| ! | AGGTACTATGAATTGAAAAT+CGG | - | chr4.2:374870-374889 | MS.gene93767:CDS | 25.0% |
| ! | ATAATTAACCTTATGCCATT+AGG | + | chr4.2:374782-374801 | None:intergenic | 25.0% |
| ! | TCTCAGAACAAATAAAAACT+CGG | - | chr4.2:374593-374612 | MS.gene93767:CDS | 25.0% |
| ! | TTGGTTGTGATTGATATAAT+GGG | - | chr4.2:374921-374940 | MS.gene93767:CDS | 25.0% |
| ! | TTTGGTTGTGATTGATATAA+TGG | - | chr4.2:374920-374939 | MS.gene93767:CDS | 25.0% |
| CACAACAAGAATCTAATACA+AGG | - | chr4.2:374626-374645 | MS.gene93767:intron | 30.0% | |
| TACTATGAATTGAAAATCGG+TGG | - | chr4.2:374873-374892 | MS.gene93767:CDS | 30.0% | |
| TTGTATTCATAGGAATGTTG+AGG | - | chr4.2:374736-374755 | MS.gene93767:CDS | 30.0% | |
| ! | GATGAAACAACTGGTTTAAT+AGG | + | chr4.2:374472-374491 | None:intergenic | 30.0% |
| ! | TGTGATTGATATAATGGGAA+AGG | - | chr4.2:374926-374945 | MS.gene93767:CDS | 30.0% |
| !! | TTCAAATTTGTTGTTGACTG+TGG | + | chr4.2:374403-374422 | None:intergenic | 30.0% |
| AACACTTGAATACGTTGTAC+AGG | - | chr4.2:375175-375194 | MS.gene93767:CDS | 35.0% | |
| GAATTGGGATTTAGAGAGAA+TGG | - | chr4.2:375113-375132 | MS.gene93767:CDS | 35.0% | |
| GTACTAAAAACTATGAAGGC+AGG | - | chr4.2:375062-375081 | MS.gene93767:CDS | 35.0% | |
| GTGTTTGTGAACACATTTGA+AGG | - | chr4.2:374966-374985 | MS.gene93767:CDS | 35.0% | |
| TAAAAACTATGAAGGCAGGA+GGG | - | chr4.2:375066-375085 | MS.gene93767:CDS | 35.0% | |
| TATGAATTGAAAATCGGTGG+TGG | - | chr4.2:374876-374895 | MS.gene93767:CDS | 35.0% | |
| TATTCATAGGAATGTTGAGG+AGG | - | chr4.2:374739-374758 | MS.gene93767:intron | 35.0% | |
| TTCTCTCTAAATCCCAATTC+AGG | + | chr4.2:375113-375132 | None:intergenic | 35.0% | |
| ! | ACAAATAAAAACTCGGCTTG+AGG | - | chr4.2:374600-374619 | MS.gene93767:CDS | 35.0% |
| ! | ACCAGTTGTTTCATCAACTA+AGG | - | chr4.2:374477-374496 | MS.gene93767:CDS | 35.0% |
| !! | AAACCATTGGCTCTAGTTAT+GGG | - | chr4.2:374996-375015 | MS.gene93767:CDS | 35.0% |
| !! | ACCTTAGTTGATGAAACAAC+TGG | + | chr4.2:374481-374500 | None:intergenic | 35.0% |
| AAAGAGGTGATTCTGCCTAA+TGG | - | chr4.2:374764-374783 | MS.gene93767:intron | 40.0% | |
| AGTTATTGTGCCTCCTGAAT+TGG | - | chr4.2:375097-375116 | MS.gene93767:CDS | 40.0% | |
| CTAAAAACTATGAAGGCAGG+AGG | - | chr4.2:375065-375084 | MS.gene93767:CDS | 40.0% | |
| GGGGAGTAAGAAAATTGATG+AGG | + | chr4.2:374299-374318 | None:intergenic | 40.0% | |
| GTTATTGTGCCTCCTGAATT+GGG | - | chr4.2:375098-375117 | MS.gene93767:CDS | 40.0% | |
| TCACACACACCCTTACTATA+TGG | + | chr4.2:375029-375048 | None:intergenic | 40.0% | |
| TCTCTAAATCCCAATTCAGG+AGG | + | chr4.2:375110-375129 | None:intergenic | 40.0% | |
| TGAAGAAGTGATGTGATGAC+TGG | + | chr4.2:374332-374351 | None:intergenic | 40.0% | |
| TGAAGGAGACAAGAAACCAT+TGG | - | chr4.2:374983-375002 | MS.gene93767:CDS | 40.0% | |
| TGATGAGGAACCAAAGATAG+TGG | + | chr4.2:374284-374303 | None:intergenic | 40.0% | |
| TGATTCTGCCTAATGGCATA+AGG | - | chr4.2:374771-374790 | MS.gene93767:intron | 40.0% | |
| ! | ACGTATTCAAGTGTTGCAAG+TGG | + | chr4.2:375170-375189 | None:intergenic | 40.0% |
| ! | ATAGTAAGGGTGTGTGTGAA+GGG | - | chr4.2:375030-375049 | MS.gene93767:CDS | 40.0% |
| ! | GTTGTTGACTGTGGAGATAA+TGG | + | chr4.2:374394-374413 | None:intergenic | 40.0% |
| ! | TATAGTAAGGGTGTGTGTGA+AGG | - | chr4.2:375029-375048 | MS.gene93767:CDS | 40.0% |
| ! | TATTCAAGTGTTGCAAGTGG+AGG | + | chr4.2:375167-375186 | None:intergenic | 40.0% |
| !! | AACCATTGGCTCTAGTTATG+GGG | - | chr4.2:374997-375016 | MS.gene93767:CDS | 40.0% |
| !! | AGAGAGAATGGTGCTGATTT+AGG | - | chr4.2:375125-375144 | MS.gene93767:CDS | 40.0% |
| !! | CGACTCATTTTTGTCTCTAC+AGG | - | chr4.2:374850-374869 | MS.gene93767:intron | 40.0% |
| !! | GAAACCATTGGCTCTAGTTA+TGG | - | chr4.2:374995-375014 | MS.gene93767:CDS | 40.0% |
| !! | GAGAGAATGGTGCTGATTTA+GGG | - | chr4.2:375126-375145 | MS.gene93767:CDS | 40.0% |
| !!! | TGGGTTGGTTTTCTTGCATT+TGG | - | chr4.2:374565-374584 | MS.gene93767:CDS | 40.0% |
| AGGAATCTGTTGCTGTGCTT+TGG | + | chr4.2:374452-374471 | None:intergenic | 45.0% | |
| GAATGTTGAGGAGGAGAAAG+AGG | - | chr4.2:374748-374767 | MS.gene93767:intron | 45.0% | |
| GGGTCAAGGCCATATAGTAA+GGG | - | chr4.2:375017-375036 | MS.gene93767:CDS | 45.0% | |
| ! | AGTGATGTGATGACTGGTTC+TGG | + | chr4.2:374326-374345 | None:intergenic | 45.0% |
| ! | ATGGGAAAGGTTGAAAGCAC+AGG | - | chr4.2:374939-374958 | MS.gene93767:CDS | 45.0% |
| ! | CTAAGGTTGATTCCACAGAC+TGG | - | chr4.2:374494-374513 | MS.gene93767:CDS | 45.0% |
| !! | AATGGTGCTGATTTAGGGTC+TGG | - | chr4.2:375131-375150 | MS.gene93767:CDS | 45.0% |
| !! | GTGATGACTGGTTCTGGTAT+GGG | + | chr4.2:374320-374339 | None:intergenic | 45.0% |
| !! | TGATGACTGGTTCTGGTATG+GGG | + | chr4.2:374319-374338 | None:intergenic | 45.0% |
| !! | TGTGATGACTGGTTCTGGTA+TGG | + | chr4.2:374321-374340 | None:intergenic | 45.0% |
| !! | TGTGGAGATAATGGACCTGA+GGG | + | chr4.2:374385-374404 | None:intergenic | 45.0% |
| AAACCGTCTGGTCAAGGAAG+TGG | + | chr4.2:374524-374543 | None:intergenic | 50.0% | |
| ACAACCAAATCACCTCGCCT+TGG | + | chr4.2:374909-374928 | None:intergenic | 50.0% | |
| ACTTCCTTGACCAGACGGTT+TGG | - | chr4.2:374523-374542 | MS.gene93767:CDS | 50.0% | |
| GACCCCATAACTAGAGCCAA+TGG | + | chr4.2:375002-375021 | None:intergenic | 50.0% | |
| GGGGTCAAGGCCATATAGTA+AGG | - | chr4.2:375016-375035 | MS.gene93767:CDS | 50.0% | |
| TATGCCAAGGCGAGGTGATT+TGG | - | chr4.2:374902-374921 | MS.gene93767:CDS | 50.0% | |
| ! | TTGCCACTTCCTTGACCAGA+CGG | - | chr4.2:374518-374537 | MS.gene93767:CDS | 50.0% |
| !! | CTGTGGAGATAATGGACCTG+AGG | + | chr4.2:374386-374405 | None:intergenic | 50.0% |
| !! | GATAATGGACCTGAGGGTTG+CGG | + | chr4.2:374379-374398 | None:intergenic | 50.0% |
| !! | GATGACTGGTTCTGGTATGG+GGG | + | chr4.2:374318-374337 | None:intergenic | 50.0% |
| !! | TGCTGATTTAGGGTCTGGTG+TGG | - | chr4.2:375136-375155 | MS.gene93767:CDS | 50.0% |
| !! | TGGCTCTAGTTATGGGGTCA+AGG | - | chr4.2:375003-375022 | MS.gene93767:CDS | 50.0% |
| AAGGCCAAACCGTCTGGTCA+AGG | + | chr4.2:374530-374549 | None:intergenic | 55.0% | |
| CTATGAAGGCAGGAGGGAAG+AGG | - | chr4.2:375072-375091 | MS.gene93767:CDS | 55.0% | |
| GGAAGTGGCAATCCAGTCTG+TGG | + | chr4.2:374509-374528 | None:intergenic | 55.0% | |
| ! | TCGGTGGTGGTGATATGCCA+AGG | - | chr4.2:374889-374908 | MS.gene93767:CDS | 55.0% |
| ! | TTGACCAGACGGTTTGGCCT+TGG | - | chr4.2:374529-374548 | MS.gene93767:CDS | 55.0% |
| !! | CCTTGGAGCTGGTCTTGCAT+GGG | - | chr4.2:374546-374565 | MS.gene93767:CDS | 55.0% |
| AGCTCCAAGGCCAAACCGTC+TGG | + | chr4.2:374536-374555 | None:intergenic | 60.0% | |
| CCACAACAACCGCAACCCTC+AGG | - | chr4.2:374367-374386 | MS.gene93767:CDS | 60.0% | |
| CCCATGCAAGACCAGCTCCA+AGG | + | chr4.2:374549-374568 | None:intergenic | 60.0% | |
| CCTGAGGGTTGCGGTTGTTG+TGG | + | chr4.2:374370-374389 | None:intergenic | 60.0% | |
| GAGGGTTGCGGTTGTTGTGG+TGG | + | chr4.2:374367-374386 | None:intergenic | 60.0% | |
| GGTGGTGATATGCCAAGGCG+AGG | - | chr4.2:374894-374913 | MS.gene93767:CDS | 60.0% | |
| GGTTGCGGTTGTTGTGGTGG+AGG | + | chr4.2:374364-374383 | None:intergenic | 60.0% | |
| !! | AGACGGTTTGGCCTTGGAGC+TGG | - | chr4.2:374535-374554 | MS.gene93767:CDS | 60.0% |
| !! | GCCTTGGAGCTGGTCTTGCA+TGG | - | chr4.2:374545-374564 | MS.gene93767:CDS | 60.0% |
| !! | GGAGCTGGTCTTGCATGGGT+TGG | - | chr4.2:374550-374569 | MS.gene93767:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 374277 | 375226 | 374277 | ID=MS.gene93767 |
| chr4.2 | mRNA | 374277 | 375226 | 374277 | ID=MS.gene93767.t1;Parent=MS.gene93767 |
| chr4.2 | exon | 374856 | 375226 | 374856 | ID=MS.gene93767.t1.exon1;Parent=MS.gene93767.t1 |
| chr4.2 | CDS | 374856 | 375226 | 374856 | ID=cds.MS.gene93767.t1;Parent=MS.gene93767.t1 |
| chr4.2 | exon | 374711 | 374755 | 374711 | ID=MS.gene93767.t1.exon2;Parent=MS.gene93767.t1 |
| chr4.2 | CDS | 374711 | 374755 | 374711 | ID=cds.MS.gene93767.t1;Parent=MS.gene93767.t1 |
| chr4.2 | exon | 374277 | 374631 | 374277 | ID=MS.gene93767.t1.exon3;Parent=MS.gene93767.t1 |
| chr4.2 | CDS | 374277 | 374631 | 374277 | ID=cds.MS.gene93767.t1;Parent=MS.gene93767.t1 |
| Gene Sequence |
| Protein sequence |
