AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039520.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039520.01.T01 MTR_7g075370 57.627 295 47 5 192 408 1 295 9.71e-89 273
MsG0780039520.01.T01 MTR_7g075470 58.364 269 58 4 192 406 1 269 1.32e-81 253
MsG0780039520.01.T01 MTR_7g075185 78.351 97 10 1 11 107 520 605 3.24e-37 144
MsG0780039520.01.T01 MTR_7g075185 77.778 63 11 1 180 239 589 651 7.44e-22 98.6
MsG0780039520.01.T01 MTR_7g075420 69.474 95 18 1 1 95 24 107 8.97e-24 95.5
MsG0780039520.01.T01 MTR_7g075170 59.091 132 31 5 2 130 524 635 6.31e-19 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 91 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAAGATTACAGTAATTC+TGG 0.173295 7:-65208190 None:intergenic
ATAAACAGGAGGAAATAAAA+AGG 0.266026 7:+65207867 MsG0780039520.01.T01:intron
GTGCAGGAGGTGAAGGAGTC+TGG 0.303169 7:+65209362 MsG0780039520.01.T01:CDS
AGCCGAGTTCAAGACCTATT+TGG 0.310924 7:+65209004 MsG0780039520.01.T01:CDS
TACATTGCCATCCATCTTCT+AGG 0.313873 7:-65208162 None:intergenic
TTGAACTCGGCTTCATTTAG+AGG 0.319103 7:-65208993 None:intergenic
TGGTGCTGCTGAAGCAAAAT+TGG 0.321217 7:+65209064 MsG0780039520.01.T01:CDS
GGCACAAGTTCCTTTGTATT+GGG 0.334545 7:+65208733 MsG0780039520.01.T01:CDS
GCAATCTGCTGCGAAGGATA+TGG 0.335315 7:+65209822 MsG0780039520.01.T01:CDS
GAAATCTGCTGCGAAGGATA+TGG 0.341602 7:+65209696 MsG0780039520.01.T01:CDS
TGTTGTAATTCATCACTTGC+TGG 0.344617 7:+65208073 MsG0780039520.01.T01:CDS
TGGCACAAGTTCCTTTGTAT+TGG 0.354922 7:+65208732 MsG0780039520.01.T01:CDS
GCAGTCTGCTGCGAAGGATA+TGG 0.355180 7:+65209759 MsG0780039520.01.T01:CDS
AGCCTTCGCTCTGCTTTACT+TGG 0.361216 7:+65209419 MsG0780039520.01.T01:CDS
TTCTCTAGCCTTTGCCAAAT+AGG 0.367790 7:-65209018 None:intergenic
TTCAAAGGTGGTACAGCAAT+AGG 0.389182 7:-65209171 None:intergenic
ATCAAGTCCTTACAACTTAC+GGG 0.393275 7:-65208845 None:intergenic
TTTACTTGGGAAGGTGATTA+CGG 0.400782 7:+65209433 MsG0780039520.01.T01:CDS
CTGCAGTATTTGTAATTAAA+CGG 0.413236 7:-65208111 None:intergenic
TATCAAGTCCTTACAACTTA+CGG 0.414586 7:-65208846 None:intergenic
CAAAAGATTACAGTAATTCT+GGG 0.420020 7:-65208189 None:intergenic
ATAATCAAAGCCTTTGAGAT+AGG 0.426529 7:-65208768 None:intergenic
TCCGCAAGCTCAAGAGAAAA+GGG 0.434719 7:+65209105 MsG0780039520.01.T01:CDS
CCAATGAATGTGGTTTAGTC+GGG 0.436283 7:+65208032 MsG0780039520.01.T01:CDS
ATCCGCAAGCTCAAGAGAAA+AGG 0.438469 7:+65209104 MsG0780039520.01.T01:CDS
CCCGACTAAACCACATTCAT+TGG 0.438880 7:-65208032 None:intergenic
GTCCCAGTACAGCTCTGAAT+TGG 0.440833 7:-65209457 None:intergenic
ATTGAAGGTAAATAAGAGAT+TGG 0.447043 7:+65209567 MsG0780039520.01.T01:intron
TGATGAATTACAACAGGAAA+AGG 0.474258 7:-65208065 None:intergenic
GCCAATGAATGTGGTTTAGT+CGG 0.476670 7:+65208031 MsG0780039520.01.T01:CDS
AGCAAGTGATGAATTACAAC+AGG 0.477294 7:-65208071 None:intergenic
TCAAAGCCTTTGAGATAGGC+AGG 0.483341 7:-65208764 None:intergenic
TCGCTCTGCTTTACTTGGGA+AGG 0.491109 7:+65209424 MsG0780039520.01.T01:CDS
AATGGCTGCCCTCAAAAGTC+AGG 0.497233 7:+65207970 MsG0780039520.01.T01:CDS
GCCTTCGCTCTGCTTTACTT+GGG 0.510431 7:+65209420 MsG0780039520.01.T01:CDS
TACACAGATATCCTAGAAGA+TGG 0.511994 7:+65208151 MsG0780039520.01.T01:CDS
AGAAAAGAGAGCAGCTGCTA+GGG 0.513577 7:+65207907 MsG0780039520.01.T01:CDS
GCATTTGCATGTTGTTATGT+AGG 0.517203 7:+65208960 MsG0780039520.01.T01:CDS
TGCGAAGGATATGGAAATTG+AGG 0.517984 7:+65209705 MsG0780039520.01.T01:CDS
TGCGAAGGATATGGAAATTG+AGG 0.517984 7:+65209768 MsG0780039520.01.T01:CDS
TGCGAAGGATATGGAAATTG+AGG 0.517984 7:+65209831 MsG0780039520.01.T01:CDS
CAAGGGGCAGTCTGCTGCGA+AGG 0.521712 7:+65209753 MsG0780039520.01.T01:CDS
GAAGGTAAATAAGAGATTGG+AGG 0.529817 7:+65209570 MsG0780039520.01.T01:intron
AAAAGTATATATACGCTCAA+GGG 0.531845 7:+65209799 MsG0780039520.01.T01:CDS
GAGAAAAGAGAGCAGCTGCT+AGG 0.534310 7:+65207906 MsG0780039520.01.T01:CDS
GAAAGATGTGCAGGAGGTGA+AGG 0.535532 7:+65209355 MsG0780039520.01.T01:CDS
GAAAAGTATATATACGCTCA+AGG 0.538571 7:+65209798 MsG0780039520.01.T01:CDS
AAGTTCCTTTGTATTGGGAG+AGG 0.539049 7:+65208738 MsG0780039520.01.T01:CDS
TGCCAAATAGGTCTTGAACT+CGG 0.543861 7:-65209006 None:intergenic
TGGTGCGAAATTATCGAAAG+AGG 0.548189 7:+65207279 MsG0780039520.01.T01:CDS
CAAGGGGCAATCTGCTGCGA+AGG 0.550064 7:+65209816 MsG0780039520.01.T01:CDS
ACAGACTGCTCTGACTCAGT+TGG 0.550586 7:+65209597 MsG0780039520.01.T01:CDS
AGTTCCTTTGTATTGGGAGA+GGG 0.551929 7:+65208739 MsG0780039520.01.T01:CDS
ATTGCTCCAACATCTGCTAC+AGG 0.552341 7:+65207238 MsG0780039520.01.T01:CDS
AAGCTTCACGAAAGATGTGC+AGG 0.552502 7:+65209346 MsG0780039520.01.T01:CDS
TGCAGGAGGTGAAGGAGTCT+GGG 0.554625 7:+65209363 MsG0780039520.01.T01:CDS
AAAGTGTAGATACACTCAAA+GGG 0.554726 7:+65209674 MsG0780039520.01.T01:CDS
GGAGGTGAAGGAGTCTGGGT+TGG 0.555934 7:+65209367 MsG0780039520.01.T01:CDS
AAAAGTGTAGATACACTCAA+AGG 0.556290 7:+65209673 MsG0780039520.01.T01:CDS
CAAAGGGAAATCTGCTGCGA+AGG 0.558516 7:+65209690 MsG0780039520.01.T01:CDS
CTTTCAGAGGCCAATGAATG+TGG 0.559670 7:+65208022 MsG0780039520.01.T01:CDS
CACATTCATTGGCCTCTGAA+AGG 0.559741 7:-65208021 None:intergenic
GATTGTCCTGTAGCAGATGT+TGG 0.562417 7:-65207244 None:intergenic
AGCTGCTACAGAGAGAAGAA+TGG 0.564381 7:+65207952 MsG0780039520.01.T01:CDS
TGAAAGGCTATTAGCTGAAG+TGG 0.565476 7:-65208005 None:intergenic
TGTGGTGTTCAGTCTGAAGC+TGG 0.566521 7:+65207202 MsG0780039520.01.T01:intron
CGCAAGCTCAAGAGAAAAGG+GGG 0.566719 7:+65209107 MsG0780039520.01.T01:CDS
GAAAAGTATAGATACGCTCA+AGG 0.571373 7:+65209735 MsG0780039520.01.T01:CDS
GAAGCAAAATTGGACGTTAG+TGG 0.573636 7:+65209074 MsG0780039520.01.T01:CDS
CAGATATCCTAGAAGATGGA+TGG 0.590009 7:+65208155 MsG0780039520.01.T01:CDS
AGGGAACCTGCCTATCTCAA+AGG 0.594334 7:+65208758 MsG0780039520.01.T01:CDS
GTTCAAGACCTATTTGGCAA+AGG 0.598442 7:+65209010 MsG0780039520.01.T01:CDS
AAAAGTATAGATACGCTCAA+GGG 0.604119 7:+65209736 MsG0780039520.01.T01:CDS
TTCAGCTAATAGCCTTTCAG+AGG 0.604540 7:+65208009 MsG0780039520.01.T01:CDS
AAAGTATATATACGCTCAAG+GGG 0.615609 7:+65209800 MsG0780039520.01.T01:CDS
GCAGCGGTCACATTGTTCAA+AGG 0.617843 7:-65209186 None:intergenic
CAGTATTTGTAATTAAACGG+TGG 0.633355 7:-65208108 None:intergenic
AAAGTATAGATACGCTCAAG+GGG 0.633488 7:+65209737 MsG0780039520.01.T01:CDS
TCCCAAGTAAAGCAGAGCGA+AGG 0.640241 7:-65209421 None:intergenic
CACCTTAGAACCGCATGCAG+CGG 0.641728 7:-65209202 None:intergenic
AACAATGTGACCGCTGCATG+CGG 0.642972 7:+65209192 MsG0780039520.01.T01:CDS
CCGCAAGCTCAAGAGAAAAG+GGG 0.649476 7:+65209106 MsG0780039520.01.T01:CDS
AAAAGCTAGTGAGGTGCTTG+TGG 0.653025 7:+65209391 MsG0780039520.01.T01:CDS
CAATGAATGTGGTTTAGTCG+GGG 0.653073 7:+65208033 MsG0780039520.01.T01:CDS
AGCACCAAATTGCAAAACTG+AGG 0.657409 7:-65209048 None:intergenic
GCGGTCACATTGTTCAAAGG+TGG 0.657729 7:-65209183 None:intergenic
GGTTCCCTCTCCCAATACAA+AGG 0.674765 7:-65208743 None:intergenic
CTTCACGAAAGATGTGCAGG+AGG 0.685073 7:+65209349 MsG0780039520.01.T01:CDS
TCTGTGTATATGCATGCATG+AGG 0.715322 7:-65208136 None:intergenic
GGTTCTGTGTCTGAAAGTGA+CGG 0.718841 7:-65209150 None:intergenic
GCAAGCTCAAGAGAAAAGGG+GGG 0.737907 7:+65209108 MsG0780039520.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTAATTAAAAAATAGATTT+TGG - Chr7:65208230-65208249 None:intergenic 10.0%
!!! TTTTTATCTAAAAAATAAAC+AGG + Chr7:65207853-65207872 MsG0780039520.01.T01:intron 10.0%
!! AAAAATTATGAAGTAAATTC+TGG - Chr7:65208898-65208917 None:intergenic 15.0%
!!! AAATATAAACATTGCTATTT+TGG + Chr7:65207326-65207345 MsG0780039520.01.T01:intron 15.0%
!!! TGATAAATATTTTAATCTTC+TGG + Chr7:65207824-65207843 MsG0780039520.01.T01:intron 15.0%
!!! TGTTTTATTTTAACATTTGT+CGG + Chr7:65207747-65207766 MsG0780039520.01.T01:intron 15.0%
!!! TTTTTGTTTTTATTTCACTT+TGG - Chr7:65207643-65207662 None:intergenic 15.0%
!! GAAAAAATCAAAAACTGAAA+CGG + Chr7:65208265-65208284 MsG0780039520.01.T01:intron 20.0%
!! TATGAAGAAACAAATATTGA+AGG + Chr7:65209552-65209571 MsG0780039520.01.T01:intron 20.0%
!! TTATCTAAAAAATAAACAGG+AGG + Chr7:65207856-65207875 MsG0780039520.01.T01:intron 20.0%
! ATAAACAGGAGGAAATAAAA+AGG + Chr7:65207867-65207886 MsG0780039520.01.T01:intron 25.0%
! ATTGAAGGTAAATAAGAGAT+TGG + Chr7:65209567-65209586 MsG0780039520.01.T01:intron 25.0%
! CAAAAGATTACAGTAATTCT+GGG - Chr7:65208192-65208211 None:intergenic 25.0%
! CTGCAGTATTTGTAATTAAA+CGG - Chr7:65208114-65208133 None:intergenic 25.0%
! TAAACAGGAGGAAATAAAAA+GGG + Chr7:65207868-65207887 MsG0780039520.01.T01:intron 25.0%
!! AAAAGTATATATACGCTCAA+GGG + Chr7:65209799-65209818 MsG0780039520.01.T01:CDS 25.0%
!!! CATTTACAAATCTTTAGAAC+AGG + Chr7:65207615-65207634 MsG0780039520.01.T01:intron 25.0%
!!! GAAATCATTTTTGATAACTC+AGG + Chr7:65208708-65208727 MsG0780039520.01.T01:intron 25.0%
!!! GCATATAAACATTGCTATTT+TGG + Chr7:65207355-65207374 MsG0780039520.01.T01:intron 25.0%
!!! GGCTATTTTCAATTTTTCTT+TGG - Chr7:65209516-65209535 None:intergenic 25.0%
!!! TTTGTTGCTTTGACAAATAT+TGG + Chr7:65207178-65207197 MsG0780039520.01.T01:intron 25.0%
AAAATCAAAAACTGAAACGG+TGG + Chr7:65208268-65208287 MsG0780039520.01.T01:intron 30.0%
AAAGTATATATACGCTCAAG+GGG + Chr7:65209800-65209819 MsG0780039520.01.T01:CDS 30.0%
AAAGTGTAGATACACTCAAA+GGG + Chr7:65209674-65209693 MsG0780039520.01.T01:CDS 30.0%
AAATCTTTATAGGGTGAAAC+TGG - Chr7:65208644-65208663 None:intergenic 30.0%
AACAGACATTATCGAAACAT+CGG - Chr7:65208930-65208949 None:intergenic 30.0%
ACAGAAGATAAATTGCAGAA+TGG - Chr7:65207720-65207739 None:intergenic 30.0%
ATGGTGCTTGAAATCTTTAT+AGG - Chr7:65208654-65208673 None:intergenic 30.0%
CAGTATTTGTAATTAAACGG+TGG - Chr7:65208111-65208130 None:intergenic 30.0%
GAAAAAGACTGAAAATAACG+AGG + Chr7:65209621-65209640 MsG0780039520.01.T01:CDS 30.0%
GAACAATAAGAAAACCATTC+AGG - Chr7:65208389-65208408 None:intergenic 30.0%
GATAATGAATTTGATGCTGA+TGG + Chr7:65208869-65208888 MsG0780039520.01.T01:intron 30.0%
GCAAAAGATTACAGTAATTC+TGG - Chr7:65208193-65208212 None:intergenic 30.0%
TATCAAGTCCTTACAACTTA+CGG - Chr7:65208849-65208868 None:intergenic 30.0%
TGATGAATTACAACAGGAAA+AGG - Chr7:65208068-65208087 None:intergenic 30.0%
TGGTGCTTGAAATCTTTATA+GGG - Chr7:65208653-65208672 None:intergenic 30.0%
TGTTCATGTTTAGAAAAGCA+TGG - Chr7:65208333-65208352 None:intergenic 30.0%
! AAAAGTATAGATACGCTCAA+GGG + Chr7:65209736-65209755 MsG0780039520.01.T01:CDS 30.0%
! AAAAGTGTAGATACACTCAA+AGG + Chr7:65209673-65209692 MsG0780039520.01.T01:CDS 30.0%
! CTCTAATATAGCATGCATTT+TGG - Chr7:65207451-65207470 None:intergenic 30.0%
! GAAAAGTATATATACGCTCA+AGG + Chr7:65209798-65209817 MsG0780039520.01.T01:CDS 30.0%
! TGAAAATAACGAGGTTTTTG+AGG + Chr7:65209630-65209649 MsG0780039520.01.T01:CDS 30.0%
!! ATAATCAAAGCCTTTGAGAT+AGG - Chr7:65208771-65208790 None:intergenic 30.0%
!! CATTTTGGTCACACTAAAAA+GGG - Chr7:65207436-65207455 None:intergenic 30.0%
!! TCATTTTTGATAACTCAGGA+TGG + Chr7:65208712-65208731 MsG0780039520.01.T01:intron 30.0%
!!! AACATTGCTATTTTGGTGTT+TGG + Chr7:65207333-65207352 MsG0780039520.01.T01:intron 30.0%
AAAGTATAGATACGCTCAAG+GGG + Chr7:65209737-65209756 MsG0780039520.01.T01:CDS 35.0%
ACCTAGGAAAAGGATTAAGA+AGG + Chr7:65209236-65209255 MsG0780039520.01.T01:intron 35.0%
AGCAAGTGATGAATTACAAC+AGG - Chr7:65208074-65208093 None:intergenic 35.0%
ATCAAGTCCTTACAACTTAC+GGG - Chr7:65208848-65208867 None:intergenic 35.0%
GAAAATAGCCAATGATACTC+TGG + Chr7:65209526-65209545 MsG0780039520.01.T01:intron 35.0%
GAAGGTAAATAAGAGATTGG+AGG + Chr7:65209570-65209589 MsG0780039520.01.T01:intron 35.0%
GCATTTGCATGTTGTTATGT+AGG + Chr7:65208960-65208979 MsG0780039520.01.T01:CDS 35.0%
GCTTTGACAAATATTGGATG+TGG + Chr7:65207184-65207203 MsG0780039520.01.T01:intron 35.0%
GGTTAATAGCGATTATTTGC+TGG + Chr7:65207300-65207319 MsG0780039520.01.T01:intron 35.0%
TACACAGATATCCTAGAAGA+TGG + Chr7:65208151-65208170 MsG0780039520.01.T01:CDS 35.0%
TGATTCTGCGACATCATATA+TGG + Chr7:65207131-65207150 MsG0780039520.01.T01:intron 35.0%
TGGTTGAATTCAGTTCATCT+CGG - Chr7:65209496-65209515 None:intergenic 35.0%
TGTAAGCATCTTGCACTAAA+AGG - Chr7:65208606-65208625 None:intergenic 35.0%
TGTTGTAATTCATCACTTGC+TGG + Chr7:65208073-65208092 MsG0780039520.01.T01:CDS 35.0%
TTATATCAGTCCCTTCCATT+GGG - Chr7:65209275-65209294 None:intergenic 35.0%
TTTACTTGGGAAGGTGATTA+CGG + Chr7:65209433-65209452 MsG0780039520.01.T01:CDS 35.0%
! AGTATAAGCCTGACTTTTGA+GGG - Chr7:65207981-65208000 None:intergenic 35.0%
! ATGATATAGTCTTAGTCCCA+AGG - Chr7:65208548-65208567 None:intergenic 35.0%
! GAAAAGTATAGATACGCTCA+AGG + Chr7:65209735-65209754 MsG0780039520.01.T01:CDS 35.0%
! GAACAATGTCATGTGCATTT+TGG - Chr7:65208367-65208386 None:intergenic 35.0%
! TAGTATAAGCCTGACTTTTG+AGG - Chr7:65207982-65208001 None:intergenic 35.0%
! TCATATCTCCAGAGTATCAT+TGG - Chr7:65209537-65209556 None:intergenic 35.0%
! TCCTTCTTAATCCTTTTCCT+AGG - Chr7:65209240-65209259 None:intergenic 35.0%
! TGATATAGTCTTAGTCCCAA+GGG - Chr7:65208547-65208566 None:intergenic 35.0%
! TGTTTAGAAAAGCATGGTGA+AGG - Chr7:65208327-65208346 None:intergenic 35.0%
! TTAATCCTTTTCCTAGGTGA+AGG - Chr7:65209234-65209253 None:intergenic 35.0%
! TTTTGTTCCCGTAAGTTGTA+AGG + Chr7:65208838-65208857 MsG0780039520.01.T01:intron 35.0%
!! AAATAACGAGGTTTTTGAGG+AGG + Chr7:65209633-65209652 MsG0780039520.01.T01:CDS 35.0%
!! GATAATTTCGCACCACTTTT+TGG - Chr7:65207274-65207293 None:intergenic 35.0%
!! GCATTTTGGTCACACTAAAA+AGG - Chr7:65207437-65207456 None:intergenic 35.0%
AAGTTCCTTTGTATTGGGAG+AGG + Chr7:65208738-65208757 MsG0780039520.01.T01:CDS 40.0%
AGCACCAAATTGCAAAACTG+AGG - Chr7:65209051-65209070 None:intergenic 40.0%
AGTTCCTTTGTATTGGGAGA+GGG + Chr7:65208739-65208758 MsG0780039520.01.T01:CDS 40.0%
CAATGAATGTGGTTTAGTCG+GGG + Chr7:65208033-65208052 MsG0780039520.01.T01:CDS 40.0%
CACATGACATTGTTCCTGAA+TGG + Chr7:65208372-65208391 MsG0780039520.01.T01:intron 40.0%
CAGATATCCTAGAAGATGGA+TGG + Chr7:65208155-65208174 MsG0780039520.01.T01:CDS 40.0%
CCAATGAATGTGGTTTAGTC+GGG + Chr7:65208032-65208051 MsG0780039520.01.T01:CDS 40.0%
CTTTATAGGGTGAAACTGGT+GGG - Chr7:65208640-65208659 None:intergenic 40.0%
GAAGCAAAATTGGACGTTAG+TGG + Chr7:65209074-65209093 MsG0780039520.01.T01:CDS 40.0%
GACTGATATAACATCGCTGT+GGG + Chr7:65209284-65209303 MsG0780039520.01.T01:intron 40.0%
GCCAATGAATGTGGTTTAGT+CGG + Chr7:65208031-65208050 MsG0780039520.01.T01:CDS 40.0%
GGACAATCTCAACCAAAAAG+TGG + Chr7:65207259-65207278 MsG0780039520.01.T01:CDS 40.0%
GGCACAAGTTCCTTTGTATT+GGG + Chr7:65208733-65208752 MsG0780039520.01.T01:CDS 40.0%
GTTATATCAGTCCCTTCCAT+TGG - Chr7:65209276-65209295 None:intergenic 40.0%
GTTCAAGACCTATTTGGCAA+AGG + Chr7:65209010-65209029 MsG0780039520.01.T01:CDS 40.0%
TACAAAATCAGCGAGCACTT+AGG + Chr7:65208509-65208528 MsG0780039520.01.T01:intron 40.0%
TACATTGCCATCCATCTTCT+AGG - Chr7:65208165-65208184 None:intergenic 40.0%
TCAAAAACTGAAACGGTGGA+AGG + Chr7:65208272-65208291 MsG0780039520.01.T01:intron 40.0%
TCCTCAGATCTGGATCTTAT+CGG - Chr7:65208457-65208476 None:intergenic 40.0%
TCTGTGTATATGCATGCATG+AGG - Chr7:65208139-65208158 None:intergenic 40.0%
TCTTGCACTAAAAGGCAGAA+CGG - Chr7:65208598-65208617 None:intergenic 40.0%
TCTTTATAGGGTGAAACTGG+TGG - Chr7:65208641-65208660 None:intergenic 40.0%
TGAAAGGCTATTAGCTGAAG+TGG - Chr7:65208008-65208027 None:intergenic 40.0%
TGCCAAATAGGTCTTGAACT+CGG - Chr7:65209009-65209028 None:intergenic 40.0%
TGCGAAGGATATGGAAATTG+AGG + Chr7:65209705-65209724 MsG0780039520.01.T01:CDS 40.0%
TGGCACAAGTTCCTTTGTAT+TGG + Chr7:65208732-65208751 MsG0780039520.01.T01:CDS 40.0%
TGGTGCGAAATTATCGAAAG+AGG + Chr7:65207279-65207298 MsG0780039520.01.T01:CDS 40.0%
TTCAAAGGTGGTACAGCAAT+AGG - Chr7:65209174-65209193 None:intergenic 40.0%
TTCAGCTAATAGCCTTTCAG+AGG + Chr7:65208009-65208028 MsG0780039520.01.T01:CDS 40.0%
TTCTTCCTTCACCTAGGAAA+AGG + Chr7:65209226-65209245 MsG0780039520.01.T01:intron 40.0%
TTGAACTCGGCTTCATTTAG+AGG - Chr7:65208996-65209015 None:intergenic 40.0%
TTTATAGGGTGAAACTGGTG+GGG - Chr7:65208639-65208658 None:intergenic 40.0%
! AGAGCCTCAGTTTTGCAATT+TGG + Chr7:65209044-65209063 MsG0780039520.01.T01:CDS 40.0%
! AGGATTTTATGCTTCCCCTT+GGG + Chr7:65208529-65208548 MsG0780039520.01.T01:intron 40.0%
! GAATTTTGCTGCATGTCTCT+CGG - Chr7:65208810-65208829 None:intergenic 40.0%
! GATATAGTCTTAGTCCCAAG+GGG - Chr7:65208546-65208565 None:intergenic 40.0%
! TAGGATTTTATGCTTCCCCT+TGG + Chr7:65208528-65208547 MsG0780039520.01.T01:intron 40.0%
! TTCTCTAGCCTTTGCCAAAT+AGG - Chr7:65209021-65209040 None:intergenic 40.0%
AAGACTTGTGTCCCAATGGA+AGG + Chr7:65209261-65209280 MsG0780039520.01.T01:intron 45.0%
AAGCTTCACGAAAGATGTGC+AGG + Chr7:65209346-65209365 MsG0780039520.01.T01:CDS 45.0%
AGAAAAGAGAGCAGCTGCTA+GGG + Chr7:65207907-65207926 MsG0780039520.01.T01:CDS 45.0%
AGAAAAGGGGGGAAACTCAA+AGG + Chr7:65209119-65209138 MsG0780039520.01.T01:CDS 45.0%
AGACTTGTGTCCCAATGGAA+GGG + Chr7:65209262-65209281 MsG0780039520.01.T01:intron 45.0%
AGCCGAGTTCAAGACCTATT+TGG + Chr7:65209004-65209023 MsG0780039520.01.T01:CDS 45.0%
AGCTGCTACAGAGAGAAGAA+TGG + Chr7:65207952-65207971 MsG0780039520.01.T01:CDS 45.0%
ATATAACATCGCTGTGGGAC+AGG + Chr7:65209289-65209308 MsG0780039520.01.T01:intron 45.0%
ATCCGCAAGCTCAAGAGAAA+AGG + Chr7:65209104-65209123 MsG0780039520.01.T01:CDS 45.0%
ATTGCTCCAACATCTGCTAC+AGG + Chr7:65207238-65207257 MsG0780039520.01.T01:CDS 45.0%
CCCGACTAAACCACATTCAT+TGG - Chr7:65208035-65208054 None:intergenic 45.0%
CTTTCAGAGGCCAATGAATG+TGG + Chr7:65208022-65208041 MsG0780039520.01.T01:CDS 45.0%
CTTTCATCCCTAGCCAATCA+AGG - Chr7:65208483-65208502 None:intergenic 45.0%
GAAACGGTGGAAGGAATGAT+TGG + Chr7:65208281-65208300 MsG0780039520.01.T01:intron 45.0%
GAAATCTGCTGCGAAGGATA+TGG + Chr7:65209696-65209715 MsG0780039520.01.T01:CDS 45.0%
GACAGGAGGTTTGATGGAAT+GGG + Chr7:65209306-65209325 MsG0780039520.01.T01:intron 45.0%
GACCAATTCAGAGCTGTACT+GGG + Chr7:65209455-65209474 MsG0780039520.01.T01:intron 45.0%
GATTGTCCTGTAGCAGATGT+TGG - Chr7:65207247-65207266 None:intergenic 45.0%
GGACTGATATAACATCGCTG+TGG + Chr7:65209283-65209302 MsG0780039520.01.T01:intron 45.0%
GGTTCTGTGTCTGAAAGTGA+CGG - Chr7:65209153-65209172 None:intergenic 45.0%
TCCGCAAGCTCAAGAGAAAA+GGG + Chr7:65209105-65209124 MsG0780039520.01.T01:CDS 45.0%
TTATAGGGTGAAACTGGTGG+GGG - Chr7:65208638-65208657 None:intergenic 45.0%
! AAAAGCTAGTGAGGTGCTTG+TGG + Chr7:65209391-65209410 MsG0780039520.01.T01:CDS 45.0%
! ATCTGGATCTTATCGGCTGA+TGG - Chr7:65208450-65208469 None:intergenic 45.0%
! CACATTCATTGGCCTCTGAA+AGG - Chr7:65208024-65208043 None:intergenic 45.0%
! GGAGCATCTAATCTCAGCAA+TGG - Chr7:65208429-65208448 None:intergenic 45.0%
! GGAGGAAATAAAAAGGGCAC+AGG + Chr7:65207874-65207893 MsG0780039520.01.T01:intron 45.0%
! GGTTTGATGGAATGGGTTTG+TGG + Chr7:65209313-65209332 MsG0780039520.01.T01:intron 45.0%
! TGGGTTGGAAAAAGCTAGTG+AGG + Chr7:65209382-65209401 MsG0780039520.01.T01:CDS 45.0%
!! GTTTTTGAGGAGGAGGTTGT+TGG + Chr7:65209643-65209662 MsG0780039520.01.T01:CDS 45.0%
!! TAACGAGGTTTTTGAGGAGG+AGG + Chr7:65209636-65209655 MsG0780039520.01.T01:CDS 45.0%
!! TCAAAGCCTTTGAGATAGGC+AGG - Chr7:65208767-65208786 None:intergenic 45.0%
!! TGGTGCTGCTGAAGCAAAAT+TGG + Chr7:65209064-65209083 MsG0780039520.01.T01:CDS 45.0%
!!! AGTGCTCGCTGATTTTGTAG+CGG - Chr7:65208508-65208527 None:intergenic 45.0%
!! TTTCTAATTAAAAAAAAAAA+TGG - Chr7:65208673-65208692 None:intergenic 5.0%
AAAGGGGGGAAACTCAAAGG+AGG + Chr7:65209122-65209141 MsG0780039520.01.T01:CDS 50.0%
AACAATGTGACCGCTGCATG+CGG + Chr7:65209192-65209211 MsG0780039520.01.T01:CDS 50.0%
AAGGGGGGAAACTCAAAGGA+GGG + Chr7:65209123-65209142 MsG0780039520.01.T01:CDS 50.0%
AATGGCTGCCCTCAAAAGTC+AGG + Chr7:65207970-65207989 MsG0780039520.01.T01:CDS 50.0%
ACAGACTGCTCTGACTCAGT+TGG + Chr7:65209597-65209616 MsG0780039520.01.T01:CDS 50.0%
AGCCTTCGCTCTGCTTTACT+TGG + Chr7:65209419-65209438 MsG0780039520.01.T01:CDS 50.0%
AGGCAGAACGGTTGCATGAT+CGG - Chr7:65208586-65208605 None:intergenic 50.0%
AGGGAACCTGCCTATCTCAA+AGG + Chr7:65208758-65208777 MsG0780039520.01.T01:CDS 50.0%
AGGTGGTTCTTCCTTCACCT+AGG + Chr7:65209220-65209239 MsG0780039520.01.T01:intron 50.0%
ATCAAGGAGGTCCTCAGATC+TGG - Chr7:65208467-65208486 None:intergenic 50.0%
CAAAGGGAAATCTGCTGCGA+AGG + Chr7:65209690-65209709 MsG0780039520.01.T01:CDS 50.0%
CCGCAAGCTCAAGAGAAAAG+GGG + Chr7:65209106-65209125 MsG0780039520.01.T01:CDS 50.0%
CGCAAGCTCAAGAGAAAAGG+GGG + Chr7:65209107-65209126 MsG0780039520.01.T01:CDS 50.0%
CTTCACGAAAGATGTGCAGG+AGG + Chr7:65209349-65209368 MsG0780039520.01.T01:CDS 50.0%
GAAAGATGTGCAGGAGGTGA+AGG + Chr7:65209355-65209374 MsG0780039520.01.T01:CDS 50.0%
GAGAAAAGAGAGCAGCTGCT+AGG + Chr7:65207906-65207925 MsG0780039520.01.T01:CDS 50.0%
GATCTGAGGACCTCCTTGAT+TGG + Chr7:65208467-65208486 MsG0780039520.01.T01:intron 50.0%
GCAAGCTCAAGAGAAAAGGG+GGG + Chr7:65209108-65209127 MsG0780039520.01.T01:CDS 50.0%
GCAATCTGCTGCGAAGGATA+TGG + Chr7:65209822-65209841 MsG0780039520.01.T01:CDS 50.0%
GCAGCGGTCACATTGTTCAA+AGG - Chr7:65209189-65209208 None:intergenic 50.0%
GCCGATAAGATCCAGATCTG+AGG + Chr7:65208453-65208472 MsG0780039520.01.T01:intron 50.0%
GCCTTCGCTCTGCTTTACTT+GGG + Chr7:65209420-65209439 MsG0780039520.01.T01:CDS 50.0%
GCGGTCACATTGTTCAAAGG+TGG - Chr7:65209186-65209205 None:intergenic 50.0%
GGACAGGAGGTTTGATGGAA+TGG + Chr7:65209305-65209324 MsG0780039520.01.T01:intron 50.0%
GGACCAATTCAGAGCTGTAC+TGG + Chr7:65209454-65209473 MsG0780039520.01.T01:intron 50.0%
GGAGAAGACTTGTGTCCCAA+TGG + Chr7:65209257-65209276 MsG0780039520.01.T01:intron 50.0%
GGTTCCCTCTCCCAATACAA+AGG - Chr7:65208746-65208765 None:intergenic 50.0%
TCATCCCTAGCCAATCAAGG+AGG - Chr7:65208480-65208499 None:intergenic 50.0%
TCCCAAGTAAAGCAGAGCGA+AGG - Chr7:65209424-65209443 None:intergenic 50.0%
TCGCTCTGCTTTACTTGGGA+AGG + Chr7:65209424-65209443 MsG0780039520.01.T01:CDS 50.0%
! AGGACCTCCTTGATTGGCTA+GGG + Chr7:65208473-65208492 MsG0780039520.01.T01:intron 50.0%
! CCCCTTTTCTCTTGAGCTTG+CGG - Chr7:65209109-65209128 None:intergenic 50.0%
! TGTGGTGTTCAGTCTGAAGC+TGG + Chr7:65207202-65207221 MsG0780039520.01.T01:intron 50.0%
!! GTCCCAGTACAGCTCTGAAT+TGG - Chr7:65209460-65209479 None:intergenic 50.0%
CACCTTAGAACCGCATGCAG+CGG - Chr7:65209205-65209224 None:intergenic 55.0%
CTGTGGGACAGGAGGTTTGA+TGG + Chr7:65209300-65209319 MsG0780039520.01.T01:intron 55.0%
GCAGTCTGCTGCGAAGGATA+TGG + Chr7:65209759-65209778 MsG0780039520.01.T01:CDS 55.0%
TAACATCGCTGTGGGACAGG+AGG + Chr7:65209292-65209311 MsG0780039520.01.T01:intron 55.0%
TGCAGGAGGTGAAGGAGTCT+GGG + Chr7:65209363-65209382 MsG0780039520.01.T01:CDS 55.0%
! GAGGACCTCCTTGATTGGCT+AGG + Chr7:65208472-65208491 MsG0780039520.01.T01:intron 55.0%
CAAGGGGCAATCTGCTGCGA+AGG + Chr7:65209816-65209835 MsG0780039520.01.T01:CDS 60.0%
GACCGCTGCATGCGGTTCTA+AGG + Chr7:65209200-65209219 MsG0780039520.01.T01:intron 60.0%
GGAGGTGAAGGAGTCTGGGT+TGG + Chr7:65209367-65209386 MsG0780039520.01.T01:CDS 60.0%
GTGCAGGAGGTGAAGGAGTC+TGG + Chr7:65209362-65209381 MsG0780039520.01.T01:CDS 60.0%
!! CGCTGCATGCGGTTCTAAGG+TGG + Chr7:65209203-65209222 MsG0780039520.01.T01:intron 60.0%
CAAGGGGCAGTCTGCTGCGA+AGG + Chr7:65209753-65209772 MsG0780039520.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 65207105 65209870 65207105 ID=MsG0780039520.01;Name=MsG0780039520.01
Chr7 mRNA 65207105 65209870 65207105 ID=MsG0780039520.01.T01;Parent=MsG0780039520.01;Name=MsG0780039520.01.T01;_AED=0.49;_eAED=0.82;_QI=0|0|0|1|1|1|7|0|408
Chr7 exon 65207105 65207107 65207105 ID=MsG0780039520.01.T01:exon:10176;Parent=MsG0780039520.01.T01
Chr7 exon 65207214 65207300 65207214 ID=MsG0780039520.01.T01:exon:10177;Parent=MsG0780039520.01.T01
Chr7 exon 65207875 65208200 65207875 ID=MsG0780039520.01.T01:exon:10178;Parent=MsG0780039520.01.T01
Chr7 exon 65208730 65208854 65208730 ID=MsG0780039520.01.T01:exon:10179;Parent=MsG0780039520.01.T01
Chr7 exon 65208955 65209213 65208955 ID=MsG0780039520.01.T01:exon:10180;Parent=MsG0780039520.01.T01
Chr7 exon 65209340 65209469 65209340 ID=MsG0780039520.01.T01:exon:10181;Parent=MsG0780039520.01.T01
Chr7 exon 65209574 65209870 65209574 ID=MsG0780039520.01.T01:exon:10182;Parent=MsG0780039520.01.T01
Chr7 CDS 65207105 65207107 65207105 ID=MsG0780039520.01.T01:cds;Parent=MsG0780039520.01.T01
Chr7 CDS 65207214 65207300 65207214 ID=MsG0780039520.01.T01:cds;Parent=MsG0780039520.01.T01
Chr7 CDS 65207875 65208200 65207875 ID=MsG0780039520.01.T01:cds;Parent=MsG0780039520.01.T01
Chr7 CDS 65208730 65208854 65208730 ID=MsG0780039520.01.T01:cds;Parent=MsG0780039520.01.T01
Chr7 CDS 65208955 65209213 65208955 ID=MsG0780039520.01.T01:cds;Parent=MsG0780039520.01.T01
Chr7 CDS 65209340 65209469 65209340 ID=MsG0780039520.01.T01:cds;Parent=MsG0780039520.01.T01
Chr7 CDS 65209574 65209870 65209574 ID=MsG0780039520.01.T01:cds;Parent=MsG0780039520.01.T01
Gene Sequence

>MsG0780039520.01.T01

ATGTCTGAAGCTGGTGAAAAACAAGTGATTGCTCCAACATCTGCTACAGGACAATCTCAACCAAAAAGTGGTGCGAAATTATCGAAAGAGGAGGAAATAAAAAGGGCACAGGATGCTGAAAGAGAAAAGAGAGCAGCTGCTAGGGATGCAGAAAGAGAAAAGAGAGCAGCTGCTACAGAGAGAAGAATGGCTGCCCTCAAAAGTCAGGCTTATACTACAACCACTTCAGCTAATAGCCTTTCAGAGGCCAATGAATGTGGTTTAGTCGGGGATACAACATCCTTTTCCTGTTGTAATTCATCACTTGCTGGTAAAGTTTCTTTCCACCGTTTAATTACAAATACTGCAGCACCTCATGCATGCATATACACAGATATCCTAGAAGATGGATGGCAATGTATTTTCCCAGAATTACTGATGGCACAAGTTCCTTTGTATTGGGAGAGGGAACCTGCCTATCTCAAAGGCTTTGATTATGATAAGTTAATCGAATCCGAGAGACATGCAGCAAAATTCTTAGAGACTTTTGTTCCCGTAAGTTCTTGTGCATTTGCATGTTGTTATGTAGGAAGAATGTCTCCTCTAAATGAAGCCGAGTTCAAGACCTATTTGGCAAAGGCTAGAGAAAAGAGAGCCTCAGTTTTGCAATTTGGTGCTGCTGAAGCAAAATTGGACGTTAGTGGTGTTACAATCCGCAAGCTCAAGAGAAAAGGGGGGAAACTCAAAGGAGGGATCACCGTCACTTTCAGACACAGAACCTATTGCTGTACCACCTTTGAACAATGTGACCGCTGCATGCGCAATCTAAGCTTCACGAAAGATGTGCAGGAGGTGAAGGAGTCTGGGTTGGAAAAAGCTAGTGAGGTGCTTGTGGCGTACAGCCTTCGCTCTGCTTTACTTGGGAAGGTGATTACGGACCAATTCAGAGCTGTAAATAAGAGATTGGAGGAAGAACAGACTGCTCTGACTCAGTTGGAGAAAAAGACTGAAAATAACGAGGTTTTTGAGGAGGAGGTTGTTGGCTTGAAGAAAAGTGTAGATACACTCAAAGGGAAATCTGCTGCGAAGGATATGGAAATTGAGGATTTGAAGAAAAGTATAGATACGCTCAAGGGGCAGTCTGCTGCGAAGGATATGGAAATTGAGGATTTGAAGAAAAGTATATATACGCTCAAGGGGCAATCTGCTGCGAAGGATATGGAAATTGAGGATTTGAAGAAAGCGTAG

Protein sequence

>MsG0780039520.01.T01

MSEAGEKQVIAPTSATGQSQPKSGAKLSKEEEIKRAQDAEREKRAAARDAEREKRAAATERRMAALKSQAYTTTTSANSLSEANECGLVGDTTSFSCCNSSLAGKVSFHRLITNTAAPHACIYTDILEDGWQCIFPELLMAQVPLYWEREPAYLKGFDYDKLIESERHAAKFLETFVPVSSCAFACCYVGRMSPLNEAEFKTYLAKAREKRASVLQFGAAEAKLDVSGVTIRKLKRKGGKLKGGITVTFRHRTYCCTTFEQCDRCMRNLSFTKDVQEVKESGLEKASEVLVAYSLRSALLGKVITDQFRAVNKRLEEEQTALTQLEKKTENNEVFEEEVVGLKKSVDTLKGKSAAKDMEIEDLKKSIDTLKGQSAAKDMEIEDLKKSIYTLKGQSAAKDMEIEDLKKA*