Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009662.01.T01 | AAM18948.1 | 95.161 | 186 | 9 | 0 | 8 | 193 | 32 | 217 | 7.29E-92 | 277 |
| MsG0280009662.01.T01 | AAM18948.1 | 61.429 | 70 | 27 | 0 | 86 | 155 | 28 | 97 | 4.62E-15 | 81.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009662.01.T01 | Q8S2U4 | 95.161 | 186 | 9 | 0 | 8 | 193 | 32 | 217 | 3.48e-92 | 277 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048202.01 | MsG0280009662.01 | 0.822395 | 2.424275e-53 | 2.026796e-50 |
| MsG0080048986.01 | MsG0280009662.01 | -0.830556 | 2.747377e-55 | 2.904424e-52 |
| MsG0080049066.01 | MsG0280009662.01 | -0.814739 | 1.321393e-51 | 8.938752e-49 |
| MsG0080049133.01 | MsG0280009662.01 | -0.863193 | 2.965456e-64 | 8.913603e-61 |
| MsG0180000322.01 | MsG0280009662.01 | -0.828190 | 1.031957e-54 | 1.018349e-51 |
| MsG0180002099.01 | MsG0280009662.01 | -0.811605 | 6.439139e-51 | 4.003286e-48 |
| MsG0180002425.01 | MsG0280009662.01 | -0.812884 | 3.387019e-51 | 2.178908e-48 |
| MsG0180002426.01 | MsG0280009662.01 | -0.802217 | 6.228760e-49 | 3.033995e-46 |
| MsG0180003757.01 | MsG0280009662.01 | -0.831529 | 1.585217e-55 | 1.724986e-52 |
| MsG0180004502.01 | MsG0280009662.01 | -0.819036 | 1.433755e-52 | 1.091167e-49 |
| MsG0180004737.01 | MsG0280009662.01 | -0.800529 | 1.380971e-48 | 6.444915e-46 |
| MsG0180004747.01 | MsG0280009662.01 | -0.819352 | 1.214999e-52 | 9.326590e-50 |
| MsG0180004773.01 | MsG0280009662.01 | -0.809993 | 1.437522e-50 | 8.565138e-48 |
| MsG0180005016.01 | MsG0280009662.01 | -0.809377 | 1.950304e-50 | 1.143252e-47 |
| MsG0180005328.01 | MsG0280009662.01 | 0.812315 | 4.509743e-51 | 2.857983e-48 |
| MsG0180006212.01 | MsG0280009662.01 | -0.827727 | 1.333696e-54 | 1.298417e-51 |
| MsG0180006227.01 | MsG0280009662.01 | -0.825034 | 5.840531e-54 | 5.263075e-51 |
| MsG0280006381.01 | MsG0280009662.01 | -0.802066 | 6.691140e-49 | 3.246725e-46 |
| MsG0280007649.01 | MsG0280009662.01 | -0.817065 | 3.999870e-52 | 2.883403e-49 |
| MsG0280007650.01 | MsG0280009662.01 | -0.808247 | 3.402105e-50 | 1.935595e-47 |
| MsG0280007916.01 | MsG0280009662.01 | 0.804411 | 2.188016e-49 | 1.127334e-46 |
| MsG0280008912.01 | MsG0280009662.01 | -0.838619 | 2.582426e-57 | 3.478193e-54 |
| MsG0280009662.01 | MsG0280009742.01 | -0.805489 | 1.302179e-49 | 6.898319e-47 |
| MsG0280009662.01 | MsG0280011301.01 | -0.811438 | 7.001758e-51 | 4.334232e-48 |
| MsG0280009662.01 | MsG0380012148.01 | -0.801807 | 7.562412e-49 | 3.645441e-46 |
| MsG0280009662.01 | MsG0380012281.01 | -0.809934 | 1.480636e-50 | 8.808041e-48 |
| MsG0280009662.01 | MsG0380013114.01 | -0.835202 | 1.924690e-56 | 2.337111e-53 |
| MsG0280009662.01 | MsG0380013473.01 | -0.819771 | 9.751495e-53 | 7.574599e-50 |
| MsG0280009662.01 | MsG0380013506.01 | -0.819805 | 9.577369e-53 | 7.446312e-50 |
| MsG0280009662.01 | MsG0380015201.01 | -0.823040 | 1.715647e-53 | 1.460822e-50 |
| MsG0280009662.01 | MsG0380015654.01 | -0.837942 | 3.859664e-57 | 5.092065e-54 |
| MsG0280009662.01 | MsG0380015752.01 | -0.827564 | 1.458958e-54 | 1.413578e-51 |
| MsG0280009662.01 | MsG0380015971.01 | -0.840625 | 7.766479e-58 | 1.112696e-54 |
| MsG0280009662.01 | MsG0380016056.01 | -0.814371 | 1.593775e-51 | 1.067490e-48 |
| MsG0280009662.01 | MsG0380016166.01 | -0.804949 | 1.689670e-49 | 8.828140e-47 |
| MsG0280009662.01 | MsG0380016889.01 | -0.805711 | 1.169752e-49 | 6.232610e-47 |
| MsG0280009662.01 | MsG0380017405.01 | -0.807298 | 5.412199e-50 | 3.003612e-47 |
| MsG0280009662.01 | MsG0380017812.01 | -0.819535 | 1.103905e-52 | 8.518127e-50 |
| MsG0280009662.01 | MsG0380017895.01 | -0.806730 | 7.138353e-50 | 3.903539e-47 |
| MsG0280009662.01 | MsG0380017928.01 | -0.812304 | 4.535008e-51 | 2.873065e-48 |
| MsG0280009662.01 | MsG0480018201.01 | -0.821632 | 3.640788e-53 | 2.978107e-50 |
| MsG0280009662.01 | MsG0480018203.01 | -0.807846 | 4.140604e-50 | 2.330795e-47 |
| MsG0280009662.01 | MsG0480018463.01 | -0.852229 | 5.293272e-61 | 1.098718e-57 |
| MsG0280009662.01 | MsG0480018628.01 | -0.838519 | 2.740927e-57 | 3.680262e-54 |
| MsG0280009662.01 | MsG0480019304.01 | 0.821496 | 3.915644e-53 | 3.190654e-50 |
| MsG0280009662.01 | MsG0480020411.01 | 0.806206 | 9.206122e-50 | 4.967612e-47 |
| MsG0280009662.01 | MsG0480021327.01 | -0.804335 | 2.269377e-49 | 1.167005e-46 |
| MsG0280009662.01 | MsG0480022655.01 | 0.831649 | 1.480701e-55 | 1.616922e-52 |
| MsG0280009662.01 | MsG0480023152.01 | -0.812821 | 3.494863e-51 | 2.244466e-48 |
| MsG0280009662.01 | MsG0480023242.01 | -0.813293 | 2.753969e-51 | 1.791377e-48 |
| MsG0280009662.01 | MsG0480023481.01 | -0.803280 | 3.758898e-49 | 1.881215e-46 |
| MsG0280009662.01 | MsG0480023695.01 | -0.855652 | 5.462736e-62 | 1.270268e-58 |
| MsG0280009662.01 | MsG0580024678.01 | -0.812738 | 3.645502e-51 | 2.336307e-48 |
| MsG0280009662.01 | MsG0580025105.01 | -0.813787 | 2.145087e-51 | 1.414116e-48 |
| MsG0280009662.01 | MsG0580025480.01 | -0.830563 | 2.737576e-55 | 2.894644e-52 |
| MsG0280009662.01 | MsG0580027797.01 | 0.810325 | 1.219525e-50 | 7.328989e-48 |
| MsG0280009662.01 | MsG0580030197.01 | -0.806888 | 6.608356e-50 | 3.628549e-47 |
| MsG0280009662.01 | MsG0580030237.01 | -0.807752 | 4.334706e-50 | 2.434190e-47 |
| MsG0280009662.01 | MsG0680034229.01 | -0.819774 | 9.731994e-53 | 7.560186e-50 |
| MsG0280009662.01 | MsG0680035584.01 | -0.811005 | 8.689986e-51 | 5.318727e-48 |
| MsG0280009662.01 | MsG0780035993.01 | 0.827202 | 1.782397e-54 | 1.709025e-51 |
| MsG0280009662.01 | MsG0780037698.01 | -0.820330 | 7.262870e-53 | 5.729240e-50 |
| MsG0280009662.01 | MsG0780038047.01 | -0.805983 | 1.025466e-49 | 5.502036e-47 |
| MsG0280009662.01 | MsG0780039836.01 | -0.812285 | 4.578762e-51 | 2.899437e-48 |
| MsG0280009662.01 | MsG0780039838.01 | -0.822544 | 2.237724e-53 | 1.878781e-50 |
| MsG0280009662.01 | MsG0780039839.01 | -0.839644 | 1.400932e-57 | 1.946828e-54 |
| MsG0280009662.01 | MsG0780041254.01 | -0.814971 | 1.173977e-51 | 7.991310e-49 |
| MsG0280009662.01 | MsG0780041620.01 | -0.823927 | 1.064193e-53 | 9.290750e-51 |
| MsG0280009662.01 | MsG0780041720.01 | -0.804465 | 2.132785e-49 | 1.100402e-46 |
| MsG0280009662.01 | MsG0780041783.01 | -0.820645 | 6.146832e-53 | 4.891296e-50 |
| MsG0280009662.01 | MsG0780041809.01 | -0.802877 | 4.554833e-49 | 2.256242e-46 |
| MsG0280009662.01 | MsG0880041855.01 | -0.825633 | 4.215087e-54 | 3.863402e-51 |
| MsG0280009662.01 | MsG0880042858.01 | -0.837620 | 4.669600e-57 | 6.100193e-54 |
| MsG0280009662.01 | MsG0880044339.01 | -0.845623 | 3.619232e-59 | 6.067045e-56 |
| MsG0280009662.01 | MsG0880045369.01 | -0.800669 | 1.293414e-48 | 6.057920e-46 |
| MsG0280009662.01 | MsG0880045385.01 | -0.801758 | 7.741309e-49 | 3.726849e-46 |
| MsG0280009662.01 | MsG0880046105.01 | -0.837853 | 4.067871e-57 | 5.352451e-54 |
| MsG0280009662.01 | MsG0880046219.01 | -0.801504 | 8.726523e-49 | 4.174478e-46 |
| MsG0280009662.01 | MsG0880046341.01 | -0.811588 | 6.495796e-51 | 4.036707e-48 |
| MsG0280009662.01 | MsG0880046469.01 | -0.805228 | 1.477140e-49 | 7.772659e-47 |
| MsG0280009662.01 | MsG0880047493.01 | 0.801363 | 9.328825e-49 | 4.446773e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280009662.01.T01 | MTR_2g069273 | 84.293 | 191 | 25 | 1 | 8 | 193 | 32 | 222 | 3.51e-89 | 261 |
| MsG0280009662.01.T01 | MTR_2g069273 | 60.563 | 71 | 28 | 0 | 85 | 155 | 27 | 97 | 3.08e-19 | 82.0 |
| MsG0280009662.01.T01 | MTR_2g069273 | 57.868 | 197 | 32 | 3 | 48 | 193 | 30 | 226 | 4.92e-58 | 182 |
| MsG0280009662.01.T01 | MTR_2g069283 | 67.416 | 89 | 29 | 0 | 85 | 173 | 27 | 115 | 3.40e-31 | 110 |
| MsG0280009662.01.T01 | MTR_2g069283 | 52.688 | 93 | 42 | 1 | 48 | 138 | 30 | 122 | 2.91e-17 | 74.7 |
| MsG0280009662.01.T01 | MTR_2g069283 | 51.852 | 81 | 39 | 0 | 9 | 89 | 33 | 113 | 9.01e-15 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 69 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGACTGGGGAGGATCATTT+TGG | 0.168883 | 2:-55912989 | MsG0280009662.01.T01:CDS |
| GAGACTGGGGAGGCTCATTT+TGG | 0.192844 | 2:-55912135 | MsG0280009662.01.T01:CDS |
| GTGATTGGGGAGGCTCATTC+TGG | 0.210600 | 2:-55912261 | MsG0280009662.01.T01:CDS |
| AACCTTCTGTTACACTTTCA+TGG | 0.231090 | 2:+55912161 | None:intergenic |
| GAGATTGGGGAGGCTCATTC+TGG | 0.253976 | 2:-55913220 | MsG0280009662.01.T01:CDS |
| CTAGACATGAAGTAAGATTT+AGG | 0.295879 | 2:+55911854 | None:intergenic |
| ATGTAGGAGTCTTATTTCTA+TGG | 0.316728 | 2:+55911918 | None:intergenic |
| AACTGATGGTTGGCGTGATT+GGG | 0.322774 | 2:-55912275 | MsG0280009662.01.T01:CDS |
| TAACAGAAGGTTGGAGAGAC+TGG | 0.323117 | 2:-55912150 | MsG0280009662.01.T01:CDS |
| GGTAAAGGTGCAAAAGAAAA+AGG | 0.335620 | 2:-55912190 | MsG0280009662.01.T01:CDS |
| GAATTGATAGTTGGCGAGAC+TGG | 0.348080 | 2:-55913004 | MsG0280009662.01.T01:CDS |
| AATTGATGGTTGGCGAGATT+GGG | 0.349160 | 2:-55913234 | MsG0280009662.01.T01:CDS |
| GAATTGATGGTTGGCGAGAT+TGG | 0.352145 | 2:-55913235 | MsG0280009662.01.T01:CDS |
| ATGATTCCTAAAATATTTGA+TGG | 0.357317 | 2:-55914023 | MsG0280009662.01.T01:intron |
| GAACTGATGGTTGGCGTGAT+TGG | 0.362389 | 2:-55912276 | MsG0280009662.01.T01:CDS |
| AAAACAAAAGTAGGAATTGA+TGG | 0.406810 | 2:-55913248 | MsG0280009662.01.T01:CDS |
| GGTGGAGATTTGAATTAGAA+AGG | 0.422862 | 2:-55912013 | MsG0280009662.01.T01:exon |
| GATGAGAAAGAGAATGTTGA+TGG | 0.429051 | 2:-55912109 | MsG0280009662.01.T01:CDS |
| GAAGATGGACAAGAGAATAA+TGG | 0.430348 | 2:-55913197 | MsG0280009662.01.T01:CDS |
| AGAAAGGTTTGAGAGGTTTG+AGG | 0.431253 | 2:-55911997 | MsG0280009662.01.T01:three_prime_UTR |
| GAAGATGGACAAAAGAATAA+TGG | 0.456271 | 2:-55912238 | MsG0280009662.01.T01:CDS |
| AGTGGAAGAGACAACATAGA+TGG | 0.458620 | 2:-55912043 | MsG0280009662.01.T01:CDS |
| ATTGATGGTTGGCGAGATTG+GGG | 0.476720 | 2:-55913233 | MsG0280009662.01.T01:CDS |
| TGATTGGGGAGGCTCATTCT+GGG | 0.483330 | 2:-55912260 | MsG0280009662.01.T01:CDS |
| AGAGAATAATGGTGGAGGTG+AGG | 0.487583 | 2:-55912955 | MsG0280009662.01.T01:CDS |
| AATGGTGGAGGTGAGGAAGA+AGG | 0.488281 | 2:-55912948 | MsG0280009662.01.T01:CDS |
| AATTGATAGTTGGCGAGACT+GGG | 0.496285 | 2:-55913003 | MsG0280009662.01.T01:CDS |
| AGATTGGGGAGGCTCATTCT+GGG | 0.497139 | 2:-55913219 | MsG0280009662.01.T01:CDS |
| AAAGGAAGTGCACATGGAAA+AGG | 0.498745 | 2:-55912079 | MsG0280009662.01.T01:CDS |
| AAAGAATCCAAAACAAAAGT+AGG | 0.499512 | 2:-55913257 | MsG0280009662.01.T01:CDS |
| GGATCTGGAGAAGAGAATAA+TGG | 0.501956 | 2:-55912966 | MsG0280009662.01.T01:CDS |
| AGGTTGCTCTAATAACGAAA+TGG | 0.505353 | 2:-55911957 | MsG0280009662.01.T01:three_prime_UTR |
| TTGAATTAGAAAGGTTTGAG+AGG | 0.518551 | 2:-55912004 | MsG0280009662.01.T01:exon |
| AACAGAAGGTTGGAGAGACT+GGG | 0.521661 | 2:-55912149 | MsG0280009662.01.T01:CDS |
| GGAGGCTCATTCTGGGAAGA+TGG | 0.522549 | 2:-55912253 | MsG0280009662.01.T01:CDS |
| GGAGGCTCATTCTGGGAAGA+TGG | 0.522549 | 2:-55913212 | MsG0280009662.01.T01:CDS |
| AAAGGTGAAGACAGCGAAAG+TGG | 0.528063 | 2:-55912061 | MsG0280009662.01.T01:CDS |
| GTAGTATAATCTAAAGATGT+CGG | 0.544484 | 2:+55911783 | None:intergenic |
| GGGATACAATACACACATGT+AGG | 0.546764 | 2:+55911902 | None:intergenic |
| ACTGATGGTTGGCGTGATTG+GGG | 0.549770 | 2:-55912274 | MsG0280009662.01.T01:CDS |
| ACAGAAGGTGGACAAGGTAA+AGG | 0.550489 | 2:-55912205 | MsG0280009662.01.T01:CDS |
| CAAAAGTAGGAATTGATGGT+TGG | 0.551204 | 2:-55913244 | MsG0280009662.01.T01:CDS |
| GGAGAAGAGAATAATGGTGG+AGG | 0.557925 | 2:-55912960 | MsG0280009662.01.T01:CDS |
| AAAGAAGGTGGAGAAAGTAA+AGG | 0.562819 | 2:-55913164 | MsG0280009662.01.T01:intron |
| ATGAAAGTGTAACAGAAGGT+TGG | 0.567802 | 2:-55912159 | MsG0280009662.01.T01:CDS |
| AATGTTGATGGAATAAACAA+AGG | 0.572644 | 2:-55912097 | MsG0280009662.01.T01:CDS |
| TGCTCTAATAACGAAATGGA+GGG | 0.577511 | 2:-55911953 | MsG0280009662.01.T01:three_prime_UTR |
| GGTGAAAGTGACAAAGAAGG+TGG | 0.588172 | 2:-55913176 | MsG0280009662.01.T01:CDS |
| ATAAACAAAGGAAGTGCACA+TGG | 0.591872 | 2:-55912085 | MsG0280009662.01.T01:CDS |
| AAATATATAACATGAAATTG+TGG | 0.595056 | 2:+55911728 | None:intergenic |
| GTCCATGAAAGTGTAACAGA+AGG | 0.596678 | 2:-55912163 | MsG0280009662.01.T01:CDS |
| GGTGAGGAAGAAGGCAGACA+AGG | 0.598128 | 2:-55912939 | MsG0280009662.01.T01:intron |
| TTGCTCTAATAACGAAATGG+AGG | 0.600988 | 2:-55911954 | MsG0280009662.01.T01:three_prime_UTR |
| GATGGACAAAAGAATAATGG+TGG | 0.601830 | 2:-55912235 | MsG0280009662.01.T01:CDS |
| TCTGGAGAAGAGAATAATGG+TGG | 0.606280 | 2:-55912963 | MsG0280009662.01.T01:CDS |
| AATGGTGAAAGTGACAAAGA+AGG | 0.608395 | 2:-55913179 | MsG0280009662.01.T01:CDS |
| GATGGTTGGCGTGATTGGGG+AGG | 0.633075 | 2:-55912271 | MsG0280009662.01.T01:CDS |
| GATGGTTGGCGAGATTGGGG+AGG | 0.634413 | 2:-55913230 | MsG0280009662.01.T01:CDS |
| AACATAGATGGATACAGTGG+TGG | 0.650817 | 2:-55912031 | MsG0280009662.01.T01:CDS |
| GATAGTTGGCGAGACTGGGG+AGG | 0.651795 | 2:-55912999 | MsG0280009662.01.T01:CDS |
| ATTGATAGTTGGCGAGACTG+GGG | 0.652868 | 2:-55913002 | MsG0280009662.01.T01:CDS |
| GCTCTAATAACGAAATGGAG+GGG | 0.658206 | 2:-55911952 | MsG0280009662.01.T01:three_prime_UTR |
| GGACAAAAGAATAATGGTGG+TGG | 0.664498 | 2:-55912232 | MsG0280009662.01.T01:CDS |
| GGTGACACAGAAGGTGGACA+AGG | 0.664733 | 2:-55912211 | MsG0280009662.01.T01:CDS |
| GACAACATAGATGGATACAG+TGG | 0.694460 | 2:-55912034 | MsG0280009662.01.T01:CDS |
| ACAGAAGGTTGGAGAGACTG+GGG | 0.696017 | 2:-55912148 | MsG0280009662.01.T01:CDS |
| GGTGGTGGTGACACAGAAGG+TGG | 0.703381 | 2:-55912217 | MsG0280009662.01.T01:CDS |
| GAAGGTTGGAGAGACTGGGG+AGG | 0.706547 | 2:-55912145 | MsG0280009662.01.T01:CDS |
| AATGGTGGTGGTGACACAGA+AGG | 0.731799 | 2:-55912220 | MsG0280009662.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGATAATATATATCATT+TGG | + | Chr2:55912161-55912180 | None:intergenic | 10.0% |
| !!! | ATTTTATTTTACATACTATA+TGG | + | Chr2:55913881-55913900 | None:intergenic | 10.0% |
| !!! | TTTTATTTTACATACTATAT+GGG | + | Chr2:55913880-55913899 | None:intergenic | 10.0% |
| !! | AAGAATAAAATTATCTTGAT+TGG | + | Chr2:55913171-55913190 | None:intergenic | 15.0% |
| !! | ATTTGACTACAATATAATAT+TGG | - | Chr2:55913244-55913263 | MsG0280009662.01.T01:CDS | 15.0% |
| !! | CTAAACCATTTAAAAATATT+AGG | + | Chr2:55911918-55911937 | None:intergenic | 15.0% |
| !!! | AATATAATATTGGTTAATCA+AGG | - | Chr2:55913254-55913273 | MsG0280009662.01.T01:CDS | 15.0% |
| !!! | ATGTTCCTAATATTTTTAAA+TGG | - | Chr2:55911910-55911929 | MsG0280009662.01.T01:three_prime_UTR | 15.0% |
| !! | AAAATACAACGTACAATAAT+AGG | + | Chr2:55913146-55913165 | None:intergenic | 20.0% |
| !! | AAAGAATCCAAAACAAAAAT+AGG | - | Chr2:55912733-55912752 | MsG0280009662.01.T01:intron | 20.0% |
| !! | AGAAATTGAAAGGTTATATT+GGG | + | Chr2:55912102-55912121 | None:intergenic | 20.0% |
| !! | AGAGAATTCAAAACAAAAAT+AGG | - | Chr2:55913461-55913480 | MsG0280009662.01.T01:intron | 20.0% |
| !! | ATGATTCCTAAAATATTTGA+TGG | - | Chr2:55911736-55911755 | MsG0280009662.01.T01:three_prime_UTR | 20.0% |
| !! | TAGAAAATACCAATATTCAA+TGG | - | Chr2:55911780-55911799 | MsG0280009662.01.T01:three_prime_UTR | 20.0% |
| !! | TATCAATAACCATTGAATAT+TGG | + | Chr2:55911792-55911811 | None:intergenic | 20.0% |
| !! | TTTCTTTATGATGACTATTA+CGG | - | Chr2:55911966-55911985 | MsG0280009662.01.T01:three_prime_UTR | 20.0% |
| !!! | ATCAATTCCTATTTTTGTTT+TGG | + | Chr2:55912743-55912762 | None:intergenic | 20.0% |
| !!! | ATTTCTTTTTAGATAAGTGA+TGG | - | Chr2:55911863-55911882 | MsG0280009662.01.T01:three_prime_UTR | 20.0% |
| !!! | GAAATACCATCAAATATTTT+AGG | + | Chr2:55911745-55911764 | None:intergenic | 20.0% |
| !!! | TAGAACTATGTTTAAGATTA+AGG | - | Chr2:55912002-55912021 | MsG0280009662.01.T01:exon | 20.0% |
| !!! | TTTCTTTTTGATGACTATTA+TGG | - | Chr2:55912972-55912991 | MsG0280009662.01.T01:CDS | 20.0% |
| ! | AAAACAAAAATAGGAACTGA+TGG | - | Chr2:55913470-55913489 | MsG0280009662.01.T01:intron | 25.0% |
| ! | AAAACAAAAGTAGGAATTGA+TGG | - | Chr2:55912511-55912530 | MsG0280009662.01.T01:intron | 25.0% |
| ! | AAAGAATCCAAAACAAAAGT+AGG | - | Chr2:55912502-55912521 | MsG0280009662.01.T01:intron | 25.0% |
| ! | ATTTGACTACAATATACTGT+TGG | - | Chr2:55912280-55912299 | MsG0280009662.01.T01:CDS | 25.0% |
| ! | GAGAAATTGAAAGGTTATAT+TGG | + | Chr2:55912103-55912122 | None:intergenic | 25.0% |
| ! | GATAATATATATCATTTGGC+TGG | + | Chr2:55912157-55912176 | None:intergenic | 25.0% |
| ! | GTAGTATAATCTAAAGATGT+CGG | + | Chr2:55913979-55913998 | None:intergenic | 25.0% |
| ! | TAAACAAAGAAAGAACATGA+AGG | + | Chr2:55912335-55912354 | None:intergenic | 25.0% |
| ! | TAACAGATACTGATATTCAA+TGG | - | Chr2:55912852-55912871 | MsG0280009662.01.T01:intron | 25.0% |
| ! | TAACCTTTCAATTTCTCAAT+AGG | - | Chr2:55912106-55912125 | MsG0280009662.01.T01:CDS | 25.0% |
| ! | TAGTCAAATATGAATACAAC+CGG | + | Chr2:55912269-55912288 | None:intergenic | 25.0% |
| ! | TTATCTCTATAAATAGCATC+CGG | - | Chr2:55912247-55912266 | MsG0280009662.01.T01:CDS | 25.0% |
| !! | AATCTTATGTCACATTTTCA+TGG | + | Chr2:55912642-55912661 | None:intergenic | 25.0% |
| !! | AATGTTGATGGAATAAACAA+AGG | - | Chr2:55913662-55913681 | MsG0280009662.01.T01:intron | 25.0% |
| !! | CAAAAATAGGAATTGATAGT+TGG | - | Chr2:55912746-55912765 | MsG0280009662.01.T01:intron | 25.0% |
| !! | TGGTATTTTCTTTAATATCG+TGG | + | Chr2:55913016-55913035 | None:intergenic | 25.0% |
| !!! | AATATACTGTTGGTTTATCA+AGG | - | Chr2:55912290-55912309 | MsG0280009662.01.T01:CDS | 25.0% |
| !!! | AGTGTTTTTTGATTTGTAGT+TGG | - | Chr2:55912472-55912491 | MsG0280009662.01.T01:intron | 25.0% |
| !!! | ATCAATTCCTACTTTTGTTT+TGG | + | Chr2:55912512-55912531 | None:intergenic | 25.0% |
| !!! | GGTTTTTGATAATAGTATGT+AGG | - | Chr2:55912873-55912892 | MsG0280009662.01.T01:intron | 25.0% |
| !!! | TATACATTGATTCTCATCAT+TGG | + | Chr2:55912392-55912411 | None:intergenic | 25.0% |
| ACACCTATTGAGAAATTGAA+AGG | + | Chr2:55912112-55912131 | None:intergenic | 30.0% | |
| ACTACTTCTTATCTCTACTA+GGG | - | Chr2:55913318-55913337 | MsG0280009662.01.T01:intron | 30.0% | |
| CTAGACATGAAGTAAGATTT+AGG | + | Chr2:55913908-55913927 | None:intergenic | 30.0% | |
| GAAGATGGACAAAAGAATAA+TGG | - | Chr2:55913521-55913540 | MsG0280009662.01.T01:intron | 30.0% | |
| TAACAAGTGATTAAGACGTT+TGG | + | Chr2:55913036-55913055 | None:intergenic | 30.0% | |
| TACTACTTCTTATCTCTACT+AGG | - | Chr2:55913317-55913336 | MsG0280009662.01.T01:intron | 30.0% | |
| TTGAATTAGAAAGGTTTGAG+AGG | - | Chr2:55913755-55913774 | MsG0280009662.01.T01:intron | 30.0% | |
| ! | GGTTATTGATAATAGTCTGT+AGG | - | Chr2:55911801-55911820 | MsG0280009662.01.T01:three_prime_UTR | 30.0% |
| !! | ATGTAGGAGTCTTATTTCTA+TGG | + | Chr2:55913844-55913863 | None:intergenic | 30.0% |
| !!! | AGTGTTTTTTGATTTGCAGT+TGG | - | Chr2:55912703-55912722 | MsG0280009662.01.T01:intron | 30.0% |
| AAAGAAGGTGGAGAAAGTAA+AGG | - | Chr2:55912595-55912614 | MsG0280009662.01.T01:intron | 35.0% | |
| AACCTTCTGTTACACTTTCA+TGG | + | Chr2:55913601-55913620 | None:intergenic | 35.0% | |
| AATGGTGAAAGTGACAAAGA+AGG | - | Chr2:55912580-55912599 | MsG0280009662.01.T01:intron | 35.0% | |
| ACTACTTCTTATCTCTACCA+GGG | - | Chr2:55912354-55912373 | MsG0280009662.01.T01:intron | 35.0% | |
| AGGAAAAAGAGAGGTTAGAA+AGG | - | Chr2:55913782-55913801 | MsG0280009662.01.T01:intron | 35.0% | |
| AGGTTGCTCTAATAACGAAA+TGG | - | Chr2:55913802-55913821 | MsG0280009662.01.T01:intron | 35.0% | |
| CAAAAATAGGAACTGATGGT+TGG | - | Chr2:55913474-55913493 | MsG0280009662.01.T01:intron | 35.0% | |
| CACACAATGACTTTGATCTT+TGG | + | Chr2:55913356-55913375 | None:intergenic | 35.0% | |
| GAAGATGGACAAGAGAATAA+TGG | - | Chr2:55912562-55912581 | MsG0280009662.01.T01:intron | 35.0% | |
| GATGAGAAAGAGAATGTTGA+TGG | - | Chr2:55913650-55913669 | MsG0280009662.01.T01:intron | 35.0% | |
| GATGGACAAAAGAATAATGG+TGG | - | Chr2:55913524-55913543 | MsG0280009662.01.T01:intron | 35.0% | |
| GGTGGAGATTTGAATTAGAA+AGG | - | Chr2:55913746-55913765 | MsG0280009662.01.T01:intron | 35.0% | |
| TACTACTTCTTATCTCTACC+AGG | - | Chr2:55912353-55912372 | MsG0280009662.01.T01:intron | 35.0% | |
| TGCTCTAATAACGAAATGGA+GGG | - | Chr2:55913806-55913825 | MsG0280009662.01.T01:intron | 35.0% | |
| TGGAACATGTTTATCAAACG+AGG | + | Chr2:55912083-55912102 | None:intergenic | 35.0% | |
| TTGCTCTAATAACGAAATGG+AGG | - | Chr2:55913805-55913824 | MsG0280009662.01.T01:intron | 35.0% | |
| ! | ATAAACAAAGGAAGTGCACA+TGG | - | Chr2:55913674-55913693 | MsG0280009662.01.T01:intron | 35.0% |
| ! | ATGAAAGTGTAACAGAAGGT+TGG | - | Chr2:55913600-55913619 | MsG0280009662.01.T01:intron | 35.0% |
| ! | CAAAAGTAGGAATTGATGGT+TGG | - | Chr2:55912515-55912534 | MsG0280009662.01.T01:intron | 35.0% |
| ! | GGTAAAGGTGCAAAAGAAAA+AGG | - | Chr2:55913569-55913588 | MsG0280009662.01.T01:intron | 35.0% |
| !!! | GTACTTTTTTGATTCGCAGT+TGG | - | Chr2:55913431-55913450 | MsG0280009662.01.T01:intron | 35.0% |
| AACATAGATGGATACAGTGG+TGG | - | Chr2:55913728-55913747 | MsG0280009662.01.T01:intron | 40.0% | |
| AGAAAGGTTTGAGAGGTTTG+AGG | - | Chr2:55913762-55913781 | MsG0280009662.01.T01:intron | 40.0% | |
| AGAGGTTTGAGGAAAAAGAG+AGG | - | Chr2:55913773-55913792 | MsG0280009662.01.T01:intron | 40.0% | |
| AGTGGAAGAGACAACATAGA+TGG | - | Chr2:55913716-55913735 | MsG0280009662.01.T01:intron | 40.0% | |
| ATTGGATGTTTGAATTGCCC+TGG | + | Chr2:55912374-55912393 | None:intergenic | 40.0% | |
| CTTACCTTGTTCGATGAACA+TGG | - | Chr2:55913079-55913098 | MsG0280009662.01.T01:intron | 40.0% | |
| GACAACATAGATGGATACAG+TGG | - | Chr2:55913725-55913744 | MsG0280009662.01.T01:intron | 40.0% | |
| GCTCTAATAACGAAATGGAG+GGG | - | Chr2:55913807-55913826 | MsG0280009662.01.T01:intron | 40.0% | |
| GGACAAAAGAATAATGGTGG+TGG | - | Chr2:55913527-55913546 | MsG0280009662.01.T01:intron | 40.0% | |
| GGATCTGGAGAAGAGAATAA+TGG | - | Chr2:55912793-55912812 | MsG0280009662.01.T01:intron | 40.0% | |
| GGGATACAATACACACATGT+AGG | + | Chr2:55913860-55913879 | None:intergenic | 40.0% | |
| TCTGGAGAAGAGAATAATGG+TGG | - | Chr2:55912796-55912815 | MsG0280009662.01.T01:intron | 40.0% | |
| ! | AAAGGAAGTGCACATGGAAA+AGG | - | Chr2:55913680-55913699 | MsG0280009662.01.T01:intron | 40.0% |
| ! | AATTGATAGTTGGCGAGACT+GGG | - | Chr2:55912756-55912775 | MsG0280009662.01.T01:intron | 40.0% |
| ! | AATTGATGGTTGGCGAGATT+GGG | - | Chr2:55912525-55912544 | MsG0280009662.01.T01:intron | 40.0% |
| ! | GAAAGCACACGAAGAAAAAC+TGG | + | Chr2:55913291-55913310 | None:intergenic | 40.0% |
| ! | GTCCATGAAAGTGTAACAGA+AGG | - | Chr2:55913596-55913615 | MsG0280009662.01.T01:intron | 40.0% |
| AAAGGTGAAGACAGCGAAAG+TGG | - | Chr2:55913698-55913717 | MsG0280009662.01.T01:intron | 45.0% | |
| AACAGAAGGTTGGAGAGACT+GGG | - | Chr2:55913610-55913629 | MsG0280009662.01.T01:intron | 45.0% | |
| AACTGATGGTTGGCGTGATT+GGG | - | Chr2:55913484-55913503 | MsG0280009662.01.T01:intron | 45.0% | |
| ACAGAAGGTGGACAAGGTAA+AGG | - | Chr2:55913554-55913573 | MsG0280009662.01.T01:intron | 45.0% | |
| GGAGAAGAGAATAATGGTGG+AGG | - | Chr2:55912799-55912818 | MsG0280009662.01.T01:intron | 45.0% | |
| GGTGAAAGTGACAAAGAAGG+TGG | - | Chr2:55912583-55912602 | MsG0280009662.01.T01:intron | 45.0% | |
| TAACAGAAGGTTGGAGAGAC+TGG | - | Chr2:55913609-55913628 | MsG0280009662.01.T01:intron | 45.0% | |
| ! | AGACTGGGGAGGATCATTTT+GGG | - | Chr2:55912771-55912790 | MsG0280009662.01.T01:intron | 45.0% |
| ! | AGAGAATAATGGTGGAGGTG+AGG | - | Chr2:55912804-55912823 | MsG0280009662.01.T01:intron | 45.0% |
| ! | ATTGATAGTTGGCGAGACTG+GGG | - | Chr2:55912757-55912776 | MsG0280009662.01.T01:intron | 45.0% |
| ! | ATTGATGGTTGGCGAGATTG+GGG | - | Chr2:55912526-55912545 | MsG0280009662.01.T01:intron | 45.0% |
| ! | GAATTGATAGTTGGCGAGAC+TGG | - | Chr2:55912755-55912774 | MsG0280009662.01.T01:intron | 45.0% |
| ! | GAATTGATGGTTGGCGAGAT+TGG | - | Chr2:55912524-55912543 | MsG0280009662.01.T01:intron | 45.0% |
| ! | TGGCTGGTTGTGAGAACAAT+AGG | + | Chr2:55912141-55912160 | None:intergenic | 45.0% |
| !!! | CTTTTAATTAAATATAATAA+AGG | + | Chr2:55912685-55912704 | None:intergenic | 5.0% |
| ACAGAAGGTTGGAGAGACTG+GGG | - | Chr2:55913611-55913630 | MsG0280009662.01.T01:intron | 50.0% | |
| ACTGATGGTTGGCGTGATTG+GGG | - | Chr2:55913485-55913504 | MsG0280009662.01.T01:intron | 50.0% | |
| AGATTGGGGAGGCTCATTCT+GGG | - | Chr2:55912540-55912559 | MsG0280009662.01.T01:intron | 50.0% | |
| GAACTGATGGTTGGCGTGAT+TGG | - | Chr2:55913483-55913502 | MsG0280009662.01.T01:intron | 50.0% | |
| TGATTGGGGAGGCTCATTCT+GGG | - | Chr2:55913499-55913518 | MsG0280009662.01.T01:intron | 50.0% | |
| TGGGCCATGTTCATCGAACA+AGG | + | Chr2:55913086-55913105 | None:intergenic | 50.0% | |
| ! | AATGGTGGAGGTGAGGAAGA+AGG | - | Chr2:55912811-55912830 | MsG0280009662.01.T01:intron | 50.0% |
| ! | AGACTGGGGAGGCTCATTTT+GGG | - | Chr2:55913625-55913644 | MsG0280009662.01.T01:intron | 50.0% |
| ! | GACTGGGGAGGATCATTTTG+GGG | - | Chr2:55912772-55912791 | MsG0280009662.01.T01:intron | 50.0% |
| ! | GAGACTGGGGAGGATCATTT+TGG | - | Chr2:55912770-55912789 | MsG0280009662.01.T01:intron | 50.0% |
| !! | AATGGTGGTGGTGACACAGA+AGG | - | Chr2:55913539-55913558 | MsG0280009662.01.T01:intron | 50.0% |
| !! | GGAGGATCATTTTGGGGATC+TGG | - | Chr2:55912778-55912797 | MsG0280009662.01.T01:intron | 50.0% |
| GAGATTGGGGAGGCTCATTC+TGG | - | Chr2:55912539-55912558 | MsG0280009662.01.T01:intron | 55.0% | |
| GGTGACACAGAAGGTGGACA+AGG | - | Chr2:55913548-55913567 | MsG0280009662.01.T01:intron | 55.0% | |
| GGTGAGGAAGAAGGCAGACA+AGG | - | Chr2:55912820-55912839 | MsG0280009662.01.T01:intron | 55.0% | |
| GTGATTGGGGAGGCTCATTC+TGG | - | Chr2:55913498-55913517 | MsG0280009662.01.T01:intron | 55.0% | |
| ! | GAGACTGGGGAGGCTCATTT+TGG | - | Chr2:55913624-55913643 | MsG0280009662.01.T01:intron | 55.0% |
| ! | GGAGGCTCATTCTGGGAAGA+TGG | - | Chr2:55912547-55912566 | MsG0280009662.01.T01:intron | 55.0% |
| GAAGGTTGGAGAGACTGGGG+AGG | - | Chr2:55913614-55913633 | MsG0280009662.01.T01:intron | 60.0% | |
| GATAGTTGGCGAGACTGGGG+AGG | - | Chr2:55912760-55912779 | MsG0280009662.01.T01:intron | 60.0% | |
| GATGGTTGGCGAGATTGGGG+AGG | - | Chr2:55912529-55912548 | MsG0280009662.01.T01:intron | 60.0% | |
| GATGGTTGGCGTGATTGGGG+AGG | - | Chr2:55913488-55913507 | MsG0280009662.01.T01:intron | 60.0% | |
| ! | GGTGGTGGTGACACAGAAGG+TGG | - | Chr2:55913542-55913561 | MsG0280009662.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 55911736 | 55914045 | 55911736 | ID=MsG0280009662.01;Name=MsG0280009662.01 |
| Chr2 | mRNA | 55911736 | 55914045 | 55911736 | ID=MsG0280009662.01.T01;Parent=MsG0280009662.01;Name=MsG0280009662.01.T01;_AED=0.50;_eAED=0.51;_QI=0|0.66|0.75|1|0.66|0.75|4|282|193 |
| Chr2 | exon | 55914024 | 55914045 | 55914024 | ID=MsG0280009662.01.T01:exon:5851;Parent=MsG0280009662.01.T01 |
| Chr2 | exon | 55913165 | 55913290 | 55913165 | ID=MsG0280009662.01.T01:exon:5852;Parent=MsG0280009662.01.T01 |
| Chr2 | exon | 55912940 | 55913059 | 55912940 | ID=MsG0280009662.01.T01:exon:5853;Parent=MsG0280009662.01.T01 |
| Chr2 | exon | 55911736 | 55912331 | 55911736 | ID=MsG0280009662.01.T01:exon:5854;Parent=MsG0280009662.01.T01 |
| Chr2 | CDS | 55914024 | 55914045 | 55914024 | ID=MsG0280009662.01.T01:cds;Parent=MsG0280009662.01.T01 |
| Chr2 | CDS | 55913165 | 55913290 | 55913165 | ID=MsG0280009662.01.T01:cds;Parent=MsG0280009662.01.T01 |
| Chr2 | CDS | 55912940 | 55913059 | 55912940 | ID=MsG0280009662.01.T01:cds;Parent=MsG0280009662.01.T01 |
| Chr2 | CDS | 55912018 | 55912331 | 55912018 | ID=MsG0280009662.01.T01:cds;Parent=MsG0280009662.01.T01 |
| Chr2 | three_prime_UTR | 55911736 | 55912017 | 55911736 | ID=MsG0280009662.01.T01:three_prime_utr;Parent=MsG0280009662.01.T01 |
| Gene Sequence |
| Protein sequence |
