AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002425.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002425.01.T01 MTR_1g050462 79.478 268 11 3 43 299 180 414 3.47e-123 358
MsG0180002425.01.T01 MTR_1g050462 80.508 236 13 2 43 278 180 382 2.77e-108 320
MsG0180002425.01.T01 MTR_1g050462 74.405 168 10 2 43 210 180 314 6.82e-69 217
MsG0180002425.01.T01 MTR_1g050462 82.500 80 12 1 43 122 180 257 2.48e-31 118
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002425.01.T01 AT3G56160 53.782 238 63 5 75 299 206 409 7.96e-70 222
MsG0180002425.01.T01 AT3G56160 53.782 238 63 5 75 299 233 436 1.77e-69 222
MsG0180002425.01.T01 AT3G56160 53.631 179 49 2 75 253 206 350 1.41e-52 176
MsG0180002425.01.T01 AT3G56160 54.815 135 30 1 75 209 233 336 1.35e-37 136
MsG0180002425.01.T01 AT3G56160 52.703 74 30 2 75 145 206 277 4.70e-13 68.9

Find 71 sgRNAs with CRISPR-Local

Find 430 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTACCTTTCCCAAAATA+AGG 0.180711 1:+38285558 None:intergenic
ACTTCTTCATCTGACCTTAT+TGG 0.189310 1:-38281415 MsG0180002425.01.T01:CDS
CTCTGATTTCTATTCACTTA+TGG 0.205037 1:-38280623 MsG0180002425.01.T01:three_prime_UTR
GTACAAGAGCATACTAATTT+TGG 0.220761 1:+38280746 None:intergenic
AGACATCCACCACTCATTAT+TGG 0.227880 1:-38280525 MsG0180002425.01.T01:three_prime_UTR
CTCTTGTACATTGTTCATTC+TGG 0.239014 1:-38280732 MsG0180002425.01.T01:three_prime_UTR
TGTGGTGCATTTGGAGAATC+TGG 0.261628 1:-38281087 MsG0180002425.01.T01:CDS
ATTTGGAGAATCTGGGTTAC+TGG 0.268679 1:-38281079 MsG0180002425.01.T01:intron
ACTTTGATTCTGCAGCTTGC+TGG 0.286403 1:-38287381 MsG0180002425.01.T01:CDS
TTACATGATTACTTGGTATA+AGG 0.296905 1:+38280577 None:intergenic
AATTACCTTTCCCAAAATAA+GGG 0.315621 1:+38285559 None:intergenic
ATCTTGAATTGCATGAAAAT+TGG 0.318829 1:+38287614 None:intergenic
TCTATAACCGCTACCATTAC+TGG 0.327775 1:+38281117 None:intergenic
GAGCCACTTTGTGGTGCATT+TGG 0.332991 1:-38281096 MsG0180002425.01.T01:CDS
TTAAGCCACCTTGACATTGC+CGG 0.369195 1:+38280908 None:intergenic
CAGCATATAGTTCAATATAA+TGG 0.387674 1:-38280662 MsG0180002425.01.T01:three_prime_UTR
ATAGTTCAATATAATGGATA+TGG 0.393051 1:-38280656 MsG0180002425.01.T01:three_prime_UTR
AGTTGGCATACAGCAAAATA+TGG 0.395674 1:+38287562 None:intergenic
ACAGTAATATCTAACTTGTT+AGG 0.396771 1:-38287330 MsG0180002425.01.T01:CDS
GGACTGCTTACATGATTACT+TGG 0.421776 1:+38280570 None:intergenic
CGGAGTCTTTCAATTATCTC+TGG 0.427541 1:-38281372 MsG0180002425.01.T01:CDS
AATGCTATTGAATACCAATA+AGG 0.454180 1:+38281401 None:intergenic
AAGAGTGTTAACAATTTGCT+TGG 0.457278 1:-38280793 MsG0180002425.01.T01:three_prime_UTR
TCAGAAAACATTACCAGTAA+TGG 0.457392 1:-38281130 MsG0180002425.01.T01:intron
ATCACAAAATTTGTAGCTAG+TGG 0.459990 1:-38285644 MsG0180002425.01.T01:CDS
TTTCATTGCTTTGAATGGGC+AGG 0.464504 1:-38284590 MsG0180002425.01.T01:CDS
CATTATATTGAACTATATGC+TGG 0.465582 1:+38280663 None:intergenic
TGATTTCTATTCACTTATGG+TGG 0.468754 1:-38280620 MsG0180002425.01.T01:three_prime_UTR
TAAGCCACCTTGACATTGCC+GGG 0.474863 1:+38280909 None:intergenic
AAATTTGTAGCTAGTGGAGT+TGG 0.486943 1:-38285638 MsG0180002425.01.T01:CDS
AGCAAATTCCTACCAGGCTA+AGG 0.489921 1:+38282668 None:intergenic
TCGTCTGTGGATTGATATGC+TGG 0.491910 1:-38280851 MsG0180002425.01.T01:three_prime_UTR
TTTCTTGTAGCTATTGGACT+GGG 0.493824 1:-38282352 MsG0180002425.01.T01:CDS
ATATCATCCTGCAGGTACCT+TGG 0.501746 1:-38282426 MsG0180002425.01.T01:intron
ACACCACTTGATAATGTAGT+TGG 0.522256 1:+38287545 None:intergenic
TGCTGGAGCAAATACTGCAC+TGG 0.529303 1:-38287364 MsG0180002425.01.T01:CDS
GACTTGCTCACTTGTATCCA+AGG 0.541072 1:+38282409 None:intergenic
GTGGTGCATTTGGAGAATCT+GGG 0.542143 1:-38281086 MsG0180002425.01.T01:CDS
ACTCATACTAGTTGCAAGCC+AGG 0.542506 1:-38281307 MsG0180002425.01.T01:intron
AAAGATCGGAAACAATATGC+TGG 0.543161 1:+38280700 None:intergenic
TATTCAATAGCATTGCTGTC+CGG 0.543451 1:-38281392 MsG0180002425.01.T01:CDS
ATAATGAGTGGTGGATGTCT+TGG 0.544173 1:+38280528 None:intergenic
TCATCATTGATTGTCGTCTG+TGG 0.547197 1:-38280864 MsG0180002425.01.T01:three_prime_UTR
GAACACCTTGTAGATTATTG+TGG 0.563250 1:-38280970 MsG0180002425.01.T01:intron
ATTACCTTTCCCAAAATAAG+GGG 0.563723 1:+38285560 None:intergenic
GCGGTTATAGAGCCACTTTG+TGG 0.565801 1:-38281105 MsG0180002425.01.T01:CDS
ATTATATTGAACTATATGCT+GGG 0.566919 1:+38280664 None:intergenic
AGACAATCCCGGCAATGTCA+AGG 0.577252 1:-38280916 MsG0180002425.01.T01:CDS
AGTCTTTCAATTATCTCTGG+TGG 0.578014 1:-38281369 MsG0180002425.01.T01:CDS
TGATCCCTGAGAAAAGCTTA+CGG 0.582266 1:+38282701 None:intergenic
TATTGAACTATATGCTGGGA+CGG 0.589004 1:+38280668 None:intergenic
ATGCGTCGCAAAGACAATCC+CGG 0.590549 1:-38280927 MsG0180002425.01.T01:CDS
GAAACACATCATGCTGCACA+TGG 0.591773 1:-38280820 MsG0180002425.01.T01:three_prime_UTR
AACATTACCAGTAATGGTAG+CGG 0.596517 1:-38281124 MsG0180002425.01.T01:CDS
CAGAGATAATTGAAAGACTC+CGG 0.603417 1:+38281373 None:intergenic
AAGTGGTGTTGCACTTACCC+AGG 0.603604 1:-38287531 MsG0180002425.01.T01:intron
TGCAACTAGTATGAGTGCGT+TGG 0.605826 1:+38281314 None:intergenic
TCGGAAACAATATGCTGGAA+CGG 0.611045 1:+38280705 None:intergenic
ATGATTACTTGGTATAAGGA+CGG 0.613622 1:+38280581 None:intergenic
AGCAAGCTGCAGAATCAAAG+TGG 0.615487 1:+38287383 None:intergenic
TGAGAAAAGCCAATAATGAG+TGG 0.618598 1:+38280516 None:intergenic
GACGGACTGAAAATAAAGAT+CGG 0.620683 1:+38280686 None:intergenic
TCTCCAAATGCACCACAAAG+TGG 0.621477 1:+38281093 None:intergenic
TTACCTTTCCCAAAATAAGG+GGG 0.625879 1:+38285561 None:intergenic
GGATACAAGTGAGCAAGTCA+AGG 0.631449 1:-38282405 MsG0180002425.01.T01:CDS
GACTATGAGAGCAATTGTGA+TGG 0.637145 1:+38287638 None:intergenic
ATGCCAACTACATTATCAAG+TGG 0.643732 1:-38287548 MsG0180002425.01.T01:CDS
AATTAAACAGAAACAATGAA+AGG 0.646372 1:+38280474 None:intergenic
ATGTCAAGGTGGCTTAAGAG+AGG 0.650713 1:-38280902 MsG0180002425.01.T01:exon
GAAAAGCCAATAATGAGTGG+TGG 0.657470 1:+38280519 None:intergenic
CAATCCCGGCAATGTCAAGG+TGG 0.687891 1:-38280913 MsG0180002425.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAGATTTGATTAAATA+GGG - Chr1:38284958-38284977 MsG0180002425.01.T01:intron 10.0%
!!! TATTTTAGATTTGATTAAAT+AGG - Chr1:38284957-38284976 MsG0180002425.01.T01:intron 10.0%
!!! TTGTTAATTAATTTGTTAAT+GGG - Chr1:38283996-38284015 MsG0180002425.01.T01:intron 10.0%
!!! TTTGTTAATTAATTTGTTAA+TGG - Chr1:38283995-38284014 MsG0180002425.01.T01:intron 10.0%
!! AAAAAAACAAGAGATTTAAA+TGG - Chr1:38285456-38285475 MsG0180002425.01.T01:intron 15.0%
!! AAAAAATCGGTTAAATATTA+TGG + Chr1:38284236-38284255 None:intergenic 15.0%
!! AAAAATCGGTTAAATATTAT+GGG + Chr1:38284235-38284254 None:intergenic 15.0%
!! AAAACAATAATAAGATTAGA+TGG + Chr1:38282351-38282370 None:intergenic 15.0%
!! AAATATAATAATTCAAGAGA+AGG + Chr1:38285425-38285444 None:intergenic 15.0%
!! AACATAATATGTAATTGAAA+AGG + Chr1:38286140-38286159 None:intergenic 15.0%
!! AATAGAAATAAAAACAGAAA+AGG + Chr1:38280599-38280618 None:intergenic 15.0%
!! AGTTAGTAATAGAAATAATA+AGG - Chr1:38284311-38284330 MsG0180002425.01.T01:intron 15.0%
!! ATAAGCTATATAAAACTTAT+AGG + Chr1:38280622-38280641 None:intergenic 15.0%
!! ATAATCCATAAAAATAGTAA+TGG + Chr1:38283104-38283123 None:intergenic 15.0%
!! ATAATCCATAAAAATTGTAA+AGG + Chr1:38283023-38283042 None:intergenic 15.0%
!! ATTGTTTAAAAAGATAGAAA+AGG + Chr1:38282298-38282317 None:intergenic 15.0%
!! TAACTGTATATATATGAATA+AGG + Chr1:38284711-38284730 None:intergenic 15.0%
!! TAATTAATGATTGATATTAG+AGG - Chr1:38286029-38286048 MsG0180002425.01.T01:intron 15.0%
!! TATTTATATATGTGCTTATT+AGG - Chr1:38282002-38282021 MsG0180002425.01.T01:intron 15.0%
!! TCTATATTGATAGAAAATAT+TGG - Chr1:38280908-38280927 MsG0180002425.01.T01:CDS 15.0%
!! TTTCATATATGCATATAATT+TGG - Chr1:38286462-38286481 MsG0180002425.01.T01:intron 15.0%
!!! AATTTTTTGCTCTTTATTTA+AGG - Chr1:38285190-38285209 MsG0180002425.01.T01:intron 15.0%
!!! ATATTTAACCGATTTTTTTA+AGG - Chr1:38284238-38284257 MsG0180002425.01.T01:intron 15.0%
!!! ATTAAATTTTAGGAATTGAA+CGG - Chr1:38280868-38280887 MsG0180002425.01.T01:three_prime_UTR 15.0%
!!! ATTAGGTTATTTTATACTAT+TGG - Chr1:38282019-38282038 MsG0180002425.01.T01:intron 15.0%
!!! CAATTTATTAATTGTTGTTT+TGG - Chr1:38285818-38285837 MsG0180002425.01.T01:intron 15.0%
!!! TATTTAACCGATTTTTTTAA+GGG - Chr1:38284239-38284258 MsG0180002425.01.T01:intron 15.0%
!!! TGATTAATTTTCTTTTTATG+TGG - Chr1:38284907-38284926 MsG0180002425.01.T01:intron 15.0%
!!! TTAGGTTATTTTATACTATT+GGG - Chr1:38282020-38282039 MsG0180002425.01.T01:intron 15.0%
!! AAAAATTTAGACTACAATCA+CGG + Chr1:38285177-38285196 None:intergenic 20.0%
!! AAATAGAGTTAAACATTTAC+AGG + Chr1:38286170-38286189 None:intergenic 20.0%
!! AATGATAAGTATATGCATAA+AGG - Chr1:38284834-38284853 MsG0180002425.01.T01:intron 20.0%
!! AATTAAACAGAAACAATGAA+AGG + Chr1:38287595-38287614 None:intergenic 20.0%
!! ATTATATTGAACTATATGCT+GGG + Chr1:38287405-38287424 None:intergenic 20.0%
!! CAATATACCCTTAAAAAAAT+CGG + Chr1:38284249-38284268 None:intergenic 20.0%
!! CTGTAATTTATAATCATTCA+AGG + Chr1:38281363-38281382 None:intergenic 20.0%
!! CTTGAATGATTATAAATTAC+AGG - Chr1:38281361-38281380 MsG0180002425.01.T01:CDS 20.0%
!! TCACTTATTGAACTTTAATT+TGG + Chr1:38283178-38283197 None:intergenic 20.0%
!! TCTAAGTTTATAATAGAAGA+GGG - Chr1:38281691-38281710 MsG0180002425.01.T01:intron 20.0%
!! TTAAAAATAAATCAATCACC+TGG + Chr1:38287041-38287060 None:intergenic 20.0%
!!! AACAGTTTAAATTTTGTTTG+AGG - Chr1:38283400-38283419 MsG0180002425.01.T01:intron 20.0%
!!! AATGTTTAACTCTATTTTCA+TGG - Chr1:38286173-38286192 MsG0180002425.01.T01:intron 20.0%
!!! AGTTTTGTTTAATAATACTC+CGG - Chr1:38286257-38286276 MsG0180002425.01.T01:intron 20.0%
!!! ATAGTTCAATATAATGGATA+TGG - Chr1:38287410-38287429 MsG0180002425.01.T01:intron 20.0%
!!! ATATTTTTCATTGCTTTGAA+TGG - Chr1:38283471-38283490 MsG0180002425.01.T01:intron 20.0%
!!! ATGGTCATAATTTTAAGATT+AGG + Chr1:38283894-38283913 None:intergenic 20.0%
!!! ATGTTTAACTCTATTTTCAT+GGG - Chr1:38286174-38286193 MsG0180002425.01.T01:intron 20.0%
!!! ATTGCTTTTTATTTATAGAC+AGG - Chr1:38282062-38282081 MsG0180002425.01.T01:intron 20.0%
!!! TAATGTTTGATTTTATCGAT+CGG + Chr1:38281824-38281843 None:intergenic 20.0%
!!! TATACTTCTTTATCTTTTTC+AGG - Chr1:38281533-38281552 MsG0180002425.01.T01:intron 20.0%
!!! TATTTTTCATTGCTTTGAAT+GGG - Chr1:38283472-38283491 MsG0180002425.01.T01:intron 20.0%
!!! TTCGTTTTATCAGAAATATA+TGG - Chr1:38283333-38283352 MsG0180002425.01.T01:intron 20.0%
!!! TTGATTGCATATATAGTTTT+TGG - Chr1:38283265-38283284 MsG0180002425.01.T01:intron 20.0%
!!! TTGCTTTTTATTTATAGACA+GGG - Chr1:38282063-38282082 MsG0180002425.01.T01:intron 20.0%
! AAAAGATAGAAAAGGAAAGA+AGG + Chr1:38282290-38282309 None:intergenic 25.0%
! AAACACAATTCTTAGCAATT+AGG - Chr1:38281232-38281251 MsG0180002425.01.T01:intron 25.0%
! AAAGAAAATTAATCAGCTCA+AGG + Chr1:38284902-38284921 None:intergenic 25.0%
! AAAGCAGTATACAATAGTTA+TGG - Chr1:38283662-38283681 MsG0180002425.01.T01:intron 25.0%
! AAATAATATGGCCAGTAAAT+TGG + Chr1:38283202-38283221 None:intergenic 25.0%
! AAATCAGTTAGAAAGTTAAG+AGG - Chr1:38286345-38286364 MsG0180002425.01.T01:intron 25.0%
! AAATTCACACTTAGAAGAAT+GGG - Chr1:38282869-38282888 MsG0180002425.01.T01:intron 25.0%
! AACAAGAGATTTAAATGGTT+TGG - Chr1:38285461-38285480 MsG0180002425.01.T01:intron 25.0%
! AAGAAAACATAATGATTACC+TGG + Chr1:38280556-38280575 None:intergenic 25.0%
! AAGAGTCACTTCAAATAATA+TGG + Chr1:38283214-38283233 None:intergenic 25.0%
! AAGCAGTATACAATAGTTAT+GGG - Chr1:38283663-38283682 MsG0180002425.01.T01:intron 25.0%
! AAGTAATAGGCAATATGATT+GGG - Chr1:38283127-38283146 MsG0180002425.01.T01:intron 25.0%
! AATAGAAATAATAAGGCACA+TGG - Chr1:38284318-38284337 MsG0180002425.01.T01:intron 25.0%
! AATAGCTACAAGAAAAACTT+TGG + Chr1:38285709-38285728 None:intergenic 25.0%
! AATGCTATTGAATACCAATA+AGG + Chr1:38286668-38286687 None:intergenic 25.0%
! AATTACCTTTCCCAAAATAA+GGG + Chr1:38282510-38282529 None:intergenic 25.0%
! AGAAAACATAATGATTACCT+GGG + Chr1:38280555-38280574 None:intergenic 25.0%
! AGTAAGACACTAATCTAATT+AGG + Chr1:38281092-38281111 None:intergenic 25.0%
! ATAAATAAGGAAGAGAGATT+AGG - Chr1:38284344-38284363 MsG0180002425.01.T01:intron 25.0%
! ATAATTATACTCTAACGCAA+AGG + Chr1:38281985-38282004 None:intergenic 25.0%
! ATAGAATGAAATGCAAAGTA+TGG + Chr1:38285878-38285897 None:intergenic 25.0%
! ATAGCTACAAGAAAAACTTT+GGG + Chr1:38285708-38285727 None:intergenic 25.0%
! ATCCATAAAAATAGTAATGG+TGG + Chr1:38283101-38283120 None:intergenic 25.0%
! ATCCATAAAAATTGTAAAGG+AGG + Chr1:38283020-38283039 None:intergenic 25.0%
! ATCTTGAATTGCATGAAAAT+TGG + Chr1:38280455-38280474 None:intergenic 25.0%
! ATTTACATATACATGCAGTA+GGG + Chr1:38285034-38285053 None:intergenic 25.0%
! CAAACTGAAACTAATTTCAT+AGG + Chr1:38286828-38286847 None:intergenic 25.0%
! CAGCATATAGTTCAATATAA+TGG - Chr1:38287404-38287423 MsG0180002425.01.T01:CDS 25.0%
! CATTATATTGAACTATATGC+TGG + Chr1:38287406-38287425 None:intergenic 25.0%
! CTAAAATTTAATCAGAGCAT+AGG + Chr1:38280860-38280879 None:intergenic 25.0%
! CTCTAAGTTTATAATAGAAG+AGG - Chr1:38281690-38281709 MsG0180002425.01.T01:intron 25.0%
! CTTTCTTTAACGAATTATGT+TGG + Chr1:38286509-38286528 None:intergenic 25.0%
! GATCAACTAGTGTTTATTTA+TGG - Chr1:38281113-38281132 MsG0180002425.01.T01:CDS 25.0%
! GGAAATAATTACAAGTGAAA+TGG + Chr1:38283713-38283732 None:intergenic 25.0%
! GGTTAAACATGAGTTATAAT+AGG - Chr1:38285482-38285501 MsG0180002425.01.T01:intron 25.0%
! GTTGACTGTATATCTATATA+CGG + Chr1:38284775-38284794 None:intergenic 25.0%
! TAAATAAGGAAGAGAGATTA+GGG - Chr1:38284345-38284364 MsG0180002425.01.T01:intron 25.0%
! TAAGTGTGAATTTCATCAAA+AGG + Chr1:38282862-38282881 None:intergenic 25.0%
! TAATATAGATGTCAAGTGAA+AGG - Chr1:38283831-38283850 MsG0180002425.01.T01:intron 25.0%
! TAGGTTTCATTATGTTTATG+AGG - Chr1:38282616-38282635 MsG0180002425.01.T01:intron 25.0%
! TAGTCTAGAAGAAGAATTAA+GGG + Chr1:38284612-38284631 None:intergenic 25.0%
! TAGTTTATCAAAATGTGTGA+TGG - Chr1:38285904-38285923 MsG0180002425.01.T01:intron 25.0%
! TATACTAGTAAAATGAGCTA+AGG - Chr1:38281757-38281776 MsG0180002425.01.T01:intron 25.0%
! TATATGCATAAAGGAATGTT+GGG - Chr1:38284843-38284862 MsG0180002425.01.T01:intron 25.0%
! TATTTACATATACATGCAGT+AGG + Chr1:38285035-38285054 None:intergenic 25.0%
! TGAATTTCATCAAAAGGTTT+GGG + Chr1:38282856-38282875 None:intergenic 25.0%
! TGATTCAAACTTTGATATCA+TGG - Chr1:38282928-38282947 MsG0180002425.01.T01:intron 25.0%
! TTACATAATACTCGATAGTA+AGG + Chr1:38281559-38281578 None:intergenic 25.0%
! TTACATGATTACTTGGTATA+AGG + Chr1:38287492-38287511 None:intergenic 25.0%
! TTGACTGTATATCTATATAC+GGG + Chr1:38284774-38284793 None:intergenic 25.0%
! TTGTATTATCACATTCACAA+TGG + Chr1:38285003-38285022 None:intergenic 25.0%
! TTTGAATCAAAAACATTCCA+GGG + Chr1:38282917-38282936 None:intergenic 25.0%
!! AAAGTTTTTCTTGTAGCTAT+TGG - Chr1:38285708-38285727 MsG0180002425.01.T01:intron 25.0%
!! AAGACTTTTAAATAACTGCT+TGG + Chr1:38282468-38282487 None:intergenic 25.0%
!! AATCTCTCTTCCTTATTTAT+AGG + Chr1:38284344-38284363 None:intergenic 25.0%
!! ACCTGTTTTATGTCTTTTTT+TGG - Chr1:38285129-38285148 MsG0180002425.01.T01:intron 25.0%
!! ATTTTCTTTTTATGTGGAGT+TGG - Chr1:38284913-38284932 MsG0180002425.01.T01:intron 25.0%
!! CCTGTTTTATGTCTTTTTTT+GGG - Chr1:38285130-38285149 MsG0180002425.01.T01:intron 25.0%
!! CTATGCTCTGATTAAATTTT+AGG - Chr1:38280858-38280877 MsG0180002425.01.T01:three_prime_UTR 25.0%
!! GATTTTTCACATTGTAAACT+GGG - Chr1:38284581-38284600 MsG0180002425.01.T01:CDS 25.0%
!! TAGAAGCCTCTTTAAAAATA+TGG - Chr1:38283913-38283932 MsG0180002425.01.T01:intron 25.0%
!! TATGGATTATAGCAAGTAAT+AGG - Chr1:38283114-38283133 MsG0180002425.01.T01:intron 25.0%
!! TATTACGTTCTTAAGTATTG+AGG + Chr1:38283780-38283799 None:intergenic 25.0%
!! TCTCATCTAAAATACACTAA+AGG - Chr1:38284477-38284496 MsG0180002425.01.T01:intron 25.0%
!! TGTTTAACTCTATTTTCATG+GGG - Chr1:38286175-38286194 MsG0180002425.01.T01:intron 25.0%
!! TTTTAGATGAGACAAAATGA+TGG + Chr1:38284469-38284488 None:intergenic 25.0%
!!! ACAAATTTTGTGATGGAAAA+TGG + Chr1:38282416-38282435 None:intergenic 25.0%
!!! ACAGTAATATCTAACTTGTT+AGG - Chr1:38280736-38280755 MsG0180002425.01.T01:three_prime_UTR 25.0%
!!! ACTCTTGGTTTTTCTATATA+AGG + Chr1:38281043-38281062 None:intergenic 25.0%
!!! ATATTAATCCCCCTTATTTT+GGG - Chr1:38282497-38282516 MsG0180002425.01.T01:intron 25.0%
!!! ATTACGTTCTTAAGTATTGA+GGG + Chr1:38283779-38283798 None:intergenic 25.0%
!!! CAAATTTTGTGATGGAAAAT+GGG + Chr1:38282415-38282434 None:intergenic 25.0%
!!! CGATTTTTTTAAGGGTATAT+TGG - Chr1:38284247-38284266 MsG0180002425.01.T01:intron 25.0%
!!! GCTTGAGTTTGTTTATATTT+TGG - Chr1:38285753-38285772 MsG0180002425.01.T01:intron 25.0%
!!! TAATTTGTTCTTTCACTTAC+TGG + Chr1:38285060-38285079 None:intergenic 25.0%
!!! TACCACCATTACTATTTTTA+TGG - Chr1:38283096-38283115 MsG0180002425.01.T01:intron 25.0%
!!! TATTTTTAAAGAGGCTTCTA+TGG + Chr1:38283913-38283932 None:intergenic 25.0%
AAACAGGTTTACCAATAACA+AGG + Chr1:38285117-38285136 None:intergenic 30.0%
AAATAAGGAAGAGAGATTAG+GGG - Chr1:38284346-38284365 MsG0180002425.01.T01:intron 30.0%
AACAGGTTTACCAATAACAA+GGG + Chr1:38285116-38285135 None:intergenic 30.0%
AAGACATGAAAACATGTGTT+TGG + Chr1:38286916-38286935 None:intergenic 30.0%
AATTACGTCAAAGAAAAGAC+CGG + Chr1:38286279-38286298 None:intergenic 30.0%
AATTTCCAAGAGAGATTGAT+AGG - Chr1:38283951-38283970 MsG0180002425.01.T01:intron 30.0%
ACAAAACTTAATGTGATCAG+CGG + Chr1:38286245-38286264 None:intergenic 30.0%
AGCTATTATGTGAAAGCAAA+TGG - Chr1:38283058-38283077 MsG0180002425.01.T01:intron 30.0%
AGTACATTTAGAAAGAATCC+TGG + Chr1:38281419-38281438 None:intergenic 30.0%
AGTCATTGCCATTAAGATTA+TGG - Chr1:38281390-38281409 MsG0180002425.01.T01:CDS 30.0%
ATATATATGAATAAGGCCGA+GGG + Chr1:38284704-38284723 None:intergenic 30.0%
ATCACAAAATTTGTAGCTAG+TGG - Chr1:38282422-38282441 MsG0180002425.01.T01:intron 30.0%
ATGATGCAACTAAATCACTT+TGG + Chr1:38283313-38283332 None:intergenic 30.0%
ATGATTACTTGGTATAAGGA+CGG + Chr1:38287488-38287507 None:intergenic 30.0%
ATGTAAAATATGACAGCACA+AGG + Chr1:38285938-38285957 None:intergenic 30.0%
ATTACCTTTCCCAAAATAAG+GGG + Chr1:38282509-38282528 None:intergenic 30.0%
ATTAGAATTGTTTGTGCTCA+TGG - Chr1:38285076-38285095 MsG0180002425.01.T01:intron 30.0%
ATTAGATGTGTTGCAATACA+AGG + Chr1:38287018-38287037 None:intergenic 30.0%
ATTCCAAAGAGAGATTAAGT+TGG - Chr1:38284272-38284291 MsG0180002425.01.T01:intron 30.0%
CAAAATAAGGGGGATTAATA+TGG + Chr1:38282498-38282517 None:intergenic 30.0%
CAAAGTCTCTTGAATACTTT+CGG - Chr1:38284559-38284578 MsG0180002425.01.T01:intron 30.0%
CAAGTAATAGGCAATATGAT+TGG - Chr1:38283126-38283145 MsG0180002425.01.T01:intron 30.0%
CAATTACCTTTCCCAAAATA+AGG + Chr1:38282511-38282530 None:intergenic 30.0%
CCCAAAAAAAGACATAAAAC+AGG + Chr1:38285133-38285152 None:intergenic 30.0%
CTAGTCTAGAAGAAGAATTA+AGG + Chr1:38284613-38284632 None:intergenic 30.0%
CTCAAACAAGCATAGAAAAT+AGG + Chr1:38283529-38283548 None:intergenic 30.0%
CTCTGATTTCTATTCACTTA+TGG - Chr1:38287443-38287462 MsG0180002425.01.T01:intron 30.0%
GAAATTCACACTTAGAAGAA+TGG - Chr1:38282868-38282887 MsG0180002425.01.T01:intron 30.0%
GAAGATATGACATGTATACA+AGG + Chr1:38282186-38282205 None:intergenic 30.0%
GAATCTTCTCGTAATCTTTA+CGG - Chr1:38280990-38281009 MsG0180002425.01.T01:intron 30.0%
GCTCTTAAAACACTTAAAAG+TGG - Chr1:38281732-38281751 MsG0180002425.01.T01:intron 30.0%
GTAAAGAACACAAAATCTGA+AGG + Chr1:38286441-38286460 None:intergenic 30.0%
GTATATGCATAAAGGAATGT+TGG - Chr1:38284842-38284861 MsG0180002425.01.T01:intron 30.0%
GTGAATTTCATCAAAAGGTT+TGG + Chr1:38282857-38282876 None:intergenic 30.0%
GTTTACAAAGATCAAGTAGT+AGG + Chr1:38281277-38281296 None:intergenic 30.0%
GTTTGAATCAAAAACATTCC+AGG + Chr1:38282918-38282937 None:intergenic 30.0%
TAAAAATGTGTTGCAACTCT+TGG + Chr1:38281058-38281077 None:intergenic 30.0%
TAACTCTCAAACTCTAATAG+TGG + Chr1:38281938-38281957 None:intergenic 30.0%
TATATATATGAATAAGGCCG+AGG + Chr1:38284705-38284724 None:intergenic 30.0%
TCAGAAAACATTACCAGTAA+TGG - Chr1:38286936-38286955 MsG0180002425.01.T01:intron 30.0%
TGATTTCTATTCACTTATGG+TGG - Chr1:38287446-38287465 MsG0180002425.01.T01:intron 30.0%
TTAAATTGAACTAGTCACTG+TGG - Chr1:38286554-38286573 MsG0180002425.01.T01:intron 30.0%
TTAATCAAATATCATCCTGC+AGG - Chr1:38285632-38285651 MsG0180002425.01.T01:CDS 30.0%
TTGAGAAAGTAGTAAGTAAC+TGG + Chr1:38286796-38286815 None:intergenic 30.0%
TTGGAGTTATGATCAAATGA+AGG + Chr1:38286897-38286916 None:intergenic 30.0%
! AAAAATTGTAAAGGAGGTGT+TGG + Chr1:38283014-38283033 None:intergenic 30.0%
! ACAATAATCTACAAGGTGTT+CGG + Chr1:38287097-38287116 None:intergenic 30.0%
! ACTAGCTACAAATTTTGTGA+TGG + Chr1:38282423-38282442 None:intergenic 30.0%
! AGAGTTGCAACACATTTTTA+AGG - Chr1:38281058-38281077 MsG0180002425.01.T01:intron 30.0%
! AGATTTTCTTGCTTTCTACA+GGG - Chr1:38280477-38280496 MsG0180002425.01.T01:three_prime_UTR 30.0%
! CAACAAAGACTTCTAGAAAA+CGG + Chr1:38283641-38283660 None:intergenic 30.0%
! CACCTCCTTTACAATTTTTA+TGG - Chr1:38283015-38283034 MsG0180002425.01.T01:intron 30.0%
! CTTTTAAATAACTGCTTGGT+CGG + Chr1:38282464-38282483 None:intergenic 30.0%
! GCTTCAGTATTTTATCATCA+AGG - Chr1:38285589-38285608 MsG0180002425.01.T01:CDS 30.0%
! GGATTTTTCACATTGTAAAC+TGG - Chr1:38284580-38284599 MsG0180002425.01.T01:CDS 30.0%
! GTGCTGTCATATTTTACATA+CGG - Chr1:38285939-38285958 MsG0180002425.01.T01:intron 30.0%
! GTTCTACGTGAATCTTTTAA+AGG - Chr1:38283498-38283517 MsG0180002425.01.T01:intron 30.0%
! GTTTAACTCTATTTTCATGG+GGG - Chr1:38286176-38286195 MsG0180002425.01.T01:intron 30.0%
! TGATTTTTGCAACTATGATG+TGG - Chr1:38282666-38282685 MsG0180002425.01.T01:intron 30.0%
!! AAGAGTGTTAACAATTTGCT+TGG - Chr1:38287273-38287292 MsG0180002425.01.T01:intron 30.0%
!! ATACTAATTTTGGCAACTCA+TGG + Chr1:38287313-38287332 None:intergenic 30.0%
!! ATTAAGTTGGCTAGTTAGTT+TGG - Chr1:38284285-38284304 MsG0180002425.01.T01:intron 30.0%
!! CATATTAATCCCCCTTATTT+TGG - Chr1:38282496-38282515 MsG0180002425.01.T01:intron 30.0%
!! CATTAGAGTTTTATACAGCT+TGG - Chr1:38281839-38281858 MsG0180002425.01.T01:intron 30.0%
!! GAATTATGTTGGTAATCAGA+GGG + Chr1:38286498-38286517 None:intergenic 30.0%
!! GCACTTCCATATTTTTAAAG+AGG + Chr1:38283922-38283941 None:intergenic 30.0%
!! GTACAAGAGCATACTAATTT+TGG + Chr1:38287323-38287342 None:intergenic 30.0%
!! TCGTTAAAGAAAGTATTCGA+GGG - Chr1:38286516-38286535 MsG0180002425.01.T01:intron 30.0%
!! TTAGGATTGGCTATTTAGTT+AGG - Chr1:38286317-38286336 MsG0180002425.01.T01:intron 30.0%
!! TTCGTTAAAGAAAGTATTCG+AGG - Chr1:38286515-38286534 MsG0180002425.01.T01:intron 30.0%
!! TTGTTAATGGGTTAGTTAGT+GGG - Chr1:38284008-38284027 MsG0180002425.01.T01:intron 30.0%
!! TTTGTTAATGGGTTAGTTAG+TGG - Chr1:38284007-38284026 MsG0180002425.01.T01:intron 30.0%
!!! ACGTGATAGCTTAGTTTTTT+GGG + Chr1:38282968-38282987 None:intergenic 30.0%
AAACTGTTAGGACAAACCTT+TGG - Chr1:38281862-38281881 MsG0180002425.01.T01:intron 35.0%
AAAGAAGAAAGTGGCAATGT+AGG + Chr1:38283244-38283263 None:intergenic 35.0%
AAAGAGTTCTTGCATAAGTG+GGG + Chr1:38282801-38282820 None:intergenic 35.0%
AAAGATCGGAAACAATATGC+TGG + Chr1:38287369-38287388 None:intergenic 35.0%
AAAGCTACCAACTATACCAA+AGG + Chr1:38281881-38281900 None:intergenic 35.0%
AAATTTGTAGCTAGTGGAGT+TGG - Chr1:38282428-38282447 MsG0180002425.01.T01:intron 35.0%
AACATTACCAGTAATGGTAG+CGG - Chr1:38286942-38286961 MsG0180002425.01.T01:intron 35.0%
AATCATTCAAGGCATACTCA+AGG + Chr1:38281352-38281371 None:intergenic 35.0%
ACCAAACCAGTTGAAATGAT+AGG + Chr1:38282252-38282271 None:intergenic 35.0%
ACCAGAAAGTTTGTACGTTA+AGG + Chr1:38284800-38284819 None:intergenic 35.0%
ACTTCTTCATCTGACCTTAT+TGG - Chr1:38286651-38286670 MsG0180002425.01.T01:intron 35.0%
AGAAATGCATACTACAACCA+GGG + Chr1:38283368-38283387 None:intergenic 35.0%
AGAGTCCACAATAATCTACA+AGG + Chr1:38287104-38287123 None:intergenic 35.0%
AGTCTTTCAATTATCTCTGG+TGG - Chr1:38286697-38286716 MsG0180002425.01.T01:intron 35.0%
AGTTGGCATACAGCAAAATA+TGG + Chr1:38280507-38280526 None:intergenic 35.0%
ATATATGGAGTTGTAAACCC+TGG - Chr1:38283348-38283367 MsG0180002425.01.T01:intron 35.0%
ATCTATATACGGGATGGTAA+AGG + Chr1:38284764-38284783 None:intergenic 35.0%
ATGCCAACTACATTATCAAG+TGG - Chr1:38280518-38280537 MsG0180002425.01.T01:three_prime_UTR 35.0%
ATGTAGTCAAGTCTATGTAG+TGG - Chr1:38285527-38285546 MsG0180002425.01.T01:CDS 35.0%
CAAAGAGTTCTTGCATAAGT+GGG + Chr1:38282802-38282821 None:intergenic 35.0%
CAAGAGATTATGTCAGCATT+TGG - Chr1:38282154-38282173 MsG0180002425.01.T01:intron 35.0%
CAATAAGTGAGCCAATTTAC+TGG - Chr1:38283188-38283207 MsG0180002425.01.T01:intron 35.0%
CACTTATGCAAGAACTCTTT+GGG - Chr1:38282801-38282820 MsG0180002425.01.T01:intron 35.0%
CAGAGATAATTGAAAGACTC+CGG + Chr1:38286696-38286715 None:intergenic 35.0%
CATGAGTCATCTCAAAAGTT+AGG - Chr1:38282736-38282755 MsG0180002425.01.T01:intron 35.0%
CATGTTTGCGTATGTGATTA+GGG - Chr1:38284185-38284204 MsG0180002425.01.T01:intron 35.0%
CCATTAAGATTATGGAAACC+AGG - Chr1:38281398-38281417 MsG0180002425.01.T01:CDS 35.0%
CCTACAGAAAAACTTAAGAG+TGG - Chr1:38280933-38280952 MsG0180002425.01.T01:CDS 35.0%
CCTGGTTTCCATAATCTTAA+TGG + Chr1:38281401-38281420 None:intergenic 35.0%
CTAATCACATACGCAAACAT+GGG + Chr1:38284186-38284205 None:intergenic 35.0%
CTCGAACTTTCAGAGTAATA+AGG + Chr1:38281185-38281204 None:intergenic 35.0%
CTCTTGTACATTGTTCATTC+TGG - Chr1:38287334-38287353 MsG0180002425.01.T01:CDS 35.0%
CTGTATATCTATATACGGGA+TGG + Chr1:38284770-38284789 None:intergenic 35.0%
GAACACCTTGTAGATTATTG+TGG - Chr1:38287096-38287115 MsG0180002425.01.T01:intron 35.0%
GAATCAGCTACAAACTGATA+AGG - Chr1:38281779-38281798 MsG0180002425.01.T01:intron 35.0%
GCAATCAAGAAAGAAGAAAG+TGG + Chr1:38283253-38283272 None:intergenic 35.0%
GTCCCTTGTACTCTTAAAAA+TGG - Chr1:38287515-38287534 MsG0180002425.01.T01:intron 35.0%
GTTTCAGTTTGTGACATTAG+AGG - Chr1:38286837-38286856 MsG0180002425.01.T01:intron 35.0%
GTTTCATGAAAATGCGTGAA+TGG - Chr1:38282761-38282780 MsG0180002425.01.T01:intron 35.0%
TAAAGCCTATCAATCTCTCT+TGG + Chr1:38283959-38283978 None:intergenic 35.0%
TAGCCAACTTAATCTCTCTT+TGG + Chr1:38284278-38284297 None:intergenic 35.0%
TATACAGCTTGGAAACTGTT+AGG - Chr1:38281850-38281869 MsG0180002425.01.T01:intron 35.0%
TATATATGAATAAGGCCGAG+GGG + Chr1:38284703-38284722 None:intergenic 35.0%
TATTCAATAGCATTGCTGTC+CGG - Chr1:38286674-38286693 MsG0180002425.01.T01:intron 35.0%
TATTGAACTATATGCTGGGA+CGG + Chr1:38287401-38287420 None:intergenic 35.0%
TATTGCAACACATCTAATCC+AGG - Chr1:38287020-38287039 MsG0180002425.01.T01:intron 35.0%
TCCTATCATTTCAACTGGTT+TGG - Chr1:38282248-38282267 MsG0180002425.01.T01:intron 35.0%
TCTTTGACGTAATTCACTAC+AGG - Chr1:38286285-38286304 MsG0180002425.01.T01:intron 35.0%
TGACACAATGGTCAAATATG+AGG + Chr1:38283734-38283753 None:intergenic 35.0%
TGAGAAAAGCCAATAATGAG+TGG + Chr1:38287553-38287572 None:intergenic 35.0%
TGTAGTCAAGTCTATGTAGT+GGG - Chr1:38285528-38285547 MsG0180002425.01.T01:CDS 35.0%
TTACCTTTCCCAAAATAAGG+GGG + Chr1:38282508-38282527 None:intergenic 35.0%
TTATACTCTAACGCAAAGGT+AGG + Chr1:38281981-38282000 None:intergenic 35.0%
TTTACCAATAACAAGGGCAA+AGG + Chr1:38285110-38285129 None:intergenic 35.0%
TTTCTTGTAGCTATTGGACT+GGG - Chr1:38285714-38285733 MsG0180002425.01.T01:intron 35.0%
! ACGTTTGGATGTTTGTTAAC+TGG + Chr1:38281464-38281483 None:intergenic 35.0%
! ATGCATATAATTTGGAGCCA+TGG - Chr1:38286470-38286489 MsG0180002425.01.T01:intron 35.0%
! ATTGTGGCCCTTTAAGAATT+GGG - Chr1:38284530-38284549 MsG0180002425.01.T01:intron 35.0%
! CAATAATCTACAAGGTGTTC+GGG + Chr1:38287096-38287115 None:intergenic 35.0%
! CAGATTTTCTTGCTTTCTAC+AGG - Chr1:38280476-38280495 MsG0180002425.01.T01:three_prime_UTR 35.0%
! CCACTCTTAAGTTTTTCTGT+AGG + Chr1:38280936-38280955 None:intergenic 35.0%
! TATACCTTTGCCCTTGTTAT+TGG - Chr1:38285103-38285122 MsG0180002425.01.T01:intron 35.0%
! TATTGTGGCCCTTTAAGAAT+TGG - Chr1:38284529-38284548 MsG0180002425.01.T01:intron 35.0%
! TGATTTTATCGATCGGAGAA+GGG + Chr1:38281817-38281836 None:intergenic 35.0%
! TTGATTTTATCGATCGGAGA+AGG + Chr1:38281818-38281837 None:intergenic 35.0%
! TTTTCTTGTAGCTATTGGAC+TGG - Chr1:38285713-38285732 MsG0180002425.01.T01:intron 35.0%
!! AATTTCCAGCTTTTCAAGCT+AGG - Chr1:38281908-38281927 MsG0180002425.01.T01:intron 35.0%
!! ACACCACTTGATAATGTAGT+TGG + Chr1:38280524-38280543 None:intergenic 35.0%
!! CGAAAGTATTCAAGAGACTT+TGG + Chr1:38284561-38284580 None:intergenic 35.0%
!! CGAATTATGTTGGTAATCAG+AGG + Chr1:38286499-38286518 None:intergenic 35.0%
!! CGTTAAAGAAAGTATTCGAG+GGG - Chr1:38286517-38286536 MsG0180002425.01.T01:intron 35.0%
!! GACGGACTGAAAATAAAGAT+CGG + Chr1:38287383-38287402 None:intergenic 35.0%
!! GAGTAATAAGGAAGTGTTAG+AGG + Chr1:38281173-38281192 None:intergenic 35.0%
!! GTAACTAACACTGACTTTCA+CGG - Chr1:38286618-38286637 MsG0180002425.01.T01:intron 35.0%
!!! AGGAATATCTAGCTCTCTTT+TGG - Chr1:38285210-38285229 MsG0180002425.01.T01:intron 35.0%
!!! CACGTGATAGCTTAGTTTTT+TGG + Chr1:38282969-38282988 None:intergenic 35.0%
!!! CTGTGGATTCGTTGTTTTAA+TGG - Chr1:38286571-38286590 MsG0180002425.01.T01:intron 35.0%
!!! GGCCATTTTTAAGAGTACAA+GGG + Chr1:38287520-38287539 None:intergenic 35.0%
!!! TGGCCATTTTTAAGAGTACA+AGG + Chr1:38287521-38287540 None:intergenic 35.0%
AAACGTAACAGTAGCAGAGA+AGG - Chr1:38281478-38281497 MsG0180002425.01.T01:intron 40.0%
AACGTAACAGTAGCAGAGAA+GGG - Chr1:38281479-38281498 MsG0180002425.01.T01:intron 40.0%
AGACATCCACCACTCATTAT+TGG - Chr1:38287541-38287560 MsG0180002425.01.T01:CDS 40.0%
AGAGATTAGGGGTTTCACTT+AGG - Chr1:38284357-38284376 MsG0180002425.01.T01:intron 40.0%
AGGCACATGGCCTATAAATA+AGG - Chr1:38284331-38284350 MsG0180002425.01.T01:intron 40.0%
AGGTCAAGTATTCTTTCCTG+AGG - Chr1:38281601-38281620 MsG0180002425.01.T01:intron 40.0%
ATAGGCAATATGATTGGGCA+AGG - Chr1:38283132-38283151 MsG0180002425.01.T01:intron 40.0%
ATATATGAATAAGGCCGAGG+GGG + Chr1:38284702-38284721 None:intergenic 40.0%
ATCCAGCATACATGGAGTTA+TGG - Chr1:38286596-38286615 MsG0180002425.01.T01:intron 40.0%
ATTTGGAGAATCTGGGTTAC+TGG - Chr1:38286987-38287006 MsG0180002425.01.T01:intron 40.0%
CAAGCTCCTATCATTTCAAC+TGG - Chr1:38282243-38282262 MsG0180002425.01.T01:intron 40.0%
CACTACAGGATGCTATTCTT+AGG - Chr1:38286299-38286318 MsG0180002425.01.T01:intron 40.0%
CAGAAATGCATACTACAACC+AGG + Chr1:38283369-38283388 None:intergenic 40.0%
CAGGATGCTATTCTTAGGAT+TGG - Chr1:38286304-38286323 MsG0180002425.01.T01:intron 40.0%
CCAAAGAGTTCTTGCATAAG+TGG + Chr1:38282803-38282822 None:intergenic 40.0%
CCAACTTTCACTTGACACAA+TGG + Chr1:38283746-38283765 None:intergenic 40.0%
CCACTTATGCAAGAACTCTT+TGG - Chr1:38282800-38282819 MsG0180002425.01.T01:intron 40.0%
CCATGTTTGCGTATGTGATT+AGG - Chr1:38284184-38284203 MsG0180002425.01.T01:intron 40.0%
CCATTGTGTCAAGTGAAAGT+TGG - Chr1:38283743-38283762 MsG0180002425.01.T01:intron 40.0%
CCTAATCACATACGCAAACA+TGG + Chr1:38284187-38284206 None:intergenic 40.0%
CGGAGTCTTTCAATTATCTC+TGG - Chr1:38286694-38286713 MsG0180002425.01.T01:intron 40.0%
CTTGGGAGTAAGAAGATGAA+AGG - Chr1:38280968-38280987 MsG0180002425.01.T01:intron 40.0%
GAAAAGCCAATAATGAGTGG+TGG + Chr1:38287550-38287569 None:intergenic 40.0%
GAAGCAGCAATGTAGCATAT+AGG + Chr1:38284880-38284899 None:intergenic 40.0%
GACTATGAGAGCAATTGTGA+TGG + Chr1:38280431-38280450 None:intergenic 40.0%
GCCTTAACGTACAAACTTTC+TGG - Chr1:38284796-38284815 MsG0180002425.01.T01:intron 40.0%
GGACAAACCTTTGGTATAGT+TGG - Chr1:38281871-38281890 MsG0180002425.01.T01:intron 40.0%
GGACTGCTTACATGATTACT+TGG + Chr1:38287499-38287518 None:intergenic 40.0%
GGACTTCCCCAATTCTTAAA+GGG + Chr1:38284540-38284559 None:intergenic 40.0%
GGTCAAGTATTCTTTCCTGA+GGG - Chr1:38281602-38281621 MsG0180002425.01.T01:intron 40.0%
GTCAACATCACATTCTCGTT+CGG - Chr1:38284152-38284171 MsG0180002425.01.T01:intron 40.0%
TACCATAACTCCATGTATGC+TGG + Chr1:38286601-38286620 None:intergenic 40.0%
TAGGCAATATGATTGGGCAA+GGG - Chr1:38283133-38283152 MsG0180002425.01.T01:intron 40.0%
TCAACATCACATTCTCGTTC+GGG - Chr1:38284153-38284172 MsG0180002425.01.T01:intron 40.0%
TCGGAAACAATATGCTGGAA+CGG + Chr1:38287364-38287383 None:intergenic 40.0%
TCTATAACCGCTACCATTAC+TGG + Chr1:38286952-38286971 None:intergenic 40.0%
TGATCCCTGAGAAAAGCTTA+CGG + Chr1:38285368-38285387 None:intergenic 40.0%
TGGACTTCCCCAATTCTTAA+AGG + Chr1:38284541-38284560 None:intergenic 40.0%
TTCTCTGCTACTGTTACGTT+TGG + Chr1:38281479-38281498 None:intergenic 40.0%
! ACACTTAGAAGAATGGGCTT+GGG - Chr1:38282875-38282894 MsG0180002425.01.T01:intron 40.0%
! AGAAACCGTAAGCTTTTCTC+AGG - Chr1:38285360-38285379 MsG0180002425.01.T01:intron 40.0%
! GAAACCGTAAGCTTTTCTCA+GGG - Chr1:38285361-38285380 MsG0180002425.01.T01:intron 40.0%
! GACAAAGTGTCTAAGCTCAA+AGG + Chr1:38281638-38281657 None:intergenic 40.0%
! TAATGGACATCCAGCATACA+TGG - Chr1:38286588-38286607 MsG0180002425.01.T01:intron 40.0%
! TATGTAGTGGGAGAAGGTTT+CGG - Chr1:38285540-38285559 MsG0180002425.01.T01:CDS 40.0%
! TCATCATTGATTGTCGTCTG+TGG - Chr1:38287202-38287221 MsG0180002425.01.T01:intron 40.0%
! TTGTGGCCCTTTAAGAATTG+GGG - Chr1:38284531-38284550 MsG0180002425.01.T01:intron 40.0%
! TTTCATTGCTTTGAATGGGC+AGG - Chr1:38283476-38283495 MsG0180002425.01.T01:intron 40.0%
!! AACTTAAGAGTGGCTTGCTT+AGG - Chr1:38280943-38280962 MsG0180002425.01.T01:CDS 40.0%
!! ACTTAGGTGTCATTGGTCTT+TGG - Chr1:38284373-38284392 MsG0180002425.01.T01:intron 40.0%
!! ATAATGAGTGGTGGATGTCT+TGG + Chr1:38287541-38287560 None:intergenic 40.0%
!! CTAATTTTGGCAACTCATGG+TGG + Chr1:38287310-38287329 None:intergenic 40.0%
!! TGGTATAGTTGGTAGCTTTG+TGG - Chr1:38281882-38281901 MsG0180002425.01.T01:intron 40.0%
!!! AATCCCCCTTATTTTGGGAA+AGG - Chr1:38282502-38282521 MsG0180002425.01.T01:intron 40.0%
AAAGCCAATGGCACGTATTG+TGG - Chr1:38284514-38284533 MsG0180002425.01.T01:intron 45.0%
ACTCATACTAGTTGCAAGCC+AGG - Chr1:38286759-38286778 MsG0180002425.01.T01:intron 45.0%
ACTTTGATTCTGCAGCTTGC+TGG - Chr1:38280685-38280704 MsG0180002425.01.T01:three_prime_UTR 45.0%
AGCAAATTCCTACCAGGCTA+AGG + Chr1:38285401-38285420 None:intergenic 45.0%
AGCAAGCTGCAGAATCAAAG+TGG + Chr1:38280686-38280705 None:intergenic 45.0%
AGTATTCTTTCCTGAGGGTG+AGG - Chr1:38281607-38281626 MsG0180002425.01.T01:intron 45.0%
ATATCATCCTGCAGGTACCT+TGG - Chr1:38285640-38285659 MsG0180002425.01.T01:CDS 45.0%
ATGTAATCCACAGCCTCTTC+AGG - Chr1:38281573-38281592 MsG0180002425.01.T01:intron 45.0%
ATGTCAAGGTGGCTTAAGAG+AGG - Chr1:38287164-38287183 MsG0180002425.01.T01:intron 45.0%
ATGTGATTAGGGTTCACAGG+AGG - Chr1:38284196-38284215 MsG0180002425.01.T01:intron 45.0%
CAACATCACATTCTCGTTCG+GGG - Chr1:38284154-38284173 MsG0180002425.01.T01:intron 45.0%
CCAATGACACCAAAAGCCAA+TGG - Chr1:38284502-38284521 MsG0180002425.01.T01:intron 45.0%
CGTATGTGATTAGGGTTCAC+AGG - Chr1:38284193-38284212 MsG0180002425.01.T01:intron 45.0%
GAAACACATCATGCTGCACA+TGG - Chr1:38287246-38287265 MsG0180002425.01.T01:intron 45.0%
GAAACCTAGCAGTAAGCTCA+TGG + Chr1:38282604-38282623 None:intergenic 45.0%
GAAGGAAGCAAATTCCTACC+AGG + Chr1:38285407-38285426 None:intergenic 45.0%
GGATACAAGTGAGCAAGTCA+AGG - Chr1:38285661-38285680 MsG0180002425.01.T01:intron 45.0%
GTGGTGCATTTGGAGAATCT+GGG - Chr1:38286980-38286999 MsG0180002425.01.T01:intron 45.0%
TAACTGGTTGAGCTTTCACC+TGG + Chr1:38286780-38286799 None:intergenic 45.0%
TCTAGCACTTGCAATGCAGT+TGG - Chr1:38280643-38280662 MsG0180002425.01.T01:three_prime_UTR 45.0%
TCTCCAAATGCACCACAAAG+TGG + Chr1:38286976-38286995 None:intergenic 45.0%
TGCAACTAGTATGAGTGCGT+TGG + Chr1:38286755-38286774 None:intergenic 45.0%
TGGACTTGAAACACGACTCT+AGG - Chr1:38281133-38281152 MsG0180002425.01.T01:intron 45.0%
TGTGGTGCATTTGGAGAATC+TGG - Chr1:38286979-38286998 MsG0180002425.01.T01:intron 45.0%
TTAAGCCACCTTGACATTGC+CGG + Chr1:38287161-38287180 None:intergenic 45.0%
! ATCACGTGAAAGCACATCGA+TGG - Chr1:38282981-38283000 MsG0180002425.01.T01:intron 45.0%
! CAAGTCTATGTAGTGGGAGA+AGG - Chr1:38285534-38285553 MsG0180002425.01.T01:CDS 45.0%
! CACACTTAGAAGAATGGGCT+TGG - Chr1:38282874-38282893 MsG0180002425.01.T01:intron 45.0%
! CACTTAGAAGAATGGGCTTG+GGG - Chr1:38282876-38282895 MsG0180002425.01.T01:intron 45.0%
! CAGTGCATTTTTCCTTAGCC+TGG - Chr1:38285386-38285405 MsG0180002425.01.T01:intron 45.0%
! GACTTGCTCACTTGTATCCA+AGG + Chr1:38285660-38285679 None:intergenic 45.0%
! GCATTTTTCCTTAGCCTGGT+AGG - Chr1:38285390-38285409 MsG0180002425.01.T01:intron 45.0%
! GGCATTTTCTTCACGGGAAA+AGG + Chr1:38286734-38286753 None:intergenic 45.0%
! GGGTTTCACTTAGGTGTCAT+TGG - Chr1:38284366-38284385 MsG0180002425.01.T01:intron 45.0%
! GTTAGCCTAGCTTGAAAAGC+TGG + Chr1:38281916-38281935 None:intergenic 45.0%
! TCGTCTGTGGATTGATATGC+TGG - Chr1:38287215-38287234 MsG0180002425.01.T01:intron 45.0%
!! AAGTGAGTGCCACTTTAGAG+TGG + Chr1:38285972-38285991 None:intergenic 45.0%
!! AGTGGCTTGCTTAGGATCTT+GGG - Chr1:38280951-38280970 MsG0180002425.01.T01:CDS 45.0%
!! CTCTAAAGTGGCACTCACTT+TGG - Chr1:38285972-38285991 MsG0180002425.01.T01:intron 45.0%
!! GTGCGTTGGCATTTTCTTCA+CGG + Chr1:38286741-38286760 None:intergenic 45.0%
!! TCACTTTCACTTTTCCCCCT+CGG - Chr1:38284685-38284704 MsG0180002425.01.T01:intron 45.0%
!! TGCGTTGGCATTTTCTTCAC+GGG + Chr1:38286740-38286759 None:intergenic 45.0%
!!! CAATACGTGCCATTGGCTTT+TGG + Chr1:38284514-38284533 None:intergenic 45.0%
!!! CCATTGGCTTTTGGTGTCAT+TGG + Chr1:38284505-38284524 None:intergenic 45.0%
!!! TTTTTGGGTGTTCAGCTGAC+AGG - Chr1:38285145-38285164 MsG0180002425.01.T01:intron 45.0%
ACCAGTGAGCCACGTTCAAT+AGG - Chr1:38284104-38284123 MsG0180002425.01.T01:intron 50.0%
ACCTATTGAACGTGGCTCAC+TGG + Chr1:38284108-38284127 None:intergenic 50.0%
AGACAATCCCGGCAATGTCA+AGG - Chr1:38287150-38287169 MsG0180002425.01.T01:intron 50.0%
AGCAGTAAGCTCATGGAAGG+AGG + Chr1:38282597-38282616 None:intergenic 50.0%
ATGCGTCGCAAAGACAATCC+CGG - Chr1:38287139-38287158 MsG0180002425.01.T01:intron 50.0%
CCTAGCAGTAAGCTCATGGA+AGG + Chr1:38282600-38282619 None:intergenic 50.0%
CCTTCCATGAGCTTACTGCT+AGG - Chr1:38282597-38282616 MsG0180002425.01.T01:intron 50.0%
CTTGACCTATGAGCCTGAAG+AGG + Chr1:38281589-38281608 None:intergenic 50.0%
GGAGTCATCATGCTGACACT+AGG + Chr1:38284743-38284762 None:intergenic 50.0%
TAAGCCACCTTGACATTGCC+GGG + Chr1:38287160-38287179 None:intergenic 50.0%
TAGTGGGAGAAGGTTTCGGT+GGG - Chr1:38285544-38285563 MsG0180002425.01.T01:CDS 50.0%
TATTGAACGTGGCTCACTGG+TGG + Chr1:38284105-38284124 None:intergenic 50.0%
TGAGCCACGTTCAATAGGTG+TGG - Chr1:38284109-38284128 MsG0180002425.01.T01:intron 50.0%
TGCTGGAGCAAATACTGCAC+TGG - Chr1:38280702-38280721 MsG0180002425.01.T01:three_prime_UTR 50.0%
TGTCAATCGCGCCTCTATAG+CGG - Chr1:38284040-38284059 MsG0180002425.01.T01:intron 50.0%
! ATTCCAGGGTTTGCTCCTTG+TGG + Chr1:38282903-38282922 None:intergenic 50.0%
! CTTGTATCCAAGGTACCTGC+AGG + Chr1:38285650-38285669 None:intergenic 50.0%
! GAGCCACTTTGTGGTGCATT+TGG - Chr1:38286970-38286989 MsG0180002425.01.T01:intron 50.0%
! GCGGTTATAGAGCCACTTTG+TGG - Chr1:38286961-38286980 MsG0180002425.01.T01:intron 50.0%
!! AAGTGGTGTTGCACTTACCC+AGG - Chr1:38280535-38280554 MsG0180002425.01.T01:three_prime_UTR 50.0%
!! GAGTGGCTTGCTTAGGATCT+TGG - Chr1:38280950-38280969 MsG0180002425.01.T01:CDS 50.0%
!! TGAGTGCCACTTTAGAGTGG+CGG + Chr1:38285969-38285988 None:intergenic 50.0%
!! TTGGTAATCAGAGGGTGCCA+TGG + Chr1:38286490-38286509 None:intergenic 50.0%
AAAGGAGCTACCTCACCCTC+AGG + Chr1:38281620-38281639 None:intergenic 55.0%
AATAGGTGTGGCGGTCACAG+CGG - Chr1:38284121-38284140 MsG0180002425.01.T01:intron 55.0%
ACCGCCACACCTATTGAACG+TGG + Chr1:38284116-38284135 None:intergenic 55.0%
AGGGCCACAATACGTGCCAT+TGG + Chr1:38284521-38284540 None:intergenic 55.0%
CAATCCCGGCAATGTCAAGG+TGG - Chr1:38287153-38287172 MsG0180002425.01.T01:intron 55.0%
CACAGCCTCTTCAGGCTCAT+AGG - Chr1:38281581-38281600 MsG0180002425.01.T01:intron 55.0%
CATGTGCAAAAGACCCCCAC+AGG + Chr1:38286212-38286231 None:intergenic 55.0%
CTATGAGCCTGAAGAGGCTG+TGG + Chr1:38281583-38281602 None:intergenic 55.0%
GCCACGTTCAATAGGTGTGG+CGG - Chr1:38284112-38284131 MsG0180002425.01.T01:intron 55.0%
GGGGGTGATACTTGACCTGT+GGG - Chr1:38286194-38286213 MsG0180002425.01.T01:intron 55.0%
GGGGTGATACTTGACCTGTG+GGG - Chr1:38286195-38286214 MsG0180002425.01.T01:intron 55.0%
GGGTGATACTTGACCTGTGG+GGG - Chr1:38286196-38286215 MsG0180002425.01.T01:intron 55.0%
GTCAATCGCGCCTCTATAGC+GGG - Chr1:38284041-38284060 MsG0180002425.01.T01:intron 55.0%
TGGGGGTGATACTTGACCTG+TGG - Chr1:38286193-38286212 MsG0180002425.01.T01:intron 55.0%
! GTAGTGGGAGAAGGTTTCGG+TGG - Chr1:38285543-38285562 MsG0180002425.01.T01:CDS 55.0%
!! ACTGGTGGAAGGTGTTGCAC+AGG + Chr1:38284090-38284109 None:intergenic 55.0%
GAACGTGGCTCACTGGTGGA+AGG + Chr1:38284101-38284120 None:intergenic 60.0%
GGTCCACAAGGAGCAAACCC+TGG - Chr1:38282897-38282916 MsG0180002425.01.T01:intron 60.0%
TCTGCGATCGCCCGCTATAG+AGG + Chr1:38284054-38284073 None:intergenic 60.0%
! GAATGGGCTTGGGGTCCACA+AGG - Chr1:38282885-38282904 MsG0180002425.01.T01:intron 60.0%
! GGACCACCGCCACTCTAAAG+TGG - Chr1:38285960-38285979 MsG0180002425.01.T01:intron 60.0%
!! GTGCCACTTTAGAGTGGCGG+TGG + Chr1:38285966-38285985 None:intergenic 60.0%
!! TATAGCGGGCGATCGCAGAG+CGG - Chr1:38284055-38284074 MsG0180002425.01.T01:intron 60.0%
GCGATCGCAGAGCGGTGGTG+AGG - Chr1:38284063-38284082 MsG0180002425.01.T01:intron 70.0%
AGCGGGCGATCGCAGAGCGG+TGG - Chr1:38284058-38284077 MsG0180002425.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 38280418 38287670 38280418 ID=MsG0180002425.01;Name=MsG0180002425.01
Chr1 mRNA 38280418 38287670 38280418 ID=MsG0180002425.01.T01;Parent=MsG0180002425.01;Name=MsG0180002425.01.T01;_AED=0.45;_eAED=0.52;_QI=0|0.62|0.44|1|0|0|9|490|299
Chr1 exon 38287532 38287670 38287532 ID=MsG0180002425.01.T01:exon:12950;Parent=MsG0180002425.01.T01
Chr1 exon 38287320 38287426 38287320 ID=MsG0180002425.01.T01:exon:12951;Parent=MsG0180002425.01.T01
Chr1 exon 38285517 38285678 38285517 ID=MsG0180002425.01.T01:exon:12952;Parent=MsG0180002425.01.T01
Chr1 exon 38284569 38284635 38284569 ID=MsG0180002425.01.T01:exon:12953;Parent=MsG0180002425.01.T01
Chr1 exon 38282681 38282748 38282681 ID=MsG0180002425.01.T01:exon:12954;Parent=MsG0180002425.01.T01
Chr1 exon 38282349 38282434 38282349 ID=MsG0180002425.01.T01:exon:12955;Parent=MsG0180002425.01.T01
Chr1 exon 38281308 38281437 38281308 ID=MsG0180002425.01.T01:exon:12956;Parent=MsG0180002425.01.T01
Chr1 exon 38281080 38281148 38281080 ID=MsG0180002425.01.T01:exon:12957;Parent=MsG0180002425.01.T01
Chr1 exon 38280418 38280979 38280418 ID=MsG0180002425.01.T01:exon:12958;Parent=MsG0180002425.01.T01
Chr1 CDS 38287532 38287670 38287532 ID=MsG0180002425.01.T01:cds;Parent=MsG0180002425.01.T01
Chr1 CDS 38287320 38287426 38287320 ID=MsG0180002425.01.T01:cds;Parent=MsG0180002425.01.T01
Chr1 CDS 38285517 38285678 38285517 ID=MsG0180002425.01.T01:cds;Parent=MsG0180002425.01.T01
Chr1 CDS 38284569 38284635 38284569 ID=MsG0180002425.01.T01:cds;Parent=MsG0180002425.01.T01
Chr1 CDS 38282681 38282748 38282681 ID=MsG0180002425.01.T01:cds;Parent=MsG0180002425.01.T01
Chr1 CDS 38282349 38282434 38282349 ID=MsG0180002425.01.T01:cds;Parent=MsG0180002425.01.T01
Chr1 CDS 38281308 38281437 38281308 ID=MsG0180002425.01.T01:cds;Parent=MsG0180002425.01.T01
Chr1 CDS 38281080 38281148 38281080 ID=MsG0180002425.01.T01:cds;Parent=MsG0180002425.01.T01
Chr1 CDS 38280908 38280979 38280908 ID=MsG0180002425.01.T01:cds;Parent=MsG0180002425.01.T01
Chr1 three_prime_UTR 38280418 38280907 38280418 ID=MsG0180002425.01.T01:three_prime_utr;Parent=MsG0180002425.01.T01
Gene Sequence

>MsG0180002425.01.T01

ATGCACTATTCCATCACAATTGCTCTCATAGTCACCAATTTTCATGCAATTCAAGATACAGATTTTCTTGCTTTCTACAGGGTTAGCCATATTTTGCTGTATGCCAACTACATTATCAAGTGGTGTTGCACTTACCCAGTTGGTTTTTATCTGAGTTTTGCCACTTTGATTCTGCAGCTTGCTGGAGCAAATACTGCACTGGCTCTTGCAATGACAGTAATATCTAACTTGTTAGGAATATTAATCATCCCATTTTCCATCACAAAATTTGTAGCTAGTGGAGTTGGAGTGACTTTACCGACCAAGCAGTTATTTAAAAGTCTTGTTCTTACCATATTAATCCCCCTTATTTTGGGAAAGGTAATTGAGTTTTCTCATTCACATATCTTTGATACAGAATATGCTATTTTCGTTAAAAGTATTTTAATATTTTTCATTGCTTTGAATGGGCAGGTTCTACGTGAATCTTTTAAAGATGTTGCTGACTTTGTTGACAGAAACCGTAAGCTTTTCTCAGGGATCAGTGCATTTTTCCTTAGCCTGGTACCTTGGATACAAGTGAGCAAGTCAAGGTCACTTCTGTTAATAGTGAAGCCCAAAGTTTTTCTTGTAGCTATTGGACTGGGAGCACTTCTTCATCTGACCTTATTGGTATTCAATAGCATTGCTGTCCGGAGTCTTTCAATTATCTCTGGTGGTAGAAAGTCAACCTTTTCCCGTGAAGAAAATGCCAACGCACTCATACTAGTTGCAAGCCAGAAAACATTACCAGTAATGGTAGCGGTTATAGAGCCACTTTGTGGTGCATTTGGAGAATCTGGGTTACTGATTATTGTGGACTCTTTTCTTGTCAACTTCATGCGTCGCAAAGACAATCCCGGCAATGTCAAGGTGGCTTAA

Protein sequence

>MsG0180002425.01.T01

MHYSITIALIVTNFHAIQDTDFLAFYRVSHILLYANYIIKWCCTYPVGFYLSFATLILQLAGANTALALAMTVISNLLGILIIPFSITKFVASGVGVTLPTKQLFKSLVLTILIPLILGKVIEFSHSHIFDTEYAIFVKSILIFFIALNGQVLRESFKDVADFVDRNRKLFSGISAFFLSLVPWIQVSKSRSLLLIVKPKVFLVAIGLGALLHLTLLVFNSIAVRSLSIISGGRKSTFSREENANALILVASQKTLPVMVAVIEPLCGAFGESGLLIIVDSFLVNFMRRKDNPGNVKVA*