AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016056.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016056.01.T01 MTR_3g082680 90.520 327 26 4 3 327 1 324 0.0 568
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016056.01.T01 AT2G04360 60.662 272 103 2 57 327 49 317 3.15e-119 346
MsG0380016056.01.T01 AT2G04360 52.716 313 103 3 57 327 49 358 2.91e-111 328
MsG0380016056.01.T01 AT2G04360 67.150 207 65 1 121 327 17 220 2.16e-100 295
MsG0380016056.01.T01 AT2G04360 56.682 217 89 3 57 271 49 262 3.41e-84 255

Find 97 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCAACATTGGCACCATTT+TGG 0.183228 3:-78487628 MsG0380016056.01.T01:CDS
AGACTTTGAACTTCTCTTTA+AGG 0.224582 3:+78487126 None:intergenic
AACAATATTGACATCCATTT+AGG 0.286817 3:-78487194 MsG0380016056.01.T01:three_prime_UTR
AATCAGATATTGCTTGCTTC+GGG 0.302397 3:-78487984 MsG0380016056.01.T01:intron
AGTATCATTGATACCGTTGC+TGG 0.321004 3:-78487443 MsG0380016056.01.T01:CDS
TGAAAGAAGTTTGATGAATA+TGG 0.324094 3:-78489824 MsG0380016056.01.T01:exon
TGTTTCTGAATGGTATATAA+TGG 0.324424 3:-78489285 MsG0380016056.01.T01:CDS
TCTGCAAAGATATGCCTAAA+TGG 0.325736 3:+78487180 None:intergenic
AAATGTGTATTCATATTCAT+TGG 0.332674 3:+78487318 None:intergenic
ATATCATTGTAAACCCAAAA+TGG 0.351254 3:+78487614 None:intergenic
TTGAAATCGATTGTTGAGTT+TGG 0.355380 3:-78487280 MsG0380016056.01.T01:three_prime_UTR
GGTTTCCAGAGCACAAAATA+AGG 0.356685 3:+78488284 None:intergenic
GCAGGTTTGACAAAGGTTCT+TGG 0.356810 3:-78487474 MsG0380016056.01.T01:intron
TACCTACCGGTGTTTGGTTA+GGG 0.362034 3:+78489467 None:intergenic
GTTTCTGAATGGTATATAAT+GGG 0.364420 3:-78489284 MsG0380016056.01.T01:CDS
AGGAGGAGGGTAAAAGAGAT+TGG 0.366095 3:-78489552 MsG0380016056.01.T01:CDS
TTACCTACCGGTGTTTGGTT+AGG 0.368764 3:+78489466 None:intergenic
TATAATGGGTTTGTGGCCTT+TGG 0.371657 3:-78489270 MsG0380016056.01.T01:CDS
AACACTGCTACTCTGTTTGT+TGG 0.388300 3:+78489585 None:intergenic
TTGAGCTCTGCTTCTTCGAC+AGG 0.390157 3:+78488251 None:intergenic
AGATATTACCTACCGGTGTT+TGG 0.402179 3:+78489461 None:intergenic
AATGGATGTCAATATTGTTA+TGG 0.407950 3:+78487198 None:intergenic
AACAATAACAGTAGTGGCCT+CGG 0.412664 3:-78489725 MsG0380016056.01.T01:CDS
AAGTTACAAGTTACGAGATT+GGG 0.415044 3:+78489784 None:intergenic
AGCAACGGTATCAATGATAC+TGG 0.416506 3:+78487445 None:intergenic
GAATCAGATATTGCTTGCTT+CGG 0.421157 3:-78487985 MsG0380016056.01.T01:intron
ATTTGCTTTCCCTGCAGTAC+TGG 0.425676 3:+78487904 None:intergenic
TGTTGAGGAGAAGGAGGAGG+AGG 0.426890 3:-78489566 MsG0380016056.01.T01:CDS
GAAGTTACAAGTTACGAGAT+TGG 0.430350 3:+78489783 None:intergenic
TTGCTGCTACTCCATCATTT+CGG 0.432825 3:-78489642 MsG0380016056.01.T01:CDS
CGGATTCACTCTGACTCAAC+AGG 0.441033 3:+78487361 None:intergenic
TTGAATTTGAAAGGAGATGA+TGG 0.448078 3:-78489329 MsG0380016056.01.T01:CDS
ATATTGCTTGCTTCGGGGAT+AGG 0.448524 3:-78487978 MsG0380016056.01.T01:CDS
TCTTCGACAGGAGGCGGTGG+AGG 0.459561 3:+78488263 None:intergenic
ATCGATTGTTGAGTTTGGTT+GGG 0.465844 3:-78487275 MsG0380016056.01.T01:three_prime_UTR
GAGTAGCAGTGTTGAGGAGA+AGG 0.466144 3:-78489575 MsG0380016056.01.T01:CDS
CTACTCTTTCTCCGAAATGA+TGG 0.467944 3:+78489631 None:intergenic
ATAGTTTACGCTGGTATAGC+CGG 0.480871 3:-78487951 MsG0380016056.01.T01:CDS
TTCATATTCATTGGAGGCAT+CGG 0.483982 3:+78487327 None:intergenic
TTCTTTCCACACATCTTCCC+CGG 0.488058 3:+78487932 None:intergenic
TAGCAGTGTTGAGGAGAAGG+AGG 0.491134 3:-78489572 MsG0380016056.01.T01:CDS
GCTTCTTCGACAGGAGGCGG+TGG 0.494152 3:+78488260 None:intergenic
AATCGATTGTTGAGTTTGGT+TGG 0.498339 3:-78487276 MsG0380016056.01.T01:three_prime_UTR
GTATCATTGATACCGTTGCT+GGG 0.498953 3:-78487442 MsG0380016056.01.T01:CDS
TAGTTTACGCTGGTATAGCC+GGG 0.502289 3:-78487950 MsG0380016056.01.T01:CDS
CAGTGTTGAGGAGAAGGAGG+AGG 0.505585 3:-78489569 MsG0380016056.01.T01:CDS
TTTCAACTTCAAACCGCACA+AGG 0.505855 3:+78489842 None:intergenic
GCAGACAGGAAGGGCCATAC+AGG 0.516734 3:+78488338 None:intergenic
TCTGCTTCTTCGACAGGAGG+CGG 0.519972 3:+78488257 None:intergenic
AATGGTATATAATGGGTTTG+TGG 0.520679 3:-78489277 MsG0380016056.01.T01:CDS
AGGTGGGTAGCGAGGGCCGT+AGG 0.522579 3:+78487401 None:intergenic
AGCTCTGCTTCTTCGACAGG+AGG 0.523272 3:+78488254 None:intergenic
GTTGAGGAGAAGGAGGAGGA+GGG 0.526301 3:-78489565 MsG0380016056.01.T01:CDS
TGAGAGTAAAGTAAAATCAA+TGG 0.530434 3:+78487646 None:intergenic
TGTTACTTCCCACTGGAAGA+AGG 0.536692 3:-78489235 MsG0380016056.01.T01:intron
ATGGCAGAGGTGGGTAGCGA+GGG 0.537449 3:+78487394 None:intergenic
TGTGTATTCATATTCATTGG+AGG 0.537524 3:+78487321 None:intergenic
CTGCTTTATACATTCTCCTA+CGG 0.539301 3:-78487417 MsG0380016056.01.T01:CDS
ATCAAGTGCTTGTTTCTGAA+TGG 0.542025 3:-78489295 MsG0380016056.01.T01:CDS
AGCATGCTGTTACTTCCCAC+TGG 0.542911 3:-78489242 MsG0380016056.01.T01:CDS
ATGATATGACTGCTAGAAAG+TGG 0.544671 3:-78487598 MsG0380016056.01.T01:intron
TAAAATCAATGGACGTAACA+TGG 0.549184 3:+78487657 None:intergenic
TATTCATTGGAGGCATCGGA+TGG 0.550584 3:+78487331 None:intergenic
GGAATCAAAAGTCGCTGCAA+TGG 0.551432 3:-78488207 MsG0380016056.01.T01:intron
GATGGCAGAGGTGGGTAGCG+AGG 0.555589 3:+78487393 None:intergenic
CGTAGGAGAATGTATAAAGC+AGG 0.556966 3:+78487418 None:intergenic
TAAGAGAAAGAGTAAAATTG+AGG 0.559915 3:+78489525 None:intergenic
ACAATAACAGTAGTGGCCTC+GGG 0.564855 3:-78489724 MsG0380016056.01.T01:CDS
ACCTACCGGTGTTTGGTTAG+GGG 0.573386 3:+78489468 None:intergenic
GTTTGTGTGATGGCAGAGGT+GGG 0.580104 3:+78487385 None:intergenic
TGATGGAGTAGCAGCAACAG+AGG 0.585746 3:+78489648 None:intergenic
CAAACAGAGTAGCAGTGTTG+AGG 0.594516 3:-78489581 MsG0380016056.01.T01:CDS
TCAACTTCAAACCGCACAAG+GGG 0.599951 3:+78489844 None:intergenic
CCAATATGCAGGTTTGACAA+AGG 0.601109 3:-78487481 MsG0380016056.01.T01:intron
GGGAAATACCTTCTTCCAGT+GGG 0.602141 3:+78489227 None:intergenic
AAGAAGCAGAGCTCAAAACA+TGG 0.606449 3:-78488244 MsG0380016056.01.T01:CDS
TATAAAGCAGGCCCCAGCAA+CGG 0.608318 3:+78487430 None:intergenic
AAATAAGAGTAAGACATCAT+CGG 0.608958 3:-78489883 MsG0380016056.01.T01:five_prime_UTR
TGGGAAATACCTTCTTCCAG+TGG 0.612952 3:+78489226 None:intergenic
GAAAGCAACAATAACAGTAG+TGG 0.613050 3:-78489731 MsG0380016056.01.T01:CDS
AGTTTGTGTGATGGCAGAGG+TGG 0.613291 3:+78487384 None:intergenic
GTATAGCCGGGGAAGATGTG+TGG 0.621513 3:-78487938 MsG0380016056.01.T01:CDS
AACTTCAAACCGCACAAGGG+GGG 0.624545 3:+78489846 None:intergenic
TTCAACTTCAAACCGCACAA+GGG 0.631583 3:+78489843 None:intergenic
ATCAGATATTGCTTGCTTCG+GGG 0.633077 3:-78487983 MsG0380016056.01.T01:intron
AGGAGTTTGTGTGATGGCAG+AGG 0.634147 3:+78487381 None:intergenic
AGGCATCGGATGGATTCACT+CGG 0.636057 3:+78487341 None:intergenic
TATCATTGATACCGTTGCTG+GGG 0.639191 3:-78487441 MsG0380016056.01.T01:CDS
GATGGAGTAGCAGCAACAGA+GGG 0.640325 3:+78489649 None:intergenic
AAATCTGATGACTTATGCTG+TGG 0.644402 3:+78487229 None:intergenic
TCTCTCCCCTAACCAAACAC+CGG 0.652993 3:-78489473 MsG0380016056.01.T01:intron
AACAGCATGCTATACACCAA+AGG 0.654498 3:+78489254 None:intergenic
ATAGGCATCATAGTTTACGC+TGG 0.674310 3:-78487960 MsG0380016056.01.T01:CDS
TAATCTGCAACAACATCCCG+AGG 0.679788 3:+78489708 None:intergenic
CAACTTCAAACCGCACAAGG+GGG 0.684206 3:+78489845 None:intergenic
AGTTTACGCTGGTATAGCCG+GGG 0.687390 3:-78487949 MsG0380016056.01.T01:CDS
CTCAACAGGAGTTTGTGTGA+TGG 0.712297 3:+78487375 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGCTTAAAATAATAAATACA+AGG + Chr3:78489137-78489156 None:intergenic 15.0%
!! TTGTACCAAAAAAAAAAAAA+AGG + Chr3:78489872-78489891 None:intergenic 15.0%
!! TTTGATTCCAAAAAATTTAA+TGG + Chr3:78488753-78488772 None:intergenic 15.0%
!!! ATCTTTTATATAGTATGATA+GGG + Chr3:78489457-78489476 None:intergenic 15.0%
!!! TATCTTTTATATAGTATGAT+AGG + Chr3:78489458-78489477 None:intergenic 15.0%
!! AAATGTGTATTCATATTCAT+TGG + Chr3:78489656-78489675 None:intergenic 20.0%
!! AATCATCAAAAATTTAAGCA+CGG - Chr3:78488316-78488335 MsG0380016056.01.T01:CDS 20.0%
!! AATTATAATATTATCCTGAG+TGG + Chr3:78488408-78488427 None:intergenic 20.0%
!! AGTAAATTGAGTGAATAATT+CGG + Chr3:78487994-78488013 None:intergenic 20.0%
!!! AATTTTACTCTTTCTCTTAT+GGG - Chr3:78487450-78487469 MsG0380016056.01.T01:CDS 20.0%
!!! CTATTTATAATAAGCCTTTT+AGG + Chr3:78488123-78488142 None:intergenic 20.0%
!!! GTCTACCTTTTTTTTTTTTT+TGG - Chr3:78489864-78489883 MsG0380016056.01.T01:five_prime_UTR 20.0%
!!! TTTTCATAAGTTATCCTAAA+AGG - Chr3:78488106-78488125 MsG0380016056.01.T01:intron 20.0%
! AAAAAGCTCTTGAATTTGAA+AGG - Chr3:78487633-78487652 MsG0380016056.01.T01:CDS 25.0%
! AAATAAGAGTAAGACATCAT+CGG - Chr3:78487088-78487107 MsG0380016056.01.T01:three_prime_UTR 25.0%
! AACAATATTGACATCCATTT+AGG - Chr3:78489777-78489796 MsG0380016056.01.T01:CDS 25.0%
! AATGGATGTCAATATTGTTA+TGG + Chr3:78489776-78489795 None:intergenic 25.0%
! AGTATATAGATATTACCTAC+CGG + Chr3:78487520-78487539 None:intergenic 25.0%
! ATATCATTGTAAACCCAAAA+TGG + Chr3:78489360-78489379 None:intergenic 25.0%
! ATATTATAGCTAGCTAAGTT+TGG + Chr3:78488246-78488265 None:intergenic 25.0%
! ATGACGAGTTAAAAATATTC+AGG + Chr3:78488938-78488957 None:intergenic 25.0%
! ATGCATATGCATATGAAAAT+GGG + Chr3:78487767-78487786 None:intergenic 25.0%
! GATTTAAATAATAGTGTCCA+TGG - Chr3:78488840-78488859 MsG0380016056.01.T01:intron 25.0%
! GTAAATTGAGTGAATAATTC+GGG + Chr3:78487993-78488012 None:intergenic 25.0%
! GTTTCTGAATGGTATATAAT+GGG - Chr3:78487687-78487706 MsG0380016056.01.T01:intron 25.0%
! TAAATTGAGTGAATAATTCG+GGG + Chr3:78487992-78488011 None:intergenic 25.0%
! TAAGAGAAAGAGTAAAATTG+AGG + Chr3:78487449-78487468 None:intergenic 25.0%
! TGAAAGAAGTTTGATGAATA+TGG - Chr3:78487147-78487166 MsG0380016056.01.T01:three_prime_UTR 25.0%
! TGAGAGTAAAGTAAAATCAA+TGG + Chr3:78489328-78489347 None:intergenic 25.0%
! TTTAATAATTCTGTAGTCGA+GGG - Chr3:78487596-78487615 MsG0380016056.01.T01:intron 25.0%
!! CAATTTTACTCTTTCTCTTA+TGG - Chr3:78487449-78487468 MsG0380016056.01.T01:CDS 25.0%
!! TAACAATATTAGAGAGGTAT+AGG + Chr3:78489170-78489189 None:intergenic 25.0%
!! TCTTCAATCTTATTTACTAG+CGG + Chr3:78487943-78487962 None:intergenic 25.0%
!! TGTTTCTGAATGGTATATAA+TGG - Chr3:78487686-78487705 MsG0380016056.01.T01:intron 25.0%
!! TTTTACTTTACTCTCAACAT+TGG - Chr3:78489332-78489351 MsG0380016056.01.T01:CDS 25.0%
!!! AACATGGCCATTAAATTTTT+TGG - Chr3:78488743-78488762 MsG0380016056.01.T01:intron 25.0%
!!! ATTTTAGCATGTTGCAAATT+TGG + Chr3:78489273-78489292 None:intergenic 25.0%
!!! ATTTTTTGTATTTCAGAGTG+GGG + Chr3:78487213-78487232 None:intergenic 25.0%
!!! GATTTTTTGTATTTCAGAGT+GGG + Chr3:78487214-78487233 None:intergenic 25.0%
!!! TGATTTTTTGTATTTCAGAG+TGG + Chr3:78487215-78487234 None:intergenic 25.0%
!!! TTATTAATTCTGAAATGCCA+GGG + Chr3:78488473-78488492 None:intergenic 25.0%
AAATTGAGTGAATAATTCGG+GGG + Chr3:78487991-78488010 None:intergenic 30.0%
AAGTTACAAGTTACGAGATT+GGG + Chr3:78487190-78487209 None:intergenic 30.0%
AATAAATACAAGGACAAGTC+AGG + Chr3:78489127-78489146 None:intergenic 30.0%
AGACTTTGAACTTCTCTTTA+AGG + Chr3:78489848-78489867 None:intergenic 30.0%
AGCTTAGAATTTAGCGTAAT+AGG + Chr3:78487810-78487829 None:intergenic 30.0%
ATGAACAAAATCACTAACCA+TGG + Chr3:78488860-78488879 None:intergenic 30.0%
ATTTGCAACATGCTAAAATC+TGG - Chr3:78489274-78489293 MsG0380016056.01.T01:CDS 30.0%
CATGCATATGCATATGAAAA+TGG + Chr3:78487768-78487787 None:intergenic 30.0%
CTACAGAATGTAAAACTAAG+AGG + Chr3:78488436-78488455 None:intergenic 30.0%
CTTTAATAATTCTGTAGTCG+AGG - Chr3:78487595-78487614 MsG0380016056.01.T01:intron 30.0%
TAAAATCAATGGACGTAACA+TGG + Chr3:78489317-78489336 None:intergenic 30.0%
TACAACATGAGGATATTCTT+GGG + Chr3:78488890-78488909 None:intergenic 30.0%
TGCAACAGCTTTACAATATT+AGG + Chr3:78488807-78488826 None:intergenic 30.0%
TGTGTATTCATATTCATTGG+AGG + Chr3:78489653-78489672 None:intergenic 30.0%
TTGAAATCGATTGTTGAGTT+TGG - Chr3:78489691-78489710 MsG0380016056.01.T01:CDS 30.0%
TTGAATTTGAAAGGAGATGA+TGG - Chr3:78487642-78487661 MsG0380016056.01.T01:CDS 30.0%
! AACTCAGCTTTTCATATTGT+CGG - Chr3:78489101-78489120 MsG0380016056.01.T01:intron 30.0%
! AATTTTCACTTAGAGATCCT+AGG - Chr3:78489425-78489444 MsG0380016056.01.T01:intron 30.0%
! ATGCATATGCATGCATTTTT+AGG - Chr3:78487775-78487794 MsG0380016056.01.T01:intron 30.0%
! GCTTTCATTTTCATTACTAG+AGG + Chr3:78487301-78487320 None:intergenic 30.0%
! TAACATTCGACCATTGTTTT+AGG - Chr3:78488364-78488383 MsG0380016056.01.T01:intron 30.0%
! TACAAAGACGTCTACATTTT+CGG - Chr3:78489887-78489906 MsG0380016056.01.T01:five_prime_UTR 30.0%
!! AACATTCGACCATTGTTTTA+GGG - Chr3:78488365-78488384 MsG0380016056.01.T01:intron 30.0%
!! AATGGTATATAATGGGTTTG+TGG - Chr3:78487694-78487713 MsG0380016056.01.T01:intron 30.0%
!! AGTTATTTCTGTAGTGAAAG+AGG - Chr3:78488067-78488086 MsG0380016056.01.T01:intron 30.0%
!! GTTATTAATTCTGAAATGCC+AGG + Chr3:78488474-78488493 None:intergenic 30.0%
!!! TAGAGTTTTAACTTATACCC+TGG - Chr3:78488453-78488472 MsG0380016056.01.T01:intron 30.0%
!!! TGACGATTTAGTTTTTGCAT+TGG - Chr3:78488575-78488594 MsG0380016056.01.T01:intron 30.0%
AAAAATGAAGCAGACAGGAA+GGG + Chr3:78488645-78488664 None:intergenic 35.0%
AAATCTGATGACTTATGCTG+TGG + Chr3:78489745-78489764 None:intergenic 35.0%
AAGAATGTCACTACAACATG+AGG + Chr3:78488901-78488920 None:intergenic 35.0%
AATCAGATATTGCTTGCTTC+GGG - Chr3:78488987-78489006 MsG0380016056.01.T01:intron 35.0%
AATCGATTGTTGAGTTTGGT+TGG - Chr3:78489695-78489714 MsG0380016056.01.T01:CDS 35.0%
AATGGTCGAATGTTACATCT+TGG + Chr3:78488359-78488378 None:intergenic 35.0%
ACGACCTAGTAAGTTACATT+AGG - Chr3:78489247-78489266 MsG0380016056.01.T01:CDS 35.0%
AGCAACATTGTTTACATAGC+AGG + Chr3:78488542-78488561 None:intergenic 35.0%
ATCGATTGTTGAGTTTGGTT+GGG - Chr3:78489696-78489715 MsG0380016056.01.T01:CDS 35.0%
ATGATATGACTGCTAGAAAG+TGG - Chr3:78489373-78489392 MsG0380016056.01.T01:intron 35.0%
CAACAACTCTGTTACAAAGA+TGG + Chr3:78488027-78488046 None:intergenic 35.0%
CCAGCTTAACAATATTAGAG+AGG + Chr3:78489176-78489195 None:intergenic 35.0%
CCTCTCTAATATTGTTAAGC+TGG - Chr3:78489173-78489192 MsG0380016056.01.T01:intron 35.0%
CTACAACATGAGGATATTCT+TGG + Chr3:78488891-78488910 None:intergenic 35.0%
CTGCTTTATACATTCTCCTA+CGG - Chr3:78489554-78489573 MsG0380016056.01.T01:CDS 35.0%
GAAAGCAACAATAACAGTAG+TGG - Chr3:78487240-78487259 MsG0380016056.01.T01:three_prime_UTR 35.0%
GAAGTTACAAGTTACGAGAT+TGG + Chr3:78487191-78487210 None:intergenic 35.0%
GAATCAGATATTGCTTGCTT+CGG - Chr3:78488986-78489005 MsG0380016056.01.T01:intron 35.0%
GCAACATTGTTTACATAGCA+GGG + Chr3:78488541-78488560 None:intergenic 35.0%
TAATGTAACTTACTAGGTCG+TGG + Chr3:78489248-78489267 None:intergenic 35.0%
TATATAGTATGATAGGGACC+AGG + Chr3:78489451-78489470 None:intergenic 35.0%
TCTGCAAAGATATGCCTAAA+TGG + Chr3:78489794-78489813 None:intergenic 35.0%
TTGAACTGACCCTAAAACAA+TGG + Chr3:78488377-78488396 None:intergenic 35.0%
TTGGCCTAATGTAACTTACT+AGG + Chr3:78489254-78489273 None:intergenic 35.0%
! AAGAATTTTTCCAGTACTGC+AGG - Chr3:78489057-78489076 MsG0380016056.01.T01:intron 35.0%
! AGAATTTTTCCAGTACTGCA+GGG - Chr3:78489058-78489077 MsG0380016056.01.T01:intron 35.0%
! GCTAAGTTTGGATTTGCTTA+TGG + Chr3:78488234-78488253 None:intergenic 35.0%
! TTCATATTCATTGGAGGCAT+CGG + Chr3:78489647-78489666 None:intergenic 35.0%
!! ATCAAGTGCTTGTTTCTGAA+TGG - Chr3:78487676-78487695 MsG0380016056.01.T01:intron 35.0%
!! TTCCTGTCTGCTTCATTTTT+CGG - Chr3:78488645-78488664 MsG0380016056.01.T01:intron 35.0%
!!! TTCTTCCTTATTTTGTGCTC+TGG - Chr3:78488682-78488701 MsG0380016056.01.T01:intron 35.0%
AAAGCTTCAAGCCACAAAAG+AGG + Chr3:78487836-78487855 None:intergenic 40.0%
AACAATAACAGTAGTGGCCT+CGG - Chr3:78487246-78487265 MsG0380016056.01.T01:three_prime_UTR 40.0%
AACACTGCTACTCTGTTTGT+TGG + Chr3:78487389-78487408 None:intergenic 40.0%
AACAGCATGCTATACACCAA+AGG + Chr3:78487720-78487739 None:intergenic 40.0%
AAGAAGCAGAGCTCAAAACA+TGG - Chr3:78488727-78488746 MsG0380016056.01.T01:intron 40.0%
ACCAATGTGATCGAAACGAA+GGG + Chr3:78488295-78488314 None:intergenic 40.0%
AGATATTACCTACCGGTGTT+TGG + Chr3:78487513-78487532 None:intergenic 40.0%
AGCAACGGTATCAATGATAC+TGG + Chr3:78489529-78489548 None:intergenic 40.0%
AGTATCATTGATACCGTTGC+TGG - Chr3:78489528-78489547 MsG0380016056.01.T01:CDS 40.0%
ATAGGCATCATAGTTTACGC+TGG - Chr3:78489011-78489030 MsG0380016056.01.T01:intron 40.0%
ATAGTTTACGCTGGTATAGC+CGG - Chr3:78489020-78489039 MsG0380016056.01.T01:intron 40.0%
ATCAGATATTGCTTGCTTCG+GGG - Chr3:78488988-78489007 MsG0380016056.01.T01:intron 40.0%
ATTCCCACAAAGCTCAAAGT+AGG + Chr3:78488502-78488521 None:intergenic 40.0%
CATTGTTTACATAGCAGGGT+CGG + Chr3:78488537-78488556 None:intergenic 40.0%
CCAATATGCAGGTTTGACAA+AGG - Chr3:78489490-78489509 MsG0380016056.01.T01:CDS 40.0%
CCTTTGTCAAACCTGCATAT+TGG + Chr3:78489493-78489512 None:intergenic 40.0%
CGTAGGAGAATGTATAAAGC+AGG + Chr3:78489556-78489575 None:intergenic 40.0%
CTACTCTTTCTCCGAAATGA+TGG + Chr3:78487343-78487362 None:intergenic 40.0%
CTATTCCACAGCTCAAAAAG+CGG - Chr3:78488606-78488625 MsG0380016056.01.T01:intron 40.0%
GAAAAATGAAGCAGACAGGA+AGG + Chr3:78488646-78488665 None:intergenic 40.0%
GGTTTCCAGAGCACAAAATA+AGG + Chr3:78488690-78488709 None:intergenic 40.0%
GTAATGCTAGTCCAATATGC+AGG - Chr3:78489479-78489498 MsG0380016056.01.T01:CDS 40.0%
GTATCATTGATACCGTTGCT+GGG - Chr3:78489529-78489548 MsG0380016056.01.T01:CDS 40.0%
GTTACAGCTCTTAACTGACA+TGG - Chr3:78487886-78487905 MsG0380016056.01.T01:intron 40.0%
GTTCAATAGAGTTTCCACTC+AGG - Chr3:78488391-78488410 MsG0380016056.01.T01:intron 40.0%
TACCAATGTGATCGAAACGA+AGG + Chr3:78488296-78488315 None:intergenic 40.0%
TATCATTGATACCGTTGCTG+GGG - Chr3:78489530-78489549 MsG0380016056.01.T01:CDS 40.0%
TTCAACTTCAAACCGCACAA+GGG + Chr3:78487131-78487150 None:intergenic 40.0%
TTGCTGCTACTCCATCATTT+CGG - Chr3:78487329-78487348 MsG0380016056.01.T01:three_prime_UTR 40.0%
TTTCAACTTCAAACCGCACA+AGG + Chr3:78487132-78487151 None:intergenic 40.0%
! ACTTTGAGCTTTGTGGGAAT+CGG - Chr3:78488502-78488521 MsG0380016056.01.T01:intron 40.0%
! CTCAACATTGGCACCATTTT+GGG - Chr3:78489344-78489363 MsG0380016056.01.T01:CDS 40.0%
! TCTAAGCTTCTCCTCTTTTG+TGG - Chr3:78487822-78487841 MsG0380016056.01.T01:intron 40.0%
! TCTCAACATTGGCACCATTT+TGG - Chr3:78489343-78489362 MsG0380016056.01.T01:CDS 40.0%
! TTGCCTACTTTGAGCTTTGT+GGG - Chr3:78488496-78488515 MsG0380016056.01.T01:intron 40.0%
!! TATAATGGGTTTGTGGCCTT+TGG - Chr3:78487701-78487720 MsG0380016056.01.T01:intron 40.0%
AATGTGATCGAAACGAAGGG+TGG + Chr3:78488292-78488311 None:intergenic 45.0%
ACAATAACAGTAGTGGCCTC+GGG - Chr3:78487247-78487266 MsG0380016056.01.T01:three_prime_UTR 45.0%
ACCCTTCGTTTCGATCACAT+TGG - Chr3:78488291-78488310 MsG0380016056.01.T01:CDS 45.0%
AGGAGGAGGGTAAAAGAGAT+TGG - Chr3:78487419-78487438 MsG0380016056.01.T01:CDS 45.0%
ATATTGCTTGCTTCGGGGAT+AGG - Chr3:78488993-78489012 MsG0380016056.01.T01:intron 45.0%
ATTTGCTTTCCCTGCAGTAC+TGG + Chr3:78489070-78489089 None:intergenic 45.0%
CAAAAAGCGGTGTTCCTGTA+TGG - Chr3:78488619-78488638 MsG0380016056.01.T01:intron 45.0%
CAAACAGAGTAGCAGTGTTG+AGG - Chr3:78487390-78487409 MsG0380016056.01.T01:CDS 45.0%
CACCGAAAAATGAAGCAGAC+AGG + Chr3:78488650-78488669 None:intergenic 45.0%
CTCAACAGGAGTTTGTGTGA+TGG + Chr3:78489599-78489618 None:intergenic 45.0%
CTTGCCTACTTTGAGCTTTG+TGG - Chr3:78488495-78488514 MsG0380016056.01.T01:intron 45.0%
GCAGGTTTGACAAAGGTTCT+TGG - Chr3:78489497-78489516 MsG0380016056.01.T01:CDS 45.0%
GGAATCAAAAGTCGCTGCAA+TGG - Chr3:78488764-78488783 MsG0380016056.01.T01:intron 45.0%
GGGAAATACCTTCTTCCAGT+GGG + Chr3:78487747-78487766 None:intergenic 45.0%
TAATCTGCAACAACATCCCG+AGG + Chr3:78487266-78487285 None:intergenic 45.0%
TAATTTACACCCCCCTTGTG+CGG - Chr3:78487116-78487135 MsG0380016056.01.T01:three_prime_UTR 45.0%
TACCTACCGGTGTTTGGTTA+GGG + Chr3:78487507-78487526 None:intergenic 45.0%
TAGTTTACGCTGGTATAGCC+GGG - Chr3:78489021-78489040 MsG0380016056.01.T01:intron 45.0%
TCAACTTCAAACCGCACAAG+GGG + Chr3:78487130-78487149 None:intergenic 45.0%
TGGGAAATACCTTCTTCCAG+TGG + Chr3:78487748-78487767 None:intergenic 45.0%
TTACCTACCGGTGTTTGGTT+AGG + Chr3:78487508-78487527 None:intergenic 45.0%
TTCTTTCCACACATCTTCCC+CGG + Chr3:78489042-78489061 None:intergenic 45.0%
! TGTTACTTCCCACTGGAAGA+AGG - Chr3:78487736-78487755 MsG0380016056.01.T01:intron 45.0%
!! CTGTCTGCTTCATTTTTCGG+TGG - Chr3:78488648-78488667 MsG0380016056.01.T01:intron 45.0%
!! TATTCATTGGAGGCATCGGA+TGG + Chr3:78489643-78489662 None:intergenic 45.0%
AACTTCAAACCGCACAAGGG+GGG + Chr3:78487128-78487147 None:intergenic 50.0%
ACCTACCGGTGTTTGGTTAG+GGG + Chr3:78487506-78487525 None:intergenic 50.0%
AGGAGTTTGTGTGATGGCAG+AGG + Chr3:78489593-78489612 None:intergenic 50.0%
AGTTTACGCTGGTATAGCCG+GGG - Chr3:78489022-78489041 MsG0380016056.01.T01:intron 50.0%
AGTTTGTGTGATGGCAGAGG+TGG + Chr3:78489590-78489609 None:intergenic 50.0%
CAACTTCAAACCGCACAAGG+GGG + Chr3:78487129-78487148 None:intergenic 50.0%
CGGATTCACTCTGACTCAAC+AGG + Chr3:78489613-78489632 None:intergenic 50.0%
GATGGAGTAGCAGCAACAGA+GGG + Chr3:78487325-78487344 None:intergenic 50.0%
GTTTGTGTGATGGCAGAGGT+GGG + Chr3:78489589-78489608 None:intergenic 50.0%
TATAAAGCAGGCCCCAGCAA+CGG + Chr3:78489544-78489563 None:intergenic 50.0%
TCACTTAGAGATCCTAGGCC+TGG - Chr3:78489430-78489449 MsG0380016056.01.T01:intron 50.0%
TCTCTCCCCTAACCAAACAC+CGG - Chr3:78487498-78487517 MsG0380016056.01.T01:intron 50.0%
TGATGGAGTAGCAGCAACAG+AGG + Chr3:78487326-78487345 None:intergenic 50.0%
TTGAGCTCTGCTTCTTCGAC+AGG + Chr3:78488723-78488742 None:intergenic 50.0%
! AGCATGCTGTTACTTCCCAC+TGG - Chr3:78487729-78487748 MsG0380016056.01.T01:intron 50.0%
! GAGTAGCAGTGTTGAGGAGA+AGG - Chr3:78487396-78487415 MsG0380016056.01.T01:CDS 50.0%
! TAGCAGTGTTGAGGAGAAGG+AGG - Chr3:78487399-78487418 MsG0380016056.01.T01:CDS 50.0%
!! AGGCATCGGATGGATTCACT+CGG + Chr3:78489633-78489652 None:intergenic 50.0%
!!! GAACACCGCTTTTTGAGCTG+TGG + Chr3:78488614-78488633 None:intergenic 50.0%
ACGAAGGGTGGCATCATGCA+TGG + Chr3:78488280-78488299 None:intergenic 55.0%
AGCTCTGCTTCTTCGACAGG+AGG + Chr3:78488720-78488739 None:intergenic 55.0%
GTATAGCCGGGGAAGATGTG+TGG - Chr3:78489033-78489052 MsG0380016056.01.T01:intron 55.0%
GTATGATAGGGACCAGGCCT+AGG + Chr3:78489445-78489464 None:intergenic 55.0%
GTTGAGGAGAAGGAGGAGGA+GGG - Chr3:78487406-78487425 MsG0380016056.01.T01:CDS 55.0%
TCCCCTAACCAAACACCGGT+AGG - Chr3:78487502-78487521 MsG0380016056.01.T01:intron 55.0%
TCTGCTTCTTCGACAGGAGG+CGG + Chr3:78488717-78488736 None:intergenic 55.0%
TGTTGAGGAGAAGGAGGAGG+AGG - Chr3:78487405-78487424 MsG0380016056.01.T01:CDS 55.0%
! CAGTGTTGAGGAGAAGGAGG+AGG - Chr3:78487402-78487421 MsG0380016056.01.T01:CDS 55.0%
ATGGCAGAGGTGGGTAGCGA+GGG + Chr3:78489580-78489599 None:intergenic 60.0%
GCAGACAGGAAGGGCCATAC+AGG + Chr3:78488636-78488655 None:intergenic 60.0%
GATGGCAGAGGTGGGTAGCG+AGG + Chr3:78489581-78489600 None:intergenic 65.0%
GCTTCTTCGACAGGAGGCGG+TGG + Chr3:78488714-78488733 None:intergenic 65.0%
TCTTCGACAGGAGGCGGTGG+AGG + Chr3:78488711-78488730 None:intergenic 65.0%
AGGTGGGTAGCGAGGGCCGT+AGG + Chr3:78489573-78489592 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 78487086 78489907 78487086 ID=MsG0380016056.01;Name=MsG0380016056.01
Chr3 mRNA 78487086 78489907 78487086 ID=MsG0380016056.01.T01;Parent=MsG0380016056.01;Name=MsG0380016056.01.T01;_AED=0.28;_eAED=0.28;_QI=74|1|1|1|1|1|6|280|327
Chr3 exon 78487086 78487492 78487086 ID=MsG0380016056.01.T01:exon:17420;Parent=MsG0380016056.01.T01
Chr3 exon 78487599 78487681 78487599 ID=MsG0380016056.01.T01:exon:17419;Parent=MsG0380016056.01.T01
Chr3 exon 78487902 78488000 78487902 ID=MsG0380016056.01.T01:exon:17418;Parent=MsG0380016056.01.T01
Chr3 exon 78488208 78488376 78488208 ID=MsG0380016056.01.T01:exon:17417;Parent=MsG0380016056.01.T01
Chr3 exon 78489236 78489381 78489236 ID=MsG0380016056.01.T01:exon:17416;Parent=MsG0380016056.01.T01
Chr3 exon 78489474 78489907 78489474 ID=MsG0380016056.01.T01:exon:17415;Parent=MsG0380016056.01.T01
Chr3 five_prime_UTR 78489834 78489907 78489834 ID=MsG0380016056.01.T01:five_prime_utr;Parent=MsG0380016056.01.T01
Chr3 CDS 78489474 78489833 78489474 ID=MsG0380016056.01.T01:cds;Parent=MsG0380016056.01.T01
Chr3 CDS 78489236 78489381 78489236 ID=MsG0380016056.01.T01:cds;Parent=MsG0380016056.01.T01
Chr3 CDS 78488208 78488376 78488208 ID=MsG0380016056.01.T01:cds;Parent=MsG0380016056.01.T01
Chr3 CDS 78487902 78488000 78487902 ID=MsG0380016056.01.T01:cds;Parent=MsG0380016056.01.T01
Chr3 CDS 78487599 78487681 78487599 ID=MsG0380016056.01.T01:cds;Parent=MsG0380016056.01.T01
Chr3 CDS 78487366 78487492 78487366 ID=MsG0380016056.01.T01:cds;Parent=MsG0380016056.01.T01
Chr3 three_prime_UTR 78487086 78487365 78487086 ID=MsG0380016056.01.T01:three_prime_utr;Parent=MsG0380016056.01.T01
Gene Sequence

>MsG0380016056.01.T01

ATGAATATGGTGCTCGTTGTAGCTAAACCCAATCTCGTAACTTGTAACTTCCCCACTCTGAAATACAAAAAATCAATTCAGAAAGCAACAATAACAGTAGTGGCCTCGGGATGTTGTTGCAGATTAAGCTCATTCACACCTCTAGTAATGAAAATGAAAGCTCCCTCTGTTGCTGCTACTCCATCATTTCGGAGAAAGAGTAGTAGCATCGTTATTTGCAATGATTCCAACAAACAGAGTAGCAGTGTTGAGGAGAAGGAGGAGGAGGGTAAAAGAGATTGGACAACCTCAATTTTACTCTTTCTCTTATGGGCTGCACTTATCTACTATGTTTCTTTTCTCTCCCCTAACCAAACACCGTCGAGGGACATGTATTTCTTGAAAAAGCTCTTGAATTTGAAAGGAGATGATGGTTTCAGAATGAATCAAGTGCTTGTTTCTGAATGGTATATAATGGGTTTGTGGCCTTTGGTGTATAGCATGCTGTTACTTCCCACTGGAAGAAGCTCAAAAAGCGGTGTTCCTGTATGGCCCTTCCTGTCTGCTTCATTTTTCGGTGGCATATATGCACTTCTTCCTTATTTTGTGCTCTGGAAACCTCCACCGCCTCCTGTCGAAGAAGCAGAGCTCAAAACATGGCCATTAAATTTTTTGGAATCAAAAGTCGCTGCAATGATATTGCTTGCTTCGGGGATAGGCATCATAGTTTACGCTGGTATAGCCGGGGAAGATGTGTGGAAAGAATTTTTCCAGTACTGCAGGGAAAGCAAATTTATCCATGTTACGTCCATTGATTTTACTTTACTCTCAACATTGGCACCATTTTGGGTTTACAATGATATGACTGCTAGAAAGTGGTTTGACAAAGGTTCTTGGCTTCTTCCAGTATCATTGATACCGTTGCTGGGGCCTGCTTTATACATTCTCCTACGGCCCTCGCTACCCACCTCTGCCATCACACAAACTCCTGTTGAGTCAGAGTGA

Protein sequence

>MsG0380016056.01.T01

MNMVLVVAKPNLVTCNFPTLKYKKSIQKATITVVASGCCCRLSSFTPLVMKMKAPSVAATPSFRRKSSSIVICNDSNKQSSSVEEKEEEGKRDWTTSILLFLLWAALIYYVSFLSPNQTPSRDMYFLKKLLNLKGDDGFRMNQVLVSEWYIMGLWPLVYSMLLLPTGRSSKSGVPVWPFLSASFFGGIYALLPYFVLWKPPPPPVEEAELKTWPLNFLESKVAAMILLASGIGIIVYAGIAGEDVWKEFFQYCRESKFIHVTSIDFTLLSTLAPFWVYNDMTARKWFDKGSWLLPVSLIPLLGPALYILLRPSLPTSAITQTPVESE*