AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010245.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010245.01.T01 MTR_2g079700 50.000 336 96 9 47 317 27 355 8.74e-86 264
MsG0280010245.01.T01 MTR_6g007490 76.923 117 21 2 206 316 262 378 4.72e-55 185
MsG0280010245.01.T01 MTR_3g086910 55.833 120 46 2 206 318 235 354 1.24e-35 133
MsG0280010245.01.T01 MTR_6g007490 77.941 68 14 1 206 272 262 329 7.37e-30 116
MsG0280010245.01.T01 MTR_3g086910 58.824 68 27 1 206 272 235 302 4.39e-18 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010245.01.T01 AT1G52920 45.104 337 119 11 42 317 17 348 5.90e-68 218
MsG0280010245.01.T01 AT2G20770 73.276 116 25 2 206 315 226 341 2.58e-49 169
MsG0280010245.01.T01 AT5G65280 55.833 120 46 2 206 318 132 251 1.04e-37 137
MsG0280010245.01.T01 AT5G65280 55.833 120 46 2 206 318 254 373 9.35e-37 137

Find 87 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCGATGACATCCAAATTTA+TGG 0.139431 2:+66631461 MsG0280010245.01.T01:CDS
ATTCATCATAACCATAAATT+TGG 0.160251 2:-66631472 None:intergenic
TTAATAAAATTCGTCGCTTA+TGG 0.209326 2:+66630182 MsG0280010245.01.T01:CDS
GGAGCTTTGGGGAGGGTTGG+AGG 0.279154 2:+66630043 MsG0280010245.01.T01:CDS
TGCGTTCGTGGCGGAGCTTT+GGG 0.289146 2:+66630031 MsG0280010245.01.T01:CDS
ATTTGAACACCTGGAAATTA+TGG 0.299240 2:+66631439 MsG0280010245.01.T01:CDS
GTGCGTTCGTGGCGGAGCTT+TGG 0.343884 2:+66630030 MsG0280010245.01.T01:CDS
CGTGCCGGTGTTTGTGCTCT+TGG 0.351585 2:+66631952 MsG0280010245.01.T01:CDS
TTGACATCTTCCACCTCATC+TGG 0.364253 2:-66632544 None:intergenic
CATTGGTGTCACGGTGCTCC+TGG 0.378975 2:+66632652 MsG0280010245.01.T01:CDS
TACTCTCTATTTCATGCATC+TGG 0.393352 2:+66631190 MsG0280010245.01.T01:CDS
CAGGAGAAGTAGTGTGGAAG+AGG 0.407282 2:+66632985 MsG0280010245.01.T01:CDS
GGCGGAGCTTTGGGGAGGGT+TGG 0.415466 2:+66630040 MsG0280010245.01.T01:CDS
GTCAGATTCACTTCCTTCAC+TGG 0.425272 2:-66632620 None:intergenic
GACTTAACTTAGCCGTTGTA+AGG 0.426528 2:+66631216 MsG0280010245.01.T01:CDS
TGGTGGTTTGCTAAATTCAT+TGG 0.428379 2:+66629999 MsG0280010245.01.T01:CDS
CTTTCTCTGTACAGATTGAC+AGG 0.431846 2:+66633065 MsG0280010245.01.T01:CDS
TAGTGTGGAGAAGACTATAA+AGG 0.459575 2:+66630124 MsG0280010245.01.T01:CDS
ATTCTGCTTCAGCAAATTCA+AGG 0.460631 2:+66631167 MsG0280010245.01.T01:intron
TGTCATCGACCATAATTTCC+AGG 0.461023 2:-66631448 None:intergenic
TTGAGATATGTGAGAAGGAT+GGG 0.471948 2:+66630068 MsG0280010245.01.T01:CDS
CGTCGCTTATGGAGATGGAT+TGG 0.474062 2:+66630193 MsG0280010245.01.T01:CDS
AGGAAACAAGGTACTTGTAC+AGG 0.474451 2:+66633085 MsG0280010245.01.T01:CDS
AAATTCGTCGCTTATGGAGA+TGG 0.479630 2:+66630188 MsG0280010245.01.T01:CDS
GAGCTTTGGGGAGGGTTGGA+GGG 0.482842 2:+66630044 MsG0280010245.01.T01:CDS
TGGCGATTGTAGTGCGTTCG+TGG 0.495666 2:+66630019 MsG0280010245.01.T01:CDS
AGGGGTCTTCTTAAGCGAGT+TGG 0.504459 2:+66633005 MsG0280010245.01.T01:CDS
TCGCAAGCAGCGGAAGATGC+AGG 0.507394 2:+66632966 MsG0280010245.01.T01:CDS
CAAGAGCACAAACACCGGCA+CGG 0.514774 2:-66631951 None:intergenic
AGGTACTTGTACAGGGCTAA+AGG 0.518239 2:+66633093 MsG0280010245.01.T01:CDS
TTCGTGGCGGAGCTTTGGGG+AGG 0.518569 2:+66630035 MsG0280010245.01.T01:CDS
ACGTTCATCTGTGGCCGTGC+CGG 0.520688 2:+66631937 MsG0280010245.01.T01:CDS
CGTCTTGTGCATTGGTGTCA+CGG 0.521333 2:+66632643 MsG0280010245.01.T01:CDS
TTAAATGTGGACAACTTTCG+CGG 0.529767 2:+66631272 MsG0280010245.01.T01:CDS
TCGTGGCGGAGCTTTGGGGA+GGG 0.533471 2:+66630036 MsG0280010245.01.T01:CDS
TCATCTTACGAGAGGCCAAT+CGG 0.533609 2:+66630229 MsG0280010245.01.T01:CDS
GGAATTTGCCACGGCATCAG+TGG 0.534765 2:+66633026 MsG0280010245.01.T01:CDS
GGCAATTATCCCTCCAGTGA+AGG 0.536493 2:+66632607 MsG0280010245.01.T01:CDS
AGCACCAAGAGCACAAACAC+CGG 0.540687 2:-66631956 None:intergenic
TTTGAGATATGTGAGAAGGA+TGG 0.542081 2:+66630067 MsG0280010245.01.T01:CDS
GGTGTGACAGATAGTCGCTT+GGG 0.547394 2:+66630149 MsG0280010245.01.T01:CDS
GCGTTCGTGGCGGAGCTTTG+GGG 0.552576 2:+66630032 MsG0280010245.01.T01:CDS
TCCAGGTGTTCAAATCTACA+TGG 0.554181 2:-66631431 None:intergenic
AGATGAGGTGGAAGATGTCA+AGG 0.556890 2:+66632546 MsG0280010245.01.T01:CDS
AGTGAGACATGGGGTTCTAG+TGG 0.556968 2:+66631017 MsG0280010245.01.T01:CDS
AGTGATGGAGAATGGATTGG+TGG 0.560277 2:+66629982 None:intergenic
GTGGAGAAGACTATAAAGGA+AGG 0.561772 2:+66630128 MsG0280010245.01.T01:CDS
TTAAGGTGGTGAGTGAGACA+TGG 0.563607 2:+66631006 MsG0280010245.01.T01:intron
TAAGGTGGTGAGTGAGACAT+GGG 0.563863 2:+66631007 MsG0280010245.01.T01:intron
TCCATGTAGATTTGAACACC+TGG 0.573793 2:+66631430 MsG0280010245.01.T01:CDS
GAAGGACTATACGCTTTACA+CGG 0.574930 2:+66631049 MsG0280010245.01.T01:CDS
AGGAGAAGTAGTGTGGAAGA+GGG 0.575038 2:+66632986 MsG0280010245.01.T01:CDS
GAATTTGCCACGGCATCAGT+GGG 0.580597 2:+66633027 MsG0280010245.01.T01:CDS
GATTTCTGTACAATTAAATG+TGG 0.580639 2:+66631259 MsG0280010245.01.T01:CDS
GTACAGAGAAAGAAAGACAT+AGG 0.584385 2:-66633054 None:intergenic
AGGAGTGATGGAGAATGGAT+TGG 0.586052 2:+66629979 None:intergenic
AGGTGTGACAGATAGTCGCT+TGG 0.588165 2:+66630148 MsG0280010245.01.T01:CDS
AGATTCACTTCCTTCACTGG+AGG 0.588226 2:-66632617 None:intergenic
GCTGTTATAGCTAAGCATGC+TGG 0.588262 2:+66631976 MsG0280010245.01.T01:CDS
GGAACTTAAGCCAGATGAGG+TGG 0.592388 2:+66632534 MsG0280010245.01.T01:CDS
ACAAGCGTAAGAGTTACTCC+AGG 0.600044 2:-66632670 None:intergenic
GAATGTAGATTGTGTTAGTG+TGG 0.604299 2:+66630109 MsG0280010245.01.T01:CDS
GTACAGATTGACAGGAAACA+AGG 0.604491 2:+66633073 MsG0280010245.01.T01:CDS
AATCTGACCGTCTTGTGCAT+TGG 0.606132 2:+66632635 MsG0280010245.01.T01:CDS
AAGGACTATACGCTTTACAC+GGG 0.607848 2:+66631050 MsG0280010245.01.T01:CDS
TTTAAAACTACGCCTTACAA+CGG 0.608064 2:-66631228 None:intergenic
AAGCGAGTTGGAATTTGCCA+CGG 0.608188 2:+66633017 MsG0280010245.01.T01:CDS
GATTCACTTCCTTCACTGGA+GGG 0.611653 2:-66632616 None:intergenic
AGGTGTTCCCACTGATGCCG+TGG 0.612064 2:-66633034 None:intergenic
GGAGAAGTAGTGTGGAAGAG+GGG 0.618091 2:+66632987 MsG0280010245.01.T01:CDS
TTCTAGTGGGAACCGTGTGA+AGG 0.618170 2:+66631031 MsG0280010245.01.T01:CDS
GTGAGACATGGGGTTCTAGT+GGG 0.619681 2:+66631018 MsG0280010245.01.T01:CDS
GTTGTTTCTCATCTTACGAG+AGG 0.625899 2:+66630221 MsG0280010245.01.T01:CDS
AGGGTTTGAGATATGTGAGA+AGG 0.627097 2:+66630063 MsG0280010245.01.T01:CDS
AGGACTATACGCTTTACACG+GGG 0.636276 2:+66631051 MsG0280010245.01.T01:CDS
AAGATGCAGGAGAAGTAGTG+TGG 0.637341 2:+66632979 MsG0280010245.01.T01:CDS
GGCCACAGATGAACGTCACA+CGG 0.640066 2:-66631930 None:intergenic
TACGCTTGTAAAAGCAGCCG+AGG 0.641247 2:+66632684 MsG0280010245.01.T01:CDS
CGATTGTAGTGCGTTCGTGG+CGG 0.650620 2:+66630022 MsG0280010245.01.T01:CDS
CGTGACACCAATGCACAAGA+CGG 0.665767 2:-66632642 None:intergenic
CATGGAACTTAAGCCAGATG+AGG 0.673066 2:+66632531 MsG0280010245.01.T01:CDS
GGAAACAAGGTACTTGTACA+GGG 0.673244 2:+66633086 MsG0280010245.01.T01:CDS
AGCCGTGTGACGTTCATCTG+TGG 0.685914 2:+66631928 MsG0280010245.01.T01:intron
GATGAGGTGGAAGATGTCAA+GGG 0.689281 2:+66632547 MsG0280010245.01.T01:CDS
GGACTATACGCTTTACACGG+GGG 0.705263 2:+66631052 MsG0280010245.01.T01:CDS
AAGGTGGTGAGTGAGACATG+GGG 0.727439 2:+66631008 MsG0280010245.01.T01:intron
AAAGCGTATAGTCCTTCACA+CGG 0.761639 2:-66631043 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTCATTATAAAAAAAATAAA+GGG - Chr2:66632718-66632737 None:intergenic 10.0%
!! CCTCATTATAAAAAAAATAA+AGG - Chr2:66632719-66632738 None:intergenic 15.0%
!!! CCTTTATTTTTTTTATAATG+AGG + Chr2:66632716-66632735 MsG0280010245.01.T01:intron 15.0%
!!! TTTTTTTTTGATAGAAATGA+GGG - Chr2:66630417-66630436 None:intergenic 15.0%
!!! TTTTTTTTTTGATAGAAATG+AGG - Chr2:66630418-66630437 None:intergenic 15.0%
!! AAACTTTGATTGTTCAATTT+AGG - Chr2:66631843-66631862 None:intergenic 20.0%
!! ACAATTTCTTTACCATAATT+AGG + Chr2:66632925-66632944 MsG0280010245.01.T01:intron 20.0%
!! ATTCATCATAACCATAAATT+TGG - Chr2:66631475-66631494 None:intergenic 20.0%
!! CTTATAAGTATTTAACTAAG+TGG + Chr2:66630970-66630989 MsG0280010245.01.T01:intron 20.0%
!! TATTAATTACGTTAAACAGA+TGG - Chr2:66631522-66631541 None:intergenic 20.0%
!! TTAGTATTTCCCTAATATTT+GGG + Chr2:66630476-66630495 MsG0280010245.01.T01:intron 20.0%
!!! TAATTAAAAGCCAATTTTCA+TGG - Chr2:66632365-66632384 None:intergenic 20.0%
!!! TGTTAATATATTTTGTTGTC+TGG + Chr2:66631726-66631745 MsG0280010245.01.T01:intron 20.0%
!!! TTACTTTTAGCTGATATTAT+GGG + Chr2:66630336-66630355 MsG0280010245.01.T01:intron 20.0%
!!! TTATGATGAATTTTGAAACA+TGG + Chr2:66631484-66631503 MsG0280010245.01.T01:CDS 20.0%
!!! TTTACCATAATTAGGTTTTT+GGG + Chr2:66632933-66632952 MsG0280010245.01.T01:intron 20.0%
!!! TTTACTTTTAGCTGATATTA+TGG + Chr2:66630335-66630354 MsG0280010245.01.T01:intron 20.0%
!!! TTTTTTCTTCCCAAATATTA+GGG - Chr2:66630488-66630507 None:intergenic 20.0%
!!! TTTTTTTCTTCCCAAATATT+AGG - Chr2:66630489-66630508 None:intergenic 20.0%
! AATAAAGGGAAATATTACCT+CGG - Chr2:66632704-66632723 None:intergenic 25.0%
! AATGCAATTTAGATGGTTTA+TGG + Chr2:66631312-66631331 MsG0280010245.01.T01:intron 25.0%
! AGTAAATGTCTAATTTGAGT+CGG - Chr2:66630321-66630340 None:intergenic 25.0%
! AGTTGAACATCTGAAAATAA+TGG - Chr2:66631411-66631430 None:intergenic 25.0%
! CTTAGTATTTCCCTAATATT+TGG + Chr2:66630475-66630494 MsG0280010245.01.T01:intron 25.0%
! GATTTCTGTACAATTAAATG+TGG + Chr2:66631259-66631278 MsG0280010245.01.T01:CDS 25.0%
! TCACATAAATGCTTATGTAT+AGG - Chr2:66630940-66630959 None:intergenic 25.0%
! TCATTCTTAAACAAGCATAT+CGG + Chr2:66632243-66632262 MsG0280010245.01.T01:intron 25.0%
! TCCAATTTACACATGAATTT+CGG + Chr2:66632112-66632131 MsG0280010245.01.T01:intron 25.0%
! TGCAAAAATGCAATTCAATT+AGG - Chr2:66630759-66630778 None:intergenic 25.0%
! TTAATAAAATTCGTCGCTTA+TGG + Chr2:66630182-66630201 MsG0280010245.01.T01:CDS 25.0%
! TTAATGAAGTTACTTGGTAT+TGG - Chr2:66631367-66631386 None:intergenic 25.0%
! TTTATCCTTAGGATTAAGTT+AGG + Chr2:66631776-66631795 MsG0280010245.01.T01:intron 25.0%
! TTTATGCTTGAAGATTGTTA+AGG + Chr2:66631138-66631157 MsG0280010245.01.T01:intron 25.0%
!! CTTTACCATAATTAGGTTTT+TGG + Chr2:66632932-66632951 MsG0280010245.01.T01:intron 25.0%
!!! ATGTAGTTTTTCCTTGTTTT+CGG + Chr2:66630384-66630403 MsG0280010245.01.T01:intron 25.0%
!!! GTGGTTATGTATTACTTTTA+AGG + Chr2:66630989-66631008 MsG0280010245.01.T01:intron 25.0%
!!! GTTAAACTTCTTTTTCGTAT+TGG + Chr2:66632136-66632155 MsG0280010245.01.T01:intron 25.0%
!!! GTTATGTATTACTTTTAAGG+TGG + Chr2:66630992-66631011 MsG0280010245.01.T01:intron 25.0%
!!! TACTTTTAGCTGATATTATG+GGG + Chr2:66630337-66630356 MsG0280010245.01.T01:intron 25.0%
AACTACATAGAAATTAACCG+AGG - Chr2:66630372-66630391 None:intergenic 30.0%
AATAACTATAGGGCAAATCA+GGG - Chr2:66632193-66632212 None:intergenic 30.0%
ACCGAAATTCATGTGTAAAT+TGG - Chr2:66632116-66632135 None:intergenic 30.0%
ACTACATAGAAATTAACCGA+GGG - Chr2:66630371-66630390 None:intergenic 30.0%
AGAGATTACTTGACTATTAC+TGG + Chr2:66632004-66632023 MsG0280010245.01.T01:intron 30.0%
AGATGGTTTATGGATATATC+AGG + Chr2:66631322-66631341 MsG0280010245.01.T01:intron 30.0%
AGCTTGTATTTGAATATGGT+AGG - Chr2:66632760-66632779 None:intergenic 30.0%
AGTGGTTAATGCAATTTAGA+TGG + Chr2:66631305-66631324 MsG0280010245.01.T01:intron 30.0%
ATACCTCTTTGAATTGTCTA+AGG - Chr2:66632053-66632072 None:intergenic 30.0%
ATTAAAAATCGTTTCTCGAG+TGG + Chr2:66632586-66632605 MsG0280010245.01.T01:CDS 30.0%
ATTTGAACACCTGGAAATTA+TGG + Chr2:66631439-66631458 MsG0280010245.01.T01:CDS 30.0%
CATATTCAAATACAAGCTTC+AGG + Chr2:66632762-66632781 MsG0280010245.01.T01:intron 30.0%
CATTTCCTAACTTAATCCTA+AGG - Chr2:66631784-66631803 None:intergenic 30.0%
CTATCCCAAAAACCTAATTA+TGG - Chr2:66632940-66632959 None:intergenic 30.0%
CTGAAGCTTGTATTTGAATA+TGG - Chr2:66632764-66632783 None:intergenic 30.0%
CTTAGGATTAAGTTAGGAAA+TGG + Chr2:66631782-66631801 MsG0280010245.01.T01:intron 30.0%
GTTATAACTTCATCCACAAT+TGG - Chr2:66632402-66632421 None:intergenic 30.0%
TACGTTAAACAGATGGTTTA+TGG - Chr2:66631515-66631534 None:intergenic 30.0%
TCAGGTTTGTGCAAATTTAT+CGG - Chr2:66632812-66632831 None:intergenic 30.0%
TCTGCCATACAATAACTATA+GGG - Chr2:66632203-66632222 None:intergenic 30.0%
TTACCTTAGACAATTCAAAG+AGG + Chr2:66632047-66632066 MsG0280010245.01.T01:intron 30.0%
TTCTGCCATACAATAACTAT+AGG - Chr2:66632204-66632223 None:intergenic 30.0%
TTGTGGTTAATGAAGTTACT+TGG - Chr2:66631373-66631392 None:intergenic 30.0%
TTTGCCCTATAGTTATTGTA+TGG + Chr2:66632196-66632215 MsG0280010245.01.T01:intron 30.0%
! AGGAATTATGAACGTTTTGA+TGG + Chr2:66632507-66632526 MsG0280010245.01.T01:intron 30.0%
! ATTTTGCAGTGTTCATTGTA+TGG + Chr2:66632841-66632860 MsG0280010245.01.T01:intron 30.0%
! TCCTTTACATCATATTGACT+CGG - Chr2:66632788-66632807 None:intergenic 30.0%
! TTTAAAACTACGCCTTACAA+CGG - Chr2:66631231-66631250 None:intergenic 30.0%
! TTTTTGACAGAAACCAATTG+TGG + Chr2:66632386-66632405 MsG0280010245.01.T01:intron 30.0%
!! GCTGTTTTCTAATTCTTCTT+AGG + Chr2:66630733-66630752 MsG0280010245.01.T01:intron 30.0%
!!! CATAATTAGGTTTTTGGGAT+AGG + Chr2:66632938-66632957 MsG0280010245.01.T01:intron 30.0%
!!! CGTATTGGTGCTTTTATTTT+TGG + Chr2:66632151-66632170 MsG0280010245.01.T01:intron 30.0%
!!! TGTAGTTTTTCCTTGTTTTC+GGG + Chr2:66630385-66630404 MsG0280010245.01.T01:intron 30.0%
AAGGCATATGTTCTTCATCA+TGG + Chr2:66632295-66632314 MsG0280010245.01.T01:intron 35.0%
ACACTCTAAACTTTCACGTT+TGG + Chr2:66630665-66630684 MsG0280010245.01.T01:intron 35.0%
AGATGTCCTTTGATGTATGA+AGG + Chr2:66632450-66632469 MsG0280010245.01.T01:intron 35.0%
ATAACTATAGGGCAAATCAG+GGG - Chr2:66632192-66632211 None:intergenic 35.0%
ATCAAAGTTTCAGCCTGAAA+TGG + Chr2:66631853-66631872 MsG0280010245.01.T01:intron 35.0%
ATGGCAGAACAGTTACTTAT+GGG + Chr2:66632215-66632234 MsG0280010245.01.T01:intron 35.0%
ATTCTGCTTCAGCAAATTCA+AGG + Chr2:66631167-66631186 MsG0280010245.01.T01:intron 35.0%
ATTTGCTCGTGTTTATCCTT+AGG + Chr2:66631765-66631784 MsG0280010245.01.T01:intron 35.0%
CAACGAAATTTAGACAGCTT+TGG - Chr2:66631583-66631602 None:intergenic 35.0%
CAATAACTATAGGGCAAATC+AGG - Chr2:66632194-66632213 None:intergenic 35.0%
CATTAACCACAATTTGAACG+TGG + Chr2:66631381-66631400 MsG0280010245.01.T01:intron 35.0%
CTACATAGAAATTAACCGAG+GGG - Chr2:66630370-66630389 None:intergenic 35.0%
GAATGTAGATTGTGTTAGTG+TGG + Chr2:66630109-66630128 MsG0280010245.01.T01:CDS 35.0%
GATGTCCTTTGATGTATGAA+GGG + Chr2:66632451-66632470 MsG0280010245.01.T01:intron 35.0%
GCTTAAAGACTGTCATAAGT+TGG - Chr2:66630812-66630831 None:intergenic 35.0%
GGTAGAAAATTAGCTCACAA+GGG + Chr2:66632426-66632445 MsG0280010245.01.T01:intron 35.0%
GTACAGAGAAAGAAAGACAT+AGG - Chr2:66633057-66633076 None:intergenic 35.0%
GTCGATGACATCCAAATTTA+TGG + Chr2:66631461-66631480 MsG0280010245.01.T01:CDS 35.0%
TACTCTCTATTTCATGCATC+TGG + Chr2:66631190-66631209 MsG0280010245.01.T01:CDS 35.0%
TAGTGTGGAGAAGACTATAA+AGG + Chr2:66630124-66630143 MsG0280010245.01.T01:CDS 35.0%
TATGGCAGAACAGTTACTTA+TGG + Chr2:66632214-66632233 MsG0280010245.01.T01:intron 35.0%
TCAAAGTTTCAGCCTGAAAT+GGG + Chr2:66631854-66631873 MsG0280010245.01.T01:intron 35.0%
TCATCCACATTCTTGTTACT+TGG - Chr2:66631112-66631131 None:intergenic 35.0%
TCTACCAAGTAACAAGAATG+TGG + Chr2:66631105-66631124 MsG0280010245.01.T01:intron 35.0%
TGGTAGAAAATTAGCTCACA+AGG + Chr2:66632425-66632444 MsG0280010245.01.T01:intron 35.0%
TTAAATGTGGACAACTTTCG+CGG + Chr2:66631272-66631291 MsG0280010245.01.T01:CDS 35.0%
TTACTTGACTATTACTGGTG+AGG + Chr2:66632009-66632028 MsG0280010245.01.T01:intron 35.0%
TTGAGATATGTGAGAAGGAT+GGG + Chr2:66630068-66630087 MsG0280010245.01.T01:CDS 35.0%
TTGGCTACAACTTCTATAAG+TGG - Chr2:66631564-66631583 None:intergenic 35.0%
! AAACGTGAAAGTTTAGAGTG+TGG - Chr2:66630666-66630685 None:intergenic 35.0%
! ATGAAGTTACTTGGTATTGG+TGG - Chr2:66631364-66631383 None:intergenic 35.0%
! TTTGAGATATGTGAGAAGGA+TGG + Chr2:66630067-66630086 MsG0280010245.01.T01:CDS 35.0%
!! AACGGCATACTTGGTTTTTA+AGG + Chr2:66631082-66631101 MsG0280010245.01.T01:CDS 35.0%
!! TATGAACGTTTTGATGGACA+TGG + Chr2:66632513-66632532 MsG0280010245.01.T01:CDS 35.0%
!! TGGTGGTTTGCTAAATTCAT+TGG + Chr2:66629999-66630018 MsG0280010245.01.T01:CDS 35.0%
!! TTTCGCGGTAACTTTTTAAG+TGG + Chr2:66631287-66631306 MsG0280010245.01.T01:intron 35.0%
AAAAACCGATCAGACATCTC+CGG - Chr2:66630563-66630582 None:intergenic 40.0%
AAAGCGTATAGTCCTTCACA+CGG - Chr2:66631046-66631065 None:intergenic 40.0%
AAATTCGTCGCTTATGGAGA+TGG + Chr2:66630188-66630207 MsG0280010245.01.T01:CDS 40.0%
AAGGACTATACGCTTTACAC+GGG + Chr2:66631050-66631069 MsG0280010245.01.T01:CDS 40.0%
ACACAATACCACTACCTACA+CGG + Chr2:66632271-66632290 MsG0280010245.01.T01:intron 40.0%
ATCCAAAGAGCAAGCAATGT+TGG - Chr2:66630271-66630290 None:intergenic 40.0%
ATGAATGGTGGCAAGTTGTT+CGG - Chr2:66630587-66630606 None:intergenic 40.0%
CAAGTTTGTCTCTGCATGAA+TGG - Chr2:66630602-66630621 None:intergenic 40.0%
CTGCAAAATCCATTGCAATC+AGG - Chr2:66632830-66632849 None:intergenic 40.0%
CTTTCTCTGTACAGATTGAC+AGG + Chr2:66633065-66633084 MsG0280010245.01.T01:CDS 40.0%
GAAGGACTATACGCTTTACA+CGG + Chr2:66631049-66631068 MsG0280010245.01.T01:CDS 40.0%
GACTTAACTTAGCCGTTGTA+AGG + Chr2:66631216-66631235 MsG0280010245.01.T01:CDS 40.0%
GCCGAGTCAATATGATGTAA+AGG + Chr2:66632784-66632803 MsG0280010245.01.T01:intron 40.0%
GGTTAACCACGTTCAAATTG+TGG - Chr2:66631390-66631409 None:intergenic 40.0%
GTACAGATTGACAGGAAACA+AGG + Chr2:66633073-66633092 MsG0280010245.01.T01:CDS 40.0%
GTGGAGAAGACTATAAAGGA+AGG + Chr2:66630128-66630147 MsG0280010245.01.T01:CDS 40.0%
GTGGATGAAGTTATAACAGC+TGG + Chr2:66632405-66632424 MsG0280010245.01.T01:intron 40.0%
GTGGTTAATGCACTTCGAAT+AGG - Chr2:66631545-66631564 None:intergenic 40.0%
TAACTATAGGGCAAATCAGG+GGG - Chr2:66632191-66632210 None:intergenic 40.0%
TCCAGGTGTTCAAATCTACA+TGG - Chr2:66631434-66631453 None:intergenic 40.0%
TCCATGTAGATTTGAACACC+TGG + Chr2:66631430-66631449 MsG0280010245.01.T01:CDS 40.0%
TGTCATCGACCATAATTTCC+AGG - Chr2:66631451-66631470 None:intergenic 40.0%
TGTTTATCGACCTCTCTAGA+CGG + Chr2:66630520-66630539 MsG0280010245.01.T01:intron 40.0%
TTGCACAAACCTGATTGCAA+TGG + Chr2:66632818-66632837 MsG0280010245.01.T01:intron 40.0%
! AAGGGCATGGAAGAAATACT+GGG + Chr2:66632469-66632488 MsG0280010245.01.T01:intron 40.0%
! AGGAAACAAGGTACTTGTAC+AGG + Chr2:66633085-66633104 MsG0280010245.01.T01:CDS 40.0%
! AGGGTTTGAGATATGTGAGA+AGG + Chr2:66630063-66630082 MsG0280010245.01.T01:CDS 40.0%
! ATAGGAATTTTCGCAAGCAG+CGG + Chr2:66632956-66632975 MsG0280010245.01.T01:intron 40.0%
! CTTTCACGTTTGGTTCAGAA+TGG + Chr2:66630675-66630694 MsG0280010245.01.T01:intron 40.0%
! GAAAGTTTAGAGTGTGGTGT+TGG - Chr2:66630660-66630679 None:intergenic 40.0%
! GGAAACAAGGTACTTGTACA+GGG + Chr2:66633086-66633105 MsG0280010245.01.T01:CDS 40.0%
!! GTTGTTTCTCATCTTACGAG+AGG + Chr2:66630221-66630240 MsG0280010245.01.T01:CDS 40.0%
!! TGTCGACTTGCCATGAAAAT+TGG + Chr2:66632352-66632371 MsG0280010245.01.T01:intron 40.0%
AAACAGCACTGCACAACACT+TGG - Chr2:66630720-66630739 None:intergenic 45.0%
AAATGGGAGGATGGGAAGTA+AGG + Chr2:66631870-66631889 MsG0280010245.01.T01:intron 45.0%
AAGATGCAGGAGAAGTAGTG+TGG + Chr2:66632979-66632998 MsG0280010245.01.T01:CDS 45.0%
AAGTTTCAGCCTGAAATGGG+AGG + Chr2:66631857-66631876 MsG0280010245.01.T01:intron 45.0%
AATCTGACCGTCTTGTGCAT+TGG + Chr2:66632635-66632654 MsG0280010245.01.T01:CDS 45.0%
ACAAGCGTAAGAGTTACTCC+AGG - Chr2:66632673-66632692 None:intergenic 45.0%
AGATGAGGTGGAAGATGTCA+AGG + Chr2:66632546-66632565 MsG0280010245.01.T01:CDS 45.0%
AGATTCACTTCCTTCACTGG+AGG - Chr2:66632620-66632639 None:intergenic 45.0%
AGCCAACATTGCTTGCTCTT+TGG + Chr2:66630266-66630285 MsG0280010245.01.T01:intron 45.0%
AGGACTATACGCTTTACACG+GGG + Chr2:66631051-66631070 MsG0280010245.01.T01:CDS 45.0%
AGGAGAAGTAGTGTGGAAGA+GGG + Chr2:66632986-66633005 MsG0280010245.01.T01:CDS 45.0%
AGGGCATGGAAGAAATACTG+GGG + Chr2:66632470-66632489 MsG0280010245.01.T01:intron 45.0%
ATACCACTACCTACACGGTA+AGG + Chr2:66632276-66632295 MsG0280010245.01.T01:intron 45.0%
CATGGAACTTAAGCCAGATG+AGG + Chr2:66632531-66632550 MsG0280010245.01.T01:CDS 45.0%
CCATGCCCTTCATACATCAA+AGG - Chr2:66632459-66632478 None:intergenic 45.0%
CCTTTGATGTATGAAGGGCA+TGG + Chr2:66632456-66632475 MsG0280010245.01.T01:intron 45.0%
CTTGACTATTACTGGTGAGG+AGG + Chr2:66632012-66632031 MsG0280010245.01.T01:intron 45.0%
GAACATATGCCTTACCGTGT+AGG - Chr2:66632288-66632307 None:intergenic 45.0%
GATGAGGTGGAAGATGTCAA+GGG + Chr2:66632547-66632566 MsG0280010245.01.T01:CDS 45.0%
GATTCACTTCCTTCACTGGA+GGG - Chr2:66632619-66632638 None:intergenic 45.0%
GCTGTTATAGCTAAGCATGC+TGG + Chr2:66631976-66631995 MsG0280010245.01.T01:CDS 45.0%
GGTAACTGTCTGTCTTTAGC+CGG + Chr2:66630541-66630560 MsG0280010245.01.T01:intron 45.0%
GTCAGATTCACTTCCTTCAC+TGG - Chr2:66632623-66632642 None:intergenic 45.0%
GTTTGTCTCTGCATGAATGG+TGG - Chr2:66630599-66630618 None:intergenic 45.0%
TAAGGTGGTGAGTGAGACAT+GGG + Chr2:66631007-66631026 MsG0280010245.01.T01:intron 45.0%
TCATCTTACGAGAGGCCAAT+CGG + Chr2:66630229-66630248 MsG0280010245.01.T01:CDS 45.0%
TTAAGGTGGTGAGTGAGACA+TGG + Chr2:66631006-66631025 MsG0280010245.01.T01:intron 45.0%
TTGACATCTTCCACCTCATC+TGG - Chr2:66632547-66632566 None:intergenic 45.0%
TTTAGCCGGAGATGTCTGAT+CGG + Chr2:66630555-66630574 MsG0280010245.01.T01:intron 45.0%
! AAGCGAGTTGGAATTTGCCA+CGG + Chr2:66633017-66633036 MsG0280010245.01.T01:CDS 45.0%
! CGTTTGGTTCAGAATGGTGT+CGG + Chr2:66630681-66630700 MsG0280010245.01.T01:intron 45.0%
! GAAGGGCATGGAAGAAATAC+TGG + Chr2:66632468-66632487 MsG0280010245.01.T01:intron 45.0%
! TAAAGCATCTGCACACCGAT+TGG - Chr2:66630247-66630266 None:intergenic 45.0%
!! TGGTGTTGGTGTTTGAGAAG+AGG - Chr2:66630646-66630665 None:intergenic 45.0%
!! TTACACGGGGGTTTTTGGAA+CGG + Chr2:66631064-66631083 MsG0280010245.01.T01:CDS 45.0%
!!! GGTTTTTGGAACGGCATACT+TGG + Chr2:66631073-66631092 MsG0280010245.01.T01:CDS 45.0%
AAGGTGGTGAGTGAGACATG+GGG + Chr2:66631008-66631027 MsG0280010245.01.T01:intron 50.0%
ACTTCCCATCCTCCCATTTC+AGG - Chr2:66631869-66631888 None:intergenic 50.0%
AGGGGTCTTCTTAAGCGAGT+TGG + Chr2:66633005-66633024 MsG0280010245.01.T01:CDS 50.0%
AGGTGTGACAGATAGTCGCT+TGG + Chr2:66630148-66630167 MsG0280010245.01.T01:CDS 50.0%
ATGCCTTACCGTGTAGGTAG+TGG - Chr2:66632282-66632301 None:intergenic 50.0%
CAGACAGTTACCGTCTAGAG+AGG - Chr2:66630533-66630552 None:intergenic 50.0%
CAGGAGAAGTAGTGTGGAAG+AGG + Chr2:66632985-66633004 MsG0280010245.01.T01:CDS 50.0%
CGTCGCTTATGGAGATGGAT+TGG + Chr2:66630193-66630212 MsG0280010245.01.T01:CDS 50.0%
CGTGACACCAATGCACAAGA+CGG - Chr2:66632645-66632664 None:intergenic 50.0%
GAAGAAATACTGGGGCTGCT+CGG + Chr2:66632478-66632497 MsG0280010245.01.T01:intron 50.0%
GAATTTGCCACGGCATCAGT+GGG + Chr2:66633027-66633046 MsG0280010245.01.T01:CDS 50.0%
GGAACTTAAGCCAGATGAGG+TGG + Chr2:66632534-66632553 MsG0280010245.01.T01:CDS 50.0%
GGACTATACGCTTTACACGG+GGG + Chr2:66631052-66631071 MsG0280010245.01.T01:CDS 50.0%
GGAGAAGTAGTGTGGAAGAG+GGG + Chr2:66632987-66633006 MsG0280010245.01.T01:CDS 50.0%
GGCAATTATCCCTCCAGTGA+AGG + Chr2:66632607-66632626 MsG0280010245.01.T01:CDS 50.0%
GGTGTGACAGATAGTCGCTT+GGG + Chr2:66630149-66630168 MsG0280010245.01.T01:CDS 50.0%
TACGCTTGTAAAAGCAGCCG+AGG + Chr2:66632684-66632703 MsG0280010245.01.T01:CDS 50.0%
TCAGCCTGAAATGGGAGGAT+GGG + Chr2:66631862-66631881 MsG0280010245.01.T01:intron 50.0%
TTATGGGGATTGCTACCCCT+CGG + Chr2:66630352-66630371 MsG0280010245.01.T01:intron 50.0%
TTCAGCCTGAAATGGGAGGA+TGG + Chr2:66631861-66631880 MsG0280010245.01.T01:intron 50.0%
TTCTAGTGGGAACCGTGTGA+AGG + Chr2:66631031-66631050 MsG0280010245.01.T01:CDS 50.0%
! ACGCTTTACACGGGGGTTTT+TGG + Chr2:66631059-66631078 MsG0280010245.01.T01:CDS 50.0%
! AGCACCAAGAGCACAAACAC+CGG - Chr2:66631959-66631978 None:intergenic 50.0%
! AGTGAGACATGGGGTTCTAG+TGG + Chr2:66631017-66631036 MsG0280010245.01.T01:CDS 50.0%
! GTGAGACATGGGGTTCTAGT+GGG + Chr2:66631018-66631037 MsG0280010245.01.T01:CDS 50.0%
!! CGTCTTGTGCATTGGTGTCA+CGG + Chr2:66632643-66632662 MsG0280010245.01.T01:CDS 50.0%
AGCCGTGTGACGTTCATCTG+TGG + Chr2:66631928-66631947 MsG0280010245.01.T01:intron 55.0%
AGGGCGTAAGCCCGAAAACA+AGG - Chr2:66630398-66630417 None:intergenic 55.0%
CGATTGTAGTGCGTTCGTGG+CGG + Chr2:66630022-66630041 MsG0280010245.01.T01:CDS 55.0%
GGAATTTGCCACGGCATCAG+TGG + Chr2:66633026-66633045 MsG0280010245.01.T01:CDS 55.0%
GGCCACAGATGAACGTCACA+CGG - Chr2:66631933-66631952 None:intergenic 55.0%
TGGCGATTGTAGTGCGTTCG+TGG + Chr2:66630019-66630038 MsG0280010245.01.T01:CDS 55.0%
TGGGAGGATGGGAAGTAAGG+TGG + Chr2:66631873-66631892 MsG0280010245.01.T01:intron 55.0%
! CAAGAGCACAAACACCGGCA+CGG - Chr2:66631954-66631973 None:intergenic 55.0%
ACGTTCATCTGTGGCCGTGC+CGG + Chr2:66631937-66631956 MsG0280010245.01.T01:CDS 60.0%
AGGTGTTCCCACTGATGCCG+TGG - Chr2:66633037-66633056 None:intergenic 60.0%
TCGCAAGCAGCGGAAGATGC+AGG + Chr2:66632966-66632985 MsG0280010245.01.T01:CDS 60.0%
! CGTGCCGGTGTTTGTGCTCT+TGG + Chr2:66631952-66631971 MsG0280010245.01.T01:CDS 60.0%
! TGCGTTCGTGGCGGAGCTTT+GGG + Chr2:66630031-66630050 MsG0280010245.01.T01:CDS 60.0%
!! CATTGGTGTCACGGTGCTCC+TGG + Chr2:66632652-66632671 MsG0280010245.01.T01:CDS 60.0%
!! GAGCTTTGGGGAGGGTTGGA+GGG + Chr2:66630044-66630063 MsG0280010245.01.T01:CDS 60.0%
! GCGTTCGTGGCGGAGCTTTG+GGG + Chr2:66630032-66630051 MsG0280010245.01.T01:CDS 65.0%
! GTGCGTTCGTGGCGGAGCTT+TGG + Chr2:66630030-66630049 MsG0280010245.01.T01:CDS 65.0%
!! GGAGCTTTGGGGAGGGTTGG+AGG + Chr2:66630043-66630062 MsG0280010245.01.T01:CDS 65.0%
!! TCGTGGCGGAGCTTTGGGGA+GGG + Chr2:66630036-66630055 MsG0280010245.01.T01:CDS 65.0%
!! TTCGTGGCGGAGCTTTGGGG+AGG + Chr2:66630035-66630054 MsG0280010245.01.T01:CDS 65.0%
CTGGGGCTGCTCGGACTTGC+AGG + Chr2:66632487-66632506 MsG0280010245.01.T01:intron 70.0%
!! GGCGGAGCTTTGGGGAGGGT+TGG + Chr2:66630040-66630059 MsG0280010245.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 66629993 66633112 66629993 ID=MsG0280010245.01;Name=MsG0280010245.01
Chr2 mRNA 66629993 66633112 66629993 ID=MsG0280010245.01.T01;Parent=MsG0280010245.01;Name=MsG0280010245.01.T01;_AED=0.62;_eAED=0.64;_QI=0|0|0|0.71|1|1|7|0|322
Chr2 exon 66629993 66630250 66629993 ID=MsG0280010245.01.T01:exon:14326;Parent=MsG0280010245.01.T01
Chr2 exon 66631011 66631103 66631011 ID=MsG0280010245.01.T01:exon:14327;Parent=MsG0280010245.01.T01
Chr2 exon 66631179 66631293 66631179 ID=MsG0280010245.01.T01:exon:14328;Parent=MsG0280010245.01.T01
Chr2 exon 66631421 66631505 66631421 ID=MsG0280010245.01.T01:exon:14329;Parent=MsG0280010245.01.T01
Chr2 exon 66631930 66631997 66631930 ID=MsG0280010245.01.T01:exon:14330;Parent=MsG0280010245.01.T01
Chr2 exon 66632509 66632705 66632509 ID=MsG0280010245.01.T01:exon:14331;Parent=MsG0280010245.01.T01
Chr2 exon 66632960 66633112 66632960 ID=MsG0280010245.01.T01:exon:14332;Parent=MsG0280010245.01.T01
Chr2 CDS 66629993 66630250 66629993 ID=MsG0280010245.01.T01:cds;Parent=MsG0280010245.01.T01
Chr2 CDS 66631011 66631103 66631011 ID=MsG0280010245.01.T01:cds;Parent=MsG0280010245.01.T01
Chr2 CDS 66631179 66631293 66631179 ID=MsG0280010245.01.T01:cds;Parent=MsG0280010245.01.T01
Chr2 CDS 66631421 66631505 66631421 ID=MsG0280010245.01.T01:cds;Parent=MsG0280010245.01.T01
Chr2 CDS 66631930 66631997 66631930 ID=MsG0280010245.01.T01:cds;Parent=MsG0280010245.01.T01
Chr2 CDS 66632509 66632705 66632509 ID=MsG0280010245.01.T01:cds;Parent=MsG0280010245.01.T01
Chr2 CDS 66632960 66633112 66632960 ID=MsG0280010245.01.T01:cds;Parent=MsG0280010245.01.T01
Gene Sequence

>MsG0280010245.01.T01

ATGGATTGGTGGTTTGCTAAATTCATTGGCGATTGTAGTGCGTTCGTGGCGGAGCTTTGGGGAGGGTTGGAGGGTTTGAGATATGTGAGAAGGATGGGATATACAGCAGTTGAATTGAATGTAGATTGTGTTAGTGTGGAGAAGACTATAAAGGAAGGTGTGACAGATAGTCGCTTGGGTAGAGCATTGTTAATAAAATTCGTCGCTTATGGAGATGGATTGGAACGTGTTGTTTCTCATCTTACGAGAGGCCAATCGGTGGTGAGTGAGACATGGGGTTCTAGTGGGAACCGTGTGAAGGACTATACGCTTTACACGGGGGTTTTTGGAACGGCATACTTGGTTTTTAAGCAAATTCAAGGTACTCTCTATTTCATGCATCTGGTAAGACTTAACTTAGCCGTTGTAAGGCGTAGTTTTAAAAGAGAAATGATTTCTGTACAATTAAATGTGGACAACTTTCGCGATGTTCAACTCCATGTAGATTTGAACACCTGGAAATTATGGTCGATGACATCCAAATTTATGGTTATGATGAATTTTGAAACATGCCGTGTGACGTTCATCTGTGGCCGTGCCGGTGTTTGTGCTCTTGGTGCTGTTATAGCTAAGCATGCTGGAATTATGAACGTTTTGATGGACATGGAACTTAAGCCAGATGAGGTGGAAGATGTCAAGGGTACGCTACGCTACATGATTAAAAATCGTTTCTCGAGTGGCAATTATCCCTCCAGTGAAGGAAGTGAATCTGACCGTCTTGTGCATTGGTGTCACGGTGCTCCTGGAGTAACTCTTACGCTTGTAAAAGCAGCCGAGGAATTTTCGCAAGCAGCGGAAGATGCAGGAGAAGTAGTGTGGAAGAGGGGTCTTCTTAAGCGAGTTGGAATTTGCCACGGCATCAGTGGGAACACCTATGTCTTTCTTTCTCTGTACAGATTGACAGGAAACAAGGTACTTGTACAGGGCTAA

Protein sequence

>MsG0280010245.01.T01

MDWWFAKFIGDCSAFVAELWGGLEGLRYVRRMGYTAVELNVDCVSVEKTIKEGVTDSRLGRALLIKFVAYGDGLERVVSHLTRGQSVVSETWGSSGNRVKDYTLYTGVFGTAYLVFKQIQGTLYFMHLVRLNLAVVRRSFKREMISVQLNVDNFRDVQLHVDLNTWKLWSMTSKFMVMMNFETCRVTFICGRAGVCALGAVIAKHAGIMNVLMDMELKPDEVEDVKGTLRYMIKNRFSSGNYPSSEGSESDRLVHWCHGAPGVTLTLVKAAEEFSQAAEDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNKVLVQG*