AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000210.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000210.01.T01 MTR_1g021270 63.580 324 62 3 6 274 271 593 5.97e-133 397
MsG0180000210.01.T01 MTR_1g021270 52.632 95 44 1 179 273 270 363 2.36e-25 110
MsG0180000210.01.T01 MTR_1g021270 38.372 86 52 1 310 395 31 115 1.41e-11 67.4
MsG0180000210.01.T01 MTR_1g021330 92.513 187 13 1 309 495 41 226 3.55e-119 355
MsG0180000210.01.T01 MTR_1g021330 64.516 93 33 0 4 96 278 370 2.83e-34 133
MsG0180000210.01.T01 MTR_1g021330 51.087 92 44 1 179 270 279 369 8.78e-22 97.4
MsG0180000210.01.T01 MTR_1g021320 62.654 324 61 6 6 274 522 840 2.37e-114 357
MsG0180000210.01.T01 MTR_1g021320 43.293 328 143 7 179 470 39 359 2.97e-66 229
MsG0180000210.01.T01 MTR_1g021320 48.039 102 52 1 179 280 521 621 6.50e-23 103
MsG0180000210.01.T01 MTR_1g021440 66.341 205 51 2 309 495 37 241 1.46e-84 263
MsG0180000210.01.T01 MTR_1g021440 66.341 205 51 2 309 495 37 241 5.48e-83 263
MsG0180000210.01.T01 MTR_1g021440 69.231 91 28 0 6 96 297 387 5.86e-39 146
MsG0180000210.01.T01 MTR_1g021440 48.039 102 43 2 179 271 296 396 7.42e-24 103
MsG0180000210.01.T01 MTR_1g021440 66.500 200 49 2 309 490 37 236 8.81e-83 258
MsG0180000210.01.T01 MTR_1g021440 66.500 200 49 2 309 490 37 236 2.57e-81 258
MsG0180000210.01.T01 MTR_1g021440 69.231 91 28 0 6 96 279 369 4.55e-39 146
MsG0180000210.01.T01 MTR_1g021440 28.000 325 151 8 28 271 56 378 4.29e-25 107
MsG0180000210.01.T01 MTR_1g021350 56.904 239 51 6 281 493 13 225 1.71e-77 246
MsG0180000210.01.T01 MTR_1g021350 68.966 87 25 1 12 96 247 333 7.29e-30 120
MsG0180000210.01.T01 MTR_1g021350 29.078 282 157 6 28 270 55 332 1.07e-20 93.6
MsG0180000210.01.T01 MTR_1g021410 64.021 189 50 5 309 495 37 209 1.01e-67 221
MsG0180000210.01.T01 MTR_1g021410 67.677 99 31 1 179 277 264 361 3.47e-38 143
MsG0180000210.01.T01 MTR_1g021410 46.154 91 49 0 7 97 266 356 1.06e-21 97.1
MsG0180000210.01.T01 MTR_1g021400 63.102 187 53 4 309 495 45 215 1.80e-65 216
MsG0180000210.01.T01 MTR_1g021400 37.294 303 133 7 28 274 64 365 8.13e-37 139
MsG0180000210.01.T01 MTR_1g021400 49.451 91 46 0 7 97 273 363 5.94e-22 97.8
MsG0180000210.01.T01 MTR_1g021360 67.516 157 46 2 281 437 17 168 1.37e-64 217
MsG0180000210.01.T01 MTR_1g021360 38.701 354 144 10 171 489 31 346 4.67e-61 207
MsG0180000210.01.T01 MTR_1g021360 78.313 83 18 0 6 88 390 472 2.29e-39 149
MsG0180000210.01.T01 MTR_1g021360 29.720 286 161 8 7 263 198 472 8.71e-21 95.5
MsG0180000210.01.T01 MTR_1g021435 69.930 143 40 2 309 449 37 178 1.71e-60 203
MsG0180000210.01.T01 MTR_1g021435 70.755 106 21 1 179 274 264 369 2.68e-44 160
MsG0180000210.01.T01 MTR_1g021435 48.039 102 42 2 7 97 266 367 1.62e-24 105
MsG0180000210.01.T01 MTR_1g021380 59.783 184 50 3 309 492 36 195 6.20e-60 201
MsG0180000210.01.T01 MTR_1g021380 35.127 316 140 11 7 269 37 340 1.71e-36 138
MsG0180000210.01.T01 MTR_1g021380 47.959 98 46 2 7 102 256 350 3.96e-22 97.8
MsG0180000210.01.T01 MTR_1g021290 42.086 278 121 8 179 438 41 296 6.10e-55 187
MsG0180000210.01.T01 MTR_1g021500 45.000 220 70 5 309 495 41 242 9.86e-44 160
MsG0180000210.01.T01 MTR_1g021500 45.000 220 70 5 309 495 41 242 1.27e-43 161
MsG0180000210.01.T01 MTR_1g021295 69.767 86 25 1 6 90 132 217 8.95e-36 132
MsG0180000210.01.T01 MTR_1g021295 50.000 88 42 2 179 265 131 217 6.69e-20 89.0
MsG0180000210.01.T01 MTR_6g036740 60.714 84 31 2 9 90 109 192 4.58e-25 106
MsG0180000210.01.T01 MTR_6g036740 44.776 67 36 1 191 257 118 183 2.22e-11 65.5
MsG0180000210.01.T01 MTR_3g005420 26.106 226 145 6 166 384 169 379 9.40e-14 73.9
MsG0180000210.01.T01 MTR_3g005460 26.250 240 143 8 157 387 142 356 3.16e-12 69.3
MsG0180000210.01.T01 MTR_7g050640 37.838 74 46 0 310 383 29 102 1.71e-11 61.6
MsG0180000210.01.T01 MTR_7g050710 34.259 108 69 2 310 417 29 134 1.81e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000210.01.T01 AT4G33280 51.429 105 50 1 309 412 38 142 5.30e-29 117
MsG0180000210.01.T01 AT4G33280 54.167 96 43 1 309 403 38 133 2.18e-28 114
MsG0180000210.01.T01 AT4G33280 54.167 96 43 1 309 403 38 133 1.96e-27 114
MsG0180000210.01.T01 AT4G34400 37.647 85 53 0 309 393 30 114 1.00e-15 79.3
MsG0180000210.01.T01 AT4G34400 37.647 85 53 0 309 393 30 114 1.00e-15 79.3
MsG0180000210.01.T01 AT3G06220 27.273 110 72 2 310 419 25 126 9.73e-13 67.0
MsG0180000210.01.T01 AT5G60130 40.909 88 47 2 309 391 28 115 4.09e-12 66.6
MsG0180000210.01.T01 AT5G60130 40.909 88 47 2 309 391 2 89 6.46e-12 67.0
MsG0180000210.01.T01 AT5G60130 40.909 88 47 2 309 391 28 115 7.61e-12 66.6
MsG0180000210.01.T01 AT3G18990 34.951 103 57 2 285 384 1 96 8.07e-12 67.4
MsG0180000210.01.T01 AT3G18990 34.951 103 57 2 285 384 1 96 9.20e-12 67.0
MsG0180000210.01.T01 AT5G60130 40.909 88 47 2 309 391 28 115 9.64e-12 66.6
MsG0180000210.01.T01 AT5G60130 40.909 88 47 2 309 391 25 112 9.77e-12 66.6
MsG0180000210.01.T01 AT3G18960 29.091 165 99 4 286 442 26 180 1.36e-11 63.9
MsG0180000210.01.T01 AT3G18960 29.091 165 99 4 286 442 26 180 1.60e-11 64.3
MsG0180000210.01.T01 AT4G01580 36.190 105 62 2 286 390 26 125 1.64e-11 63.9
MsG0180000210.01.T01 AT3G18960 39.759 83 49 1 308 390 7 88 3.05e-11 62.4
MsG0180000210.01.T01 AT1G49475 36.364 99 59 2 286 384 29 123 5.27e-11 62.4

Find 90 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTCCACTAGGACCTTTA+AGG 0.178570 1:+2918558 None:intergenic
CGTGATAATGACATCAATTT+TGG 0.202243 1:-2921872 MsG0180000210.01.T01:CDS
GTGATGCAAGTTCGTATATC+TGG 0.208858 1:-2921815 MsG0180000210.01.T01:CDS
CCAGAAAATGTGACCCTTAA+AGG 0.236805 1:-2918572 MsG0180000210.01.T01:CDS
GAAGGTCTTGATCATCAAAA+TGG 0.258424 1:-2921782 MsG0180000210.01.T01:CDS
TCCCAAGAATTAGCTTCTTT+TGG 0.277832 1:+2918077 None:intergenic
AGTGGAGTTGTGTGGAATAT+AGG 0.300231 1:-2918545 MsG0180000210.01.T01:CDS
CACCAAAAGAAGCTAATTCT+TGG 0.330626 1:-2918079 MsG0180000210.01.T01:CDS
ACTTCTATAACAGGCTTCTC+AGG 0.332466 1:+2918134 None:intergenic
CTTGCATGCAATCTAGTTCT+AGG 0.336549 1:+2922964 None:intergenic
GGCTGAAAAGAAAGTGAAAA+AGG 0.340408 1:-2918850 MsG0180000210.01.T01:CDS
GTGCTTCGCCTGAGAAATTT+CGG 0.346528 1:-2918244 MsG0180000210.01.T01:CDS
TTCTTGCTCGCTTATTAGTC+TGG 0.350678 1:+2918102 None:intergenic
ATGTTTCTTCGGCATAAATC+TGG 0.355077 1:+2922738 None:intergenic
GCATAAATCTGGAAGTCTTA+TGG 0.355261 1:+2922749 None:intergenic
ATAATCTTTATCTTGCAGTT+TGG 0.369783 1:+2923030 None:intergenic
GTTGTTTCCCCTTGAACATA+TGG 0.370462 1:+2921932 None:intergenic
ATCAATGAGGTTGGAAAAGA+TGG 0.373789 1:-2922835 MsG0180000210.01.T01:CDS
GTTTCAAAAGTTAGAGCTAA+AGG 0.409398 1:+2918200 None:intergenic
TACAGACATCTCCAATCTTT+AGG 0.410316 1:+2922896 None:intergenic
GTGGAGTTGTGTGGAATATA+GGG 0.421556 1:-2918544 MsG0180000210.01.T01:CDS
CGAAGTATTTGAAGCTCTAC+CGG 0.428217 1:+2922618 None:intergenic
GAAGAAGTCAATACTCCTAA+TGG 0.432859 1:-2918281 MsG0180000210.01.T01:CDS
CAATGGTGAATCACTCTTTG+AGG 0.437853 1:-2918423 MsG0180000210.01.T01:CDS
TGATCCTTCGAAAATTCATA+TGG 0.444278 1:+2923057 None:intergenic
ACAGGCGTAACTTCTATAAC+AGG 0.455079 1:+2918125 None:intergenic
CATTCAACAACACCACCATT+AGG 0.459004 1:+2918266 None:intergenic
TGATGCAAGTTCGTATATCT+GGG 0.468535 1:-2921814 MsG0180000210.01.T01:CDS
ACCAAAAGAAGCTAATTCTT+GGG 0.475425 1:-2918078 MsG0180000210.01.T01:CDS
AACTCCACTAGGACCTTTAA+GGG 0.479312 1:+2918559 None:intergenic
GGCGCTTCCTAAAACATTCT+CGG 0.481907 1:-2918615 MsG0180000210.01.T01:CDS
TTGTTTCCCCTTGAACATAT+GGG 0.482916 1:+2921933 None:intergenic
TCCTCCGAGTTAAAGAAATC+CGG 0.486765 1:-2922637 MsG0180000210.01.T01:CDS
CGTGTTCGCATCAATGAGGT+TGG 0.490884 1:-2922844 MsG0180000210.01.T01:CDS
AAGGTCTTGATCATCAAAAT+GGG 0.492524 1:-2921781 MsG0180000210.01.T01:CDS
TCAAGACTCCGAAATTTCTC+AGG 0.493968 1:+2918236 None:intergenic
GGAGATGTGCAGTAGAGAAC+TGG 0.495082 1:+2922020 None:intergenic
TTCCTTGTCTTTAAGTACAA+TGG 0.496096 1:-2918440 MsG0180000210.01.T01:CDS
TAGTATGCTTAGTGCAAGAC+AGG 0.498724 1:-2922782 MsG0180000210.01.T01:CDS
AAAAGATGGGTTAGACTCCC+AGG 0.502465 1:-2922821 MsG0180000210.01.T01:CDS
TCAAATACTTCGAAGAAGGC+AGG 0.504134 1:-2922607 MsG0180000210.01.T01:CDS
GATTATTCTTCATAATTTGA+AGG 0.504582 1:-2923013 MsG0180000210.01.T01:CDS
CGTGGCAATAGCCTAAAGAT+TGG 0.505082 1:-2922907 MsG0180000210.01.T01:CDS
AACTCCGTCCCATATGTTCA+AGG 0.509291 1:-2921941 MsG0180000210.01.T01:CDS
ATTATTCTTCATAATTTGAA+GGG 0.512712 1:-2923012 MsG0180000210.01.T01:CDS
GCTCGCTTATTAGTCTGGAC+AGG 0.522128 1:+2918107 None:intergenic
CTGTTTACTTCGTGGATGGT+TGG 0.523205 1:-2918502 MsG0180000210.01.T01:CDS
GTAACTTCTGTATTGCAAGC+AGG 0.534058 1:+2921998 None:intergenic
CAAGTTCGTATATCTGGGGT+TGG 0.550226 1:-2921809 MsG0180000210.01.T01:CDS
AGGAGTATTGACTTCTTCAA+CGG 0.550848 1:+2918286 None:intergenic
AGTTCTAGGAACAGAATTGA+CGG 0.553971 1:+2922978 None:intergenic
CACCATTGTACTTAAAGACA+AGG 0.554483 1:+2918438 None:intergenic
AGCTTCAAATACTTCGAAGA+AGG 0.556522 1:-2922611 MsG0180000210.01.T01:CDS
CAAAATTAGAAACTTCAACA+TGG 0.559223 1:+2918881 None:intergenic
CTTCTATAACAGGCTTCTCA+GGG 0.559699 1:+2918135 None:intergenic
AGGTGACACTGTTTACTTCG+TGG 0.560497 1:-2918510 MsG0180000210.01.T01:CDS
AATATAGGGCTGAATACTAC+AGG 0.561475 1:-2918530 MsG0180000210.01.T01:CDS
TCGTATATCTGGGGTTGGAA+AGG 0.561748 1:-2921804 MsG0180000210.01.T01:CDS
ATATCTGGGGTTGGAAAGGA+AGG 0.562175 1:-2921800 MsG0180000210.01.T01:CDS
AAAATTAGAAACTTCAACAT+GGG 0.567242 1:+2918882 None:intergenic
GTTACGCTTCGCAATTCAAG+AGG 0.575759 1:-2921980 MsG0180000210.01.T01:CDS
ACTAAACAAGCGGGTAACAA+AGG 0.576423 1:-2918326 MsG0180000210.01.T01:CDS
GACACTGTTTACTTCGTGGA+TGG 0.576504 1:-2918506 MsG0180000210.01.T01:CDS
ATATTCCACACAACTCCACT+AGG 0.578077 1:+2918548 None:intergenic
CAAATACTTCGAAGAAGGCA+GGG 0.582811 1:-2922606 MsG0180000210.01.T01:CDS
GTCACATTCTATGCGGAGGA+TGG 0.588116 1:-2922942 MsG0180000210.01.T01:CDS
CTCCGTCCCATATGTTCAAG+GGG 0.588313 1:-2921939 MsG0180000210.01.T01:CDS
TAACTTCTGTATTGCAAGCA+GGG 0.589388 1:+2921999 None:intergenic
TGTGCAGTAGAGAACTGGCA+TGG 0.592258 1:+2922025 None:intergenic
GATGTCATTATCACGAACAA+AGG 0.594099 1:+2921880 None:intergenic
GATGGGTTAGACTCCCAGGT+TGG 0.599922 1:-2922817 MsG0180000210.01.T01:CDS
GCAATTCAAGAGGCAAACGT+TGG 0.600695 1:-2921970 MsG0180000210.01.T01:CDS
TTCCCCTTGAACATATGGGA+CGG 0.601024 1:+2921937 None:intergenic
ACCGGATTTCTTTAACTCGG+AGG 0.613173 1:+2922636 None:intergenic
TCTACCGGATTTCTTTAACT+CGG 0.613816 1:+2922633 None:intergenic
ACTCCGTCCCATATGTTCAA+GGG 0.617467 1:-2921940 MsG0180000210.01.T01:CDS
CAAGCTCATACTAAACAAGC+GGG 0.619184 1:-2918335 MsG0180000210.01.T01:CDS
AAGGTCCTAGTGGAGTTGTG+TGG 0.624686 1:-2918553 MsG0180000210.01.T01:CDS
GTGACCCTTAAAGGTCCTAG+TGG 0.630968 1:-2918563 MsG0180000210.01.T01:CDS
ATTACGTGTTCGCATCAATG+AGG 0.634490 1:-2922848 MsG0180000210.01.T01:CDS
TCAATGAGGTTGGAAAAGAT+GGG 0.644296 1:-2922834 MsG0180000210.01.T01:CDS
GAAGTCAATACTCCTAATGG+TGG 0.647991 1:-2918278 MsG0180000210.01.T01:CDS
GCAAGTCACATTCTATGCGG+AGG 0.649025 1:-2922946 MsG0180000210.01.T01:CDS
ATAATTTGAAGGGAGAACAG+TGG 0.652096 1:-2923002 MsG0180000210.01.T01:CDS
ACAAGCTCATACTAAACAAG+CGG 0.652222 1:-2918336 MsG0180000210.01.T01:CDS
GTGCAGTAGAGAACTGGCAT+GGG 0.660376 1:+2922026 None:intergenic
TTCTATAACAGGCTTCTCAG+GGG 0.700208 1:+2918136 None:intergenic
CATGCAAGTCACATTCTATG+CGG 0.736069 1:-2922949 MsG0180000210.01.T01:CDS
AATCAGCTCAAAGTGCAGTG+CGG 0.745608 1:-2922713 MsG0180000210.01.T01:CDS
GATGCAAGTTCGTATATCTG+GGG 0.759019 1:-2921813 MsG0180000210.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGATAAAAAAATTCAAAA+AGG + Chr1:2922180-2922199 None:intergenic 10.0%
!! AAATAAGAAAAAATTGAAAA+AGG + Chr1:2921848-2921867 None:intergenic 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + Chr1:2920774-2920793 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + Chr1:2920775-2920794 None:intergenic 10.0%
!!! TTTTTTAATAAATAGTTTAG+TGG - Chr1:2921250-2921269 MsG0180000210.01.T01:intron 10.0%
!! AGAAAAATGTATAAATAAAG+GGG + Chr1:2920773-2920792 None:intergenic 15.0%
!! AGTATTAATTAGAGTTATAT+TGG + Chr1:2920715-2920734 None:intergenic 15.0%
!! ATAAAAAAATTCAAAAAGGT+GGG + Chr1:2922176-2922195 None:intergenic 15.0%
!! ATTATTCTTCATAATTTGAA+GGG - Chr1:2918139-2918158 MsG0180000210.01.T01:CDS 15.0%
!! TAATCCTATTTATTAATAGA+TGG - Chr1:2920038-2920057 MsG0180000210.01.T01:intron 15.0%
!!! ATATGCTTGTTTTTAAATAA+TGG - Chr1:2921975-2921994 MsG0180000210.01.T01:CDS 15.0%
!!! ATTATTGGTTATATAGTTTA+GGG - Chr1:2921944-2921963 MsG0180000210.01.T01:CDS 15.0%
!!! ATTGATTTCAATGATAAAAT+TGG + Chr1:2921321-2921340 None:intergenic 15.0%
!!! GAAGAATATAATTCAATTTT+CGG - Chr1:2918721-2918740 MsG0180000210.01.T01:intron 15.0%
!!! TAGTTCATTTTAATAGTTTA+GGG - Chr1:2922103-2922122 MsG0180000210.01.T01:intron 15.0%
!!! TATTTTTCCTAATATTTAGT+AGG + Chr1:2920886-2920905 None:intergenic 15.0%
!!! TTAGTTCATTTTAATAGTTT+AGG - Chr1:2922102-2922121 MsG0180000210.01.T01:intron 15.0%
!!! TTTTTTTTTGTTTTTGACAT+TGG - Chr1:2919787-2919806 MsG0180000210.01.T01:intron 15.0%
!! AAAAAAAAACATTGTGTTTG+AGG + Chr1:2921234-2921253 None:intergenic 20.0%
!! AAAAACTCATGAATAAATGA+GGG - Chr1:2921275-2921294 MsG0180000210.01.T01:intron 20.0%
!! AAAAGGATAGAGAATTTAAA+AGG + Chr1:2921883-2921902 None:intergenic 20.0%
!! AAAATTAGAAACTTCAACAT+GGG + Chr1:2922272-2922291 None:intergenic 20.0%
!! AAAGTGGAATATATTGAATT+GGG + Chr1:2920750-2920769 None:intergenic 20.0%
!! AATAAAAATTACCATCTACT+GGG + Chr1:2918629-2918648 None:intergenic 20.0%
!! AATTAGAGTTATATTGGATT+GGG + Chr1:2920709-2920728 None:intergenic 20.0%
!! ACAAAAATATTACGGAAAAA+AGG - Chr1:2919951-2919970 MsG0180000210.01.T01:intron 20.0%
!! ACAACCATCTATTAATAAAT+AGG + Chr1:2920045-2920064 None:intergenic 20.0%
!! AGGTTTCTACAAAAATATTA+CGG - Chr1:2919943-2919962 MsG0180000210.01.T01:intron 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG + Chr1:2920677-2920696 None:intergenic 20.0%
!! CAAAAATATTACGGAAAAAA+GGG - Chr1:2919952-2919971 MsG0180000210.01.T01:intron 20.0%
!! GAAAGTTATAAATTTATTGC+AGG - Chr1:2922515-2922534 MsG0180000210.01.T01:intron 20.0%
!! GATAAAAAAATTCAAAAAGG+TGG + Chr1:2922177-2922196 None:intergenic 20.0%
!! GATTATTCTTCATAATTTGA+AGG - Chr1:2918138-2918157 MsG0180000210.01.T01:CDS 20.0%
!! TAAAAACTCATGAATAAATG+AGG - Chr1:2921274-2921293 MsG0180000210.01.T01:intron 20.0%
!! TAATTAGAGTTATATTGGAT+TGG + Chr1:2920710-2920729 None:intergenic 20.0%
!! TTTATCAATTTCAACTGAAA+AGG + Chr1:2920579-2920598 None:intergenic 20.0%
!! TTTCAATCAGATAAACTATA+TGG + Chr1:2920462-2920481 None:intergenic 20.0%
!!! ATGATTTTCTTAATTTTCAG+TGG + Chr1:2921185-2921204 None:intergenic 20.0%
!!! ATTGAAAAAGGTTGAATTTT+TGG + Chr1:2921836-2921855 None:intergenic 20.0%
!!! ATTTTCACAAAATAGGAAAT+GGG + Chr1:2918985-2919004 None:intergenic 20.0%
!!! GACAAAATCAATTTTATTCT+CGG + Chr1:2921538-2921557 None:intergenic 20.0%
!!! GACACTTTTTTTTAGTAAAT+GGG + Chr1:2920640-2920659 None:intergenic 20.0%
!!! GATTATTGGTTATATAGTTT+AGG - Chr1:2921943-2921962 MsG0180000210.01.T01:CDS 20.0%
!!! GTTTCTAATTTTGATTTTTG+TGG - Chr1:2922280-2922299 MsG0180000210.01.T01:intron 20.0%
!!! TCTTTGTTTACAGTTAAAAT+GGG + Chr1:2918850-2918869 None:intergenic 20.0%
!!! TGATTTTCTTAATTTTCAGT+GGG + Chr1:2921184-2921203 None:intergenic 20.0%
!!! TTTGAGGTTTTAATCTTTAA+TGG - Chr1:2922744-2922763 MsG0180000210.01.T01:CDS 20.0%
!!! TTTTTTGAGGAAAACAATTT+GGG - Chr1:2921118-2921137 MsG0180000210.01.T01:intron 20.0%
!!! TTTTTTTGAGGAAAACAATT+TGG - Chr1:2921117-2921136 MsG0180000210.01.T01:intron 20.0%
! AAAAAGACATCTAATTTGAG+AGG + Chr1:2921418-2921437 None:intergenic 25.0%
! AAAACTCATGAATAAATGAG+GGG - Chr1:2921276-2921295 MsG0180000210.01.T01:intron 25.0%
! AACACAAAATAGCAAATCAT+GGG - Chr1:2921698-2921717 MsG0180000210.01.T01:intron 25.0%
! AATAGATGGTTGTTTGATAA+TGG - Chr1:2920052-2920071 MsG0180000210.01.T01:intron 25.0%
! ACAAACAGATGTTACAAATT+TGG + Chr1:2920283-2920302 None:intergenic 25.0%
! ACCTTAAACGATTGTTAATT+TGG + Chr1:2919927-2919946 None:intergenic 25.0%
! AGTATTCAACATTTATCCTT+TGG + Chr1:2918787-2918806 None:intergenic 25.0%
! AGTTTATCTGATTGAAACAT+CGG - Chr1:2920465-2920484 MsG0180000210.01.T01:intron 25.0%
! ATAATCTTTATCTTGCAGTT+TGG + Chr1:2918124-2918143 None:intergenic 25.0%
! CAAAATTAGAAACTTCAACA+TGG + Chr1:2922273-2922292 None:intergenic 25.0%
! CAAATAAAATGCAGTTACAA+AGG - Chr1:2921557-2921576 MsG0180000210.01.T01:intron 25.0%
! CAATAAAAATTACCATCTAC+TGG + Chr1:2918630-2918649 None:intergenic 25.0%
! GAAAGTGGAATATATTGAAT+TGG + Chr1:2920751-2920770 None:intergenic 25.0%
! GATAGAATATTTGTTTGTCT+TGG + Chr1:2919900-2919919 None:intergenic 25.0%
! GTATTCAACATTTATCCTTT+GGG + Chr1:2918786-2918805 None:intergenic 25.0%
! GTCATTACCTACTAAATATT+AGG - Chr1:2920876-2920895 MsG0180000210.01.T01:intron 25.0%
! TCCAAATTAACAATCGTTTA+AGG - Chr1:2919923-2919942 MsG0180000210.01.T01:intron 25.0%
! TGATGAAAAAGTGATAGTAT+AGG - Chr1:2922133-2922152 MsG0180000210.01.T01:intron 25.0%
! TGTTAAAGAATGATGCTATA+AGG - Chr1:2920300-2920319 MsG0180000210.01.T01:intron 25.0%
! TTGTCAAAACAAAAAGTGAT+GGG - Chr1:2921666-2921685 MsG0180000210.01.T01:intron 25.0%
!! AATGGAAATACTTTTAATGC+TGG - Chr1:2922978-2922997 MsG0180000210.01.T01:CDS 25.0%
!! AGTCGTTTAAAGTTTATGTA+CGG + Chr1:2921367-2921386 None:intergenic 25.0%
!! CTTCATGATTTTCACAAAAT+AGG + Chr1:2918992-2919011 None:intergenic 25.0%
!! GATTTTCACAAAATAGGAAA+TGG + Chr1:2918986-2919005 None:intergenic 25.0%
!! GTATTTTCGTCTAAAGAAAT+AGG + Chr1:2920546-2920565 None:intergenic 25.0%
!! GTCTTTGTTTACAGTTAAAA+TGG + Chr1:2918851-2918870 None:intergenic 25.0%
!! TACAAGTTGTTGTTGAAAAT+CGG + Chr1:2921784-2921803 None:intergenic 25.0%
!! TATTCCATATGAATTTTCGA+AGG - Chr1:2918090-2918109 MsG0180000210.01.T01:CDS 25.0%
!! TTTTCACAAAATAGGAAATG+GGG + Chr1:2918984-2919003 None:intergenic 25.0%
!!! AATGTTGAGCTTTTGATTAT+TGG - Chr1:2921929-2921948 MsG0180000210.01.T01:CDS 25.0%
!!! CTAACTTTTGAAACTACTAA+TGG - Chr1:2922960-2922979 MsG0180000210.01.T01:CDS 25.0%
!!! CTATCACTTTTTCATCAATT+TGG + Chr1:2922130-2922149 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGTAAA+TGG + Chr1:2920641-2920660 None:intergenic 25.0%
!!! GGCGTTTTTTTTTTTTTTTG+AGG - Chr1:2921105-2921124 MsG0180000210.01.T01:intron 25.0%
!!! TCTTATTTTGTTCTAGAATG+TGG - Chr1:2922792-2922811 MsG0180000210.01.T01:CDS 25.0%
!!! TGGAAGGTAGAAATTTTTTA+AGG + Chr1:2918812-2918831 None:intergenic 25.0%
AAAGCAATGGTTGAAATACA+AGG - Chr1:2920928-2920947 MsG0180000210.01.T01:intron 30.0%
AAGCAATGGTTGAAATACAA+GGG - Chr1:2920929-2920948 MsG0180000210.01.T01:intron 30.0%
AAGGTCTTGATCATCAAAAT+GGG - Chr1:2919370-2919389 MsG0180000210.01.T01:intron 30.0%
ACCAAAAGAAGCTAATTCTT+GGG - Chr1:2923073-2923092 MsG0180000210.01.T01:CDS 30.0%
ACCAAATTCGTAATACAAGT+TGG - Chr1:2920161-2920180 MsG0180000210.01.T01:intron 30.0%
AGCAACGTTCAAAAACAATT+TGG - Chr1:2921083-2921102 MsG0180000210.01.T01:intron 30.0%
AGGATAGAGAATTTAAAAGG+TGG + Chr1:2921880-2921899 None:intergenic 30.0%
CAACTGAAAAGGATACTAAA+AGG + Chr1:2920568-2920587 None:intergenic 30.0%
CAATGAAGATGTATATGTTG+TGG - Chr1:2919470-2919489 MsG0180000210.01.T01:intron 30.0%
CAATGTTTCTTACTCTTAAC+TGG - Chr1:2922493-2922512 MsG0180000210.01.T01:intron 30.0%
CTTGTCAAAACAAAAAGTGA+TGG - Chr1:2921665-2921684 MsG0180000210.01.T01:intron 30.0%
GAAATGGATGAACTGAAAAT+GGG + Chr1:2921742-2921761 None:intergenic 30.0%
GAACACAAAATAGCAAATCA+TGG - Chr1:2921697-2921716 MsG0180000210.01.T01:intron 30.0%
GCAACGTTCAAAAACAATTT+GGG - Chr1:2921084-2921103 MsG0180000210.01.T01:intron 30.0%
GCAGTTAAAGGAAATGTAAA+AGG + Chr1:2921900-2921919 None:intergenic 30.0%
GGATAGAGAATTTAAAAGGT+GGG + Chr1:2921879-2921898 None:intergenic 30.0%
GTTTCAAAAGTTAGAGCTAA+AGG + Chr1:2922954-2922973 None:intergenic 30.0%
TAGCATCATAAGGAAATGTA+GGG + Chr1:2920260-2920279 None:intergenic 30.0%
TCAGATAAACTATATGGATG+CGG + Chr1:2920456-2920475 None:intergenic 30.0%
TCCAACTTGTATTACGAATT+TGG + Chr1:2920165-2920184 None:intergenic 30.0%
TGAAATGGATGAACTGAAAA+TGG + Chr1:2921743-2921762 None:intergenic 30.0%
TGATCCTTCGAAAATTCATA+TGG + Chr1:2918097-2918116 None:intergenic 30.0%
TGTATAAATAAAGGGGAAAG+TGG + Chr1:2920766-2920785 None:intergenic 30.0%
TTCCTTGTCTTTAAGTACAA+TGG - Chr1:2922711-2922730 MsG0180000210.01.T01:CDS 30.0%
TTGGATAGGAGAATAGTTTA+GGG - Chr1:2922074-2922093 MsG0180000210.01.T01:intron 30.0%
! AAATTGTCCGAGAATGTTTT+AGG + Chr1:2922546-2922565 None:intergenic 30.0%
! ACAAATTTGGTAGCATCATA+AGG + Chr1:2920270-2920289 None:intergenic 30.0%
! ATTTTCTTCAGTGCAGTTAA+AGG + Chr1:2921912-2921931 None:intergenic 30.0%
! CACTCAATTTTGTTAACTGA+GGG - Chr1:2922038-2922057 MsG0180000210.01.T01:intron 30.0%
! GTCTGTATTTTCGAACTTAT+AGG - Chr1:2918271-2918290 MsG0180000210.01.T01:CDS 30.0%
! TGCTATTTGGATCTAGTAAA+AGG - Chr1:2921050-2921069 MsG0180000210.01.T01:intron 30.0%
! TTATCTAGACATTTTCTCGA+TGG + Chr1:2920404-2920423 None:intergenic 30.0%
! TTGAAATGGCTCAGTTATTT+TGG + Chr1:2920663-2920682 None:intergenic 30.0%
! TTGATGCATTTTATGCATGT+CGG - Chr1:2919510-2919529 MsG0180000210.01.T01:intron 30.0%
! TTTCAAACTATCATTAGCCT+GGG + Chr1:2918915-2918934 None:intergenic 30.0%
! TTTTCAAACTATCATTAGCC+TGG + Chr1:2918916-2918935 None:intergenic 30.0%
! TTTTCCATAACCTTAAACGA+CGG + Chr1:2919690-2919709 None:intergenic 30.0%
!! ACAACTATTCACACTTTTTG+TGG - Chr1:2919237-2919256 MsG0180000210.01.T01:intron 30.0%
!! CGTGATAATGACATCAATTT+TGG - Chr1:2919279-2919298 MsG0180000210.01.T01:intron 30.0%
!! GAGCTGATTTTATGTTTCTT+CGG + Chr1:2918427-2918446 None:intergenic 30.0%
!! TGAAATGGCTCAGTTATTTT+GGG + Chr1:2920662-2920681 None:intergenic 30.0%
!!! AAGTTTTGAGCTTTTGGTTA+TGG - Chr1:2922243-2922262 MsG0180000210.01.T01:intron 30.0%
!!! TGAAGAAAGTTTTGAGCTTT+TGG - Chr1:2922237-2922256 MsG0180000210.01.T01:intron 30.0%
AAAAGAACAAGCTGCAGTTA+AGG + Chr1:2922218-2922237 None:intergenic 35.0%
AAAAGCTGCCCATAAAAAGT+CGG - Chr1:2918582-2918601 MsG0180000210.01.T01:CDS 35.0%
AATATAGGGCTGAATACTAC+AGG - Chr1:2922621-2922640 MsG0180000210.01.T01:CDS 35.0%
ACAAAATAGCAAATCATGGG+AGG - Chr1:2921701-2921720 MsG0180000210.01.T01:intron 35.0%
ACAAGCTCATACTAAACAAG+CGG - Chr1:2922815-2922834 MsG0180000210.01.T01:CDS 35.0%
AGAAGCTAATTCTTGGGAAT+AGG - Chr1:2923079-2923098 MsG0180000210.01.T01:CDS 35.0%
AGCTTCAAATACTTCGAAGA+AGG - Chr1:2918540-2918559 MsG0180000210.01.T01:CDS 35.0%
AGGGCAATTTAACCCTTAAT+TGG - Chr1:2920948-2920967 MsG0180000210.01.T01:intron 35.0%
AGTAAATGGGTCAGATATTC+CGG + Chr1:2920627-2920646 None:intergenic 35.0%
ATAATTTGAAGGGAGAACAG+TGG - Chr1:2918149-2918168 MsG0180000210.01.T01:CDS 35.0%
ATCAATGAGGTTGGAAAAGA+TGG - Chr1:2918316-2918335 MsG0180000210.01.T01:CDS 35.0%
ATCTGTGTGAAAAACCAAAC+TGG - Chr1:2920795-2920814 MsG0180000210.01.T01:intron 35.0%
ATGAAGAAGTTCAATGTCTG+TGG - Chr1:2919006-2919025 MsG0180000210.01.T01:intron 35.0%
ATGCAGTTACAAAGGCTTAA+AGG - Chr1:2921565-2921584 MsG0180000210.01.T01:intron 35.0%
ATGGGACTGAAGTCATAATT+TGG + Chr1:2918832-2918851 None:intergenic 35.0%
ATGTTTCTTCGGCATAAATC+TGG + Chr1:2918416-2918435 None:intergenic 35.0%
CACCAAAAGAAGCTAATTCT+TGG - Chr1:2923072-2923091 MsG0180000210.01.T01:CDS 35.0%
CACCATTGTACTTAAAGACA+AGG + Chr1:2922716-2922735 None:intergenic 35.0%
CCTCAGTTAACAAAATTGAG+TGG + Chr1:2922040-2922059 None:intergenic 35.0%
CTCATAATAACCGTCGTTTA+AGG - Chr1:2919677-2919696 MsG0180000210.01.T01:intron 35.0%
CTGAAGAATCTAAGAGATGA+TGG + Chr1:2922471-2922490 None:intergenic 35.0%
GAAGAAGTCAATACTCCTAA+TGG - Chr1:2922870-2922889 MsG0180000210.01.T01:CDS 35.0%
GAAGGTCTTGATCATCAAAA+TGG - Chr1:2919369-2919388 MsG0180000210.01.T01:intron 35.0%
GACTGAAGTCATAATTTGGA+AGG + Chr1:2918828-2918847 None:intergenic 35.0%
GATGTCATTATCACGAACAA+AGG + Chr1:2919274-2919293 None:intergenic 35.0%
GCATAAATCTGGAAGTCTTA+TGG + Chr1:2918405-2918424 None:intergenic 35.0%
GGCTGAAAAGAAAGTGAAAA+AGG - Chr1:2922301-2922320 MsG0180000210.01.T01:intron 35.0%
GTAGCATCATAAGGAAATGT+AGG + Chr1:2920261-2920280 None:intergenic 35.0%
GTTGGATAGGAGAATAGTTT+AGG - Chr1:2922073-2922092 MsG0180000210.01.T01:intron 35.0%
TAACTTCTGTATTGCAAGCA+GGG + Chr1:2919155-2919174 None:intergenic 35.0%
TACAGACATCTCCAATCTTT+AGG + Chr1:2918258-2918277 None:intergenic 35.0%
TAGTGAAAGAAAGAACCCAA+AGG - Chr1:2918768-2918787 MsG0180000210.01.T01:intron 35.0%
TCAATGAGGTTGGAAAAGAT+GGG - Chr1:2918317-2918336 MsG0180000210.01.T01:CDS 35.0%
TCTACCGGATTTCTTTAACT+CGG + Chr1:2918521-2918540 None:intergenic 35.0%
TGATGCAAGTTCGTATATCT+GGG - Chr1:2919337-2919356 MsG0180000210.01.T01:intron 35.0%
TGCAGTTACAAAGGCTTAAA+GGG - Chr1:2921566-2921585 MsG0180000210.01.T01:intron 35.0%
TTAACCCTTAATTGGAGTCA+AGG - Chr1:2920956-2920975 MsG0180000210.01.T01:intron 35.0%
TTCACGAGGAAGAACATAAA+TGG + Chr1:2921597-2921616 None:intergenic 35.0%
TTGTTTCCCCTTGAACATAT+GGG + Chr1:2919221-2919240 None:intergenic 35.0%
! AAACAAAAAGTGATGGGAGA+AGG - Chr1:2921672-2921691 MsG0180000210.01.T01:intron 35.0%
! AAACCATACCCGACTTTTTA+TGG + Chr1:2918594-2918613 None:intergenic 35.0%
! AACCATACCCGACTTTTTAT+GGG + Chr1:2918593-2918612 None:intergenic 35.0%
! AAGTTGTTGTTGAAAATCGG+TGG + Chr1:2921781-2921800 None:intergenic 35.0%
! ATAACCGTCGTTTAAGGTTA+TGG - Chr1:2919683-2919702 MsG0180000210.01.T01:intron 35.0%
! CAATTTTGTTAACTGAGGGA+GGG - Chr1:2922042-2922061 MsG0180000210.01.T01:intron 35.0%
! CCACTCAATTTTGTTAACTG+AGG - Chr1:2922037-2922056 MsG0180000210.01.T01:intron 35.0%
! TCAATTTTGTTAACTGAGGG+AGG - Chr1:2922041-2922060 MsG0180000210.01.T01:intron 35.0%
!! ACTATTCACACTTTTTGTGG+CGG - Chr1:2919240-2919259 MsG0180000210.01.T01:intron 35.0%
!! AGGAGTATTGACTTCTTCAA+CGG + Chr1:2922868-2922887 None:intergenic 35.0%
!! AGTTCTAGGAACAGAATTGA+CGG + Chr1:2918176-2918195 None:intergenic 35.0%
!! CTTTGAAACGGTTAAGTACA+TGG + Chr1:2920329-2920348 None:intergenic 35.0%
!! TCCCAAGAATTAGCTTCTTT+TGG + Chr1:2923077-2923096 None:intergenic 35.0%
AAAGCTGCCCATAAAAAGTC+GGG - Chr1:2918583-2918602 MsG0180000210.01.T01:CDS 40.0%
AACTCCACTAGGACCTTTAA+GGG + Chr1:2922595-2922614 None:intergenic 40.0%
ACAGGCGTAACTTCTATAAC+AGG + Chr1:2923029-2923048 None:intergenic 40.0%
ACCTCCTTGACTCCAATTAA+GGG + Chr1:2920963-2920982 None:intergenic 40.0%
ACTAAACAAGCGGGTAACAA+AGG - Chr1:2922825-2922844 MsG0180000210.01.T01:CDS 40.0%
ACTTCTATAACAGGCTTCTC+AGG + Chr1:2923020-2923039 None:intergenic 40.0%
AGACGTTAGTCACAAAGCAA+TGG - Chr1:2920915-2920934 MsG0180000210.01.T01:intron 40.0%
AGCTTAGTCCATCATCAACA+TGG + Chr1:2918892-2918911 None:intergenic 40.0%
AGTGGAGTTGTGTGGAATAT+AGG - Chr1:2922606-2922625 MsG0180000210.01.T01:CDS 40.0%
AGTTACAAAGGCTTAAAGGG+AGG - Chr1:2921569-2921588 MsG0180000210.01.T01:intron 40.0%
ATATTCCACACAACTCCACT+AGG + Chr1:2922606-2922625 None:intergenic 40.0%
ATTACGTGTTCGCATCAATG+AGG - Chr1:2918303-2918322 MsG0180000210.01.T01:CDS 40.0%
CAAATACTTCGAAGAAGGCA+GGG - Chr1:2918545-2918564 MsG0180000210.01.T01:CDS 40.0%
CAAGAGAACGACACAAACAA+AGG + Chr1:2921649-2921668 None:intergenic 40.0%
CAAGCTCATACTAAACAAGC+GGG - Chr1:2922816-2922835 MsG0180000210.01.T01:CDS 40.0%
CAATGGTGAATCACTCTTTG+AGG - Chr1:2922728-2922747 MsG0180000210.01.T01:CDS 40.0%
CATGCAAGTCACATTCTATG+CGG - Chr1:2918202-2918221 MsG0180000210.01.T01:CDS 40.0%
CATGGGAGGAAGAGATTTAT+TGG - Chr1:2921715-2921734 MsG0180000210.01.T01:intron 40.0%
CATTCAACAACACCACCATT+AGG + Chr1:2922888-2922907 None:intergenic 40.0%
CCAGAAAATGTGACCCTTAA+AGG - Chr1:2922579-2922598 MsG0180000210.01.T01:CDS 40.0%
CGTTGTCTATAACATCCAGT+AGG - Chr1:2919604-2919623 MsG0180000210.01.T01:intron 40.0%
CTCATGAATAAATGAGGGGA+TGG - Chr1:2921280-2921299 MsG0180000210.01.T01:intron 40.0%
CTTCTATAACAGGCTTCTCA+GGG + Chr1:2923019-2923038 None:intergenic 40.0%
GAAGTCAATACTCCTAATGG+TGG - Chr1:2922873-2922892 MsG0180000210.01.T01:CDS 40.0%
GATGCAAGTTCGTATATCTG+GGG - Chr1:2919338-2919357 MsG0180000210.01.T01:intron 40.0%
GTAAATGGGTCAGATATTCC+GGG + Chr1:2920626-2920645 None:intergenic 40.0%
GTAACTTCTGTATTGCAAGC+AGG + Chr1:2919156-2919175 None:intergenic 40.0%
GTGATGCAAGTTCGTATATC+TGG - Chr1:2919336-2919355 MsG0180000210.01.T01:intron 40.0%
GTGGAGTTGTGTGGAATATA+GGG - Chr1:2922607-2922626 MsG0180000210.01.T01:CDS 40.0%
TACCTCCTTGACTCCAATTA+AGG + Chr1:2920964-2920983 None:intergenic 40.0%
TAGTATGCTTAGTGCAAGAC+AGG - Chr1:2918369-2918388 MsG0180000210.01.T01:CDS 40.0%
TCAAATACTTCGAAGAAGGC+AGG - Chr1:2918544-2918563 MsG0180000210.01.T01:CDS 40.0%
TCAAGACTCCGAAATTTCTC+AGG + Chr1:2922918-2922937 None:intergenic 40.0%
TCATCAACATGGTGTTTCCT+CGG + Chr1:2918881-2918900 None:intergenic 40.0%
TCCTCCGAGTTAAAGAAATC+CGG - Chr1:2918514-2918533 MsG0180000210.01.T01:CDS 40.0%
TGCTCAGAAAAAGGGTGAAA+TGG + Chr1:2921758-2921777 None:intergenic 40.0%
TGTCTGTGGATCATACACTT+TGG - Chr1:2919020-2919039 MsG0180000210.01.T01:intron 40.0%
TGTGGATCATACACTTTGGT+GGG - Chr1:2919024-2919043 MsG0180000210.01.T01:intron 40.0%
TTCTATAACAGGCTTCTCAG+GGG + Chr1:2923018-2923037 None:intergenic 40.0%
TTCTTGCTCGCTTATTAGTC+TGG + Chr1:2923052-2923071 None:intergenic 40.0%
TTGTGTCTAAGGGACGAAAA+TGG + Chr1:2920432-2920451 None:intergenic 40.0%
TTTCTCACAAACGTGAACGT+TGG + Chr1:2919436-2919455 None:intergenic 40.0%
! ACGACACAAACAAAGGTACA+AGG + Chr1:2921642-2921661 None:intergenic 40.0%
! AGGAAACACCATGTTGATGA+TGG - Chr1:2918881-2918900 MsG0180000210.01.T01:CDS 40.0%
! CGAAGTATTTGAAGCTCTAC+CGG + Chr1:2918536-2918555 None:intergenic 40.0%
! GGATGGTTGAATTTTGTTCG+TGG - Chr1:2918226-2918245 MsG0180000210.01.T01:CDS 40.0%
! GTTGTTTCCCCTTGAACATA+TGG + Chr1:2919222-2919241 None:intergenic 40.0%
!! CCTTTAAGGGTCACATTTTC+TGG + Chr1:2922582-2922601 None:intergenic 40.0%
!! CTTGCATGCAATCTAGTTCT+AGG + Chr1:2918190-2918209 None:intergenic 40.0%
!! TTTATGGGCAGCTTTTGACT+TGG + Chr1:2918578-2918597 None:intergenic 40.0%
!!! ACAAGCTAGTTTTCCAACCT+GGG + Chr1:2918350-2918369 None:intergenic 40.0%
!!! TACAAGCTAGTTTTCCAACC+TGG + Chr1:2918351-2918370 None:intergenic 40.0%
!!! TTATGGGCAGCTTTTGACTT+GGG + Chr1:2918577-2918596 None:intergenic 40.0%
AAACAAAGACAGCTGTACCG+AGG - Chr1:2918861-2918880 MsG0180000210.01.T01:CDS 45.0%
AACTCCGTCCCATATGTTCA+AGG - Chr1:2919210-2919229 MsG0180000210.01.T01:intron 45.0%
AAGTGATAGTATAGGCCCTC+TGG - Chr1:2922141-2922160 MsG0180000210.01.T01:intron 45.0%
AATCAGCTCAAAGTGCAGTG+CGG - Chr1:2918438-2918457 MsG0180000210.01.T01:CDS 45.0%
AATCGGTGGTGCTCAGAAAA+AGG + Chr1:2921767-2921786 None:intergenic 45.0%
ACCATCTACTGGGCAAATAG+AGG + Chr1:2918619-2918638 None:intergenic 45.0%
ACCCTTAATTGGAGTCAAGG+AGG - Chr1:2920959-2920978 MsG0180000210.01.T01:intron 45.0%
ACCGGATTTCTTTAACTCGG+AGG + Chr1:2918518-2918537 None:intergenic 45.0%
ACTCCGTCCCATATGTTCAA+GGG - Chr1:2919211-2919230 MsG0180000210.01.T01:intron 45.0%
ACTTAGCAGTGATCACGAGT+AGG - Chr1:2920848-2920867 MsG0180000210.01.T01:intron 45.0%
AGGTGACACTGTTTACTTCG+TGG - Chr1:2922641-2922660 MsG0180000210.01.T01:CDS 45.0%
ATCGGTGGTGCTCAGAAAAA+GGG + Chr1:2921766-2921785 None:intergenic 45.0%
CAACTCCACTAGGACCTTTA+AGG + Chr1:2922596-2922615 None:intergenic 45.0%
CGTGGCAATAGCCTAAAGAT+TGG - Chr1:2918244-2918263 MsG0180000210.01.T01:CDS 45.0%
CTGTGGATCATACACTTTGG+TGG - Chr1:2919023-2919042 MsG0180000210.01.T01:intron 45.0%
CTGTTTACTTCGTGGATGGT+TGG - Chr1:2922649-2922668 MsG0180000210.01.T01:CDS 45.0%
GAAAAAGGAGATTGTAGCGC+AGG - Chr1:2922316-2922335 MsG0180000210.01.T01:intron 45.0%
GACACTGTTTACTTCGTGGA+TGG - Chr1:2922645-2922664 MsG0180000210.01.T01:CDS 45.0%
GAGTCAAGGAGGTAGAATTC+TGG - Chr1:2920970-2920989 MsG0180000210.01.T01:intron 45.0%
GCAATTCAAGAGGCAAACGT+TGG - Chr1:2919181-2919200 MsG0180000210.01.T01:intron 45.0%
GGCGCTTCCTAAAACATTCT+CGG - Chr1:2922536-2922555 MsG0180000210.01.T01:intron 45.0%
GTGCTTCGCCTGAGAAATTT+CGG - Chr1:2922907-2922926 MsG0180000210.01.T01:CDS 45.0%
GTTACGCTTCGCAATTCAAG+AGG - Chr1:2919171-2919190 MsG0180000210.01.T01:intron 45.0%
TCAACATTTCGCAAGCCTAC+TGG + Chr1:2919622-2919641 None:intergenic 45.0%
TCCAAATAGCACTACACTCG+AGG + Chr1:2921041-2921060 None:intergenic 45.0%
TCCTCTATTTGCCCAGTAGA+TGG - Chr1:2918615-2918634 MsG0180000210.01.T01:CDS 45.0%
TCTAAGGGACGAAAATGGCA+TGG + Chr1:2920427-2920446 None:intergenic 45.0%
TGCCCATAAAAAGTCGGGTA+TGG - Chr1:2918588-2918607 MsG0180000210.01.T01:CDS 45.0%
TTCCCCTTGAACATATGGGA+CGG + Chr1:2919217-2919236 None:intergenic 45.0%
! ACATTTTCTCGATGGCAGCA+AGG + Chr1:2920396-2920415 None:intergenic 45.0%
! ATATCTGGGGTTGGAAAGGA+AGG - Chr1:2919351-2919370 MsG0180000210.01.T01:intron 45.0%
! CAAACTGGCTCAGATATTCC+GGG - Chr1:2920810-2920829 MsG0180000210.01.T01:intron 45.0%
! CAAGTTCGTATATCTGGGGT+TGG - Chr1:2919342-2919361 MsG0180000210.01.T01:intron 45.0%
! CCAAACTGGCTCAGATATTC+CGG - Chr1:2920809-2920828 MsG0180000210.01.T01:intron 45.0%
! GATTGTAGCGCAGGTTTTCA+TGG - Chr1:2922325-2922344 MsG0180000210.01.T01:intron 45.0%
! TCCTCGAGTGTAGTGCTATT+TGG - Chr1:2921037-2921056 MsG0180000210.01.T01:intron 45.0%
! TCGTATATCTGGGGTTGGAA+AGG - Chr1:2919347-2919366 MsG0180000210.01.T01:intron 45.0%
! TTCCTCGTGAAGTGCTATCA+AGG - Chr1:2921606-2921625 MsG0180000210.01.T01:intron 45.0%
!! AAAAGATGGGTTAGACTCCC+AGG - Chr1:2918330-2918349 MsG0180000210.01.T01:CDS 45.0%
!! CACTCATGGAGGCTTTGAAA+CGG + Chr1:2920341-2920360 None:intergenic 45.0%
!! GCGTTTTAACACTCGACTAG+AGG - Chr1:2921140-2921159 MsG0180000210.01.T01:intron 45.0%
!! TTCACACTTTTTGTGGCGGA+TGG - Chr1:2919244-2919263 MsG0180000210.01.T01:intron 45.0%
!!! TATGGGCAGCTTTTGACTTG+GGG + Chr1:2918576-2918595 None:intergenic 45.0%
!!! ATTAATAATATTGATTTTAA+TGG - Chr1:2921467-2921486 MsG0180000210.01.T01:intron 5.0%
AAGGTCCTAGTGGAGTTGTG+TGG - Chr1:2922598-2922617 MsG0180000210.01.T01:CDS 50.0%
AGGTGGGCAATTTAGTCCAG+AGG + Chr1:2922160-2922179 None:intergenic 50.0%
ATGGATGCGGCTTGTGTCTA+AGG + Chr1:2920443-2920462 None:intergenic 50.0%
ATGGGTCAGATATTCCGGGA+CGG + Chr1:2920622-2920641 None:intergenic 50.0%
CACTTCAACATTCCTGCCTG+GGG - Chr1:2920501-2920520 MsG0180000210.01.T01:intron 50.0%
CCGGAATATCTGAGCCAGTT+TGG + Chr1:2920812-2920831 None:intergenic 50.0%
CGTGTTCGCATCAATGAGGT+TGG - Chr1:2918307-2918326 MsG0180000210.01.T01:CDS 50.0%
CGTTTCAAAGCCTCCATGAG+TGG - Chr1:2920339-2920358 MsG0180000210.01.T01:intron 50.0%
CTCCGTCCCATATGTTCAAG+GGG - Chr1:2919212-2919231 MsG0180000210.01.T01:intron 50.0%
GCAAGTCACATTCTATGCGG+AGG - Chr1:2918205-2918224 MsG0180000210.01.T01:CDS 50.0%
GCACTTCAACATTCCTGCCT+GGG - Chr1:2920500-2920519 MsG0180000210.01.T01:intron 50.0%
GGAGATGTGCAGTAGAGAAC+TGG + Chr1:2919134-2919153 None:intergenic 50.0%
GGTGGGCAATTTAGTCCAGA+GGG + Chr1:2922159-2922178 None:intergenic 50.0%
GTCACATTCTATGCGGAGGA+TGG - Chr1:2918209-2918228 MsG0180000210.01.T01:CDS 50.0%
GTGAACGTTGGCAGGTAGAT+GGG + Chr1:2919424-2919443 None:intergenic 50.0%
GTGACCCTTAAAGGTCCTAG+TGG - Chr1:2922588-2922607 MsG0180000210.01.T01:CDS 50.0%
GTGCAGTAGAGAACTGGCAT+GGG + Chr1:2919128-2919147 None:intergenic 50.0%
TCACAAACGTGAACGTTGGC+AGG + Chr1:2919432-2919451 None:intergenic 50.0%
TGGATGCGGCTTGTGTCTAA+GGG + Chr1:2920442-2920461 None:intergenic 50.0%
TGTGCAGTAGAGAACTGGCA+TGG + Chr1:2919129-2919148 None:intergenic 50.0%
! GCTCGCTTATTAGTCTGGAC+AGG + Chr1:2923047-2923066 None:intergenic 50.0%
! TCGTGAAGTGCTATCAAGGC+AGG - Chr1:2921610-2921629 MsG0180000210.01.T01:intron 50.0%
! TGCCTTGATAGCACTTCACG+AGG + Chr1:2921611-2921630 None:intergenic 50.0%
!! TGATGATGGACTAAGCTCCC+AGG - Chr1:2918895-2918914 MsG0180000210.01.T01:CDS 50.0%
!!! ATGGGCAGCTTTTGACTTGG+GGG + Chr1:2918575-2918594 None:intergenic 50.0%
CGCACTTCAACATTCCTGCC+TGG - Chr1:2920499-2920518 MsG0180000210.01.T01:intron 55.0%
CGTGAACGTTGGCAGGTAGA+TGG + Chr1:2919425-2919444 None:intergenic 55.0%
CTCAGATATTCCGGGACGGA+GGG - Chr1:2920818-2920837 MsG0180000210.01.T01:intron 55.0%
CTGGCTCAGATATTCCGGGA+CGG - Chr1:2920814-2920833 MsG0180000210.01.T01:intron 55.0%
GAACTCCACGTTGAAACCCC+AGG + Chr1:2920520-2920539 None:intergenic 55.0%
GTCAGATATTCCGGGACGGA+GGG + Chr1:2920618-2920637 None:intergenic 55.0%
TCTAAGTACTCCCTCCGTCC+CGG - Chr1:2920605-2920624 MsG0180000210.01.T01:intron 55.0%
!! GATGGGTTAGACTCCCAGGT+TGG - Chr1:2918334-2918353 MsG0180000210.01.T01:CDS 55.0%
AGTGTGTACTCCCTCCGTCC+CGG + Chr1:2920831-2920850 None:intergenic 60.0%
CAACGACTGACGCCGAAGCA+CGG + Chr1:2920365-2920384 None:intergenic 60.0%
CTCCATGAGTGGCCGTGCTT+CGG - Chr1:2920350-2920369 MsG0180000210.01.T01:intron 60.0%
GCTCAGATATTCCGGGACGG+AGG - Chr1:2920817-2920836 MsG0180000210.01.T01:intron 60.0%
GCTTCGGCGTCAGTCGTTGT+AGG - Chr1:2920366-2920385 MsG0180000210.01.T01:intron 60.0%
GGTCAGATATTCCGGGACGG+AGG + Chr1:2920619-2920638 None:intergenic 60.0%
TCCACGTTGAAACCCCAGGC+AGG + Chr1:2920516-2920535 None:intergenic 60.0%
TCCTGCCTGGGGTTTCAACG+TGG - Chr1:2920512-2920531 MsG0180000210.01.T01:intron 60.0%
CGAAGCACGGCCACTCATGG+AGG + Chr1:2920352-2920371 None:intergenic 65.0%
CGCCGAAGCACGGCCACTCA+TGG + Chr1:2920355-2920374 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 2918073 2923100 2918073 ID=MsG0180000210.01;Name=MsG0180000210.01
Chr1 mRNA 2918073 2923100 2918073 ID=MsG0180000210.01.T01;Parent=MsG0180000210.01;Name=MsG0180000210.01.T01;_AED=0.48;_eAED=0.53;_QI=0|0|0|1|1|1|4|0|495
Chr1 exon 2922564 2923100 2922564 ID=MsG0180000210.01.T01:exon:6389;Parent=MsG0180000210.01.T01
Chr1 exon 2921778 2922053 2921778 ID=MsG0180000210.01.T01:exon:6390;Parent=MsG0180000210.01.T01
Chr1 exon 2918836 2918946 2918836 ID=MsG0180000210.01.T01:exon:6391;Parent=MsG0180000210.01.T01
Chr1 exon 2918073 2918636 2918073 ID=MsG0180000210.01.T01:exon:6392;Parent=MsG0180000210.01.T01
Chr1 CDS 2922564 2923100 2922564 ID=MsG0180000210.01.T01:cds;Parent=MsG0180000210.01.T01
Chr1 CDS 2921778 2922053 2921778 ID=MsG0180000210.01.T01:cds;Parent=MsG0180000210.01.T01
Chr1 CDS 2918836 2918946 2918836 ID=MsG0180000210.01.T01:cds;Parent=MsG0180000210.01.T01
Chr1 CDS 2918073 2918636 2918073 ID=MsG0180000210.01.T01:cds;Parent=MsG0180000210.01.T01
Gene Sequence

>MsG0180000210.01.T01

ATGGACACAATGCAGAATATTCCATATGAATTTTCGAAGGATCATCTTCCAAACTGCAAGATAAAGATTATTCTTCATAATTTGAAGGGAGAACAGTGGACCGTCAATTCTGTTCCTAGAACTAGATTGCATGCAAGTCACATTCTATGCGGAGGATGGTTGAATTTTGTTCGTGGCAATAGCCTAAAGATTGGAGATGTCTGTATTTTCGAACTTATAGGTGAGTGTGAATTACGTGTTCGCATCAATGAGGTTGGAAAAGATGGGTTAGACTCCCAGGTTGGAAAACTAGCTTGTAGTATGCTTAGTGCAAGACAGGATGTCGCTAGCCATAAGACTTCCAGATTTATGCCGAAGAAACATAAAATCAGCTCAAAGTGCAGTGCGGAAGTTGATCTATTAGATAAAAAGTTGTCAGAGATATGTCAAGAAGCTGCTTTATCCTCCGAGTTAAAGAAATCCGGTAGAGCTTCAAATACTTCGAAGAAGGCAGGGCTTTCCCCCAAGTCAAAAGCTGCCCATAAAAAGTCGGGTATGAAAATCCCATGCCAGTTCTCTACTGCACATCTCCCTGCTTGCAATACAGAAGTTACGCTTCGCAATTCAAGAGGCAAACGTTGGACTGTGAACTCCGTCCCATATGTTCAAGGGGAAACAACTATTCACACTTTTTGTGGCGGATGGAATGCCTTTGTTCGTGATAATGACATCAATTTTGGTGACACTTGTATTTTTGAGCTCGTTTCTGATTATGTGATGCAAGTTCGTATATCTGGGGTTGGAAAGGAAGGTCTTGATCATCAAAATGGGAATCTTGTTCTTTTGAAGAAAGTTTTGAGCTTTTGGTTATGGATACCCATGTTGAAGTTTCTAATTTTGATTTTTGTGGCTGAAAAGAAAGTGAAAAAGGAGATTGTAGCGCAGGCGCTTCCTAAAACATTCTCGGACAATTTAAAGAAGAAGTTGCCAGAAAATGTGACCCTTAAAGGTCCTAGTGGAGTTGTGTGGAATATAGGGCTGAATACTACAGGTGACACTGTTTACTTCGTGGATGGTTGGCGACGATTCGTGAAAGATCACTCTTTGAAACAGAATGATTTCCTTGTCTTTAAGTACAATGGTGAATCACTCTTTGAGGTTTTAATCTTTAATGGAGAAAGCTTCTGTGAAAAAGCAGCTTCTTATTTTGTTCTAGAATGTGGACAAGCTCATACTAAACAAGCGGGTAACAAAGGAAAGAATTCAAACAATTCCGTTGAAGAAGTCAATACTCCTAATGGTGGTGTTGTTGAATGTGCTTCGCCTGAGAAATTTCGGAGTCTTGACAGTATACGAACACCTTTAGCTCTAACTTTTGAAACTACTAATGGAAATACTTTTAATGCTGGTTTTAAATCTGCTTCCCCTGAGAAGCCTGTTATAGAAGTTACGCCTGTCCAGACTAATAAGCGAGCAAGAACACCAAAAGAAGCTAATTCTTGGGAATAG

Protein sequence

>MsG0180000210.01.T01

MDTMQNIPYEFSKDHLPNCKIKIILHNLKGEQWTVNSVPRTRLHASHILCGGWLNFVRGNSLKIGDVCIFELIGECELRVRINEVGKDGLDSQVGKLACSMLSARQDVASHKTSRFMPKKHKISSKCSAEVDLLDKKLSEICQEAALSSELKKSGRASNTSKKAGLSPKSKAAHKKSGMKIPCQFSTAHLPACNTEVTLRNSRGKRWTVNSVPYVQGETTIHTFCGGWNAFVRDNDINFGDTCIFELVSDYVMQVRISGVGKEGLDHQNGNLVLLKKVLSFWLWIPMLKFLILIFVAEKKVKKEIVAQALPKTFSDNLKKKLPENVTLKGPSGVVWNIGLNTTGDTVYFVDGWRRFVKDHSLKQNDFLVFKYNGESLFEVLIFNGESFCEKAASYFVLECGQAHTKQAGNKGKNSNNSVEEVNTPNGGVVECASPEKFRSLDSIRTPLALTFETTNGNTFNAGFKSASPEKPVIEVTPVQTNKRARTPKEANSWE*