AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015149.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015149.01.T01 MTR_3g063950 65.985 391 40 5 1 363 1 326 1.83e-146 417
MsG0380015149.01.T01 MTR_3g063940 50.895 391 100 6 1 361 1 329 1.24e-98 296
MsG0380015149.01.T01 MTR_3g063940 46.278 309 102 6 1 307 1 247 2.09e-55 183
MsG0380015149.01.T01 MTR_7g114660 57.534 146 61 1 211 356 243 387 2.05e-46 163
MsG0380015149.01.T01 MTR_8g465010 56.164 146 63 1 211 356 238 382 2.94e-44 157
MsG0380015149.01.T01 MTR_8g031500 59.420 69 27 1 288 356 275 342 2.71e-16 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015149.01.T01 AT1G54520 40.851 235 83 4 122 356 210 388 3.29e-41 149

Find 101 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACGGTAGCCTTCTAATTT+TGG 0.180906 3:-65898989 MsG0380015149.01.T01:five_prime_UTR
TTCAGGCTGGTGAGGTATTA+TGG 0.225096 3:-65894050 MsG0380015149.01.T01:intron
CTTTGCAGGTGGATCTTAAA+AGG 0.280869 3:-65896166 MsG0380015149.01.T01:intron
TAGTTTGTAGGTGTGATTTA+TGG 0.292377 3:-65897325 MsG0380015149.01.T01:intron
TCAGCATCAGCATCACTATA+AGG 0.296458 3:+65898658 None:intergenic
AACGCAAGTTGCGCAAATAT+CGG 0.304341 3:+65893133 None:intergenic
AGCTGCTAATACACGGTATA+AGG 0.310599 3:-65898351 MsG0380015149.01.T01:CDS
GTGCAGGACAGTTTCAGTTT+TGG 0.322213 3:-65897259 MsG0380015149.01.T01:CDS
GAAGGGAGCTGAAGATTTAA+AGG 0.325037 3:-65894210 MsG0380015149.01.T01:CDS
GCCTCCTCAGGAGGTGTTGC+GGG 0.330241 3:-65898793 MsG0380015149.01.T01:CDS
ATTCAAATTCTCCAAGTGTA+TGG 0.333771 3:-65898705 MsG0380015149.01.T01:CDS
AACTGTCCTGCACTAAAATA+AGG 0.348696 3:+65897269 None:intergenic
TCTTCAGCTCCCTTCATGTT+AGG 0.359596 3:+65894218 None:intergenic
TTGTTCATTGCTGGCATAAT+CGG 0.364981 3:-65898592 MsG0380015149.01.T01:CDS
CAGCATCAGCATCACTATAA+GGG 0.375179 3:+65898659 None:intergenic
CCCTTTCTTCAATTGATAGT+TGG 0.380058 3:+65896114 None:intergenic
AGTTACTGTTCTCAAGCTTC+AGG 0.384139 3:-65898524 MsG0380015149.01.T01:intron
ACACAAGTTGCGCAAATATC+AGG 0.384276 3:+65893188 None:intergenic
TACCTGTATAAACAGTTAAT+AGG 0.399358 3:+65897583 None:intergenic
TGATTCAGAGGATGATTTAG+AGG 0.401140 3:+65898738 None:intergenic
TGAAGCTTGAGAACAGTAAC+TGG 0.404982 3:+65898526 None:intergenic
AGCTTAAATCCCTTCTCTAC+TGG 0.408193 3:-65894175 MsG0380015149.01.T01:CDS
ACGCAAGTTGCGCAAATATC+GGG 0.408680 3:+65893134 None:intergenic
TTTGTTTAAGGTTGGAATGT+TGG 0.409336 3:-65898420 MsG0380015149.01.T01:intron
CATTTCATATTTCATAGACT+TGG 0.414063 3:+65893963 None:intergenic
GTTCACACTGTAGTGCCGTT+GGG 0.419240 3:-65897293 MsG0380015149.01.T01:CDS
ATCCTATTAACTGTTTATAC+AGG 0.419345 3:-65897585 MsG0380015149.01.T01:intron
GTATTCTTTGATTACACAAT+GGG 0.420280 3:-65898901 MsG0380015149.01.T01:exon
CCTATGTTAGGTAACAATAT+TGG 0.429417 3:-65894267 MsG0380015149.01.T01:intron
AACTCAGTTTCAGCCTCCTC+AGG 0.433204 3:-65898805 MsG0380015149.01.T01:CDS
GTGATTGGACCAAAATTAGA+AGG 0.438934 3:+65898980 None:intergenic
GCTTTCTCTATGAGTGGAGG+TGG 0.439122 3:-65897609 MsG0380015149.01.T01:CDS
GGTTGGAATGTTGGATGAGA+TGG 0.439180 3:-65898411 MsG0380015149.01.T01:CDS
AACAGAGACAATACAAACTT+TGG 0.439999 3:-65896316 MsG0380015149.01.T01:intron
GGGTGTCATCCTCTTTCTGT+GGG 0.443126 3:+65894025 None:intergenic
AGAGGATGATTTAGAGGATG+AGG 0.443481 3:+65898744 None:intergenic
CTTGTGTTGTCTTTAGCACT+TGG 0.444121 3:-65893172 MsG0380015149.01.T01:three_prime_UTR
TCAATAAGAAAAGCTGTGAT+TGG 0.455887 3:+65898965 None:intergenic
ACCAACTATCAATTGAAGAA+AGG 0.462903 3:-65896115 MsG0380015149.01.T01:CDS
TAAGAAGCCAGAGTTATGAT+AGG 0.462997 3:-65896037 MsG0380015149.01.T01:CDS
CCAACTATCAATTGAAGAAA+GGG 0.475889 3:-65896114 MsG0380015149.01.T01:CDS
CATCATGGTTACTGTATAGC+AGG 0.483872 3:-65896288 MsG0380015149.01.T01:CDS
CTCACTGCTTTCTCTATGAG+TGG 0.484912 3:-65897615 MsG0380015149.01.T01:CDS
TGTTCACACTGTAGTGCCGT+TGG 0.488243 3:-65897294 MsG0380015149.01.T01:CDS
AGCCTCCTCAGGAGGTGTTG+CGG 0.492206 3:-65898794 MsG0380015149.01.T01:CDS
CAAACTTTGGATAAACATCA+TGG 0.498262 3:-65896303 MsG0380015149.01.T01:CDS
TCCTCAGGAGGTGTTGCGGG+AGG 0.500511 3:-65898790 MsG0380015149.01.T01:CDS
AGGGTGTCATCCTCTTTCTG+TGG 0.504682 3:+65894024 None:intergenic
AGGAGGCTGAAACTGAGTTA+AGG 0.510377 3:+65898809 None:intergenic
TGATGTTGCGCCCATACACT+TGG 0.513962 3:+65898694 None:intergenic
TTCAAATTCTCCAAGTGTAT+GGG 0.518918 3:-65898704 MsG0380015149.01.T01:CDS
TCAAAGAATACGAGAAGACT+TGG 0.521714 3:+65898913 None:intergenic
CCCTCCCGCAACACCTCCTG+AGG 0.524621 3:+65898789 None:intergenic
ATAGATCTCTCCAGTAGAGA+AGG 0.524728 3:+65894165 None:intergenic
ATTATGGACCCCACAGAAAG+AGG 0.525005 3:-65894034 MsG0380015149.01.T01:CDS
TGATGCTGATGCTGATGATA+AGG 0.527976 3:-65898644 MsG0380015149.01.T01:CDS
GATGGGATGTACATTACAAA+GGG 0.528262 3:-65898393 MsG0380015149.01.T01:CDS
TCCCGCAACACCTCCTGAGG+AGG 0.529539 3:+65898792 None:intergenic
GATAAGGTTACAAATGATGA+AGG 0.532218 3:-65898628 MsG0380015149.01.T01:CDS
TGCTAAACCTATCATAACTC+TGG 0.532572 3:+65896030 None:intergenic
ATTGAATCGTATCGTATACT+TGG 0.535059 3:+65898942 None:intergenic
CATTACAAAGGGATCTAGCT+AGG 0.535268 3:-65898382 MsG0380015149.01.T01:CDS
TTCATAGACTTGGCTAGCTG+AGG 0.537152 3:+65893973 None:intergenic
CGTATTCTTTGATTACACAA+TGG 0.538697 3:-65898902 MsG0380015149.01.T01:exon
CCTCAGGAGGTGTTGCGGGA+GGG 0.546260 3:-65898789 MsG0380015149.01.T01:CDS
GTTGGAATGTTGGATGAGAT+GGG 0.546768 3:-65898410 MsG0380015149.01.T01:CDS
GAAATTCTTTCAGGCTGGTG+AGG 0.547725 3:-65894058 MsG0380015149.01.T01:intron
GAGGATGACACCCTTTCAGA+TGG 0.549775 3:-65894015 MsG0380015149.01.T01:CDS
ATGCAGATGGTTTGAGTGGA+GGG 0.555357 3:-65897645 MsG0380015149.01.T01:intron
GGTGGATCTTAAAAGGAGCC+AGG 0.555856 3:-65896159 MsG0380015149.01.T01:CDS
TCATAGACTTGGCTAGCTGA+GGG 0.559467 3:+65893974 None:intergenic
ATAAACAAGTGGGTAATGCT+TGG 0.562590 3:-65893939 MsG0380015149.01.T01:intron
AAGGTTACAAATGATGAAGG+AGG 0.565019 3:-65898625 MsG0380015149.01.T01:CDS
ATCACTATAAGGGGTAACAT+AGG 0.574378 3:+65898669 None:intergenic
ACATAAGCTACCTAACATGA+AGG 0.574557 3:-65894228 MsG0380015149.01.T01:CDS
TATGAAATGAATAAACAAGT+GGG 0.578318 3:-65893949 MsG0380015149.01.T01:CDS
TTCACACTGTAGTGCCGTTG+GGG 0.586243 3:-65897292 MsG0380015149.01.T01:CDS
TGTCATGCAGATGGTTTGAG+TGG 0.589501 3:-65897649 MsG0380015149.01.T01:intron
CTTTCTCTATGAGTGGAGGT+GGG 0.590914 3:-65897608 MsG0380015149.01.T01:CDS
AGATGGGATGTACATTACAA+AGG 0.592518 3:-65898394 MsG0380015149.01.T01:CDS
AGCATCAGCATCACTATAAG+GGG 0.595767 3:+65898660 None:intergenic
TAGATCTCTCCAGTAGAGAA+GGG 0.599653 3:+65894166 None:intergenic
GATCTTAAAAGGAGCCAGGA+GGG 0.605501 3:-65896155 MsG0380015149.01.T01:CDS
CTTAAAAGGAGCCAGGAGGG+TGG 0.619800 3:-65896152 MsG0380015149.01.T01:CDS
ATATGAAATGAATAAACAAG+TGG 0.621892 3:-65893950 MsG0380015149.01.T01:CDS
ACTGCTTTCTCTATGAGTGG+AGG 0.624916 3:-65897612 MsG0380015149.01.T01:CDS
GCTAATACACGGTATAAGGA+AGG 0.628417 3:-65898347 MsG0380015149.01.T01:CDS
TCAGTTTCAGCCTCCTCAGG+AGG 0.630087 3:-65898802 MsG0380015149.01.T01:CDS
GTTTAGCAATGAATATTCCA+CGG 0.633256 3:-65896015 MsG0380015149.01.T01:intron
TTGCAGAAGCTGCTAATACA+CGG 0.637222 3:-65898358 MsG0380015149.01.T01:CDS
TTGTGTTGTTATCATTAACA+TGG 0.637242 3:-65898834 MsG0380015149.01.T01:CDS
ACAATATTGGTAGCTACTAG+AGG 0.643540 3:-65894254 MsG0380015149.01.T01:CDS
GGGTAAAATTGATTAAATGA+CGG 0.644122 3:-65899006 None:intergenic
CATGCAGATGGTTTGAGTGG+AGG 0.646575 3:-65897646 MsG0380015149.01.T01:intron
ATAAGTTGTGAATGATTCAG+AGG 0.648863 3:+65898726 None:intergenic
GCACTAAAATAAGGCCCCAA+CGG 0.653400 3:+65897278 None:intergenic
CATAAGCTACCTAACATGAA+GGG 0.659099 3:-65894227 MsG0380015149.01.T01:CDS
AGGTTACAAATGATGAAGGA+GGG 0.661744 3:-65898624 MsG0380015149.01.T01:CDS
GGCGTGTGCTGTTTATTGAG+AGG 0.672280 3:-65898326 MsG0380015149.01.T01:intron
GGTGTCATCCTCTTTCTGTG+GGG 0.672684 3:+65894026 None:intergenic
GGATCTTAAAAGGAGCCAGG+AGG 0.690908 3:-65896156 MsG0380015149.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAACAAATATGTATT+TGG + Chr3:65898304-65898323 None:intergenic 10.0%
!! AAAAAAAATAAAATCATTCT+TGG + Chr3:65895712-65895731 None:intergenic 10.0%
!! AATTTATTTATATACAACTT+TGG - Chr3:65893833-65893852 MsG0380015149.01.T01:intron 10.0%
!! ATCTACTAAAAAAATTAAAA+TGG + Chr3:65897113-65897132 None:intergenic 10.0%
!! AACTAAATATATACAAAGAA+AGG - Chr3:65898712-65898731 MsG0380015149.01.T01:CDS 15.0%
!!! ATATTACCTTATATTTTGTT+TGG - Chr3:65897628-65897647 MsG0380015149.01.T01:CDS 15.0%
!!! ATTGTTTTATTTTTTTGAGT+TGG - Chr3:65896795-65896814 MsG0380015149.01.T01:intron 15.0%
!!! ATTTTGTAAAAGCAATTAAA+GGG - Chr3:65896133-65896152 MsG0380015149.01.T01:CDS 15.0%
!!! TACATAATTTTCTTAATTTG+TGG - Chr3:65897731-65897750 MsG0380015149.01.T01:intron 15.0%
!!! TTTTTTTAACCATCATTTTT+GGG - Chr3:65898675-65898694 MsG0380015149.01.T01:CDS 15.0%
!!! TTTTTTTTAACCATCATTTT+TGG - Chr3:65898674-65898693 MsG0380015149.01.T01:CDS 15.0%
!!! TTTTTTTTTCAAATTGTACA+AGG - Chr3:65895724-65895743 MsG0380015149.01.T01:intron 15.0%
!!! TTTTTTTTTGTTTATAAGTC+TGG - Chr3:65898316-65898335 MsG0380015149.01.T01:intron 15.0%
!! ATATGAAATGAATAAACAAG+TGG - Chr3:65898154-65898173 MsG0380015149.01.T01:intron 20.0%
!! ATTTGAAGATATCAAACATT+AGG + Chr3:65897383-65897402 None:intergenic 20.0%
!! CAAACAAGGATAAAATATTA+TGG + Chr3:65897016-65897035 None:intergenic 20.0%
!! GGTATGATATAATTAACTTT+GGG - Chr3:65896764-65896783 MsG0380015149.01.T01:intron 20.0%
!! GTATTAAAGTTACTTACAAT+TGG + Chr3:65895223-65895242 None:intergenic 20.0%
!! TAAATCCTCAATTAAACATA+AGG - Chr3:65897402-65897421 MsG0380015149.01.T01:intron 20.0%
!! TATGAAATGAATAAACAAGT+GGG - Chr3:65898155-65898174 MsG0380015149.01.T01:intron 20.0%
!! TGGTATGATATAATTAACTT+TGG - Chr3:65896763-65896782 MsG0380015149.01.T01:intron 20.0%
!! TTAAAAATTATATCATACCG+TGG + Chr3:65896109-65896128 None:intergenic 20.0%
!!! AAGCATATTTTAGAGTTTAA+TGG + Chr3:65896330-65896349 None:intergenic 20.0%
!!! ATTATGAGTAAAAAGTGTAT+TGG + Chr3:65898595-65898614 None:intergenic 20.0%
!!! GATTTTGTAAAAGCAATTAA+AGG - Chr3:65896132-65896151 MsG0380015149.01.T01:CDS 20.0%
!!! TATTTATCTAAGATAATCCA+AGG + Chr3:65897572-65897591 None:intergenic 20.0%
!!! TTATGAGTAAAAAGTGTATT+GGG + Chr3:65898594-65898613 None:intergenic 20.0%
!!! TTATTTTGAAACAAATAGTG+TGG - Chr3:65896239-65896258 MsG0380015149.01.T01:intron 20.0%
!!! TTTCTCTTTTTCAAATTTCT+CGG + Chr3:65896712-65896731 None:intergenic 20.0%
!!! TTTTATTCAACGTAAGAATT+GGG + Chr3:65895549-65895568 None:intergenic 20.0%
!!! TTTTTATTCAACGTAAGAAT+TGG + Chr3:65895550-65895569 None:intergenic 20.0%
! AAAACTTATTCCATAAAGTG+GGG - Chr3:65894141-65894160 MsG0380015149.01.T01:intron 25.0%
! AAAATAACCATACAGAAATG+GGG + Chr3:65896226-65896245 None:intergenic 25.0%
! AAATCATTCTTGGCTAAAAA+TGG + Chr3:65895702-65895721 None:intergenic 25.0%
! AATCCTTGAGATATTTACAA+AGG - Chr3:65897707-65897726 MsG0380015149.01.T01:intron 25.0%
! AGATTTAAGAAAGTTTGTAG+TGG + Chr3:65895245-65895264 None:intergenic 25.0%
! ATCCTATTAACTGTTTATAC+AGG - Chr3:65894519-65894538 MsG0380015149.01.T01:intron 25.0%
! ATTAACTGTTTATACAGGTA+AGG - Chr3:65894524-65894543 MsG0380015149.01.T01:intron 25.0%
! ATTCAATTGCTAGGAAAAAA+AGG + Chr3:65898206-65898225 None:intergenic 25.0%
! CAAAACTTATTCCATAAAGT+GGG - Chr3:65894140-65894159 MsG0380015149.01.T01:intron 25.0%
! CAAAATAACCATACAGAAAT+GGG + Chr3:65896227-65896246 None:intergenic 25.0%
! CAAAGATAAATTCAATTGCT+AGG + Chr3:65898215-65898234 None:intergenic 25.0%
! CATTTCATATTTCATAGACT+TGG + Chr3:65898144-65898163 None:intergenic 25.0%
! CTATAACTCAAATTGTACTT+CGG + Chr3:65895879-65895898 None:intergenic 25.0%
! GAATATAGTCAAAGTAGTAA+AGG + Chr3:65897141-65897160 None:intergenic 25.0%
! GACCAAAATAATATTACTTG+GGG + Chr3:65895680-65895699 None:intergenic 25.0%
! GATAGCAGATATAGAATTAA+AGG + Chr3:65896833-65896852 None:intergenic 25.0%
! GATGGTTAAAAAAAATGAGT+TGG + Chr3:65898669-65898688 None:intergenic 25.0%
! GGACCAAAATAATATTACTT+GGG + Chr3:65895681-65895700 None:intergenic 25.0%
! GTATTCTTTGATTACACAAT+GGG - Chr3:65893203-65893222 MsG0380015149.01.T01:three_prime_UTR 25.0%
! TACCTGTATAAACAGTTAAT+AGG + Chr3:65894524-65894543 None:intergenic 25.0%
! TATAACCTTGAAATTCTTTC+AGG - Chr3:65898037-65898056 MsG0380015149.01.T01:intron 25.0%
! TCAAAATAACCATACAGAAA+TGG + Chr3:65896228-65896247 None:intergenic 25.0%
! TCAACTTCAATTTCAACTAT+TGG - Chr3:65896582-65896601 MsG0380015149.01.T01:intron 25.0%
! TGATTTCAAAGCCATTAAAA+AGG + Chr3:65896435-65896454 None:intergenic 25.0%
! TGGACCAAAATAATATTACT+TGG + Chr3:65895682-65895701 None:intergenic 25.0%
! TGTTAGTCAAGTAATTTGAA+TGG + Chr3:65894069-65894088 None:intergenic 25.0%
! TTACTCCTTATGTTTAATTG+AGG + Chr3:65897410-65897429 None:intergenic 25.0%
! TTCTTATTACATGTAACCTA+TGG - Chr3:65897757-65897776 MsG0380015149.01.T01:intron 25.0%
! TTCTTGTGTTATAGTGAAAA+TGG - Chr3:65895313-65895332 MsG0380015149.01.T01:intron 25.0%
!! ACTATTCATGCAATATTTTC+TGG - Chr3:65897446-65897465 MsG0380015149.01.T01:intron 25.0%
!! TATGAGTAAAAAGTGTATTG+GGG + Chr3:65898593-65898612 None:intergenic 25.0%
!! TTGTGTTGTTATCATTAACA+TGG - Chr3:65893270-65893289 MsG0380015149.01.T01:intron 25.0%
!! TTTGAGTTATAGCCTATAAT+AGG - Chr3:65895887-65895906 MsG0380015149.01.T01:intron 25.0%
!!! AAATGAGTTGGTTATAGATA+TGG + Chr3:65898657-65898676 None:intergenic 25.0%
!!! ACCTTATATTTTGTTTGGAT+TGG - Chr3:65897633-65897652 MsG0380015149.01.T01:CDS 25.0%
!!! CATTTTGATATAGATTGTTG+AGG - Chr3:65894304-65894323 MsG0380015149.01.T01:intron 25.0%
!!! CCTTATATTTTGTTTGGATT+GGG - Chr3:65897634-65897653 MsG0380015149.01.T01:CDS 25.0%
!!! GTTTTTGTGTCTTTTGTTTA+AGG - Chr3:65893672-65893691 MsG0380015149.01.T01:intron 25.0%
!!! TAGTTTTTGGAAAATCATGT+TGG - Chr3:65896893-65896912 MsG0380015149.01.T01:intron 25.0%
!!! TTTATGGAATAAGTTTTGGT+TGG + Chr3:65894138-65894157 None:intergenic 25.0%
AAACAGCTCAAAATAACCTA+GGG + Chr3:65895036-65895055 None:intergenic 30.0%
AACAGAGACAATACAAACTT+TGG - Chr3:65895788-65895807 MsG0380015149.01.T01:intron 30.0%
AACATCGCATTGTTAAAACA+TGG + Chr3:65897055-65897074 None:intergenic 30.0%
AATACGTCATATTACACTAC+AGG + Chr3:65895099-65895118 None:intergenic 30.0%
AATTAAAGGGTAGGTACTTA+CGG - Chr3:65896146-65896165 MsG0380015149.01.T01:CDS 30.0%
AATTCTATATCTGCTATCAG+CGG - Chr3:65896835-65896854 MsG0380015149.01.T01:intron 30.0%
AATTGTACTTCGGACTAATT+AGG + Chr3:65895869-65895888 None:intergenic 30.0%
ACCAACTATCAATTGAAGAA+AGG - Chr3:65895989-65896008 MsG0380015149.01.T01:intron 30.0%
AGAGGTAAGAAATAAAGGAA+GGG - Chr3:65894337-65894356 MsG0380015149.01.T01:intron 30.0%
AGCCTATAATAGGTGTTAAA+GGG - Chr3:65895897-65895916 MsG0380015149.01.T01:intron 30.0%
AGGATAAAATATTATGGCGT+TGG + Chr3:65897010-65897029 None:intergenic 30.0%
ATAAGTTGTGAATGATTCAG+AGG + Chr3:65893381-65893400 None:intergenic 30.0%
ATTCAAATTCTCCAAGTGTA+TGG - Chr3:65893399-65893418 MsG0380015149.01.T01:intron 30.0%
ATTCTTACAAAATTGACGGA+AGG + Chr3:65895419-65895438 None:intergenic 30.0%
ATTGAATCGTATCGTATACT+TGG + Chr3:65893165-65893184 None:intergenic 30.0%
ATTGGTATCACATTAGAACA+TGG + Chr3:65897263-65897282 None:intergenic 30.0%
ATTGGTATCACATTAGAGTA+TGG + Chr3:65897240-65897259 None:intergenic 30.0%
CAAACTTTGGATAAACATCA+TGG - Chr3:65895801-65895820 MsG0380015149.01.T01:intron 30.0%
CCAAAACTTATTCCATAAAG+TGG - Chr3:65894139-65894158 MsG0380015149.01.T01:intron 30.0%
CCAACTATCAATTGAAGAAA+GGG - Chr3:65895990-65896009 MsG0380015149.01.T01:intron 30.0%
CCAATATTGTTACCTAACAT+AGG + Chr3:65897840-65897859 None:intergenic 30.0%
CCCAATCCAAACAAAATATA+AGG + Chr3:65897637-65897656 None:intergenic 30.0%
CCTATGTTAGGTAACAATAT+TGG - Chr3:65897837-65897856 MsG0380015149.01.T01:intron 30.0%
CGTATTCTTTGATTACACAA+TGG - Chr3:65893202-65893221 MsG0380015149.01.T01:three_prime_UTR 30.0%
GAAGAAAGGGAAAAATTTGA+TGG - Chr3:65896003-65896022 MsG0380015149.01.T01:intron 30.0%
GATAAGGTTACAAATGATGA+AGG - Chr3:65893476-65893495 MsG0380015149.01.T01:intron 30.0%
GATTGTATTTGTGAATGAAG+TGG - Chr3:65894414-65894433 MsG0380015149.01.T01:intron 30.0%
GCTCATTCTTACAAAATTGA+CGG + Chr3:65895423-65895442 None:intergenic 30.0%
GGATAAAATATTATGGCGTT+GGG + Chr3:65897009-65897028 None:intergenic 30.0%
GTAAGAAGTCAAAATACCAT+AGG + Chr3:65897776-65897795 None:intergenic 30.0%
GTTTAGCAATGAATATTCCA+CGG - Chr3:65896089-65896108 MsG0380015149.01.T01:CDS 30.0%
TAGAGGTAAGAAATAAAGGA+AGG - Chr3:65894336-65894355 MsG0380015149.01.T01:intron 30.0%
TAGCCTATAATAGGTGTTAA+AGG - Chr3:65895896-65895915 MsG0380015149.01.T01:intron 30.0%
TAGCCTTTGTAAATATCTCA+AGG + Chr3:65897713-65897732 None:intergenic 30.0%
TAGGTAGAGGTAAGAAATAA+AGG - Chr3:65894332-65894351 MsG0380015149.01.T01:intron 30.0%
TATCACATTAGAACATGGAT+TGG + Chr3:65897258-65897277 None:intergenic 30.0%
TCAATAAGAAAAGCTGTGAT+TGG + Chr3:65893142-65893161 None:intergenic 30.0%
TCCATAAGTATATGTCTGTT+AGG - Chr3:65894016-65894035 MsG0380015149.01.T01:CDS 30.0%
TCCTAACAGACATATACTTA+TGG + Chr3:65894020-65894039 None:intergenic 30.0%
TCTTTGTAAAAAGTAGCAGT+TGG - Chr3:65898229-65898248 MsG0380015149.01.T01:intron 30.0%
TGAAACGAGTTTATAAGTAG+TGG - Chr3:65895577-65895596 MsG0380015149.01.T01:intron 30.0%
TGGACATAAGTATACTACAT+TGG + Chr3:65897281-65897300 None:intergenic 30.0%
TGTAAAAGCAATTAAAGGGT+AGG - Chr3:65896137-65896156 MsG0380015149.01.T01:CDS 30.0%
TGTACAAGTAATGTTCTCAA+AGG + Chr3:65897345-65897364 None:intergenic 30.0%
TTCAAATTCTCCAAGTGTAT+GGG - Chr3:65893400-65893419 MsG0380015149.01.T01:intron 30.0%
TTCTTACAAAATTGACGGAA+GGG + Chr3:65895418-65895437 None:intergenic 30.0%
TTGATATAGATTGTTGAGGT+GGG - Chr3:65894308-65894327 MsG0380015149.01.T01:intron 30.0%
TTTGATATAGATTGTTGAGG+TGG - Chr3:65894307-65894326 MsG0380015149.01.T01:intron 30.0%
! AAGAATTTTCTGTGCATGTT+TGG + Chr3:65896941-65896960 None:intergenic 30.0%
! AAGGGGAAAATTTAGGATTA+TGG - Chr3:65894933-65894952 MsG0380015149.01.T01:intron 30.0%
! AAGTAGTTTTCCATCTGAAA+GGG + Chr3:65898102-65898121 None:intergenic 30.0%
! AGCCCCAAGTAATATTATTT+TGG - Chr3:65895675-65895694 MsG0380015149.01.T01:intron 30.0%
! ATGATTTGGAAGACAAGAAA+TGG - Chr3:65894391-65894410 MsG0380015149.01.T01:intron 30.0%
! CACATTTGTCAAAGCATTAT+TGG + Chr3:65893883-65893902 None:intergenic 30.0%
! CCACTTTATGGAATAAGTTT+TGG + Chr3:65894142-65894161 None:intergenic 30.0%
! CGTATTTTCTTTTTGTTGCA+TGG - Chr3:65895113-65895132 MsG0380015149.01.T01:intron 30.0%
! TAAGTAGTTTTCCATCTGAA+AGG + Chr3:65898103-65898122 None:intergenic 30.0%
! TAATTTGGAATGCTACACTT+TGG - Chr3:65894368-65894387 MsG0380015149.01.T01:intron 30.0%
! TAGTTTGTAGGTGTGATTTA+TGG - Chr3:65894779-65894798 MsG0380015149.01.T01:intron 30.0%
! TATTTGAGATGTCCTATGTT+AGG - Chr3:65897825-65897844 MsG0380015149.01.T01:intron 30.0%
! TGATTTGGAAGACAAGAAAT+GGG - Chr3:65894392-65894411 MsG0380015149.01.T01:intron 30.0%
! TTAAACTTTTGTCATGCAGA+TGG - Chr3:65894446-65894465 MsG0380015149.01.T01:intron 30.0%
! TTGATATACTTCTTGTTGTC+TGG - Chr3:65895757-65895776 MsG0380015149.01.T01:intron 30.0%
! TTTCTGTTTTGTAGCTAGTT+TGG - Chr3:65895053-65895072 MsG0380015149.01.T01:intron 30.0%
! TTTGTTTAAGGTTGGAATGT+TGG - Chr3:65893684-65893703 MsG0380015149.01.T01:intron 30.0%
!! AAGTTATATGTTGACTTTCG+AGG - Chr3:65894184-65894203 MsG0380015149.01.T01:CDS 30.0%
!! AGCTAGTTTGGTTAGTATTT+TGG - Chr3:65895065-65895084 MsG0380015149.01.T01:intron 30.0%
!! CAACATCTTTTTAGTCTAAG+TGG - Chr3:65897681-65897700 MsG0380015149.01.T01:intron 30.0%
!! CAATAACTTTATACCGATTC+CGG - Chr3:65895161-65895180 MsG0380015149.01.T01:intron 30.0%
!! CTTCAATTTCTAGTGATATG+CGG - Chr3:65896347-65896366 MsG0380015149.01.T01:intron 30.0%
!! TTCAATTTCTAGTGATATGC+GGG - Chr3:65896348-65896367 MsG0380015149.01.T01:intron 30.0%
!! TTGTGTCTTTTGTTTAAGGT+TGG - Chr3:65893676-65893695 MsG0380015149.01.T01:intron 30.0%
!!! GTTTCTGTAGCTGTTTTTTT+CGG - Chr3:65894709-65894728 MsG0380015149.01.T01:intron 30.0%
AACACAAGTCTCACATTGAA+TGG - Chr3:65895353-65895372 MsG0380015149.01.T01:intron 35.0%
AACTGTCCTGCACTAAAATA+AGG + Chr3:65894838-65894857 None:intergenic 35.0%
AAGGTTACAAATGATGAAGG+AGG - Chr3:65893479-65893498 MsG0380015149.01.T01:intron 35.0%
ACATAAGCTACCTAACATGA+AGG - Chr3:65897876-65897895 MsG0380015149.01.T01:intron 35.0%
ACCCCTTTAACACCTATTAT+AGG + Chr3:65895902-65895921 None:intergenic 35.0%
ACCTATAAGTTAGCTGTGTA+AGG - Chr3:65895608-65895627 MsG0380015149.01.T01:intron 35.0%
AGAAGCAAAACACACTGAAT+CGG + Chr3:65894670-65894689 None:intergenic 35.0%
AGATGGGATGTACATTACAA+AGG - Chr3:65893710-65893729 MsG0380015149.01.T01:intron 35.0%
AGCCATTAAAAGAGAACTGA+AGG + Chr3:65896426-65896445 None:intergenic 35.0%
AGCGTATGGTTCATTGTTAA+GGG - Chr3:65897497-65897516 MsG0380015149.01.T01:intron 35.0%
AGGTTACAAATGATGAAGGA+GGG - Chr3:65893480-65893499 MsG0380015149.01.T01:intron 35.0%
AGTTGTACACATGCATTCAA+TGG + Chr3:65893937-65893956 None:intergenic 35.0%
ATAAACAAGTGGGTAATGCT+TGG - Chr3:65898165-65898184 MsG0380015149.01.T01:intron 35.0%
ATACGTTGTCCCAAAAATGA+TGG + Chr3:65898687-65898706 None:intergenic 35.0%
ATCACTATAAGGGGTAACAT+AGG + Chr3:65893438-65893457 None:intergenic 35.0%
ATGCTACACTTTGGATGATT+TGG - Chr3:65894377-65894396 MsG0380015149.01.T01:intron 35.0%
ATTAGAGAGAGAGAACCATA+TGG - Chr3:65897598-65897617 MsG0380015149.01.T01:CDS 35.0%
ATTCTATATCTGCTATCAGC+GGG - Chr3:65896836-65896855 MsG0380015149.01.T01:intron 35.0%
ATTGATATAGATTGTCGAGG+TGG - Chr3:65894261-65894280 MsG0380015149.01.T01:intron 35.0%
CAACGAGATTCTATATTGAC+TGG - Chr3:65895276-65895295 MsG0380015149.01.T01:intron 35.0%
CACATTGATATAGATTGTCG+AGG - Chr3:65894258-65894277 MsG0380015149.01.T01:CDS 35.0%
CATAAGCTACCTAACATGAA+GGG - Chr3:65897877-65897896 MsG0380015149.01.T01:intron 35.0%
CGATAGAGTAAAGAACACAA+TGG - Chr3:65898759-65898778 MsG0380015149.01.T01:CDS 35.0%
CTACTGCATTCACAAGTAAT+TGG + Chr3:65897301-65897320 None:intergenic 35.0%
GAAACAGCTCAAAATAACCT+AGG + Chr3:65895037-65895056 None:intergenic 35.0%
GAGGTAAGAAATAAAGGAAG+GGG - Chr3:65894338-65894357 MsG0380015149.01.T01:intron 35.0%
GATGGGATGTACATTACAAA+GGG - Chr3:65893711-65893730 MsG0380015149.01.T01:intron 35.0%
GCCATTAAAAGAGAACTGAA+GGG + Chr3:65896425-65896444 None:intergenic 35.0%
GCCTATAATAGGTGTTAAAG+GGG - Chr3:65895898-65895917 MsG0380015149.01.T01:intron 35.0%
GGTAATATTGAACCACCATA+TGG + Chr3:65897616-65897635 None:intergenic 35.0%
GTGATTGGACCAAAATTAGA+AGG + Chr3:65893127-65893146 None:intergenic 35.0%
TAAGAAGCCAGAGTTATGAT+AGG - Chr3:65896067-65896086 MsG0380015149.01.T01:CDS 35.0%
TAGCGTATGGTTCATTGTTA+AGG - Chr3:65897496-65897515 MsG0380015149.01.T01:intron 35.0%
TAGTAAAAACCTTACGAGAG+AGG + Chr3:65896381-65896400 None:intergenic 35.0%
TATAAGTTAGCTGTGTAAGG+AGG - Chr3:65895611-65895630 MsG0380015149.01.T01:intron 35.0%
TATAGATATGGCAGTCACTT+AGG + Chr3:65898645-65898664 None:intergenic 35.0%
TATGGTTCTCTCTCTCTAAT+TGG + Chr3:65897598-65897617 None:intergenic 35.0%
TCAAAGAATACGAGAAGACT+TGG + Chr3:65893194-65893213 None:intergenic 35.0%
TCATGGCAAATGAGTTTATC+TGG - Chr3:65898373-65898392 MsG0380015149.01.T01:CDS 35.0%
TCCTTACACAGCTAACTTAT+AGG + Chr3:65895612-65895631 None:intergenic 35.0%
TCTGTGGTAGTATCATTTGA+CGG - Chr3:65894869-65894888 MsG0380015149.01.T01:intron 35.0%
TGATATAGATTGTTGAGGTG+GGG - Chr3:65894309-65894328 MsG0380015149.01.T01:intron 35.0%
TGATTCAGAGGATGATTTAG+AGG + Chr3:65893369-65893388 None:intergenic 35.0%
TGCTAAACCTATCATAACTC+TGG + Chr3:65896077-65896096 None:intergenic 35.0%
TGGTGTAAAGGGGAAAATTT+AGG - Chr3:65894926-65894945 MsG0380015149.01.T01:intron 35.0%
TGTATTGTCTCTGTTACAGA+AGG + Chr3:65895783-65895802 None:intergenic 35.0%
TGTTTATACAGGTAAGGACT+GGG - Chr3:65894530-65894549 MsG0380015149.01.T01:intron 35.0%
TTACGCTCACATTCAATGAA+AGG + Chr3:65896281-65896300 None:intergenic 35.0%
TTCCCCTTTACACCATAAAA+AGG + Chr3:65894921-65894940 None:intergenic 35.0%
TTGAAACAAATAGTGTGGCA+TGG - Chr3:65896244-65896263 MsG0380015149.01.T01:intron 35.0%
TTGATATAGATTGTCGAGGT+GGG - Chr3:65894262-65894281 MsG0380015149.01.T01:intron 35.0%
TTGTTCATTGCTGGCATAAT+CGG - Chr3:65893512-65893531 MsG0380015149.01.T01:intron 35.0%
! AAGCTACGCTATGTAGTTTT+TGG - Chr3:65896880-65896899 MsG0380015149.01.T01:intron 35.0%
! ACAATATTGGTAGCTACTAG+AGG - Chr3:65897850-65897869 MsG0380015149.01.T01:intron 35.0%
! ACCCTTCAGTTCTCTTTTAA+TGG - Chr3:65896421-65896440 MsG0380015149.01.T01:intron 35.0%
! CACTGCAGAAACCTTTTTAA+TGG - Chr3:65896460-65896479 MsG0380015149.01.T01:intron 35.0%
! CCCTTTCTTCAATTGATAGT+TGG + Chr3:65895993-65896012 None:intergenic 35.0%
! CTGCCTTTTTATGGTGTAAA+GGG - Chr3:65894915-65894934 MsG0380015149.01.T01:intron 35.0%
! GCTCTCTGTTTTCATCATTT+AGG - Chr3:65898559-65898578 MsG0380015149.01.T01:CDS 35.0%
! GGTTTTTACTAGGTGGAAAA+TGG - Chr3:65896390-65896409 MsG0380015149.01.T01:intron 35.0%
! GTACAACTTTTGTACAGTGA+CGG - Chr3:65893949-65893968 MsG0380015149.01.T01:CDS 35.0%
! TATCCTTGTTTGCTCAGTAA+TGG - Chr3:65897024-65897043 MsG0380015149.01.T01:intron 35.0%
! TCTCTCGTAAGGTTTTTACT+AGG - Chr3:65896380-65896399 MsG0380015149.01.T01:intron 35.0%
! TGAAGCATTCATATAGCGTA+TGG - Chr3:65897483-65897502 MsG0380015149.01.T01:intron 35.0%
! TGCCTTTTTATGGTGTAAAG+GGG - Chr3:65894916-65894935 MsG0380015149.01.T01:intron 35.0%
! TTCACTGCAGAAACTTTTCA+CGG - Chr3:65896525-65896544 MsG0380015149.01.T01:intron 35.0%
! TTTTCCTTTGATCCAAAGTG+CGG - Chr3:65898494-65898513 MsG0380015149.01.T01:intron 35.0%
! TTTTTATCCAGTCTCAAGTC+CGG + Chr3:65894233-65894252 None:intergenic 35.0%
!! TTCGTGTTTTTGTTCATTGC+TGG - Chr3:65893503-65893522 MsG0380015149.01.T01:intron 35.0%
!!! CTCTAGTTTTTAAGTGTAGC+AGG - Chr3:65894752-65894771 MsG0380015149.01.T01:intron 35.0%
AAAAAGAGAAACCTCGCAGT+GGG - Chr3:65896721-65896740 MsG0380015149.01.T01:intron 40.0%
AACGCAAGTTGCGCAAATAT+CGG + Chr3:65898974-65898993 None:intergenic 40.0%
AATCGAACACGAGACAAATC+CGG + Chr3:65895183-65895202 None:intergenic 40.0%
ACAAGATAAACTCCGCACTT+TGG + Chr3:65898509-65898528 None:intergenic 40.0%
ACACAAGTTGCGCAAATATC+AGG + Chr3:65898919-65898938 None:intergenic 40.0%
ACCAGCCTGAAAGAATTTCA+AGG + Chr3:65898045-65898064 None:intergenic 40.0%
ACCTGCAAAGATTGTCATCA+AGG + Chr3:65895928-65895947 None:intergenic 40.0%
ACCTTGAAATTCTTTCAGGC+TGG - Chr3:65898041-65898060 MsG0380015149.01.T01:intron 40.0%
ACTTCGGACTAATTAGGAGA+AGG + Chr3:65895863-65895882 None:intergenic 40.0%
AGAAATAAAGGAAGGGGATC+TGG - Chr3:65894344-65894363 MsG0380015149.01.T01:intron 40.0%
AGAGGATGATTTAGAGGATG+AGG + Chr3:65893363-65893382 None:intergenic 40.0%
AGCATCAGCATCACTATAAG+GGG + Chr3:65893447-65893466 None:intergenic 40.0%
AGCTGCTAATACACGGTATA+AGG - Chr3:65893753-65893772 MsG0380015149.01.T01:intron 40.0%
AGCTTAAATCCCTTCTCTAC+TGG - Chr3:65897929-65897948 MsG0380015149.01.T01:intron 40.0%
AGTTACTGTTCTCAAGCTTC+AGG - Chr3:65893580-65893599 MsG0380015149.01.T01:intron 40.0%
AGTTTACTGAAGACTGTTGC+TGG - Chr3:65898400-65898419 MsG0380015149.01.T01:CDS 40.0%
ATAAAAAGGCAGCAGAAGAC+AGG + Chr3:65894907-65894926 None:intergenic 40.0%
ATACTTATGGACAGAAGCAG+AGG + Chr3:65894007-65894026 None:intergenic 40.0%
ATAGATCTCTCCAGTAGAGA+AGG + Chr3:65897942-65897961 None:intergenic 40.0%
ATCAAACTGCAGAAGACTAG+TGG + Chr3:65896667-65896686 None:intergenic 40.0%
ATTGACCCATCAGAAAAGCT+AGG + Chr3:65895145-65895164 None:intergenic 40.0%
ATTTGAAAGCAGTAGGGTCA+AGG - Chr3:65897543-65897562 MsG0380015149.01.T01:intron 40.0%
CAGCATCAGCATCACTATAA+GGG + Chr3:65893448-65893467 None:intergenic 40.0%
CATCATGGTTACTGTATAGC+AGG - Chr3:65895816-65895835 MsG0380015149.01.T01:intron 40.0%
CATTACAAAGGGATCTAGCT+AGG - Chr3:65893722-65893741 MsG0380015149.01.T01:intron 40.0%
CCTGCAAAGATTGTCATCAA+GGG + Chr3:65895927-65895946 None:intergenic 40.0%
CTATAGTCAACCCCACTTTA+TGG + Chr3:65894154-65894173 None:intergenic 40.0%
CTGTTTATACAGGTAAGGAC+TGG - Chr3:65894529-65894548 MsG0380015149.01.T01:intron 40.0%
CTTGTGTTGTCTTTAGCACT+TGG - Chr3:65898932-65898951 MsG0380015149.01.T01:five_prime_UTR 40.0%
CTTTGCAGGTGGATCTTAAA+AGG - Chr3:65895938-65895957 MsG0380015149.01.T01:intron 40.0%
GAAGGGAGCTGAAGATTTAA+AGG - Chr3:65897894-65897913 MsG0380015149.01.T01:intron 40.0%
GATCCATTACTGAGCAAACA+AGG + Chr3:65897030-65897049 None:intergenic 40.0%
GATTTGTCTCGTGTTCGATT+TGG - Chr3:65895183-65895202 MsG0380015149.01.T01:intron 40.0%
GCAAAGACTCCAAATTACCA+TGG - Chr3:65898530-65898549 MsG0380015149.01.T01:CDS 40.0%
GCTAATACACGGTATAAGGA+AGG - Chr3:65893757-65893776 MsG0380015149.01.T01:intron 40.0%
GTCTGCATTTGAAAGCAGTA+GGG - Chr3:65897537-65897556 MsG0380015149.01.T01:intron 40.0%
GTTCGACAACAAGTACATAG+TGG - Chr3:65896743-65896762 MsG0380015149.01.T01:intron 40.0%
GTTGGAATGTTGGATGAGAT+GGG - Chr3:65893694-65893713 MsG0380015149.01.T01:intron 40.0%
TAAAAGAGAACTGAAGGGTG+AGG + Chr3:65896420-65896439 None:intergenic 40.0%
TAACAATGCGATGTTGCAAG+TGG - Chr3:65897060-65897079 MsG0380015149.01.T01:intron 40.0%
TACAAAATTGACGGAAGGGT+GGG + Chr3:65895414-65895433 None:intergenic 40.0%
TAGATCTCTCCAGTAGAGAA+GGG + Chr3:65897941-65897960 None:intergenic 40.0%
TCAGCATCAGCATCACTATA+AGG + Chr3:65893449-65893468 None:intergenic 40.0%
TGAAGCTTGAGAACAGTAAC+TGG + Chr3:65893581-65893600 None:intergenic 40.0%
TGATATAGATTGTCGAGGTG+GGG - Chr3:65894263-65894282 MsG0380015149.01.T01:intron 40.0%
TGATGCTGATGCTGATGATA+AGG - Chr3:65893460-65893479 MsG0380015149.01.T01:intron 40.0%
TGTCTGCATTTGAAAGCAGT+AGG - Chr3:65897536-65897555 MsG0380015149.01.T01:intron 40.0%
TTACAAAATTGACGGAAGGG+TGG + Chr3:65895415-65895434 None:intergenic 40.0%
TTGACCCATCAGAAAAGCTA+GGG + Chr3:65895144-65895163 None:intergenic 40.0%
TTGCAGAAGCTGCTAATACA+CGG - Chr3:65893746-65893765 MsG0380015149.01.T01:intron 40.0%
TTTGAAAGCAGTAGGGTCAA+GGG - Chr3:65897544-65897563 MsG0380015149.01.T01:intron 40.0%
! AGCTTTGTGCCATGGTAATT+TGG + Chr3:65898542-65898561 None:intergenic 40.0%
! CTCGTAAGGTTTTTACTAGG+TGG - Chr3:65896383-65896402 MsG0380015149.01.T01:intron 40.0%
! GATTCTATATTGACTGGCGT+AGG - Chr3:65895282-65895301 MsG0380015149.01.T01:intron 40.0%
! GCATTCAATCGATTCATGCA+TGG + Chr3:65897190-65897209 None:intergenic 40.0%
! GCTGCCTTTTTATGGTGTAA+AGG - Chr3:65894914-65894933 MsG0380015149.01.T01:intron 40.0%
! TCACTGCAGAAACTTTTCAC+GGG - Chr3:65896526-65896545 MsG0380015149.01.T01:intron 40.0%
! TCATTTGACGGCAGTTTTTG+AGG - Chr3:65894881-65894900 MsG0380015149.01.T01:intron 40.0%
! TGACGGTAGCCTTCTAATTT+TGG - Chr3:65893115-65893134 MsG0380015149.01.T01:three_prime_UTR 40.0%
! TGTCTTCTGCTGCCTTTTTA+TGG - Chr3:65894906-65894925 MsG0380015149.01.T01:intron 40.0%
! TTGATGACAATCTTTGCAGG+TGG - Chr3:65895927-65895946 MsG0380015149.01.T01:intron 40.0%
! TTTTATCCAGTCTCAAGTCC+GGG + Chr3:65894232-65894251 None:intergenic 40.0%
!! AAAATCATGTTGGCTCACCA+TGG - Chr3:65896903-65896922 MsG0380015149.01.T01:intron 40.0%
!! AACTCCCTAGCTTTTCTGAT+GGG - Chr3:65895137-65895156 MsG0380015149.01.T01:intron 40.0%
!! CCAATAGTGTTGGTTTGAGT+GGG - Chr3:65895509-65895528 MsG0380015149.01.T01:intron 40.0%
!! GTAGCAGGTTGTTAGTTTGT+AGG - Chr3:65894767-65894786 MsG0380015149.01.T01:intron 40.0%
!! TAACTCCCTAGCTTTTCTGA+TGG - Chr3:65895136-65895155 MsG0380015149.01.T01:intron 40.0%
!!! CAGTTTCAGTTTTGGTTCTG+TGG - Chr3:65894853-65894872 MsG0380015149.01.T01:intron 40.0%
!!! TACATTTTGGTTGGTGTCCT+TGG - Chr3:65894563-65894582 MsG0380015149.01.T01:intron 40.0%
!!! TAGCTGTTTTTTTCGGATGC+AGG - Chr3:65894716-65894735 MsG0380015149.01.T01:intron 40.0%
!!! TTTGCTTCTAGTGCTGGTTT+TGG - Chr3:65894681-65894700 MsG0380015149.01.T01:intron 40.0%
AACACTATTGGCGTGTTGTG+CGG + Chr3:65895500-65895519 None:intergenic 45.0%
AACTCCGCACTTTGGATCAA+AGG + Chr3:65898501-65898520 None:intergenic 45.0%
ACACGAGACAAATCCGGAAT+CGG + Chr3:65895177-65895196 None:intergenic 45.0%
ACGCAAGTTGCGCAAATATC+GGG + Chr3:65898973-65898992 None:intergenic 45.0%
ACTGCTTTCTCTATGAGTGG+AGG - Chr3:65894492-65894511 MsG0380015149.01.T01:intron 45.0%
AGAGAGAGAGAACCATATGG+TGG - Chr3:65897601-65897620 MsG0380015149.01.T01:CDS 45.0%
AGGAGGCTGAAACTGAGTTA+AGG + Chr3:65893298-65893317 None:intergenic 45.0%
ATAGATTGTTGAGGTGGGGT+AGG - Chr3:65894313-65894332 MsG0380015149.01.T01:intron 45.0%
ATGCAGATGGTTTGAGTGGA+GGG - Chr3:65894459-65894478 MsG0380015149.01.T01:intron 45.0%
ATTATGGACCCCACAGAAAG+AGG - Chr3:65898070-65898089 MsG0380015149.01.T01:intron 45.0%
CATACAGAAATGGGGTGACA+TGG + Chr3:65896218-65896237 None:intergenic 45.0%
CATGTCACCCCATTTCTGTA+TGG - Chr3:65896216-65896235 MsG0380015149.01.T01:intron 45.0%
CCCACTCAAACCAACACTAT+TGG + Chr3:65895512-65895531 None:intergenic 45.0%
CGGAATCTTTGTGTCAGCAT+CGG + Chr3:65894650-65894669 None:intergenic 45.0%
CTCACTGCTTTCTCTATGAG+TGG - Chr3:65894489-65894508 MsG0380015149.01.T01:intron 45.0%
CTTTCTCTATGAGTGGAGGT+GGG - Chr3:65894496-65894515 MsG0380015149.01.T01:intron 45.0%
GAAAAAGAGAAACCTCGCAG+TGG - Chr3:65896720-65896739 MsG0380015149.01.T01:intron 45.0%
GAAATTCTTTCAGGCTGGTG+AGG - Chr3:65898046-65898065 MsG0380015149.01.T01:intron 45.0%
GATCTTAAAAGGAGCCAGGA+GGG - Chr3:65895949-65895968 MsG0380015149.01.T01:intron 45.0%
GCACTAAAATAAGGCCCCAA+CGG + Chr3:65894829-65894848 None:intergenic 45.0%
GGTTGGAATGTTGGATGAGA+TGG - Chr3:65893693-65893712 MsG0380015149.01.T01:intron 45.0%
GTGTTGTGGGGAGTTTATCA+TGG - Chr3:65898356-65898375 MsG0380015149.01.T01:CDS 45.0%
TCATTGAGCCAAGCAAGTGA+TGG + Chr3:65898452-65898471 None:intergenic 45.0%
TCTTCAGCTCCCTTCATGTT+AGG + Chr3:65897889-65897908 None:intergenic 45.0%
TGAACATCAACTCTAGCTGC+AGG + Chr3:65894964-65894983 None:intergenic 45.0%
TGGTGCATTATAGTGTCCCT+AGG - Chr3:65895017-65895036 MsG0380015149.01.T01:intron 45.0%
TGTCATGCAGATGGTTTGAG+TGG - Chr3:65894455-65894474 MsG0380015149.01.T01:intron 45.0%
TGTGCATGTTTGGTATCTGC+TGG + Chr3:65896931-65896950 None:intergenic 45.0%
TTTGGTATCTGCTGGAACCA+TGG + Chr3:65896923-65896942 None:intergenic 45.0%
! AAACAGAGAGCTTTGTGCCA+TGG + Chr3:65898550-65898569 None:intergenic 45.0%
! ACACAACCTCTCCTTTTACC+CGG - Chr3:65894211-65894230 MsG0380015149.01.T01:CDS 45.0%
! CACAATGGAAGCATGAGAGA+TGG - Chr3:65898774-65898793 MsG0380015149.01.T01:CDS 45.0%
! CCCTTGATGACAATCTTTGC+AGG - Chr3:65895924-65895943 MsG0380015149.01.T01:intron 45.0%
! GTGCAGGACAGTTTCAGTTT+TGG - Chr3:65894845-65894864 MsG0380015149.01.T01:intron 45.0%
! GTGTGTTTTGCTTCTAGTGC+TGG - Chr3:65894675-65894694 MsG0380015149.01.T01:intron 45.0%
! TCATAGACTTGGCTAGCTGA+GGG + Chr3:65898133-65898152 None:intergenic 45.0%
! TCTGGAATGAGTTGCAGACA+AGG - Chr3:65898334-65898353 MsG0380015149.01.T01:CDS 45.0%
! TTCAGGCTGGTGAGGTATTA+TGG - Chr3:65898054-65898073 MsG0380015149.01.T01:intron 45.0%
! TTCATAGACTTGGCTAGCTG+AGG + Chr3:65898134-65898153 None:intergenic 45.0%
!! AGTTGCAGACAAGGTGTTGT+GGG - Chr3:65898343-65898362 MsG0380015149.01.T01:CDS 45.0%
!! GCCAATAGTGTTGGTTTGAG+TGG - Chr3:65895508-65895527 MsG0380015149.01.T01:intron 45.0%
!!! TTGGGGCCTTATTTTAGTGC+AGG - Chr3:65894829-65894848 MsG0380015149.01.T01:intron 45.0%
AACTCAGTTTCAGCCTCCTC+AGG - Chr3:65893299-65893318 MsG0380015149.01.T01:intron 50.0%
ACATCAACTCTAGCTGCAGG+AGG + Chr3:65894961-65894980 None:intergenic 50.0%
ATACAGGTAAGGACTGGGTG+AGG - Chr3:65894535-65894554 MsG0380015149.01.T01:intron 50.0%
CAGTCTCAAGTCCGGGTAAA+AGG + Chr3:65894225-65894244 None:intergenic 50.0%
CATGCAGATGGTTTGAGTGG+AGG - Chr3:65894458-65894477 MsG0380015149.01.T01:intron 50.0%
GACCAGAAAACTCTTCGCCA+AGG + Chr3:65894583-65894602 None:intergenic 50.0%
GAGGATGACACCCTTTCAGA+TGG - Chr3:65898089-65898108 MsG0380015149.01.T01:intron 50.0%
GATGCAGAGTTGTGTGCTTC+TGG - Chr3:65894984-65895003 MsG0380015149.01.T01:intron 50.0%
GCACAACACGCCAATAGTGT+TGG - Chr3:65895499-65895518 MsG0380015149.01.T01:intron 50.0%
GCTTTCTCTATGAGTGGAGG+TGG - Chr3:65894495-65894514 MsG0380015149.01.T01:intron 50.0%
GGAACAGATCCTCTCTCGTA+AGG - Chr3:65896369-65896388 MsG0380015149.01.T01:intron 50.0%
GGAAGGGGATCTGGCTAATT+TGG - Chr3:65894353-65894372 MsG0380015149.01.T01:intron 50.0%
GGATCTTAAAAGGAGCCAGG+AGG - Chr3:65895948-65895967 MsG0380015149.01.T01:intron 50.0%
GGTGGATCTTAAAAGGAGCC+AGG - Chr3:65895945-65895964 MsG0380015149.01.T01:intron 50.0%
TCAAGTCCGGGTAAAAGGAG+AGG + Chr3:65894220-65894239 None:intergenic 50.0%
TGATGTTGCGCCCATACACT+TGG + Chr3:65893413-65893432 None:intergenic 50.0%
TGTTCACACTGTAGTGCCGT+TGG - Chr3:65894810-65894829 MsG0380015149.01.T01:intron 50.0%
! AGCATTTTTCTCCACCCTCC+TGG + Chr3:65895966-65895985 None:intergenic 50.0%
! AGGGTGTCATCCTCTTTCTG+TGG + Chr3:65898083-65898102 None:intergenic 50.0%
! CTTTTACCCGGACTTGAGAC+TGG - Chr3:65894223-65894242 MsG0380015149.01.T01:CDS 50.0%
! GGGTGTCATCCTCTTTCTGT+GGG + Chr3:65898082-65898101 None:intergenic 50.0%
! GGTGTCATCCTCTTTCTGTG+GGG + Chr3:65898081-65898100 None:intergenic 50.0%
! GTCCTTGGCGAAGAGTTTTC+TGG - Chr3:65894578-65894597 MsG0380015149.01.T01:intron 50.0%
! GTTCACACTGTAGTGCCGTT+GGG - Chr3:65894811-65894830 MsG0380015149.01.T01:intron 50.0%
! TTCACACTGTAGTGCCGTTG+GGG - Chr3:65894812-65894831 MsG0380015149.01.T01:intron 50.0%
!! ATCTTTGTGTCAGCATCGGC+AGG + Chr3:65894646-65894665 None:intergenic 50.0%
!! GAGGAGGGGTACATTTTGGT+TGG - Chr3:65894554-65894573 MsG0380015149.01.T01:intron 50.0%
!! GAGTTGCAGACAAGGTGTTG+TGG - Chr3:65898342-65898361 MsG0380015149.01.T01:CDS 50.0%
!! GGCGTGTGCTGTTTATTGAG+AGG - Chr3:65893778-65893797 MsG0380015149.01.T01:intron 50.0%
!! GTTGCAGACAAGGTGTTGTG+GGG - Chr3:65898344-65898363 MsG0380015149.01.T01:CDS 50.0%
!! GTTGGTTTGAGTGGGTGCAT+TGG - Chr3:65895517-65895536 MsG0380015149.01.T01:intron 50.0%
AGGTAAGGACTGGGTGAGGA+GGG - Chr3:65894539-65894558 MsG0380015149.01.T01:intron 55.0%
CAGTAGGGTCAAGGGTTCCT+TGG - Chr3:65897552-65897571 MsG0380015149.01.T01:intron 55.0%
CGAGTCGACCATCACTTGCT+TGG - Chr3:65898441-65898460 MsG0380015149.01.T01:intron 55.0%
CTTAAAAGGAGCCAGGAGGG+TGG - Chr3:65895952-65895971 MsG0380015149.01.T01:intron 55.0%
GGGGTGACATGGCAAAGTAG+TGG + Chr3:65896207-65896226 None:intergenic 55.0%
GTGCTTCTGGTCTGCAGCTT+TGG - Chr3:65894997-65895016 MsG0380015149.01.T01:intron 55.0%
TCAGTTTCAGCCTCCTCAGG+AGG - Chr3:65893302-65893321 MsG0380015149.01.T01:intron 55.0%
TGTTGAGGTGGGGTAGGTAG+AGG - Chr3:65894319-65894338 MsG0380015149.01.T01:intron 55.0%
TTGTTGTCGAACCCACTGCG+AGG + Chr3:65896735-65896754 None:intergenic 55.0%
!! GGGTGAGGAGGGGTACATTT+TGG - Chr3:65894550-65894569 MsG0380015149.01.T01:intron 55.0%
CAGGTAAGGACTGGGTGAGG+AGG - Chr3:65894538-65894557 MsG0380015149.01.T01:intron 60.0%
CGCTGCTGTCAGTCTGTGTG+AGG - Chr3:65894602-65894621 MsG0380015149.01.T01:intron 60.0%
GGTAAGGACTGGGTGAGGAG+GGG - Chr3:65894540-65894559 MsG0380015149.01.T01:intron 60.0%
!! AGCCTCCTCAGGAGGTGTTG+CGG - Chr3:65893310-65893329 MsG0380015149.01.T01:intron 60.0%
!! CAGCATCGGCAGGACAGCAT+CGG + Chr3:65894636-65894655 None:intergenic 60.0%
TCCCGCAACACCTCCTGAGG+AGG + Chr3:65893315-65893334 None:intergenic 65.0%
!! CCTCAGGAGGTGTTGCGGGA+GGG - Chr3:65893315-65893334 MsG0380015149.01.T01:intron 65.0%
!! GCAGGACAGCATCGGCACAC+AGG + Chr3:65894628-65894647 None:intergenic 65.0%
!! GCCTCCTCAGGAGGTGTTGC+GGG - Chr3:65893311-65893330 MsG0380015149.01.T01:intron 65.0%
!! TCCTCAGGAGGTGTTGCGGG+AGG - Chr3:65893314-65893333 MsG0380015149.01.T01:intron 65.0%
CCCTCCCGCAACACCTCCTG+AGG + Chr3:65893318-65893337 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 65893108 65899018 65893108 ID=MsG0380015149.01;Name=MsG0380015149.01
Chr3 mRNA 65893108 65899018 65893108 ID=MsG0380015149.01.T01;Parent=MsG0380015149.01;Name=MsG0380015149.01.T01;_AED=0.49;_eAED=0.60;_QI=113|0.37|0.55|1|1|1|9|117|371
Chr3 exon 65893108 65893225 65893108 ID=MsG0380015149.01.T01:exon:22899;Parent=MsG0380015149.01.T01
Chr3 exon 65893940 65894067 65893940 ID=MsG0380015149.01.T01:exon:22898;Parent=MsG0380015149.01.T01
Chr3 exon 65894163 65894279 65894163 ID=MsG0380015149.01.T01:exon:22897;Parent=MsG0380015149.01.T01
Chr3 exon 65896016 65896180 65896016 ID=MsG0380015149.01.T01:exon:22896;Parent=MsG0380015149.01.T01
Chr3 exon 65896278 65896333 65896278 ID=MsG0380015149.01.T01:exon:22895;Parent=MsG0380015149.01.T01
Chr3 exon 65897252 65897337 65897252 ID=MsG0380015149.01.T01:exon:22894;Parent=MsG0380015149.01.T01
Chr3 exon 65897586 65897661 65897586 ID=MsG0380015149.01.T01:exon:22893;Parent=MsG0380015149.01.T01
Chr3 exon 65898327 65898432 65898327 ID=MsG0380015149.01.T01:exon:22892;Parent=MsG0380015149.01.T01
Chr3 exon 65898525 65899018 65898525 ID=MsG0380015149.01.T01:exon:22891;Parent=MsG0380015149.01.T01
Chr3 five_prime_UTR 65898906 65899018 65898906 ID=MsG0380015149.01.T01:five_prime_utr;Parent=MsG0380015149.01.T01
Chr3 CDS 65898525 65898905 65898525 ID=MsG0380015149.01.T01:cds;Parent=MsG0380015149.01.T01
Chr3 CDS 65898327 65898432 65898327 ID=MsG0380015149.01.T01:cds;Parent=MsG0380015149.01.T01
Chr3 CDS 65897586 65897661 65897586 ID=MsG0380015149.01.T01:cds;Parent=MsG0380015149.01.T01
Chr3 CDS 65897252 65897337 65897252 ID=MsG0380015149.01.T01:cds;Parent=MsG0380015149.01.T01
Chr3 CDS 65896278 65896333 65896278 ID=MsG0380015149.01.T01:cds;Parent=MsG0380015149.01.T01
Chr3 CDS 65896016 65896180 65896016 ID=MsG0380015149.01.T01:cds;Parent=MsG0380015149.01.T01
Chr3 CDS 65894163 65894279 65894163 ID=MsG0380015149.01.T01:cds;Parent=MsG0380015149.01.T01
Chr3 CDS 65893940 65894067 65893940 ID=MsG0380015149.01.T01:cds;Parent=MsG0380015149.01.T01
Chr3 CDS 65893225 65893225 65893225 ID=MsG0380015149.01.T01:cds;Parent=MsG0380015149.01.T01
Chr3 three_prime_UTR 65893108 65893224 65893108 ID=MsG0380015149.01.T01:three_prime_utr;Parent=MsG0380015149.01.T01
Gene Sequence

>MsG0380015149.01.T01

ATGGGTTTTTCAAGAAAACACGTTACGAGTATCATTGCTTTATCACTGCTTGTGTTGTTATCATTAACATGGAACCTTAACTCAGTTTCAGCCTCCTCAGGAGGTGTTGCGGGAGGGAGTTTCTTCAAATCAGATTCTTCCTCATCCTCTAAATCATCCTCTGAATCATTCACAACTTATTCAAATTCTCCAAGTGTATGGGCGCAACATCATACCTATGTTACCCCTTATAGTGATGCTGATGCTGATGCTGATGATAAGGTTACAAATGATGAAGGAGGGTTCGTGTTTTTGTTCATTGCTGGCATAATCGGTATCATTTATTTTGTACGTCGTTGTACAGAAAACAATGATGATCCAGTTACTGTTCTCAAGCTTCAGGTTGGAATGTTGGATGAGATGGGATGTACATTACAAAGGGATCTAGCTAGGATTGCAGAAGCTGCTAATACACGGTATAAGGAAGGCGTGTGCTGTTTATTGAGAGATGGTTTGAGTGGAGGGAAGATTTCTCACTGCTTTCTCTATGAGTGGAGGTGGGATCCTATTAACTGTTTATACAGGTGTGATTTATGGCTGATTAGTGTTCACACTGTAGTGCCGTTGGGGCCTTATTTTAGTGCAGGACAGTTTCAGTTTTGGTTCTGTGAGACAATACAAACTTTGGATAAACATCATGGTTACTGTATAGCAGGATATTCATCTGTGGATCTTAAAAGGAGCCAGGAGGGTGGAGAAAAATGCTATAACCAACTATCAATTGAAGAAAGGGAAAAATTTGATGGAGAGACATTAGTTAACTTGAGCAACAACAATAAGACATGTATAAGAAGCCAGAGTTATGATAGGTTTAGCAATGAATATTCCACGGTAACAATATTGGTAGCTACTAGAGGAGCACATAAGCTACCTAACATGAAGGGAGCTGAAGATTTAAAGGAAGCTTTGCAAAAGCTTAAATCCCTTCTCTACTGGAGAGATCTATTAGCTGGTGAGGTATTATGGACCCCACAGAAAGAGGATGACACCCTTTCAGATGGAAAACTACTTAAAGATTACCCTCAGCTAGCCAAGTCTATGAAATATGAAATGAATAAACAAGTGGGTAATGCTTGA

Protein sequence

>MsG0380015149.01.T01

MGFSRKHVTSIIALSLLVLLSLTWNLNSVSASSGGVAGGSFFKSDSSSSSKSSSESFTTYSNSPSVWAQHHTYVTPYSDADADADDKVTNDEGGFVFLFIAGIIGIIYFVRRCTENNDDPVTVLKLQVGMLDEMGCTLQRDLARIAEAANTRYKEGVCCLLRDGLSGGKISHCFLYEWRWDPINCLYRCDLWLISVHTVVPLGPYFSAGQFQFWFCETIQTLDKHHGYCIAGYSSVDLKRSQEGGEKCYNQLSIEEREKFDGETLVNLSNNNKTCIRSQSYDRFSNEYSTVTILVATRGAHKLPNMKGAEDLKEALQKLKSLLYWRDLLAGEVLWTPQKEDDTLSDGKLLKDYPQLAKSMKYEMNKQVGNA*