Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024129.01.T01 | 6BQ2_A | 75.298 | 336 | 21 | 4 | 1 | 282 | 4 | 331 | 1.27E-173 | 493 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024129.01.T01 | Q9S7X6 | 62.996 | 227 | 84 | 0 | 53 | 279 | 107 | 333 | 4.61E-108 | 319 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024129.01.T01 | G7K2D1 | 75.298 | 336 | 21 | 4 | 1 | 282 | 1 | 328 | 1.50e-173 | 491 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047814.01 | MsG0580024129.01 | 0.819321 | 1.235059e-52 | 9.472350e-50 |
| MsG0080047974.01 | MsG0580024129.01 | 0.825799 | 3.848912e-54 | 3.544683e-51 |
| MsG0080049140.01 | MsG0580024129.01 | 0.837970 | 3.796020e-57 | 5.012663e-54 |
| MsG0180000373.01 | MsG0580024129.01 | 0.805150 | 1.534148e-49 | 8.056681e-47 |
| MsG0180003361.01 | MsG0580024129.01 | 0.837155 | 6.141662e-57 | 7.908653e-54 |
| MsG0180003920.01 | MsG0580024129.01 | 0.816861 | 4.445214e-52 | 3.186501e-49 |
| MsG0180004099.01 | MsG0580024129.01 | 0.832698 | 8.148883e-56 | 9.179131e-53 |
| MsG0180004754.01 | MsG0580024129.01 | 0.846782 | 1.749486e-59 | 3.044983e-56 |
| MsG0180004970.01 | MsG0580024129.01 | 0.813284 | 2.767006e-51 | 1.799351e-48 |
| MsG0280010779.01 | MsG0580024129.01 | 0.844836 | 5.906531e-59 | 9.655916e-56 |
| MsG0280011014.01 | MsG0580024129.01 | 0.829569 | 4.783619e-55 | 4.914437e-52 |
| MsG0280011124.01 | MsG0580024129.01 | 0.809095 | 2.241794e-50 | 1.304230e-47 |
| MsG0280011258.01 | MsG0580024129.01 | 0.839918 | 1.188588e-57 | 1.665972e-54 |
| MsG0280011282.01 | MsG0580024129.01 | 0.854539 | 1.150911e-61 | 2.578988e-58 |
| MsG0380012471.01 | MsG0580024129.01 | 0.852315 | 5.002595e-61 | 1.041286e-57 |
| MsG0380013475.01 | MsG0580024129.01 | 0.810181 | 1.309894e-50 | 7.842316e-48 |
| MsG0380014754.01 | MsG0580024129.01 | 0.807639 | 4.580896e-50 | 2.564802e-47 |
| MsG0480018919.01 | MsG0580024129.01 | 0.803243 | 3.825615e-49 | 1.912834e-46 |
| MsG0480019635.01 | MsG0580024129.01 | 0.815492 | 8.990683e-52 | 6.208261e-49 |
| MsG0480019710.01 | MsG0580024129.01 | 0.812918 | 3.329235e-51 | 2.143623e-48 |
| MsG0480019922.01 | MsG0580024129.01 | 0.812512 | 4.083868e-51 | 2.601763e-48 |
| MsG0480020495.01 | MsG0580024129.01 | 0.816237 | 6.134260e-52 | 4.322821e-49 |
| MsG0480021350.01 | MsG0580024129.01 | 0.800008 | 1.763210e-48 | 8.120684e-46 |
| MsG0480022325.01 | MsG0580024129.01 | 0.869700 | 2.543223e-66 | 9.633928e-63 |
| MsG0480022620.01 | MsG0580024129.01 | 0.852636 | 4.054717e-61 | 8.526452e-58 |
| MsG0480023832.01 | MsG0580024129.01 | 0.834891 | 2.305052e-56 | 2.772689e-53 |
| MsG0580024129.01 | MsG0580024489.01 | 0.857220 | 1.893690e-62 | 4.639901e-59 |
| MsG0580024129.01 | MsG0580024758.01 | 0.806732 | 7.132220e-50 | 3.900424e-47 |
| MsG0580024129.01 | MsG0580025766.01 | 0.812139 | 4.927143e-51 | 3.107628e-48 |
| MsG0580024129.01 | MsG0580026089.01 | 0.822112 | 2.819648e-53 | 2.338111e-50 |
| MsG0580024129.01 | MsG0580026593.01 | 0.857304 | 1.788388e-62 | 4.393927e-59 |
| MsG0580024129.01 | MsG0580026610.01 | 0.821600 | 3.704108e-53 | 3.027065e-50 |
| MsG0580024129.01 | MsG0580027091.01 | 0.830669 | 2.578827e-55 | 2.735543e-52 |
| MsG0580024129.01 | MsG0580027208.01 | 0.808014 | 3.813304e-50 | 2.156118e-47 |
| MsG0580024129.01 | MsG0580027431.01 | 0.847250 | 1.302307e-59 | 2.300928e-56 |
| MsG0580024129.01 | MsG0580028060.01 | 0.820082 | 8.278563e-53 | 6.486683e-50 |
| MsG0580024129.01 | MsG0580028176.01 | 0.814163 | 1.772258e-51 | 1.180305e-48 |
| MsG0580024129.01 | MsG0580029640.01 | 0.830955 | 2.193963e-55 | 2.346934e-52 |
| MsG0580024129.01 | MsG0680031549.01 | 0.840719 | 7.340428e-58 | 1.054744e-54 |
| MsG0580024129.01 | MsG0680034598.01 | 0.856555 | 2.973392e-62 | 7.124783e-59 |
| MsG0580024129.01 | MsG0680035526.01 | 0.812078 | 5.080353e-51 | 3.198931e-48 |
| MsG0580024129.01 | MsG0780036147.01 | 0.814743 | 1.318679e-51 | 8.921236e-49 |
| MsG0580024129.01 | MsG0780036477.01 | 0.803528 | 3.338890e-49 | 1.681850e-46 |
| MsG0580024129.01 | MsG0780036663.01 | 0.809353 | 1.972850e-50 | 1.155773e-47 |
| MsG0580024129.01 | MsG0780036752.01 | 0.854853 | 9.330189e-62 | 2.112736e-58 |
| MsG0580024129.01 | MsG0780036815.01 | 0.859100 | 5.222576e-63 | 1.363167e-59 |
| MsG0580024129.01 | MsG0780036823.01 | 0.803568 | 3.277006e-49 | 1.652362e-46 |
| MsG0580024129.01 | MsG0780038424.01 | 0.841988 | 3.403032e-58 | 5.086964e-55 |
| MsG0580024129.01 | MsG0780039137.01 | 0.849253 | 3.641062e-60 | 6.862340e-57 |
| MsG0580024129.01 | MsG0780040307.01 | 0.801908 | 7.212650e-49 | 3.485771e-46 |
| MsG0580024129.01 | MsG0780040482.01 | 0.818062 | 2.384028e-52 | 1.766101e-49 |
| MsG0580024129.01 | MsG0780040896.01 | 0.823058 | 1.699339e-53 | 1.447657e-50 |
| MsG0580024129.01 | MsG0780040926.01 | 0.806945 | 6.427130e-50 | 3.534255e-47 |
| MsG0580024129.01 | MsG0780041063.01 | 0.826798 | 2.226240e-54 | 2.109339e-51 |
| MsG0580024129.01 | MsG0880041860.01 | 0.829125 | 6.132389e-55 | 6.218886e-52 |
| MsG0580024129.01 | MsG0880041896.01 | 0.800977 | 1.118674e-48 | 5.280962e-46 |
| MsG0580024129.01 | MsG0880041986.01 | 0.813761 | 2.173666e-51 | 1.431942e-48 |
| MsG0580024129.01 | MsG0880042961.01 | 0.863725 | 2.028354e-64 | 6.212352e-61 |
| MsG0580024129.01 | MsG0880043516.01 | 0.804930 | 1.705230e-49 | 8.905248e-47 |
| MsG0580024129.01 | MsG0880044782.01 | 0.832280 | 1.034293e-55 | 1.150522e-52 |
| MsG0580024129.01 | MsG0880046012.01 | 0.820318 | 7.305959e-53 | 5.761639e-50 |
| MsG0580024129.01 | MsG0880047666.01 | 0.804162 | 2.466045e-49 | 1.262498e-46 |
| MsG0380015548.01 | MsG0580024129.01 | 0.850346 | 1.801731e-60 | 3.518436e-57 |
| MsG0380015677.01 | MsG0580024129.01 | 0.853062 | 3.063303e-61 | 6.535090e-58 |
| MsG0380016553.01 | MsG0580024129.01 | 0.813113 | 3.016765e-51 | 1.952554e-48 |
| MsG0380016703.01 | MsG0580024129.01 | 0.806259 | 8.972374e-50 | 4.847988e-47 |
| MsG0380016765.01 | MsG0580024129.01 | 0.820662 | 6.092762e-53 | 4.850575e-50 |
| MsG0380016994.01 | MsG0580024129.01 | 0.868986 | 4.340627e-66 | 1.601918e-62 |
| MsG0380017049.01 | MsG0580024129.01 | 0.800515 | 1.390323e-48 | 6.486290e-46 |
| MsG0380017159.01 | MsG0580024129.01 | 0.827371 | 1.623152e-54 | 1.564204e-51 |
| MsG0380017239.01 | MsG0580024129.01 | 0.803498 | 3.387424e-49 | 1.704923e-46 |
| MsG0480018313.01 | MsG0580024129.01 | 0.812400 | 4.321557e-51 | 2.745087e-48 |
| MsG0480018397.01 | MsG0580024129.01 | 0.831854 | 1.317950e-55 | 1.448144e-52 |
| MsG0280007609.01 | MsG0580024129.01 | 0.809132 | 2.200968e-50 | 1.281770e-47 |
| MsG0280008280.01 | MsG0580024129.01 | 0.858923 | 5.901716e-63 | 1.531372e-59 |
| MsG0280008679.01 | MsG0580024129.01 | 0.820993 | 5.113615e-53 | 4.109498e-50 |
| MsG0280009493.01 | MsG0580024129.01 | 0.835362 | 1.754054e-56 | 2.140267e-53 |
| MsG0280009514.01 | MsG0580024129.01 | 0.848326 | 6.581778e-60 | 1.203475e-56 |
| MsG0280009794.01 | MsG0580024129.01 | 0.847441 | 1.153973e-59 | 2.051368e-56 |
| MsG0280010489.01 | MsG0580024129.01 | 0.815352 | 9.659458e-52 | 6.644089e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024129.01.T01 | MTR_5g006140 | 75.298 | 336 | 21 | 4 | 1 | 282 | 1 | 328 | 3.82e-177 | 491 |
| MsG0580024129.01.T01 | MTR_5g006140 | 69.403 | 268 | 20 | 4 | 1 | 214 | 1 | 260 | 1.45e-124 | 356 |
| MsG0580024129.01.T01 | MTR_1g015300 | 65.066 | 229 | 80 | 0 | 51 | 279 | 104 | 332 | 2.21e-110 | 323 |
| MsG0580024129.01.T01 | MTR_3g104960 | 60.352 | 227 | 81 | 1 | 53 | 279 | 108 | 325 | 5.54e-98 | 291 |
| MsG0580024129.01.T01 | MTR_8g063940 | 34.574 | 188 | 113 | 8 | 31 | 215 | 108 | 288 | 1.79e-26 | 106 |
| MsG0580024129.01.T01 | MTR_5g034470 | 35.106 | 188 | 112 | 8 | 31 | 215 | 109 | 289 | 3.51e-25 | 102 |
| MsG0580024129.01.T01 | MTR_5g034470 | 35.106 | 188 | 112 | 8 | 31 | 215 | 109 | 289 | 4.92e-25 | 102 |
| MsG0580024129.01.T01 | MTR_3g091090 | 31.383 | 188 | 119 | 8 | 31 | 215 | 123 | 303 | 1.54e-16 | 79.0 |
| MsG0580024129.01.T01 | MTR_1g028360 | 30.769 | 195 | 124 | 8 | 31 | 221 | 128 | 315 | 6.23e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024129.01.T01 | AT5G19530 | 62.996 | 227 | 84 | 0 | 53 | 279 | 100 | 326 | 4.07e-109 | 319 |
| MsG0580024129.01.T01 | AT5G19530 | 62.996 | 227 | 84 | 0 | 53 | 279 | 107 | 333 | 4.70e-109 | 319 |
| MsG0580024129.01.T01 | AT1G23820 | 34.225 | 187 | 113 | 8 | 31 | 214 | 145 | 324 | 9.25e-27 | 107 |
| MsG0580024129.01.T01 | AT1G70310 | 32.979 | 188 | 116 | 8 | 31 | 215 | 105 | 285 | 1.84e-25 | 103 |
| MsG0580024129.01.T01 | AT1G23820 | 33.511 | 188 | 115 | 8 | 31 | 215 | 101 | 281 | 1.96e-25 | 103 |
| MsG0580024129.01.T01 | AT5G53120 | 33.690 | 187 | 115 | 7 | 31 | 215 | 124 | 303 | 4.00e-18 | 83.6 |
| MsG0580024129.01.T01 | AT5G53120 | 33.690 | 187 | 115 | 7 | 31 | 215 | 124 | 303 | 4.00e-18 | 83.6 |
| MsG0580024129.01.T01 | AT5G53120 | 33.690 | 187 | 115 | 7 | 31 | 215 | 124 | 303 | 4.00e-18 | 83.6 |
| MsG0580024129.01.T01 | AT5G53120 | 33.690 | 187 | 115 | 7 | 31 | 215 | 124 | 303 | 4.00e-18 | 83.6 |
| MsG0580024129.01.T01 | AT5G53120 | 33.690 | 187 | 115 | 7 | 31 | 215 | 124 | 303 | 4.00e-18 | 83.6 |
| MsG0580024129.01.T01 | AT5G53120 | 33.690 | 187 | 115 | 7 | 31 | 215 | 141 | 320 | 5.36e-18 | 83.6 |
| MsG0580024129.01.T01 | AT5G53120 | 32.237 | 152 | 96 | 5 | 66 | 215 | 184 | 330 | 4.21e-15 | 75.1 |
Find 90 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCATCTTATGCTGATATT+TGG | 0.118417 | 5:-1197195 | MsG0580024129.01.T01:CDS |
| TCCTATCTTGTGCTTCTATT+TGG | 0.160025 | 5:-1196555 | MsG0580024129.01.T01:three_prime_UTR |
| CCCATCTTATGCTGATATTT+GGG | 0.239153 | 5:-1197194 | MsG0580024129.01.T01:CDS |
| GGGATTAGCAATGGCATTAA+TGG | 0.250297 | 5:-1199083 | MsG0580024129.01.T01:CDS |
| ATTCCACCTTTCTTCAGTTT+TGG | 0.286598 | 5:+1197542 | None:intergenic |
| AGTAGTTTGTTGTGATGTTA+TGG | 0.332004 | 5:+1199200 | None:intergenic |
| TAGCAAGGACCTCCTTCTAT+TGG | 0.333191 | 5:+1197605 | None:intergenic |
| ATATTATACCCTCCCTAGTT+AGG | 0.348801 | 5:+1199408 | None:intergenic |
| CTTATGCAGGCAGGGCCTGC+TGG | 0.371312 | 5:-1197412 | MsG0580024129.01.T01:intron |
| ATTCACCACCTAATGGTTAT+AGG | 0.379554 | 5:-1199043 | MsG0580024129.01.T01:CDS |
| TCATTTCTTACTATTACTTT+CGG | 0.384945 | 5:+1199445 | None:intergenic |
| TGAGAGCAAAGCACCATCTA+AGG | 0.385224 | 5:+1198985 | None:intergenic |
| TGATGTAATAGTTGGTGATT+TGG | 0.391967 | 5:-1197633 | MsG0580024129.01.T01:CDS |
| GTAGCTTACACAAATGGAAA+TGG | 0.402653 | 5:-1199104 | MsG0580024129.01.T01:CDS |
| GATGGGATATGAGCTGAATA+AGG | 0.405736 | 5:+1197211 | None:intergenic |
| GATGGTGCTTTGCTCTCAAT+AGG | 0.407800 | 5:-1198980 | MsG0580024129.01.T01:intron |
| CAACTCTTCCTATAACCATT+AGG | 0.423167 | 5:+1199035 | None:intergenic |
| ACACTTGAAAACTTGTCTTA+AGG | 0.423360 | 5:+1197348 | None:intergenic |
| ATATATTAGAGTAGTAGTAT+AGG | 0.425521 | 5:+1196520 | None:intergenic |
| AAGCAAAATAAAATCCTCAT+TGG | 0.425731 | 5:+1199334 | None:intergenic |
| GAAGAGAATAGATATCTTGA+TGG | 0.427990 | 5:-1196996 | MsG0580024129.01.T01:CDS |
| TCCAAATAGAAGCACAAGAT+AGG | 0.430681 | 5:+1196554 | None:intergenic |
| GGAGCAGCTAGGTTCATATA+TGG | 0.430922 | 5:-1196802 | MsG0580024129.01.T01:CDS |
| GGAAGTAATTATTGATAGAC+GGG | 0.445312 | 5:+1199275 | None:intergenic |
| GATAAGATACGGTCCTAACT+AGG | 0.447008 | 5:-1199421 | MsG0580024129.01.T01:five_prime_UTR |
| TATAAGAAGGAGAAATGAAA+GGG | 0.454430 | 5:+1199254 | None:intergenic |
| AGTGAGCTCATAGAAGTCTT+TGG | 0.456509 | 5:+1197571 | None:intergenic |
| GAGAGGTATGATGTAATAGT+TGG | 0.464597 | 5:-1197641 | MsG0580024129.01.T01:CDS |
| CCCCAAATATCAGCATAAGA+TGG | 0.466906 | 5:+1197193 | None:intergenic |
| TGATATTTGGGGATGGGTCC+TGG | 0.469083 | 5:-1197182 | MsG0580024129.01.T01:intron |
| TATAACCATTAGGTGGTGAA+TGG | 0.470001 | 5:+1199045 | None:intergenic |
| ATGAGAGATCGTATATAAGA+AGG | 0.473033 | 5:+1199241 | None:intergenic |
| GGTGAAGTAGCTTACACAAA+TGG | 0.475512 | 5:-1199110 | MsG0580024129.01.T01:CDS |
| CGACTTCAAGTCTCGAATCA+TGG | 0.476438 | 5:+1197794 | None:intergenic |
| GCTTGTAAGTGTTGTATCAA+TGG | 0.478023 | 5:-1196590 | MsG0580024129.01.T01:three_prime_UTR |
| TTATGCTGATATTTGGGGAT+GGG | 0.480221 | 5:-1197188 | MsG0580024129.01.T01:CDS |
| AAAAGCCATTCACCACCTAA+TGG | 0.481909 | 5:-1199050 | MsG0580024129.01.T01:CDS |
| GATTTGGCTGATCCAATAGA+AGG | 0.493154 | 5:-1197617 | MsG0580024129.01.T01:CDS |
| TTTATTATGGGAGGAGGAGA+AGG | 0.494945 | 5:-1198013 | MsG0580024129.01.T01:CDS |
| TAGCTTACACAAATGGAAAT+GGG | 0.497182 | 5:-1199103 | MsG0580024129.01.T01:CDS |
| GGGAAGTAATTATTGATAGA+CGG | 0.499854 | 5:+1199274 | None:intergenic |
| CTTATGCTGATATTTGGGGA+TGG | 0.502652 | 5:-1197189 | MsG0580024129.01.T01:CDS |
| AGATTGAAGAGAACCTTAGA+TGG | 0.508186 | 5:-1198998 | MsG0580024129.01.T01:CDS |
| TGTTACAGAGCTGAACTAGA+AGG | 0.509621 | 5:-1197671 | MsG0580024129.01.T01:intron |
| TTCTTCTTAGTTGTCATCAA+AGG | 0.517364 | 5:-1199143 | MsG0580024129.01.T01:five_prime_UTR |
| ATGGTTATAGGAAGAGTTGT+TGG | 0.520011 | 5:-1199031 | MsG0580024129.01.T01:CDS |
| CCCAAATATCAGCATAAGAT+GGG | 0.522916 | 5:+1197194 | None:intergenic |
| CTCAAGCCAAAACTGAAGAA+AGG | 0.529230 | 5:-1197548 | MsG0580024129.01.T01:CDS |
| AAAGAAAGTGAAGAGCAGAA+AGG | 0.533288 | 5:+1196662 | None:intergenic |
| TATCTAATTCTTCAGCACTA+AGG | 0.537029 | 5:+1197042 | None:intergenic |
| CTACTGCAAGGGAACTGCTC+AGG | 0.545339 | 5:-1197988 | MsG0580024129.01.T01:CDS |
| ACAGGCTTCAGATTCTCCAT+TGG | 0.548267 | 5:-1197066 | MsG0580024129.01.T01:intron |
| GTTTGTTGTGATGTTATGGA+TGG | 0.550634 | 5:+1199204 | None:intergenic |
| GTGTGGCTGAATATTCCAGC+AGG | 0.556371 | 5:+1197397 | None:intergenic |
| CCATCTTATGCTGATATTTG+GGG | 0.559813 | 5:-1197193 | MsG0580024129.01.T01:CDS |
| TAAGAAATGAAGATAAGATA+CGG | 0.567425 | 5:-1199432 | MsG0580024129.01.T01:five_prime_UTR |
| AAGCACAAGATAGGAACCAT+TGG | 0.568399 | 5:+1196563 | None:intergenic |
| ATATAAGAAGGAGAAATGAA+AGG | 0.569546 | 5:+1199253 | None:intergenic |
| TCTTCAGCACTAAGGTCCAA+TGG | 0.578062 | 5:+1197050 | None:intergenic |
| TTGGTGTAAAGTTTATAGCA+AGG | 0.578661 | 5:+1197590 | None:intergenic |
| GCTAGGTTCATATATGGTCA+TGG | 0.584533 | 5:-1196796 | MsG0580024129.01.T01:CDS |
| ATAAGATACGGTCCTAACTA+GGG | 0.584903 | 5:-1199420 | MsG0580024129.01.T01:five_prime_UTR |
| AGGTGGAATATTTGTGACAC+AGG | 0.588611 | 5:-1197528 | MsG0580024129.01.T01:intron |
| TTGTATCAATGGACAACCAA+TGG | 0.592903 | 5:-1196579 | MsG0580024129.01.T01:three_prime_UTR |
| AGTGGTGAAAGTACAAGCCA+AGG | 0.593535 | 5:+1196622 | None:intergenic |
| AATACATTACACACTGCGTG+CGG | 0.594705 | 5:+1199371 | None:intergenic |
| ATACATTACACACTGCGTGC+GGG | 0.595018 | 5:+1199372 | None:intergenic |
| AATGGAAATGGGATTAGCAA+TGG | 0.596415 | 5:-1199092 | MsG0580024129.01.T01:CDS |
| AACTAGAAGGCAAAGAAGAG+AGG | 0.603737 | 5:-1197658 | MsG0580024129.01.T01:CDS |
| GAGGAGAAGGATCTACTGCA+AGG | 0.605519 | 5:-1198000 | MsG0580024129.01.T01:CDS |
| GTGGTGAAAGTACAAGCCAA+GGG | 0.607505 | 5:+1196623 | None:intergenic |
| ATCATACTTAGTTGTAAACA+AGG | 0.614887 | 5:-1197824 | MsG0580024129.01.T01:CDS |
| AAGCCAAAACTGAAGAAAGG+TGG | 0.618874 | 5:-1197545 | MsG0580024129.01.T01:CDS |
| AGGAGAAGGATCTACTGCAA+GGG | 0.631605 | 5:-1197999 | MsG0580024129.01.T01:CDS |
| GATACGGTCCTAACTAGGGA+GGG | 0.633478 | 5:-1199416 | MsG0580024129.01.T01:five_prime_UTR |
| GTACTTTACGAAAACCAATG+AGG | 0.636929 | 5:-1199348 | MsG0580024129.01.T01:five_prime_UTR |
| CACACAATGCAAGTTAACAA+AGG | 0.637771 | 5:-1196721 | MsG0580024129.01.T01:three_prime_UTR |
| ATTAGCAATGGCATTAATGG+AGG | 0.639499 | 5:-1199080 | MsG0580024129.01.T01:CDS |
| AGACGGGAAATCTAGCAAAG+TGG | 0.642104 | 5:+1199291 | None:intergenic |
| AGATACGGTCCTAACTAGGG+AGG | 0.644379 | 5:-1199417 | MsG0580024129.01.T01:five_prime_UTR |
| GAGACTCATGTATACACAGA+GGG | 0.651343 | 5:-1196823 | MsG0580024129.01.T01:CDS |
| TATACACAGAGGGAGCAGCT+AGG | 0.656967 | 5:-1196813 | MsG0580024129.01.T01:CDS |
| AAGTCGTCATCAACGACGCG+AGG | 0.657834 | 5:-1197777 | MsG0580024129.01.T01:intron |
| TAGATATCAGAATGAGACAG+AGG | 0.660960 | 5:-1197025 | MsG0580024129.01.T01:CDS |
| CTCTTCCTATAACCATTAGG+TGG | 0.663434 | 5:+1199038 | None:intergenic |
| TTGGCTGATCCAATAGAAGG+AGG | 0.689346 | 5:-1197614 | MsG0580024129.01.T01:CDS |
| TGTAATGTGTGACATTGATG+AGG | 0.706772 | 5:-1197945 | MsG0580024129.01.T01:intron |
| TACATGAGAAAACTTCTGTG+TGG | 0.723090 | 5:+1197380 | None:intergenic |
| TGGTGAAAGTACAAGCCAAG+GGG | 0.731603 | 5:+1196624 | None:intergenic |
| TGAGACTCATGTATACACAG+AGG | 0.767768 | 5:-1196824 | MsG0580024129.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTTATGTAAACTATAATA+TGG | + | Chr5:1197169-1197188 | None:intergenic | 10.0% |
| !! | ATTAATTTATTGATGTTTGA+TGG | - | Chr5:1198143-1198162 | MsG0580024129.01.T01:intron | 15.0% |
| !! | CAATAATATATAAATTTACC+AGG | + | Chr5:1198855-1198874 | None:intergenic | 15.0% |
| !! | TATGTATTAAAAACTTGATA+AGG | - | Chr5:1198542-1198561 | MsG0580024129.01.T01:intron | 15.0% |
| !! | TGATTATAACAATAAGATTA+TGG | + | Chr5:1199116-1199135 | None:intergenic | 15.0% |
| !!! | AATACTTTTCTTATAAGTAA+AGG | + | Chr5:1197733-1197752 | None:intergenic | 15.0% |
| !!! | CCAAAAAATGTTTTTATTAT+GGG | - | Chr5:1197991-1198010 | MsG0580024129.01.T01:CDS | 15.0% |
| !! | AAACATAGAATACTTAGATT+TGG | + | Chr5:1198914-1198933 | None:intergenic | 20.0% |
| !! | ATATATTAGAGTAGTAGTAT+AGG | + | Chr5:1199499-1199518 | None:intergenic | 20.0% |
| !! | CTAGCTAAAAAAACAAAAAA+TGG | + | Chr5:1197409-1197428 | None:intergenic | 20.0% |
| !! | TAACATAGTAGATAATTAAG+TGG | + | Chr5:1197775-1197794 | None:intergenic | 20.0% |
| !! | TAAGAAATGAAGATAAGATA+CGG | - | Chr5:1196584-1196603 | MsG0580024129.01.T01:three_prime_UTR | 20.0% |
| !! | TCATTTCTTACTATTACTTT+CGG | + | Chr5:1196574-1196593 | None:intergenic | 20.0% |
| !!! | AAAAATGTTTTTATTATGGG+AGG | - | Chr5:1197994-1198013 | MsG0580024129.01.T01:CDS | 20.0% |
| !!! | ACAAAAAATGGACAAAATTT+TGG | + | Chr5:1197397-1197416 | None:intergenic | 20.0% |
| !!! | ACTTTTTATTCTCTTTGTTT+TGG | - | Chr5:1197605-1197624 | MsG0580024129.01.T01:CDS | 20.0% |
| !!! | CCCATAATAAAAACATTTTT+TGG | + | Chr5:1197994-1198013 | None:intergenic | 20.0% |
| !!! | GCCAAAAAATGTTTTTATTA+TGG | - | Chr5:1197990-1198009 | MsG0580024129.01.T01:CDS | 20.0% |
| !!! | TATTGTTATTATTCTTATGC+AGG | - | Chr5:1198591-1198610 | MsG0580024129.01.T01:intron | 20.0% |
| !!! | TATTTTTCATTCCATTTTCA+AGG | - | Chr5:1197968-1197987 | MsG0580024129.01.T01:CDS | 20.0% |
| !!! | TTTTTGTTTACAATTTCAAG+TGG | - | Chr5:1198115-1198134 | MsG0580024129.01.T01:intron | 20.0% |
| ! | AAGCAAAATAAAATCCTCAT+TGG | + | Chr5:1196685-1196704 | None:intergenic | 25.0% |
| ! | ATATAAGAAGGAGAAATGAA+AGG | + | Chr5:1196766-1196785 | None:intergenic | 25.0% |
| ! | ATCATACTTAGTTGTAAACA+AGG | - | Chr5:1198192-1198211 | MsG0580024129.01.T01:intron | 25.0% |
| ! | CTACTATCTTCCTTTATATA+TGG | - | Chr5:1197215-1197234 | MsG0580024129.01.T01:CDS | 25.0% |
| ! | TATAAGAAGGAGAAATGAAA+GGG | + | Chr5:1196765-1196784 | None:intergenic | 25.0% |
| !! | ATACTCTTTTTGCCTTTATT+TGG | - | Chr5:1197459-1197478 | MsG0580024129.01.T01:intron | 25.0% |
| !!! | TTCATGTTGTTTCTTTTAGA+AGG | - | Chr5:1197262-1197281 | MsG0580024129.01.T01:intron | 25.0% |
| !!! | TTTATTCTCTTTGTTTTGGT+GGG | - | Chr5:1197609-1197628 | MsG0580024129.01.T01:CDS | 25.0% |
| !!! | TTTTATTCTCTTTGTTTTGG+TGG | - | Chr5:1197608-1197627 | MsG0580024129.01.T01:CDS | 25.0% |
| !!! | TTTTGTTTTGATTTGAAGCT+TGG | + | Chr5:1199259-1199278 | None:intergenic | 25.0% |
| ACACTTGAAAACTTGTCTTA+AGG | + | Chr5:1198671-1198690 | None:intergenic | 30.0% | |
| AGTAAAGGATATACATAGGA+TGG | + | Chr5:1197897-1197916 | None:intergenic | 30.0% | |
| ATGAAAAAATGTTCAAGTGC+TGG | + | Chr5:1197944-1197963 | None:intergenic | 30.0% | |
| ATGAGAGATCGTATATAAGA+AGG | + | Chr5:1196778-1196797 | None:intergenic | 30.0% | |
| CAATCATTGAAGAAGAGTAA+AGG | + | Chr5:1197912-1197931 | None:intergenic | 30.0% | |
| CATTGAATGATACTATTGAC+AGG | - | Chr5:1199161-1199180 | MsG0580024129.01.T01:five_prime_UTR | 30.0% | |
| CTATCTTCCTTTATATATGG+CGG | - | Chr5:1197218-1197237 | MsG0580024129.01.T01:CDS | 30.0% | |
| GAAGAGAATAGATATCTTGA+TGG | - | Chr5:1199020-1199039 | MsG0580024129.01.T01:CDS | 30.0% | |
| GAAGAGTAAAGGATATACAT+AGG | + | Chr5:1197901-1197920 | None:intergenic | 30.0% | |
| GGAAGTAATTATTGATAGAC+GGG | + | Chr5:1196744-1196763 | None:intergenic | 30.0% | |
| GGGAAGTAATTATTGATAGA+CGG | + | Chr5:1196745-1196764 | None:intergenic | 30.0% | |
| GTCATCAAAGGAAAAAAGAT+GGG | - | Chr5:1196885-1196904 | MsG0580024129.01.T01:intron | 30.0% | |
| TACTTTCACCACTCAAAAAA+AGG | - | Chr5:1199404-1199423 | MsG0580024129.01.T01:five_prime_UTR | 30.0% | |
| TAGCTTACACAAATGGAAAT+GGG | - | Chr5:1196913-1196932 | MsG0580024129.01.T01:intron | 30.0% | |
| TATATAAGAACCTTGCCAAA+GGG | + | Chr5:1197697-1197716 | None:intergenic | 30.0% | |
| TATCTAATTCTTCAGCACTA+AGG | + | Chr5:1198977-1198996 | None:intergenic | 30.0% | |
| TGAAAAGATAATAGAAGCCA+AGG | - | Chr5:1197289-1197308 | MsG0580024129.01.T01:intron | 30.0% | |
| TGTCATCAAAGGAAAAAAGA+TGG | - | Chr5:1196884-1196903 | MsG0580024129.01.T01:intron | 30.0% | |
| TTATATAAGAACCTTGCCAA+AGG | + | Chr5:1197698-1197717 | None:intergenic | 30.0% | |
| TTATTATTCTTATGCAGGCA+GGG | - | Chr5:1198596-1198615 | MsG0580024129.01.T01:intron | 30.0% | |
| TTCTTCTTAGTTGTCATCAA+AGG | - | Chr5:1196873-1196892 | MsG0580024129.01.T01:intron | 30.0% | |
| TTGGTGTAAAGTTTATAGCA+AGG | + | Chr5:1198429-1198448 | None:intergenic | 30.0% | |
| ! | ACTATGTTACATACTTTTGC+AGG | - | Chr5:1197786-1197805 | MsG0580024129.01.T01:CDS | 30.0% |
| ! | CCTTTATTTGGCTATGAAAA+AGG | - | Chr5:1197471-1197490 | MsG0580024129.01.T01:intron | 30.0% |
| ! | GATTAATTTGATATTACGCG+AGG | - | Chr5:1198274-1198293 | MsG0580024129.01.T01:intron | 30.0% |
| !! | AATGTTTTTATTATGGGAGG+AGG | - | Chr5:1197997-1198016 | MsG0580024129.01.T01:CDS | 30.0% |
| !! | AGTAGTTTGTTGTGATGTTA+TGG | + | Chr5:1196819-1196838 | None:intergenic | 30.0% |
| !! | CCTTTTTCATAGCCAAATAA+AGG | + | Chr5:1197474-1197493 | None:intergenic | 30.0% |
| !! | TGATGTAATAGTTGGTGATT+TGG | - | Chr5:1198383-1198402 | MsG0580024129.01.T01:intron | 30.0% |
| !!! | ACATTTTTTGGCCTTGAAAA+TGG | + | Chr5:1197982-1198001 | None:intergenic | 30.0% |
| !!! | GTATTCTATGTTTTTTCCCT+TGG | - | Chr5:1198921-1198940 | MsG0580024129.01.T01:intron | 30.0% |
| !!! | TTATTCTCTTTGTTTTGGTG+GGG | - | Chr5:1197610-1197629 | MsG0580024129.01.T01:CDS | 30.0% |
| !!! | TTTCTTCTTTTTTTACCCCT+TGG | - | Chr5:1199377-1199396 | MsG0580024129.01.T01:five_prime_UTR | 30.0% |
| AAAGAAAGTGAAGAGCAGAA+AGG | + | Chr5:1199357-1199376 | None:intergenic | 35.0% | |
| AGATTGAAGAGAACCTTAGA+TGG | - | Chr5:1197018-1197037 | MsG0580024129.01.T01:CDS | 35.0% | |
| ATAAGATACGGTCCTAACTA+GGG | - | Chr5:1196596-1196615 | MsG0580024129.01.T01:three_prime_UTR | 35.0% | |
| ATATTATACCCTCCCTAGTT+AGG | + | Chr5:1196611-1196630 | None:intergenic | 35.0% | |
| ATGGTTATAGGAAGAGTTGT+TGG | - | Chr5:1196985-1197004 | MsG0580024129.01.T01:CDS | 35.0% | |
| ATTAGCAATGGCATTAATGG+AGG | - | Chr5:1196936-1196955 | MsG0580024129.01.T01:intron | 35.0% | |
| ATTCACCACCTAATGGTTAT+AGG | - | Chr5:1196973-1196992 | MsG0580024129.01.T01:CDS | 35.0% | |
| CAACTCTTCCTATAACCATT+AGG | + | Chr5:1196984-1197003 | None:intergenic | 35.0% | |
| CACACAATGCAAGTTAACAA+AGG | - | Chr5:1199295-1199314 | MsG0580024129.01.T01:five_prime_UTR | 35.0% | |
| CCATCTTATGCTGATATTTG+GGG | - | Chr5:1198823-1198842 | MsG0580024129.01.T01:intron | 35.0% | |
| CCCAAATATCAGCATAAGAT+GGG | + | Chr5:1198825-1198844 | None:intergenic | 35.0% | |
| CCCATCTTATGCTGATATTT+GGG | - | Chr5:1198822-1198841 | MsG0580024129.01.T01:intron | 35.0% | |
| GTACTTTACGAAAACCAATG+AGG | - | Chr5:1196668-1196687 | MsG0580024129.01.T01:three_prime_UTR | 35.0% | |
| GTAGCTTACACAAATGGAAA+TGG | - | Chr5:1196912-1196931 | MsG0580024129.01.T01:intron | 35.0% | |
| GTTATTATTCTTATGCAGGC+AGG | - | Chr5:1198595-1198614 | MsG0580024129.01.T01:intron | 35.0% | |
| TAATTTGATATTACGCGAGG+TGG | - | Chr5:1198277-1198296 | MsG0580024129.01.T01:intron | 35.0% | |
| TACATGAGAAAACTTCTGTG+TGG | + | Chr5:1198639-1198658 | None:intergenic | 35.0% | |
| TAGATATCAGAATGAGACAG+AGG | - | Chr5:1198991-1199010 | MsG0580024129.01.T01:CDS | 35.0% | |
| TATAACCATTAGGTGGTGAA+TGG | + | Chr5:1196974-1196993 | None:intergenic | 35.0% | |
| TATTGATGTTTGATGGAAGC+AGG | - | Chr5:1198150-1198169 | MsG0580024129.01.T01:intron | 35.0% | |
| TCCCATCTTATGCTGATATT+TGG | - | Chr5:1198821-1198840 | MsG0580024129.01.T01:intron | 35.0% | |
| TCCTATCTTGTGCTTCTATT+TGG | - | Chr5:1199461-1199480 | MsG0580024129.01.T01:five_prime_UTR | 35.0% | |
| TCTGCAAACATGAAGAAAGT+AGG | + | Chr5:1198778-1198797 | None:intergenic | 35.0% | |
| TGTAATGTGTGACATTGATG+AGG | - | Chr5:1198071-1198090 | MsG0580024129.01.T01:intron | 35.0% | |
| TTATGCTGATATTTGGGGAT+GGG | - | Chr5:1198828-1198847 | MsG0580024129.01.T01:intron | 35.0% | |
| TTCAGCTCTGTAACAATCAA+AGG | + | Chr5:1198340-1198359 | None:intergenic | 35.0% | |
| TTGTATCAATGGACAACCAA+TGG | - | Chr5:1199437-1199456 | MsG0580024129.01.T01:five_prime_UTR | 35.0% | |
| TTTCTTCATGTTTGCAGATG+TGG | - | Chr5:1198780-1198799 | MsG0580024129.01.T01:intron | 35.0% | |
| ! | AATGGAAATGGGATTAGCAA+TGG | - | Chr5:1196924-1196943 | MsG0580024129.01.T01:intron | 35.0% |
| ! | ATTCCACCTTTCTTCAGTTT+TGG | + | Chr5:1198477-1198496 | None:intergenic | 35.0% |
| ! | GAGAGGTATGATGTAATAGT+TGG | - | Chr5:1198375-1198394 | MsG0580024129.01.T01:intron | 35.0% |
| ! | GCTTGTAAGTGTTGTATCAA+TGG | - | Chr5:1199426-1199445 | MsG0580024129.01.T01:five_prime_UTR | 35.0% |
| ! | TCCAAATAGAAGCACAAGAT+AGG | + | Chr5:1199465-1199484 | None:intergenic | 35.0% |
| !! | GTTTGTTGTGATGTTATGGA+TGG | + | Chr5:1196815-1196834 | None:intergenic | 35.0% |
| !!! | CTTACAAGCCTTTTTTTGAG+TGG | + | Chr5:1199415-1199434 | None:intergenic | 35.0% |
| !!! | GTGTGTAGCTTTTTCATTCT+TGG | + | Chr5:1197130-1197149 | None:intergenic | 35.0% |
| AAAAGCCATTCACCACCTAA+TGG | - | Chr5:1196966-1196985 | MsG0580024129.01.T01:CDS | 40.0% | |
| AACTAGAAGGCAAAGAAGAG+AGG | - | Chr5:1198358-1198377 | MsG0580024129.01.T01:intron | 40.0% | |
| AAGCACAAGATAGGAACCAT+TGG | + | Chr5:1199456-1199475 | None:intergenic | 40.0% | |
| AAGCCAAAACTGAAGAAAGG+TGG | - | Chr5:1198471-1198490 | MsG0580024129.01.T01:intron | 40.0% | |
| AATACATTACACACTGCGTG+CGG | + | Chr5:1196648-1196667 | None:intergenic | 40.0% | |
| ACAATGCAATGTCTTGGTAC+TGG | + | Chr5:1197663-1197682 | None:intergenic | 40.0% | |
| AGGTGGAATATTTGTGACAC+AGG | - | Chr5:1198488-1198507 | MsG0580024129.01.T01:intron | 40.0% | |
| AGTGAGCTCATAGAAGTCTT+TGG | + | Chr5:1198448-1198467 | None:intergenic | 40.0% | |
| ATAGAAGCCAAGGAACAAGA+AGG | - | Chr5:1197299-1197318 | MsG0580024129.01.T01:intron | 40.0% | |
| CAAAGAGCCGCCATATATAA+AGG | + | Chr5:1197228-1197247 | None:intergenic | 40.0% | |
| CCCCAAATATCAGCATAAGA+TGG | + | Chr5:1198826-1198845 | None:intergenic | 40.0% | |
| CTCAAGCCAAAACTGAAGAA+AGG | - | Chr5:1198468-1198487 | MsG0580024129.01.T01:intron | 40.0% | |
| CTCTTCCTATAACCATTAGG+TGG | + | Chr5:1196981-1197000 | None:intergenic | 40.0% | |
| CTGGATGAACAAGACATTCA+TGG | + | Chr5:1197864-1197883 | None:intergenic | 40.0% | |
| CTTATGCTGATATTTGGGGA+TGG | - | Chr5:1198827-1198846 | MsG0580024129.01.T01:intron | 40.0% | |
| CTTTATATATGGCGGCTCTT+TGG | - | Chr5:1197226-1197245 | MsG0580024129.01.T01:intron | 40.0% | |
| GAGACTCATGTATACACAGA+GGG | - | Chr5:1199193-1199212 | MsG0580024129.01.T01:five_prime_UTR | 40.0% | |
| GATAAGATACGGTCCTAACT+AGG | - | Chr5:1196595-1196614 | MsG0580024129.01.T01:three_prime_UTR | 40.0% | |
| GATGGGATATGAGCTGAATA+AGG | + | Chr5:1198808-1198827 | None:intergenic | 40.0% | |
| GATTTGGCTGATCCAATAGA+AGG | - | Chr5:1198399-1198418 | MsG0580024129.01.T01:intron | 40.0% | |
| GCTAGGTTCATATATGGTCA+TGG | - | Chr5:1199220-1199239 | MsG0580024129.01.T01:five_prime_UTR | 40.0% | |
| GGAATATTTGTGACACAGGT+AGG | - | Chr5:1198492-1198511 | MsG0580024129.01.T01:intron | 40.0% | |
| GGTGAAGTAGCTTACACAAA+TGG | - | Chr5:1196906-1196925 | MsG0580024129.01.T01:intron | 40.0% | |
| GTACCAAGACATTGCATTGT+TGG | - | Chr5:1197663-1197682 | MsG0580024129.01.T01:CDS | 40.0% | |
| GTTCGTAACTCGTAAGCAAA+TGG | - | Chr5:1199080-1199099 | MsG0580024129.01.T01:CDS | 40.0% | |
| TGAGACTCATGTATACACAG+AGG | - | Chr5:1199192-1199211 | MsG0580024129.01.T01:five_prime_UTR | 40.0% | |
| TGTCCAACAATGCAATGTCT+TGG | + | Chr5:1197669-1197688 | None:intergenic | 40.0% | |
| TGTTACAGAGCTGAACTAGA+AGG | - | Chr5:1198345-1198364 | MsG0580024129.01.T01:intron | 40.0% | |
| TTGCAGGCATTAGTACTTGA+CGG | - | Chr5:1197802-1197821 | MsG0580024129.01.T01:CDS | 40.0% | |
| TTTATTATGGGAGGAGGAGA+AGG | - | Chr5:1198003-1198022 | MsG0580024129.01.T01:CDS | 40.0% | |
| TTTGTCTCACTCAAACCCAA+TGG | + | Chr5:1197332-1197351 | None:intergenic | 40.0% | |
| ! | GAGAATCTGAAGCCTGTTAT+AGG | + | Chr5:1198947-1198966 | None:intergenic | 40.0% |
| ! | GGGATTAGCAATGGCATTAA+TGG | - | Chr5:1196933-1196952 | MsG0580024129.01.T01:intron | 40.0% |
| ! | TTTTTCCCTTGGCCTATAAC+AGG | - | Chr5:1198932-1198951 | MsG0580024129.01.T01:intron | 40.0% |
| !! | AAAAGCACCTTCTTGTTCCT+TGG | + | Chr5:1197309-1197328 | None:intergenic | 40.0% |
| !!! | ACAAGAAGGTGCTTTTCCAT+TGG | - | Chr5:1197313-1197332 | MsG0580024129.01.T01:intron | 40.0% |
| !!! | CAAGAAGGTGCTTTTCCATT+GGG | - | Chr5:1197314-1197333 | MsG0580024129.01.T01:intron | 40.0% |
| ACAGGCTTCAGATTCTCCAT+TGG | - | Chr5:1198950-1198969 | MsG0580024129.01.T01:intron | 45.0% | |
| AGACGGGAAATCTAGCAAAG+TGG | + | Chr5:1196728-1196747 | None:intergenic | 45.0% | |
| AGGAGAAGGATCTACTGCAA+GGG | - | Chr5:1198017-1198036 | MsG0580024129.01.T01:CDS | 45.0% | |
| ATACATTACACACTGCGTGC+GGG | + | Chr5:1196647-1196666 | None:intergenic | 45.0% | |
| ATAGGATGGTGAAGAAGAGC+TGG | + | Chr5:1197883-1197902 | None:intergenic | 45.0% | |
| CGACTTCAAGTCTCGAATCA+TGG | + | Chr5:1198225-1198244 | None:intergenic | 45.0% | |
| GATGGTGCTTTGCTCTCAAT+AGG | - | Chr5:1197036-1197055 | MsG0580024129.01.T01:CDS | 45.0% | |
| GGAGCAGCTAGGTTCATATA+TGG | - | Chr5:1199214-1199233 | MsG0580024129.01.T01:five_prime_UTR | 45.0% | |
| TAGCAAGGACCTCCTTCTAT+TGG | + | Chr5:1198414-1198433 | None:intergenic | 45.0% | |
| TCTTCAGCACTAAGGTCCAA+TGG | + | Chr5:1198969-1198988 | None:intergenic | 45.0% | |
| TGAAGCCTGTTATAGGCCAA+GGG | + | Chr5:1198940-1198959 | None:intergenic | 45.0% | |
| TGATGTTTGATGGAAGCAGG+AGG | - | Chr5:1198153-1198172 | MsG0580024129.01.T01:intron | 45.0% | |
| TGCAGGCATTAGTACTTGAC+GGG | - | Chr5:1197803-1197822 | MsG0580024129.01.T01:CDS | 45.0% | |
| TTGGCTGATCCAATAGAAGG+AGG | - | Chr5:1198402-1198421 | MsG0580024129.01.T01:intron | 45.0% | |
| TTGTTGGACACAAAGCCCTT+TGG | - | Chr5:1197679-1197698 | MsG0580024129.01.T01:intron | 45.0% | |
| TTTGTGACACAGGTAGGTGA+CGG | - | Chr5:1198498-1198517 | MsG0580024129.01.T01:intron | 45.0% | |
| ! | AGTGGTGAAAGTACAAGCCA+AGG | + | Chr5:1199397-1199416 | None:intergenic | 45.0% |
| ! | GTGGTGAAAGTACAAGCCAA+GGG | + | Chr5:1199396-1199415 | None:intergenic | 45.0% |
| ! | TGAGAGCAAAGCACCATCTA+AGG | + | Chr5:1197034-1197053 | None:intergenic | 45.0% |
| ! | TGGTGAAAGTACAAGCCAAG+GGG | + | Chr5:1199395-1199414 | None:intergenic | 45.0% |
| AGATACGGTCCTAACTAGGG+AGG | - | Chr5:1196599-1196618 | MsG0580024129.01.T01:three_prime_UTR | 50.0% | |
| CTGAAGCCTGTTATAGGCCA+AGG | + | Chr5:1198941-1198960 | None:intergenic | 50.0% | |
| GAGGAGAAGGATCTACTGCA+AGG | - | Chr5:1198016-1198035 | MsG0580024129.01.T01:CDS | 50.0% | |
| GATACGGTCCTAACTAGGGA+GGG | - | Chr5:1196600-1196619 | MsG0580024129.01.T01:three_prime_UTR | 50.0% | |
| GTGTGGCTGAATATTCCAGC+AGG | + | Chr5:1198622-1198641 | None:intergenic | 50.0% | |
| TATACACAGAGGGAGCAGCT+AGG | - | Chr5:1199203-1199222 | MsG0580024129.01.T01:five_prime_UTR | 50.0% | |
| TGATATTTGGGGATGGGTCC+TGG | - | Chr5:1198834-1198853 | MsG0580024129.01.T01:intron | 50.0% | |
| TGTTTGATGGAAGCAGGAGG+TGG | - | Chr5:1198156-1198175 | MsG0580024129.01.T01:intron | 50.0% | |
| AAGTCGTCATCAACGACGCG+AGG | - | Chr5:1198239-1198258 | MsG0580024129.01.T01:intron | 55.0% | |
| CTACTGCAAGGGAACTGCTC+AGG | - | Chr5:1198028-1198047 | MsG0580024129.01.T01:CDS | 55.0% | |
| GGACACAAAGCCCTTTGGCA+AGG | - | Chr5:1197684-1197703 | MsG0580024129.01.T01:intron | 55.0% | |
| GGCTGCAGCATCTTGCATAC+AGG | - | Chr5:1197631-1197650 | MsG0580024129.01.T01:CDS | 55.0% | |
| CTTATGCAGGCAGGGCCTGC+TGG | - | Chr5:1198604-1198623 | MsG0580024129.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 1196502 | 1199536 | 1196502 | ID=MsG0580024129.01;Name=MsG0580024129.01 |
| Chr5 | mRNA | 1196502 | 1199536 | 1196502 | ID=MsG0580024129.01.T01;Parent=MsG0580024129.01;Name=MsG0580024129.01.T01;_AED=0.49;_eAED=0.49;_QI=401|0.85|1|1|1|1|8|281|282 |
| Chr5 | exon | 1196502 | 1196855 | 1196502 | ID=MsG0580024129.01.T01:exon:23369;Parent=MsG0580024129.01.T01 |
| Chr5 | exon | 1196948 | 1197084 | 1196948 | ID=MsG0580024129.01.T01:exon:23368;Parent=MsG0580024129.01.T01 |
| Chr5 | exon | 1197183 | 1197241 | 1197183 | ID=MsG0580024129.01.T01:exon:23367;Parent=MsG0580024129.01.T01 |
| Chr5 | exon | 1197350 | 1197425 | 1197350 | ID=MsG0580024129.01.T01:exon:23366;Parent=MsG0580024129.01.T01 |
| Chr5 | exon | 1197529 | 1197685 | 1197529 | ID=MsG0580024129.01.T01:exon:23365;Parent=MsG0580024129.01.T01 |
| Chr5 | exon | 1197778 | 1197866 | 1197778 | ID=MsG0580024129.01.T01:exon:23364;Parent=MsG0580024129.01.T01 |
| Chr5 | exon | 1197946 | 1198048 | 1197946 | ID=MsG0580024129.01.T01:exon:23363;Parent=MsG0580024129.01.T01 |
| Chr5 | exon | 1198981 | 1199536 | 1198981 | ID=MsG0580024129.01.T01:exon:23362;Parent=MsG0580024129.01.T01 |
| Chr5 | five_prime_UTR | 1199136 | 1199536 | 1199136 | ID=MsG0580024129.01.T01:five_prime_utr;Parent=MsG0580024129.01.T01 |
| Chr5 | CDS | 1198981 | 1199135 | 1198981 | ID=MsG0580024129.01.T01:cds;Parent=MsG0580024129.01.T01 |
| Chr5 | CDS | 1197946 | 1198048 | 1197946 | ID=MsG0580024129.01.T01:cds;Parent=MsG0580024129.01.T01 |
| Chr5 | CDS | 1197778 | 1197866 | 1197778 | ID=MsG0580024129.01.T01:cds;Parent=MsG0580024129.01.T01 |
| Chr5 | CDS | 1197529 | 1197685 | 1197529 | ID=MsG0580024129.01.T01:cds;Parent=MsG0580024129.01.T01 |
| Chr5 | CDS | 1197350 | 1197425 | 1197350 | ID=MsG0580024129.01.T01:cds;Parent=MsG0580024129.01.T01 |
| Chr5 | CDS | 1197183 | 1197241 | 1197183 | ID=MsG0580024129.01.T01:cds;Parent=MsG0580024129.01.T01 |
| Chr5 | CDS | 1196948 | 1197084 | 1196948 | ID=MsG0580024129.01.T01:cds;Parent=MsG0580024129.01.T01 |
| Chr5 | CDS | 1196783 | 1196855 | 1196783 | ID=MsG0580024129.01.T01:cds;Parent=MsG0580024129.01.T01 |
| Chr5 | three_prime_UTR | 1196502 | 1196782 | 1196502 | ID=MsG0580024129.01.T01:three_prime_utr;Parent=MsG0580024129.01.T01 |
| Gene Sequence |
| Protein sequence |
