AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014560.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014560.01.T01 MTR_3g060240 92.157 357 27 1 1 356 1 357 0.0 691
MsG0380014560.01.T01 MTR_3g060220 89.859 355 36 0 1 355 1 355 0.0 671
MsG0380014560.01.T01 MTR_3g060220 89.607 356 36 1 1 355 1 356 0.0 666
MsG0380014560.01.T01 MTR_3g060280 69.589 365 100 3 2 356 4 367 0.0 541
MsG0380014560.01.T01 MTR_3g060280 69.589 365 100 3 2 356 4 367 0.0 541
MsG0380014560.01.T01 MTR_3g060280 69.589 365 100 3 2 356 4 367 0.0 539
MsG0380014560.01.T01 MTR_3g060280 69.589 365 100 3 2 356 4 367 0.0 538
MsG0380014560.01.T01 MTR_8g063270 40.909 330 178 7 38 355 16 340 1.42e-80 261
MsG0380014560.01.T01 MTR_2g087900 41.694 307 158 8 52 350 52 345 5.60e-80 249
MsG0380014560.01.T01 MTR_8g086600 41.212 330 178 7 38 355 212 537 1.30e-79 262
MsG0380014560.01.T01 MTR_2g016630 40.606 330 180 7 38 355 197 522 2.80e-79 261
MsG0380014560.01.T01 MTR_8g063270 40.909 330 178 7 38 355 221 545 4.26e-79 261
MsG0380014560.01.T01 MTR_1g098550 40.909 330 179 7 38 355 303 628 1.46e-78 261
MsG0380014560.01.T01 MTR_1g098550 40.909 330 179 7 38 355 307 632 1.64e-78 260
MsG0380014560.01.T01 MTR_3g107520 40.909 330 179 7 38 355 297 622 1.87e-78 260
MsG0380014560.01.T01 MTR_3g030040 41.390 331 176 9 38 355 287 612 2.19e-78 260
MsG0380014560.01.T01 MTR_2g087900 41.830 306 161 8 52 351 52 346 2.58e-78 248
MsG0380014560.01.T01 MTR_8g092590 40.303 330 181 7 38 355 305 630 3.87e-78 259
MsG0380014560.01.T01 MTR_4g130510 39.697 330 183 7 38 355 267 592 3.42e-77 251
MsG0380014560.01.T01 MTR_2g087900 41.694 307 162 8 51 351 51 346 4.34e-77 248
MsG0380014560.01.T01 MTR_2g087960 39.286 308 173 5 52 354 52 350 5.44e-77 247
MsG0380014560.01.T01 MTR_4g130510 39.697 330 183 7 38 355 267 592 3.19e-76 251
MsG0380014560.01.T01 MTR_2g087900 41.830 306 161 8 52 351 52 346 7.94e-76 248
MsG0380014560.01.T01 MTR_2g087960 39.286 308 173 5 52 354 52 350 9.37e-76 248
MsG0380014560.01.T01 MTR_8g037260 39.104 335 188 7 33 355 282 612 1.57e-75 252
MsG0380014560.01.T01 MTR_4g130510 39.697 330 183 7 38 355 267 592 1.62e-75 252
MsG0380014560.01.T01 MTR_2g087980 39.739 307 168 6 52 354 47 340 1.87e-74 244
MsG0380014560.01.T01 MTR_2g087950 40.373 322 172 8 38 353 37 344 5.24e-73 241
MsG0380014560.01.T01 MTR_3g007770 41.121 321 173 7 38 346 254 570 8.52e-73 244
MsG0380014560.01.T01 MTR_4g088225 41.611 298 164 5 52 349 59 346 2.50e-72 238
MsG0380014560.01.T01 MTR_4g088225 41.611 298 164 5 52 349 59 346 3.06e-72 238
MsG0380014560.01.T01 MTR_4g050000 40.498 321 174 9 38 354 37 344 4.81e-72 238
MsG0380014560.01.T01 MTR_7g106680 38.348 339 193 7 29 355 236 570 6.50e-72 242
MsG0380014560.01.T01 MTR_2g035780 38.272 324 185 6 44 355 243 563 9.01e-72 241
MsG0380014560.01.T01 MTR_0011s0020 38.398 362 179 10 1 356 6 329 1.86e-71 236
MsG0380014560.01.T01 MTR_1g069605 37.143 350 194 8 18 355 117 452 8.29e-71 237
MsG0380014560.01.T01 MTR_2g037830 41.497 294 151 4 52 345 46 318 1.31e-70 229
MsG0380014560.01.T01 MTR_3g005560 39.228 311 154 6 52 355 46 328 8.47e-70 224
MsG0380014560.01.T01 MTR_2g037830 41.497 294 151 4 52 345 46 318 2.60e-69 230
MsG0380014560.01.T01 MTR_1g073740 37.875 367 195 8 3 355 5 352 3.75e-69 230
MsG0380014560.01.T01 MTR_4g130510 35.989 364 183 8 38 355 267 626 4.17e-69 234
MsG0380014560.01.T01 MTR_3g450800 40.614 293 142 5 58 345 4 269 5.37e-69 228
MsG0380014560.01.T01 MTR_3g005560 39.228 311 154 6 52 355 46 328 5.36e-68 223
MsG0380014560.01.T01 MTR_3g005560 39.228 311 154 6 52 355 46 328 5.12e-67 224
MsG0380014560.01.T01 MTR_1g039480 33.333 393 192 9 22 346 270 660 9.78e-67 228
MsG0380014560.01.T01 MTR_5g029190 34.392 378 180 8 44 355 289 664 2.05e-66 227
MsG0380014560.01.T01 MTR_1g039445 34.060 367 176 8 44 346 282 646 1.34e-65 224
MsG0380014560.01.T01 MTR_4g077910 33.500 400 199 8 21 355 288 685 5.63e-65 223
MsG0380014560.01.T01 MTR_7g109200 34.309 376 182 7 44 355 334 708 8.31e-64 219
MsG0380014560.01.T01 MTR_7g116230 34.426 366 203 10 24 355 144 506 4.94e-61 210
MsG0380014560.01.T01 MTR_2g438220 33.421 380 180 10 44 354 196 571 3.14e-60 209
MsG0380014560.01.T01 MTR_2g087900 38.756 209 116 6 52 254 52 254 1.99e-43 152
MsG0380014560.01.T01 MTR_3g091270 30.943 265 138 4 91 355 104 323 8.74e-31 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014560.01.T01 AT1G55850 55.650 354 146 5 8 356 18 365 3.24e-141 417
MsG0380014560.01.T01 AT4G24010 41.033 329 188 3 21 346 26 351 4.98e-83 268
MsG0380014560.01.T01 AT4G23990 43.000 300 165 3 59 355 83 379 1.70e-82 266
MsG0380014560.01.T01 AT4G24000 40.882 340 186 5 21 356 23 351 3.84e-82 265
MsG0380014560.01.T01 AT4G39350 40.606 330 180 7 38 355 293 618 5.54e-78 259
MsG0380014560.01.T01 AT4G18780 39.697 330 183 7 38 355 200 525 5.71e-78 258
MsG0380014560.01.T01 AT2G25540 40.303 330 181 7 38 355 271 596 5.98e-78 259
MsG0380014560.01.T01 AT4G32410 39.286 336 188 7 32 355 285 616 2.21e-77 257
MsG0380014560.01.T01 AT5G17420 40.303 330 181 7 38 355 254 579 3.00e-77 256
MsG0380014560.01.T01 AT2G21770 40.909 330 179 7 38 355 298 623 2.16e-76 254
MsG0380014560.01.T01 AT5G05170 38.938 339 191 7 29 355 266 600 2.26e-76 254
MsG0380014560.01.T01 AT5G64740 40.606 330 180 7 38 355 292 617 2.72e-76 254
MsG0380014560.01.T01 AT5G09870 40.303 330 181 7 38 355 280 605 4.91e-76 253
MsG0380014560.01.T01 AT5G44030 39.815 324 180 6 44 355 236 556 3.70e-74 248
MsG0380014560.01.T01 AT5G44030 39.815 324 180 6 44 355 265 585 6.10e-74 248
MsG0380014560.01.T01 AT4G38190 33.666 401 195 10 18 354 272 665 8.03e-68 231
MsG0380014560.01.T01 AT2G32620 40.909 308 158 10 38 336 39 331 1.45e-66 219
MsG0380014560.01.T01 AT1G32180 34.805 385 176 8 44 355 143 525 3.74e-66 225
MsG0380014560.01.T01 AT1G32180 34.805 385 176 8 44 355 143 525 3.74e-66 225
MsG0380014560.01.T01 AT4G15320 38.150 346 189 10 8 344 10 339 4.24e-66 223
MsG0380014560.01.T01 AT4G15320 38.150 346 189 10 8 344 10 339 4.36e-66 222
MsG0380014560.01.T01 AT2G32620 40.909 308 158 10 38 336 39 331 6.95e-66 219
MsG0380014560.01.T01 AT2G32530 39.048 315 178 9 34 344 35 339 1.21e-65 221
MsG0380014560.01.T01 AT2G32620 40.909 308 158 10 38 336 39 331 3.81e-65 220
MsG0380014560.01.T01 AT2G32540 39.604 303 161 6 51 344 50 339 1.29e-64 218
MsG0380014560.01.T01 AT2G33100 35.422 367 171 7 44 345 204 569 2.91e-64 220
MsG0380014560.01.T01 AT2G33100 35.422 367 171 7 44 345 204 569 2.91e-64 220
MsG0380014560.01.T01 AT5G44030 40.809 272 151 5 91 355 9 277 8.09e-64 216
MsG0380014560.01.T01 AT3G03050 34.584 373 178 8 47 355 318 688 1.46e-63 219
MsG0380014560.01.T01 AT4G15320 36.288 361 190 10 8 344 10 354 2.09e-63 215
MsG0380014560.01.T01 AT1G02730 34.474 380 179 7 44 355 339 716 5.92e-63 217
MsG0380014560.01.T01 AT5G16910 34.048 373 180 8 47 355 321 691 5.21e-62 214
MsG0380014560.01.T01 AT2G32610 38.019 313 169 9 34 336 35 332 2.49e-61 209
MsG0380014560.01.T01 AT4G15290 38.614 303 164 7 51 344 50 339 6.55e-58 200
MsG0380014560.01.T01 AT4G15320 33.673 392 189 11 8 344 10 385 8.35e-58 200
MsG0380014560.01.T01 AT2G32620 42.915 247 120 7 99 336 1 235 1.60e-53 187
MsG0380014560.01.T01 AT4G15320 30.575 435 188 12 8 344 10 428 2.80e-51 182
MsG0380014560.01.T01 AT4G23990 40.244 164 95 1 195 355 2 165 9.53e-36 137
MsG0380014560.01.T01 AT4G24000 40.361 166 87 3 195 356 2 159 3.47e-33 129

Find 87 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGCTCTTTAGGATTATT+TGG 0.116886 3:+56497758 None:intergenic
TTTGAAGTTATGATGAAATT+TGG 0.141625 3:+56495741 None:intergenic
TATGCCCACCTTGGTATATT+TGG 0.175535 3:-56495779 MsG0380014560.01.T01:CDS
ATTATTGGTGGTTCAATATC+TGG 0.182940 3:+56497989 None:intergenic
GAGAAGGGTTGCCTGAAAAT+AGG 0.217246 3:+56499195 None:intergenic
TACCCAAAGAAGATGGAAAA+TGG 0.232894 3:-56499293 MsG0380014560.01.T01:CDS
TTGATGGCCAAAAGCTCTTT+AGG 0.251827 3:+56497749 None:intergenic
TGAAAATAGGGTTCCATCTA+AGG 0.252001 3:+56499208 None:intergenic
CAAACAATTCTCAATCAATA+AGG 0.252812 3:-56495455 MsG0380014560.01.T01:CDS
TTGTAGGAATTTGCTCCATT+TGG 0.281017 3:-56499335 MsG0380014560.01.T01:CDS
TTCTCTTTCTCTTTGTTTGT+AGG 0.285077 3:-56499351 MsG0380014560.01.T01:CDS
TATGCATATAGCATTATATT+TGG 0.287659 3:+56499568 None:intergenic
ACCTTGAATCTCTTGCAAAA+TGG 0.308345 3:+56497827 None:intergenic
TGATTAGTTTGTTACCTTGA+TGG 0.319733 3:+56497733 None:intergenic
GGATGCACTTTGCTTCTTCA+TGG 0.325256 3:-56495433 MsG0380014560.01.T01:CDS
ACTGTGTTAATCACCATTAT+TGG 0.325856 3:+56497974 None:intergenic
AAATAATCCTAAAGAGCTTT+TGG 0.329209 3:-56497756 MsG0380014560.01.T01:CDS
TGTAGGAATTTGCTCCATTT+GGG 0.331776 3:-56499334 MsG0380014560.01.T01:CDS
TCCTTCGCCAAGCCCTTAGA+TGG 0.335267 3:-56499221 MsG0380014560.01.T01:CDS
TTGAAGTTATGATGAAATTT+GGG 0.344454 3:+56495742 None:intergenic
GATTGCTTTGTGCTGAACTA+TGG 0.350824 3:-56499260 MsG0380014560.01.T01:CDS
AGATATTGAACCACCAATAA+TGG 0.352515 3:-56497987 MsG0380014560.01.T01:CDS
AAAGCTCTTTAGGATTATTT+GGG 0.360058 3:+56497759 None:intergenic
AAGAAGATGGAAAATGGGTT+TGG 0.382244 3:-56499287 MsG0380014560.01.T01:CDS
CTACTCGACTTTCCATATCT+TGG 0.397111 3:+56496167 None:intergenic
CTTTGTGCTGAACTATGGTT+TGG 0.397394 3:-56499255 MsG0380014560.01.T01:CDS
ATAGAGAATGTACCAAGATA+TGG 0.405285 3:-56496179 MsG0380014560.01.T01:intron
AGAAGGGTTGCCTGAAAATA+GGG 0.409085 3:+56499196 None:intergenic
TGATTTGAGTATGCTTCGTT+CGG 0.414344 3:+56496118 None:intergenic
GATGGAAAATGGGTTTGGAT+TGG 0.417771 3:-56499282 MsG0380014560.01.T01:CDS
ATAGATACTGCTTCATAGAA+AGG 0.419423 3:-56495830 MsG0380014560.01.T01:intron
AGCTCAAGAATTAAGAAAGA+TGG 0.434422 3:-56499439 MsG0380014560.01.T01:exon
TTTCATCATAACTTCAAAGC+TGG 0.436862 3:-56495736 MsG0380014560.01.T01:CDS
CACACAAATATGTCCACTTT+GGG 0.444982 3:+56498022 None:intergenic
AAACAATTCTCAATCAATAA+GGG 0.446557 3:-56495454 MsG0380014560.01.T01:CDS
CTTCTAAATTTGCTAAGCAT+TGG 0.454514 3:-56497853 MsG0380014560.01.T01:CDS
TTCTTTACTTGTAGCTTATG+AGG 0.455957 3:-56495328 MsG0380014560.01.T01:CDS
ATTAAGAAAGATGGGGAAAG+AGG 0.461029 3:-56499430 MsG0380014560.01.T01:exon
GCTCAAGAATTAAGAAAGAT+GGG 0.464482 3:-56499438 MsG0380014560.01.T01:exon
CCTCTCCTTGTTTCAAACAA+TGG 0.468109 3:+56499399 None:intergenic
CTTCTTCATGGATGAAGAGA+AGG 0.469449 3:-56495421 MsG0380014560.01.T01:CDS
AGCTGGAGCTATGAATTCAT+TGG 0.478202 3:-56495719 MsG0380014560.01.T01:intron
CGAAGCATACTCAAATCATA+AGG 0.478697 3:-56496113 MsG0380014560.01.T01:CDS
ACCCAAAGAAGATGGAAAAT+GGG 0.481854 3:-56499292 MsG0380014560.01.T01:CDS
TAGGGTTCCATCTAAGGGCT+TGG 0.486681 3:+56499214 None:intergenic
ACTCAAGGTGTCTTATGAAA+AGG 0.486721 3:-56499592 MsG0380014560.01.T01:five_prime_UTR
GTAGAAAATGCATCCAAGTT+GGG 0.487538 3:-56496148 MsG0380014560.01.T01:CDS
ACACACAAATATGTCCACTT+TGG 0.492778 3:+56498021 None:intergenic
ACATGAAATTGCCTTTGTGC+AGG 0.505115 3:-56495397 MsG0380014560.01.T01:CDS
TTGTGAAAGTCTTTCAGAGA+AGG 0.505768 3:+56499179 None:intergenic
GTTCGGTACTTTACCCAACT+TGG 0.506866 3:+56496135 None:intergenic
ACTCAATCTGTAAACCCAAA+TGG 0.508314 3:+56499320 None:intergenic
GTGTTAATCACCATTATTGG+TGG 0.509771 3:+56497977 None:intergenic
AATTTATATTAAAGAATACA+AGG 0.510444 3:-56499469 MsG0380014560.01.T01:five_prime_UTR
AGTTACATACCCAAAGAAGA+TGG 0.514625 3:-56499300 MsG0380014560.01.T01:CDS
CAAGTAAAGAACCACCGTAT+AGG 0.519992 3:+56495340 None:intergenic
TCTTTAATATAAATTCCCTA+TGG 0.523237 3:+56499477 None:intergenic
TGTGAAAGTCTTTCAGAGAA+GGG 0.523871 3:+56499180 None:intergenic
AAATATGCACTTGGCGACCT+AGG 0.526790 3:+56497800 None:intergenic
TTTGAAACAAGGAGAGGGAA+GGG 0.530728 3:-56499393 MsG0380014560.01.T01:CDS
AGTGGACATATTTGTGTGTA+CGG 0.534171 3:-56498017 MsG0380014560.01.T01:CDS
AGTAGAAAATGCATCCAAGT+TGG 0.534174 3:-56496149 MsG0380014560.01.T01:CDS
TGTCATCAATGATTAGCAAT+GGG 0.542769 3:-56495512 MsG0380014560.01.T01:CDS
TCCATCTAAGGGCTTGGCGA+AGG 0.544391 3:+56499220 None:intergenic
GTGTATCTTTCAGATGATGC+TGG 0.557262 3:-56497908 MsG0380014560.01.T01:CDS
TCATTGAGTTCATATACCAT+AGG 0.561078 3:-56499493 MsG0380014560.01.T01:five_prime_UTR
TAACACAGTATTATCTGTGA+TGG 0.561776 3:-56497960 MsG0380014560.01.T01:CDS
CATTGTTTGAAACAAGGAGA+GGG 0.565564 3:-56499398 MsG0380014560.01.T01:CDS
CATTGAGTTCATATACCATA+GGG 0.565688 3:-56499492 MsG0380014560.01.T01:five_prime_UTR
GTGTCATCAATGATTAGCAA+TGG 0.569343 3:-56495513 MsG0380014560.01.T01:CDS
TGAGAGCAAGCTACCCAAAG+TGG 0.583245 3:-56498035 MsG0380014560.01.T01:CDS
ATTATCCATTGTTTGAAACA+AGG 0.584708 3:-56499404 MsG0380014560.01.T01:CDS
GTTTGAAACAAGGAGAGGGA+AGG 0.595484 3:-56499394 MsG0380014560.01.T01:CDS
CGAGCCAAATATACCAAGGT+GGG 0.599351 3:+56495775 None:intergenic
TTCTTCATGGATGAAGAGAA+GGG 0.601789 3:-56495420 MsG0380014560.01.T01:CDS
GACAATGCTAGAGATGAAGA+TGG 0.605747 3:-56495808 MsG0380014560.01.T01:CDS
GAAAATAGGGTTCCATCTAA+GGG 0.618382 3:+56499209 None:intergenic
ATTTATATTAAAGAATACAA+GGG 0.626216 3:-56499468 MsG0380014560.01.T01:five_prime_UTR
ATACTTGAAGAATTGTGTCA+TGG 0.633922 3:+56496053 None:intergenic
CCATTGTTTGAAACAAGGAG+AGG 0.635168 3:-56499399 MsG0380014560.01.T01:CDS
CTCAAGAATTAAGAAAGATG+GGG 0.646488 3:-56499437 MsG0380014560.01.T01:exon
AAAGTCTTGAAATATGCACT+TGG 0.650998 3:+56497791 None:intergenic
CTCACGAGCCAAATATACCA+AGG 0.657691 3:+56495771 None:intergenic
AGAGATTCAAGGTTGAACCT+AGG 0.664021 3:-56497817 MsG0380014560.01.T01:CDS
ACGAGCCAAATATACCAAGG+TGG 0.686997 3:+56495774 None:intergenic
TCTCTGAAAGACTTTCACAA+AGG 0.693606 3:-56499176 MsG0380014560.01.T01:intron
GCACTGAGGAGCCTGCACAA+AGG 0.703435 3:+56495386 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG + Chr3:56495897-56495878 None:intergenic 0.0%
!! ATATATATATATATATATAT+GGG - Chr3:56495878-56495897 MsG0380014560.01.T01:intron 0.0%
!! TATATATATATATATATATA+GGG + Chr3:56495896-56495877 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG - Chr3:56495877-56495896 MsG0380014560.01.T01:intron 0.0%
!! AATTTATATTAAAGAATACA+AGG - Chr3:56495490-56495509 MsG0380014560.01.T01:CDS 10.0%
!! ATTTATATTAAAGAATACAA+GGG - Chr3:56495491-56495510 MsG0380014560.01.T01:CDS 10.0%
!! CAATTTATTAATTCATTAAA+AGG - Chr3:56496675-56496694 MsG0380014560.01.T01:intron 10.0%
!! TAATAATAAAAAAATACTCA+AGG - Chr3:56495352-56495371 MsG0380014560.01.T01:CDS 10.0%
!!! ATATTTTGAGATTAAAATTA+GGG - Chr3:56497902-56497921 MsG0380014560.01.T01:CDS 10.0%
!! ATACTTTATTAAGTTTGTAA+AGG - Chr3:56496546-56496565 MsG0380014560.01.T01:intron 15.0%
!! ATATAAATTAAAAAGTAGTG+AGG - Chr3:56496030-56496049 MsG0380014560.01.T01:intron 15.0%
!! ATTAAAATTAGGGTTTAATT+AGG - Chr3:56497912-56497931 MsG0380014560.01.T01:CDS 15.0%
!! ATTATTTCGAATAAAATTTG+CGG - Chr3:56498038-56498057 MsG0380014560.01.T01:CDS 15.0%
!! TAAAATAAGTATAGTTTACA+AGG - Chr3:56495848-56495867 MsG0380014560.01.T01:intron 15.0%
!! TAAACAATTAATTAACTTCA+CGG + Chr3:56499351-56499370 None:intergenic 15.0%
!! TACTTTATTAAGTTTGTAAA+GGG - Chr3:56496547-56496566 MsG0380014560.01.T01:intron 15.0%
!! TATTAAGTTATTAGTATATC+AGG + Chr3:56499078-56499097 None:intergenic 15.0%
!! TCGTGAATTTAAATTTAATT+AGG - Chr3:56499293-56499312 MsG0380014560.01.T01:CDS 15.0%
!! TTAAAATTAGGGTTTAATTA+GGG - Chr3:56497913-56497932 MsG0380014560.01.T01:CDS 15.0%
!! TTATAAGTAAGAGAAAAAAT+AGG - Chr3:56497615-56497634 MsG0380014560.01.T01:intron 15.0%
!!! GATATTTTGAGATTAAAATT+AGG - Chr3:56497901-56497920 MsG0380014560.01.T01:CDS 15.0%
!!! TAAGCAAAATTCAATATTTT+TGG + Chr3:56496394-56496413 None:intergenic 15.0%
!!! TATTTCCATTATTTTTTTGA+AGG + Chr3:56498687-56498706 None:intergenic 15.0%
!!! TTTATTGTTTGTTTTTCATT+AGG + Chr3:56498413-56498432 None:intergenic 15.0%
!! AAACAATTCTCAATCAATAA+GGG - Chr3:56499505-56499524 MsG0380014560.01.T01:five_prime_UTR 20.0%
!! AACTTAATATGACAATTAGT+TGG - Chr3:56499089-56499108 MsG0380014560.01.T01:intron 20.0%
!! AATTCAATCAGAAAAGAAAA+AGG + Chr3:56498936-56498955 None:intergenic 20.0%
!! ATAAATTAACCTTGTAAACT+AGG + Chr3:56495860-56495879 None:intergenic 20.0%
!! ATAGAAATTAAAAAGTAGTG+TGG - Chr3:56495948-56495967 MsG0380014560.01.T01:intron 20.0%
!! ATAGTATGTAATAACGAAAT+TGG - Chr3:56498487-56498506 MsG0380014560.01.T01:intron 20.0%
!! GAGAGAATTAGATTAAAATT+AGG - Chr3:56497718-56497737 MsG0380014560.01.T01:intron 20.0%
!! GATCATCAATATGTAAATAA+TGG - Chr3:56498736-56498755 MsG0380014560.01.T01:intron 20.0%
!! GTATACAATGAATTAATTGT+TGG - Chr3:56499405-56499424 MsG0380014560.01.T01:CDS 20.0%
!! GTTATGGAAATATTATGTTA+TGG + Chr3:56497461-56497480 None:intergenic 20.0%
!! TAAATTAACCTTGTAAACTA+GGG + Chr3:56495859-56495878 None:intergenic 20.0%
!! TAACAAAATAGTTTAGTTGA+AGG - Chr3:56497400-56497419 MsG0380014560.01.T01:intron 20.0%
!! TATGCATATAGCATTATATT+TGG + Chr3:56495394-56495413 None:intergenic 20.0%
!! TCTTTAATATAAATTCCCTA+TGG + Chr3:56495485-56495504 None:intergenic 20.0%
!! TTGAAGTTATGATGAAATTT+GGG + Chr3:56499220-56499239 None:intergenic 20.0%
!! TTTAAATTCACGATCAATAT+AGG + Chr3:56499286-56499305 None:intergenic 20.0%
!!! AAATGATTGATTTGATGATT+TGG - Chr3:56496631-56496650 MsG0380014560.01.T01:intron 20.0%
!!! ATGATTTGGATAAAAATTGA+TGG - Chr3:56496645-56496664 MsG0380014560.01.T01:intron 20.0%
!!! GATTTTTTAGATTAATTGTG+TGG - Chr3:56497868-56497887 MsG0380014560.01.T01:CDS 20.0%
!!! TAGGTTTAATTTTTTGAGAT+GGG - Chr3:56497585-56497604 MsG0380014560.01.T01:intron 20.0%
!!! TTAGGTTTAATTTTGAAAGA+CGG - Chr3:56497736-56497755 MsG0380014560.01.T01:intron 20.0%
!!! TTAGGTTTAATTTTTTGAGA+TGG - Chr3:56497584-56497603 MsG0380014560.01.T01:intron 20.0%
!!! TTTGAAGTTATGATGAAATT+TGG + Chr3:56499221-56499240 None:intergenic 20.0%
!!! TTTTTTCTTATAATAGTGAC+CGG + Chr3:56496294-56496313 None:intergenic 20.0%
! AAACATTAAATGCAAAAGTG+TGG - Chr3:56497682-56497701 MsG0380014560.01.T01:intron 25.0%
! AAAGAATAAATGTGTGTATG+TGG + Chr3:56495427-56495446 None:intergenic 25.0%
! AAAGTCAAAATATGAGTACA+AGG + Chr3:56498450-56498469 None:intergenic 25.0%
! AATATGAGTACAAGGTAATT+AGG + Chr3:56498442-56498461 None:intergenic 25.0%
! AATTAATTAACTTCACGGAA+CGG + Chr3:56499346-56499365 None:intergenic 25.0%
! ACCTATAAAGATGGATATAA+AGG - Chr3:56497311-56497330 MsG0380014560.01.T01:intron 25.0%
! ACCTTTATATCCATCTTTAT+AGG + Chr3:56497315-56497334 None:intergenic 25.0%
! ATATATAACCCTAGTTTACA+AGG - Chr3:56495992-56496011 MsG0380014560.01.T01:intron 25.0%
! ATATATGTTTCCATCATTGA+AGG + Chr3:56498189-56498208 None:intergenic 25.0%
! ATCACAAAAAATGACCTATA+CGG - Chr3:56499605-56499624 MsG0380014560.01.T01:five_prime_UTR 25.0%
! ATTAAGATTACCTTCAATGA+TGG - Chr3:56498176-56498195 MsG0380014560.01.T01:intron 25.0%
! ATTGAAGGTAATCTTAATTG+AGG + Chr3:56498174-56498193 None:intergenic 25.0%
! CAAACAATTCTCAATCAATA+AGG - Chr3:56499504-56499523 MsG0380014560.01.T01:five_prime_UTR 25.0%
! CAACTCCTTCAAAAAAATAA+TGG - Chr3:56498679-56498698 MsG0380014560.01.T01:intron 25.0%
! CAATCAACTAATGATGTATA+TGG - Chr3:56496330-56496349 MsG0380014560.01.T01:intron 25.0%
! CTAGATATGTAAATCTCTTT+AGG - Chr3:56497257-56497276 MsG0380014560.01.T01:intron 25.0%
! GAGAGAATTAGGTTAAAATT+AGG - Chr3:56497566-56497585 MsG0380014560.01.T01:intron 25.0%
! GCTCTTAGGTTAAAATAATT+TGG - Chr3:56497337-56497356 MsG0380014560.01.T01:intron 25.0%
! TACAATGAATTAATTGTTGG+TGG - Chr3:56499408-56499427 MsG0380014560.01.T01:CDS 25.0%
! TCATTCATTTGAAAACTAGA+GGG - Chr3:56496721-56496740 MsG0380014560.01.T01:intron 25.0%
! TCATTGTATACTTTCCTTTA+GGG + Chr3:56499396-56499415 None:intergenic 25.0%
! TTCATTGTATACTTTCCTTT+AGG + Chr3:56499397-56499416 None:intergenic 25.0%
! TTGAAATCACTACGAAATAA+TGG + Chr3:56498575-56498594 None:intergenic 25.0%
! TTTGTGAGAATACTGAAAAA+TGG - Chr3:56498714-56498733 MsG0380014560.01.T01:intron 25.0%
!! AAATAATCCTAAAGAGCTTT+TGG - Chr3:56497203-56497222 MsG0380014560.01.T01:intron 25.0%
!! ATCATAAGGAATTTTCTCAA+TGG - Chr3:56498860-56498879 MsG0380014560.01.T01:intron 25.0%
!! ATTATCCATTGTTTGAAACA+AGG - Chr3:56495555-56495574 MsG0380014560.01.T01:intron 25.0%
!! ATTTTGCTTATAATAGTGAC+CGG - Chr3:56496404-56496423 MsG0380014560.01.T01:intron 25.0%
!! GGTTGCTAATTTAATTTCAT+AGG + Chr3:56498392-56498411 None:intergenic 25.0%
!! TCATAAGGAATTTTCTCAAT+GGG - Chr3:56498861-56498880 MsG0380014560.01.T01:intron 25.0%
!! TTAAATCTGAGTTGAAACTA+GGG - Chr3:56496602-56496621 MsG0380014560.01.T01:intron 25.0%
!! TTTAAATCTGAGTTGAAACT+AGG - Chr3:56496601-56496620 MsG0380014560.01.T01:intron 25.0%
!! TTTGTTATAGAACACAATTG+TGG - Chr3:56498292-56498311 MsG0380014560.01.T01:intron 25.0%
!!! AAAAGCTCTTTAGGATTATT+TGG + Chr3:56497204-56497223 None:intergenic 25.0%
!!! AAAGCTCTTTAGGATTATTT+GGG + Chr3:56497203-56497222 None:intergenic 25.0%
!!! AACTATGGTTTGGTTTTTAT+TGG - Chr3:56495714-56495733 MsG0380014560.01.T01:intron 25.0%
!!! AAGATATTTTAAACTACGTG+AGG + Chr3:56498960-56498979 None:intergenic 25.0%
!!! ACACTTGTTCTTAGTTTTTT+AGG + Chr3:56498326-56498345 None:intergenic 25.0%
!!! ATATCTTCGTATTTGTTGTA+CGG - Chr3:56498973-56498992 MsG0380014560.01.T01:intron 25.0%
!!! TAGGTTTAATTTTGAAAGAC+GGG - Chr3:56497737-56497756 MsG0380014560.01.T01:intron 25.0%
AAACTGTTGCATCTAAAAGA+TGG + Chr3:56498262-56498281 None:intergenic 30.0%
AAAGTCTTGAAATATGCACT+TGG + Chr3:56497171-56497190 None:intergenic 30.0%
AAATAAGCATGTACACTTTC+CGG + Chr3:56496426-56496445 None:intergenic 30.0%
AACTGTTGCATCTAAAAGAT+GGG + Chr3:56498261-56498280 None:intergenic 30.0%
AAGGTAATCTTAATTGAGGT+GGG + Chr3:56498170-56498189 None:intergenic 30.0%
AAGTAAGAGAAAATTGTCAG+TGG - Chr3:56497771-56497790 MsG0380014560.01.T01:CDS 30.0%
ACACCTTCATAAAAAGTAGT+TGG - Chr3:56496118-56496137 MsG0380014560.01.T01:CDS 30.0%
ACTGTGTTAATCACCATTAT+TGG + Chr3:56496988-56497007 None:intergenic 30.0%
AGATATTGAACCACCAATAA+TGG - Chr3:56496972-56496991 MsG0380014560.01.T01:intron 30.0%
AGCTCAAGAATTAAGAAAGA+TGG - Chr3:56495520-56495539 MsG0380014560.01.T01:CDS 30.0%
AGGTAATATTTGACGGTAAT+AGG - Chr3:56497377-56497396 MsG0380014560.01.T01:intron 30.0%
AGTTCGAAGGTAATATTTGA+CGG - Chr3:56497370-56497389 MsG0380014560.01.T01:intron 30.0%
ATAAAAGACACCTTCACAAA+AGG - Chr3:56496173-56496192 MsG0380014560.01.T01:CDS 30.0%
ATACTTGAAGAATTGTGTCA+TGG + Chr3:56498909-56498928 None:intergenic 30.0%
ATAGAGAATGTACCAAGATA+TGG - Chr3:56498780-56498799 MsG0380014560.01.T01:intron 30.0%
ATAGATACTGCTTCATAGAA+AGG - Chr3:56499129-56499148 MsG0380014560.01.T01:intron 30.0%
CATTCATTAAATGATGCGTA+TGG + Chr3:56496369-56496388 None:intergenic 30.0%
CATTGAGTTCATATACCATA+GGG - Chr3:56495467-56495486 MsG0380014560.01.T01:CDS 30.0%
CATTGTATACTTTCCTTTAG+GGG + Chr3:56499395-56499414 None:intergenic 30.0%
CTCAAGAATTAAGAAAGATG+GGG - Chr3:56495522-56495541 MsG0380014560.01.T01:CDS 30.0%
CTCATATCAACCTATAAAGA+TGG - Chr3:56497302-56497321 MsG0380014560.01.T01:intron 30.0%
CTCATTCATTTGAAAACTAG+AGG - Chr3:56496720-56496739 MsG0380014560.01.T01:intron 30.0%
GCTCAAGAATTAAGAAAGAT+GGG - Chr3:56495521-56495540 MsG0380014560.01.T01:CDS 30.0%
TAACACAGTATTATCTGTGA+TGG - Chr3:56496999-56497018 MsG0380014560.01.T01:intron 30.0%
TACATCATGCTGCATTAATT+TGG - Chr3:56498656-56498675 MsG0380014560.01.T01:intron 30.0%
TAGATTAATTGTGTGGAGAA+AGG - Chr3:56497875-56497894 MsG0380014560.01.T01:CDS 30.0%
TATGTTATGTTACAGTACCA+AGG + Chr3:56497489-56497508 None:intergenic 30.0%
TCATTGAGTTCATATACCAT+AGG - Chr3:56495466-56495485 MsG0380014560.01.T01:CDS 30.0%
TGACATTAAATGCAAAAGTG+TGG - Chr3:56497530-56497549 MsG0380014560.01.T01:intron 30.0%
TGTCATCAATGATTAGCAAT+GGG - Chr3:56499447-56499466 MsG0380014560.01.T01:five_prime_UTR 30.0%
TTAGGGTTTAATTAGGGTTA+AGG - Chr3:56497919-56497938 MsG0380014560.01.T01:CDS 30.0%
TTCTTTACTTGTAGCTTATG+AGG - Chr3:56499631-56499650 MsG0380014560.01.T01:five_prime_UTR 30.0%
TTGGTACATTCTCTATAACA+TGG + Chr3:56498776-56498795 None:intergenic 30.0%
TTTCATCATAACTTCAAAGC+TGG - Chr3:56499223-56499242 MsG0380014560.01.T01:CDS 30.0%
! ATTAAATGCAAAAGTGTGGA+GGG - Chr3:56497534-56497553 MsG0380014560.01.T01:intron 30.0%
! ATTAAATGCAAAAGTGTGGA+TGG - Chr3:56497534-56497553 MsG0380014560.01.T01:intron 30.0%
! ATTATTGGTGGTTCAATATC+TGG + Chr3:56496973-56496992 None:intergenic 30.0%
! GGGGTATTTGAATAATTTGA+GGG + Chr3:56499035-56499054 None:intergenic 30.0%
! TAAATCTGAGTTGAAACTAG+GGG - Chr3:56496603-56496622 MsG0380014560.01.T01:intron 30.0%
! TACATTTTATGCTCTCTTAG+AGG - Chr3:56497083-56497102 MsG0380014560.01.T01:intron 30.0%
! TGGGGTATTTGAATAATTTG+AGG + Chr3:56499036-56499055 None:intergenic 30.0%
! TTCTCTTTCTCTTTGTTTGT+AGG - Chr3:56495608-56495627 MsG0380014560.01.T01:intron 30.0%
!! CTTCTAAATTTGCTAAGCAT+TGG - Chr3:56497106-56497125 MsG0380014560.01.T01:intron 30.0%
!! TGATTAGTTTGTTACCTTGA+TGG + Chr3:56497229-56497248 None:intergenic 30.0%
!!! ACACCAACTACTTTTTATGA+AGG + Chr3:56496124-56496143 None:intergenic 30.0%
!!! CTCTAGTTTTCAAATGAATG+AGG + Chr3:56496722-56496741 None:intergenic 30.0%
!!! TGGTTAACTTTTAAGTTCGA+AGG - Chr3:56497357-56497376 MsG0380014560.01.T01:intron 30.0%
AAAGTGAAAATCACACCTTG+AGG + Chr3:56496075-56496094 None:intergenic 35.0%
ACAAAAAATGACCTATACGG+TGG - Chr3:56499608-56499627 MsG0380014560.01.T01:five_prime_UTR 35.0%
ACACACAAATATGTCCACTT+TGG + Chr3:56496941-56496960 None:intergenic 35.0%
ACCCAAAGAAGATGGAAAAT+GGG - Chr3:56495667-56495686 MsG0380014560.01.T01:intron 35.0%
ACCTTGAATCTCTTGCAAAA+TGG + Chr3:56497135-56497154 None:intergenic 35.0%
ACTCAATCTGTAAACCCAAA+TGG + Chr3:56495642-56495661 None:intergenic 35.0%
ACTGTTGCATCTAAAAGATG+GGG + Chr3:56498260-56498279 None:intergenic 35.0%
AGAAAAAGCCATTAAGACTC+GGG - Chr3:56497813-56497832 MsG0380014560.01.T01:CDS 35.0%
AGTAGAAAATGCATCCAAGT+TGG - Chr3:56498810-56498829 MsG0380014560.01.T01:intron 35.0%
AGTGGACATATTTGTGTGTA+CGG - Chr3:56496942-56496961 MsG0380014560.01.T01:intron 35.0%
AGTTACATACCCAAAGAAGA+TGG - Chr3:56495659-56495678 MsG0380014560.01.T01:intron 35.0%
ATTAAGAAAGATGGGGAAAG+AGG - Chr3:56495529-56495548 MsG0380014560.01.T01:intron 35.0%
ATTAATTGTGTGGAGAAAGG+AGG - Chr3:56497878-56497897 MsG0380014560.01.T01:CDS 35.0%
CACACAAATATGTCCACTTT+GGG + Chr3:56496940-56496959 None:intergenic 35.0%
CAGTTCATAAGATCTACCAT+TGG - Chr3:56498234-56498253 MsG0380014560.01.T01:intron 35.0%
CATTGAAAAAAGCCTTTGCA+GGG + Chr3:56497846-56497865 None:intergenic 35.0%
CGAAGCATACTCAAATCATA+AGG - Chr3:56498846-56498865 MsG0380014560.01.T01:intron 35.0%
GAAAATAGGGTTCCATCTAA+GGG + Chr3:56495753-56495772 None:intergenic 35.0%
GAAGGTAATCTTAATTGAGG+TGG + Chr3:56498171-56498190 None:intergenic 35.0%
GAGAAAAAGCCATTAAGACT+CGG - Chr3:56497812-56497831 MsG0380014560.01.T01:CDS 35.0%
GATGTATTCCAGTTGTTTGT+CGG + Chr3:56496269-56496288 None:intergenic 35.0%
GGATATAAAGGTAAGCTCTT+AGG - Chr3:56497323-56497342 MsG0380014560.01.T01:intron 35.0%
GTAGAAAATGCATCCAAGTT+GGG - Chr3:56498811-56498830 MsG0380014560.01.T01:intron 35.0%
GTGTCATCAATGATTAGCAA+TGG - Chr3:56499446-56499465 MsG0380014560.01.T01:five_prime_UTR 35.0%
GTGTTAATCACCATTATTGG+TGG + Chr3:56496985-56497004 None:intergenic 35.0%
TACCCAAAGAAGATGGAAAA+TGG - Chr3:56495666-56495685 MsG0380014560.01.T01:intron 35.0%
TATTTCCATAACATCGTCCT+TGG - Chr3:56497469-56497488 MsG0380014560.01.T01:intron 35.0%
TCATTGAAAAAAGCCTTTGC+AGG + Chr3:56497847-56497866 None:intergenic 35.0%
TGAAAATAGGGTTCCATCTA+AGG + Chr3:56495754-56495773 None:intergenic 35.0%
TGATTTGAGTATGCTTCGTT+CGG + Chr3:56498844-56498863 None:intergenic 35.0%
TGTGAAAGTCTTTCAGAGAA+GGG + Chr3:56495782-56495801 None:intergenic 35.0%
TTAATTGTGTGGAGAAAGGA+GGG - Chr3:56497879-56497898 MsG0380014560.01.T01:CDS 35.0%
TTCTTCATGGATGAAGAGAA+GGG - Chr3:56499539-56499558 MsG0380014560.01.T01:intron 35.0%
TTGTGAAAGTCTTTCAGAGA+AGG + Chr3:56495783-56495802 None:intergenic 35.0%
TTTCTTATAATAGTGACCGG+AGG + Chr3:56496291-56496310 None:intergenic 35.0%
! AACCCATTTTCCATCTTCTT+TGG + Chr3:56495672-56495691 None:intergenic 35.0%
! AAGAAGATGGAAAATGGGTT+TGG - Chr3:56495672-56495691 MsG0380014560.01.T01:intron 35.0%
! ACCCATTTTCCATCTTCTTT+GGG + Chr3:56495671-56495690 None:intergenic 35.0%
! ACTCAAGGTGTCTTATGAAA+AGG - Chr3:56495367-56495386 MsG0380014560.01.T01:CDS 35.0%
! ATAGAAGACACCTTTTGTGA+AGG + Chr3:56496186-56496205 None:intergenic 35.0%
! CAAAAGTGTGGATGGAAATT+AGG - Chr3:56497694-56497713 MsG0380014560.01.T01:intron 35.0%
! CATTAAATGCAAAAGTGTGG+AGG - Chr3:56497533-56497552 MsG0380014560.01.T01:intron 35.0%
! CATTGTTTGAAACAAGGAGA+GGG - Chr3:56495561-56495580 MsG0380014560.01.T01:intron 35.0%
! TCTCTGAAAGACTTTCACAA+AGG - Chr3:56495783-56495802 MsG0380014560.01.T01:CDS 35.0%
! TGTAGGAATTTGCTCCATTT+GGG - Chr3:56495625-56495644 MsG0380014560.01.T01:intron 35.0%
! TTAGATGGAACCCTATTTTC+AGG - Chr3:56495753-56495772 MsG0380014560.01.T01:CDS 35.0%
! TTGTAGGAATTTGCTCCATT+TGG - Chr3:56495624-56495643 MsG0380014560.01.T01:intron 35.0%
! TTTTATCAAGTCACACCTCA+AGG - Chr3:56496057-56496076 MsG0380014560.01.T01:CDS 35.0%
!! TGAATAATTTGAGGGTGTCT+GGG + Chr3:56499027-56499046 None:intergenic 35.0%
!! TTGAATAATTTGAGGGTGTC+TGG + Chr3:56499028-56499047 None:intergenic 35.0%
!!! GTGATATTTTCAAAGCACTG+AGG + Chr3:56499590-56499609 None:intergenic 35.0%
AACAACTGGAATACATCCTC+CGG - Chr3:56496272-56496291 MsG0380014560.01.T01:intron 40.0%
ACATGAAATTGCCTTTGTGC+AGG - Chr3:56499562-56499581 MsG0380014560.01.T01:five_prime_UTR 40.0%
AGAAGGGTTGCCTGAAAATA+GGG + Chr3:56495766-56495785 None:intergenic 40.0%
AGAGATTCAAGGTTGAACCT+AGG - Chr3:56497142-56497161 MsG0380014560.01.T01:intron 40.0%
AGCATCAATTGTTCCCCTAA+AGG - Chr3:56499379-56499398 MsG0380014560.01.T01:CDS 40.0%
AGCTGGAGCTATGAATTCAT+TGG - Chr3:56499240-56499259 MsG0380014560.01.T01:CDS 40.0%
ATAGGGTTGAGTGTAGTACA+AGG - Chr3:56498072-56498091 MsG0380014560.01.T01:intron 40.0%
ATCGACAGTCAACTATCGTT+GGG + Chr3:56499055-56499074 None:intergenic 40.0%
ATGGTCGAATCGAATTAGAG+AGG - Chr3:56498116-56498135 MsG0380014560.01.T01:intron 40.0%
CAAGTAAAGAACCACCGTAT+AGG + Chr3:56499622-56499641 None:intergenic 40.0%
CATTTGAAAACTAGAGGGCT+AGG - Chr3:56496726-56496745 MsG0380014560.01.T01:intron 40.0%
CGAATCGAATTAGAGAGGAA+AGG - Chr3:56498121-56498140 MsG0380014560.01.T01:intron 40.0%
CTACTCGACTTTCCATATCT+TGG + Chr3:56498795-56498814 None:intergenic 40.0%
CTTCTTCATGGATGAAGAGA+AGG - Chr3:56499538-56499557 MsG0380014560.01.T01:intron 40.0%
CTTTGTGCTGAACTATGGTT+TGG - Chr3:56495704-56495723 MsG0380014560.01.T01:intron 40.0%
GAAAATTGTCAGTGGCTTAG+TGG - Chr3:56497779-56497798 MsG0380014560.01.T01:CDS 40.0%
GACAATGCTAGAGATGAAGA+TGG - Chr3:56499151-56499170 MsG0380014560.01.T01:intron 40.0%
GATTGCTTTGTGCTGAACTA+TGG - Chr3:56495699-56495718 MsG0380014560.01.T01:intron 40.0%
GGAAATTAGGCGAGAGAATT+AGG - Chr3:56497555-56497574 MsG0380014560.01.T01:intron 40.0%
GTGTATCTTTCAGATGATGC+TGG - Chr3:56497051-56497070 MsG0380014560.01.T01:intron 40.0%
TAGGGTTAAGGATAGCTTGA+CGG - Chr3:56497931-56497950 MsG0380014560.01.T01:CDS 40.0%
TAGGGTTGAGTGTAGTACAA+GGG - Chr3:56498073-56498092 MsG0380014560.01.T01:intron 40.0%
TATGCCCACCTTGGTATATT+TGG - Chr3:56499180-56499199 MsG0380014560.01.T01:CDS 40.0%
TGGGTCAGATACTAAATGCA+AGG + Chr3:56498151-56498170 None:intergenic 40.0%
TGTACTACACTCAACCCTAT+TGG + Chr3:56498072-56498091 None:intergenic 40.0%
TTTGTAAAGGGCAAGTCGAT+TGG - Chr3:56496559-56496578 MsG0380014560.01.T01:intron 40.0%
! ATAGAGTGCCACAACATCAA+TGG - Chr3:56498097-56498116 MsG0380014560.01.T01:intron 40.0%
! CAAAAGTGTGGAGGGAAATT+AGG - Chr3:56497542-56497561 MsG0380014560.01.T01:intron 40.0%
! CCATTGTTTGAAACAAGGAG+AGG - Chr3:56495560-56495579 MsG0380014560.01.T01:intron 40.0%
! CCTCTCCTTGTTTCAAACAA+TGG + Chr3:56495563-56495582 None:intergenic 40.0%
! GATGGAAAATGGGTTTGGAT+TGG - Chr3:56495677-56495696 MsG0380014560.01.T01:intron 40.0%
! GTAGTGTGGTGTCTTTTACA+AGG - Chr3:56495962-56495981 MsG0380014560.01.T01:intron 40.0%
! TAAAGAGCTTTTGGCCATCA+AGG - Chr3:56497212-56497231 MsG0380014560.01.T01:intron 40.0%
! TTGATGGCCAAAAGCTCTTT+AGG + Chr3:56497213-56497232 None:intergenic 40.0%
! TTGGTGGTCAATGCAGATAA+GGG - Chr3:56499424-56499443 MsG0380014560.01.T01:exon 40.0%
! TTTGAAACAAGGAGAGGGAA+GGG - Chr3:56495566-56495585 MsG0380014560.01.T01:intron 40.0%
!! GCCATTTTGCAAGAGATTCA+AGG - Chr3:56497131-56497150 MsG0380014560.01.T01:intron 40.0%
AAATATGCACTTGGCGACCT+AGG + Chr3:56497162-56497181 None:intergenic 45.0%
ACGAGCCAAATATACCAAGG+TGG + Chr3:56499188-56499207 None:intergenic 45.0%
AGGGTTAAGGATAGCTTGAC+GGG - Chr3:56497932-56497951 MsG0380014560.01.T01:CDS 45.0%
AGGGTTGAGTGTAGTACAAG+GGG - Chr3:56498074-56498093 MsG0380014560.01.T01:intron 45.0%
CAGTACCAAGGACGATGTTA+TGG + Chr3:56497477-56497496 None:intergenic 45.0%
CATCTAAAAGATGGGGCCAA+TGG + Chr3:56498253-56498272 None:intergenic 45.0%
CGAGCCAAATATACCAAGGT+GGG + Chr3:56499187-56499206 None:intergenic 45.0%
CGATTCGACCATTGATGTTG+TGG + Chr3:56498108-56498127 None:intergenic 45.0%
CTCACGAGCCAAATATACCA+AGG + Chr3:56499191-56499210 None:intergenic 45.0%
GAGAAGGGTTGCCTGAAAAT+AGG + Chr3:56495767-56495786 None:intergenic 45.0%
GATCGACAGTCAACTATCGT+TGG + Chr3:56499056-56499075 None:intergenic 45.0%
GATTCGAACCCGAGTCTTAA+TGG + Chr3:56497824-56497843 None:intergenic 45.0%
GGATGCACTTTGCTTCTTCA+TGG - Chr3:56499526-56499545 MsG0380014560.01.T01:intron 45.0%
GGCAAGTCGATTGGAAGTTT+GGG - Chr3:56496568-56496587 MsG0380014560.01.T01:intron 45.0%
GTATTCCAGTTGTTTGTCGG+TGG + Chr3:56496266-56496285 None:intergenic 45.0%
GTTCGGTACTTTACCCAACT+TGG + Chr3:56498827-56498846 None:intergenic 45.0%
TCGACAGTCAACTATCGTTG+GGG + Chr3:56499054-56499073 None:intergenic 45.0%
! ATCTGAGTTGAAACTAGGGG+TGG - Chr3:56496606-56496625 MsG0380014560.01.T01:intron 45.0%
! GTTTGAAACAAGGAGAGGGA+AGG - Chr3:56495565-56495584 MsG0380014560.01.T01:intron 45.0%
!! GTTGGTGGTCAATGCAGATA+AGG - Chr3:56499423-56499442 MsG0380014560.01.T01:CDS 45.0%
!!! TGGTTTTGTTATGCCCACCT+TGG - Chr3:56499171-56499190 MsG0380014560.01.T01:intron 45.0%
!! TATATATATATATATATATG+AGG - Chr3:56495921-56495940 MsG0380014560.01.T01:intron 5.0%
!!! TAATTAATTAAATTTTGTTA+TGG + Chr3:56495821-56495840 None:intergenic 5.0%
GCTATCCACCGACAAACAAC+TGG - Chr3:56496258-56496277 MsG0380014560.01.T01:intron 50.0%
GGGCAAGTCGATTGGAAGTT+TGG - Chr3:56496567-56496586 MsG0380014560.01.T01:intron 50.0%
TAGGGTTCCATCTAAGGGCT+TGG + Chr3:56495748-56495767 None:intergenic 50.0%
TGAGAGCAAGCTACCCAAAG+TGG - Chr3:56496924-56496943 MsG0380014560.01.T01:intron 50.0%
TTGCGGCATAGCAGCCAATA+GGG - Chr3:56498055-56498074 MsG0380014560.01.T01:intron 50.0%
TTTGCGGCATAGCAGCCAAT+AGG - Chr3:56498054-56498073 MsG0380014560.01.T01:intron 50.0%
TCCATCTAAGGGCTTGGCGA+AGG + Chr3:56495742-56495761 None:intergenic 55.0%
TCCTTCGCCAAGCCCTTAGA+TGG - Chr3:56495738-56495757 MsG0380014560.01.T01:CDS 55.0%
TCGGGTTCGAATCCCTGCAA+AGG - Chr3:56497831-56497850 MsG0380014560.01.T01:CDS 55.0%
GCACTGAGGAGCCTGCACAA+AGG + Chr3:56499576-56499595 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 56495320 56499661 56495320 ID=MsG0380014560.01;Name=MsG0380014560.01
Chr3 mRNA 56495320 56499661 56495320 ID=MsG0380014560.01.T01;Parent=MsG0380014560.01;Name=MsG0380014560.01.T01;_AED=0.49;_eAED=0.49;_QI=198|1|0.83|1|0.8|0.66|6|0|356
Chr3 exon 56495320 56495541 56495320 ID=MsG0380014560.01.T01:exon:3089;Parent=MsG0380014560.01.T01
Chr3 exon 56495720 56495848 56495720 ID=MsG0380014560.01.T01:exon:3088;Parent=MsG0380014560.01.T01
Chr3 exon 56496057 56496197 56496057 ID=MsG0380014560.01.T01:exon:3087;Parent=MsG0380014560.01.T01
Chr3 exon 56497748 56498060 56497748 ID=MsG0380014560.01.T01:exon:3086;Parent=MsG0380014560.01.T01
Chr3 exon 56499177 56499531 56499177 ID=MsG0380014560.01.T01:exon:3085;Parent=MsG0380014560.01.T01
Chr3 exon 56499553 56499661 56499553 ID=MsG0380014560.01.T01:exon:3084;Parent=MsG0380014560.01.T01
Chr3 five_prime_UTR 56499553 56499661 56499553 ID=MsG0380014560.01.T01:five_prime_utr;Parent=MsG0380014560.01.T01
Chr3 five_prime_UTR 56499443 56499531 56499443 ID=MsG0380014560.01.T01:five_prime_utr;Parent=MsG0380014560.01.T01
Chr3 CDS 56499177 56499442 56499177 ID=MsG0380014560.01.T01:cds;Parent=MsG0380014560.01.T01
Chr3 CDS 56497748 56498060 56497748 ID=MsG0380014560.01.T01:cds;Parent=MsG0380014560.01.T01
Chr3 CDS 56496057 56496197 56496057 ID=MsG0380014560.01.T01:cds;Parent=MsG0380014560.01.T01
Chr3 CDS 56495720 56495848 56495720 ID=MsG0380014560.01.T01:cds;Parent=MsG0380014560.01.T01
Chr3 CDS 56495320 56495541 56495320 ID=MsG0380014560.01.T01:cds;Parent=MsG0380014560.01.T01
Gene Sequence

>MsG0380014560.01.T01

ATGGGGAAAGAGGAGCATTATCCATTGTTTGAAACAAGGAGAGGGAAGGGAAGACTCATGTACATAATATTCTCTTTCTCTTTGTTTGTAGGAATTTGCTCCATTTGGGTTTACAGATTGAGTTACATACCCAAAGAAGATGGAAAATGGGTTTGGATTGGATTGCTTTGTGCTGAACTATGGTTTGGTTTTTATTGGTTCCTTCGCCAAGCCCTTAGATGGAACCCTATTTTCAGGCAACCCTTCTCTGAAAGACTTTCACAAAGATATGAGAGCAAGCTACCCAAAGTGGACATATTTGTGTGTACGGCAAATCCAGATATTGAACCACCAATAATGGTGATTAACACAGTATTATCTGTGATGGCATATGATTATCAAACAGAGAAGCTTAGTGTGTATCTTTCAGATGATGCTGGATCAGATATTACATTTTATGCTCTCTTAGAGGCTTCTAAATTTGCTAAGCATTGGTTGCCATTTTGCAAGAGATTCAAGGTTGAACCTAGGTCGCCAAGTGCATATTTCAAGACTTTAGCTACTAACCCAAATAATCCTAAAGAGCTTTTGGCCATCAAGAGAATGTACCAAGATATGGAAAGTCGAGTAGAAAATGCATCCAAGTTGGGTAAAGTACCGAACGAAGCATACTCAAATCATAAGGAATTTTCTCAATGGGATTCATATTCATCAAGACGTGACCATGACACAATTCTTCAAATACTGCTTCATAGAAAGGACAATGCTAGAGATGAAGATGGTTTTGTTATGCCCACCTTGGTATATTTGGCTCGTGAGAAAAGACCCAAATTTCATCATAACTTCAAAGCTGGAGCTATGAATTCATTGATAAGGGTGTCATCAATGATTAGCAATGGGAAAATAATTCTCAATGTAGATTGCGACATGTACTCAAACAATTCTCAATCAATAAGGGATGCACTTTGCTTCTTCATGGATGAAGAGAAGGGACATGAAATTGCCTTTGTGCAGGCTCCTCAGTGCTTTGAAAATATCACAAAAAATGACCTATACGGTGGTTCTTTACTTGTAGCTTATGAGGTAAAGTAG

Protein sequence

>MsG0380014560.01.T01

MGKEEHYPLFETRRGKGRLMYIIFSFSLFVGICSIWVYRLSYIPKEDGKWVWIGLLCAELWFGFYWFLRQALRWNPIFRQPFSERLSQRYESKLPKVDIFVCTANPDIEPPIMVINTVLSVMAYDYQTEKLSVYLSDDAGSDITFYALLEASKFAKHWLPFCKRFKVEPRSPSAYFKTLATNPNNPKELLAIKRMYQDMESRVENASKLGKVPNEAYSNHKEFSQWDSYSSRRDHDTILQILLHRKDNARDEDGFVMPTLVYLAREKRPKFHHNFKAGAMNSLIRVSSMISNGKIILNVDCDMYSNNSQSIRDALCFFMDEEKGHEIAFVQAPQCFENITKNDLYGGSLLVAYEVK*