AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018658.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018658.01.T01 MTR_4g016510 91.827 208 9 1 18 217 64 271 5.12e-140 393
MsG0480018658.01.T01 MTR_7g068460 64.796 196 62 1 13 201 85 280 1.23e-93 276
MsG0480018658.01.T01 MTR_7g068530 68.586 191 53 2 18 202 64 253 4.94e-93 273
MsG0480018658.01.T01 MTR_4g016500 72.021 193 13 2 34 226 300 451 1.53e-88 269
MsG0480018658.01.T01 MTR_7g068500 64.921 191 60 1 18 201 89 279 2.86e-88 262
MsG0480018658.01.T01 MTR_7g068550 62.304 191 66 1 18 202 64 254 7.65e-88 260
MsG0480018658.01.T01 MTR_7g068470 63.874 191 61 2 18 201 59 248 3.58e-85 253
MsG0480018658.01.T01 MTR_3g070460 58.706 201 75 1 10 202 56 256 5.13e-84 250
MsG0480018658.01.T01 MTR_7g068470 62.304 191 60 3 18 201 59 244 5.99e-81 242
MsG0480018658.01.T01 MTR_7g068450 55.789 190 76 2 21 202 66 255 4.82e-70 215
MsG0480018658.01.T01 MTR_2g015500 34.104 173 100 3 17 179 67 235 4.19e-29 109
MsG0480018658.01.T01 MTR_4g105680 33.333 171 93 3 23 178 93 257 3.13e-27 105
MsG0480018658.01.T01 MTR_2g015510 35.664 143 82 2 23 155 72 214 3.34e-27 104
MsG0480018658.01.T01 MTR_7g068520 42.553 141 38 2 61 201 56 153 5.37e-26 99.0
MsG0480018658.01.T01 MTR_2g015480 28.276 145 75 4 23 155 126 253 5.50e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018658.01.T01 AT3G11210 60.622 193 68 1 18 202 64 256 2.79e-83 249
MsG0480018658.01.T01 AT2G38180 54.271 199 76 4 10 200 56 247 9.41e-69 214
MsG0480018658.01.T01 AT5G62930 33.136 169 96 2 23 178 7 171 2.04e-30 111
MsG0480018658.01.T01 AT5G45920 37.931 145 80 2 21 155 67 211 4.77e-30 112
MsG0480018658.01.T01 AT5G45920 37.931 145 80 2 21 155 67 211 4.77e-30 112
MsG0480018658.01.T01 AT5G62930 33.136 169 96 2 23 178 65 229 8.21e-30 111
MsG0480018658.01.T01 AT5G62930 33.136 169 96 2 23 178 91 255 1.59e-29 111
MsG0480018658.01.T01 AT5G45920 36.364 121 67 2 21 131 67 187 4.45e-22 90.1
MsG0480018658.01.T01 AT5G45920 36.364 121 67 2 21 131 67 187 4.45e-22 90.1

Find 67 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCAAATTCATGAAACTTTC+AGG 0.099366 4:-8139394 MsG0480018658.01.T01:intron
AAAAGTATTTGAAATGATTT+TGG 0.099467 4:-8137937 MsG0480018658.01.T01:three_prime_UTR
TTTCCCATTCAAAATGTTTC+TGG 0.167567 4:+8138051 None:intergenic
CTAGAAATTTGAAAACTAAA+AGG 0.320289 4:+8137757 None:intergenic
GAATCTTCTGCAAACTCATT+TGG 0.330143 4:+8138134 None:intergenic
TGACAGCTGATTCTTCAAAT+TGG 0.333543 4:+8137991 None:intergenic
GAAGATTATTATCCATCTTA+AGG 0.337002 4:-8139551 MsG0480018658.01.T01:intron
CACTTCAGCAAAGGGATGAT+TGG 0.375551 4:-8138518 MsG0480018658.01.T01:CDS
TGCTGTTGAGCAACCATCAT+TGG 0.380272 4:-8139668 MsG0480018658.01.T01:CDS
ACTTTATTCAGAAGCATGTT+TGG 0.381551 4:-8138586 MsG0480018658.01.T01:CDS
AACTCGGTTATAGACCTTGC+TGG 0.392774 4:+8137964 None:intergenic
TGAATTTGCGCCTCGTTGAC+TGG 0.414334 4:+8139407 None:intergenic
TCTATAGCAACTGGATCATA+TGG 0.419003 4:+8138110 None:intergenic
CATCCACATCCATCTGGCCT+TGG 0.424382 4:-8139613 MsG0480018658.01.T01:CDS
GTGATGACCATTCGATGGTT+TGG 0.432977 4:+8138013 None:intergenic
ATTGATTTCCAGTGTAGACT+TGG 0.433496 4:+8138158 None:intergenic
CTACTGTCAACGTCTCCAAC+TGG 0.445232 4:-8138079 MsG0480018658.01.T01:CDS
AAAGTTATATCACGTTTATG+AGG 0.453775 4:-8137911 MsG0480018658.01.T01:three_prime_UTR
TTTAACGAGTGCCCCTCCCC+AGG 0.463867 4:-8137852 MsG0480018658.01.T01:three_prime_UTR
GGTTCCAGTCCGCGTCTTCG+AGG 0.470091 4:+8138180 None:intergenic
CTGGTCTTCACTTCAGCAAA+GGG 0.485590 4:-8138526 MsG0480018658.01.T01:CDS
AGGTCCTCGAAGACGCGGAC+TGG 0.489794 4:-8138184 MsG0480018658.01.T01:CDS
CATAAGCGATACATGAGACT+TGG 0.497698 4:+8139922 None:intergenic
ATGTCAAGGCCATTGACCTC+TGG 0.499532 4:-8138545 MsG0480018658.01.T01:CDS
TCTATTCATCCACATCCATC+TGG 0.500776 4:-8139619 MsG0480018658.01.T01:CDS
AAAATGTTAACGAGTTCCCC+TGG 0.501635 4:+8137834 None:intergenic
TCATTGGTTATTGTGTACTT+TGG 0.504240 4:-8139652 MsG0480018658.01.T01:CDS
TTGGTTATTGTGTACTTTGG+TGG 0.509027 4:-8139649 MsG0480018658.01.T01:CDS
TTGATTTCCAGTGTAGACTT+GGG 0.516004 4:+8138159 None:intergenic
AAGTACACAATAACCAATGA+TGG 0.517361 4:+8139655 None:intergenic
TTATGCGAGTCTTCTTCGAC+AGG 0.520334 4:+8139447 None:intergenic
ACATGAGGGGAGCAAGATAG+TGG 0.525614 4:-8138222 MsG0480018658.01.T01:CDS
TGTGGAATTCAACCTTAAGA+TGG 0.529846 4:+8139539 None:intergenic
CTGGACGGGATGGATGGAAC+CGG 0.535331 4:-8139952 None:intergenic
TAACGAGTTCCCCTGGGGAG+GGG 0.539888 4:+8137841 None:intergenic
AATTGGTGATGACCATTCGA+TGG 0.544305 4:+8138008 None:intergenic
TGGAATTCATTTGTCACATG+AGG 0.553987 4:-8138237 MsG0480018658.01.T01:CDS
TTAACGAGTTCCCCTGGGGA+GGG 0.559194 4:+8137840 None:intergenic
TTAACGAGTGCCCCTCCCCA+GGG 0.559737 4:-8137851 MsG0480018658.01.T01:three_prime_UTR
CATGAGACTTGGATAATCTC+CGG 0.560637 4:+8139933 None:intergenic
AAGTGAAGACCAGAGGTCAA+TGG 0.560897 4:+8138536 None:intergenic
ACATGAGGACCAAGGCCAGA+TGG 0.572819 4:+8139604 None:intergenic
TCTGGTCTTCACTTCAGCAA+AGG 0.575159 4:-8138527 MsG0480018658.01.T01:CDS
TGCATTGCCAAACCATCGAA+TGG 0.575363 4:-8138020 MsG0480018658.01.T01:CDS
GGACCAAGGCCAGATGGATG+TGG 0.575529 4:+8139610 None:intergenic
TGCTTCTGAATAAAGTCCAC+AGG 0.579072 4:+8138593 None:intergenic
GGAATTCATTTGTCACATGA+GGG 0.579430 4:-8138236 MsG0480018658.01.T01:CDS
TGGCCTTGACATTCATCTCA+TGG 0.580073 4:+8138556 None:intergenic
AGTGGTAAAAGAGATATTGA+AGG 0.582012 4:-8138204 MsG0480018658.01.T01:CDS
AAATGTTAACGAGTTCCCCT+GGG 0.586437 4:+8137835 None:intergenic
ATGTTTCTGGAAGTTCCAGT+TGG 0.594171 4:+8138064 None:intergenic
ACTGGAACCCAAGTCTACAC+TGG 0.596478 4:-8138166 MsG0480018658.01.T01:CDS
GTGATACTGGACGGGATGGA+TGG 0.600065 4:-8139958 None:intergenic
GTTAACGAGTTCCCCTGGGG+AGG 0.610846 4:+8137839 None:intergenic
GAATTCATTTGTCACATGAG+GGG 0.641928 4:-8138235 MsG0480018658.01.T01:CDS
TATTCTTCAAGGGGTACATG+AGG 0.652455 4:+8139589 None:intergenic
AAGAGGACAAATGAATCCTG+TGG 0.654572 4:-8138609 MsG0480018658.01.T01:intron
ATTGAAGGTCCTCGAAGACG+CGG 0.659263 4:-8138189 MsG0480018658.01.T01:CDS
ATTTGCGCCTCGTTGACTGG+AGG 0.661668 4:+8139410 None:intergenic
TCAGCTGTCACAAACCAGCA+AGG 0.667249 4:-8137978 MsG0480018658.01.T01:CDS
TACTTACGTGAAGCAAACAT+CGG 0.669235 4:+8138494 None:intergenic
CAGTTCTCCTCCAGTCAACG+AGG 0.676220 4:-8139417 MsG0480018658.01.T01:CDS
TAACGAGTGCCCCTCCCCAG+GGG 0.686128 4:-8137850 MsG0480018658.01.T01:three_prime_UTR
TTTGCTGAAGTGAAGACCAG+AGG 0.691802 4:+8138529 None:intergenic
GTGCCATGAGATGAATGTCA+AGG 0.713777 4:-8138559 MsG0480018658.01.T01:CDS
CAAGGGGTACATGAGGACCA+AGG 0.723393 4:+8139596 None:intergenic
AATGTTAACGAGTTCCCCTG+GGG 0.752237 4:+8137836 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATATGATTAAAAAATG+TGG + Chr4:8139368-8139387 None:intergenic 10.0%
!! AACTCTAATGAATAAATTAT+TGG - Chr4:8139050-8139069 MsG0480018658.01.T01:intron 15.0%
!! CTAAATATGATGTAAAATTA+GGG + Chr4:8137939-8137958 None:intergenic 15.0%
!! TCTAAATATGATGTAAAATT+AGG + Chr4:8137940-8137959 None:intergenic 15.0%
!! TGTAAAAAGAAAATCAAAAT+TGG + Chr4:8138999-8139018 None:intergenic 15.0%
!!! AAAAGTATTTGAAATGATTT+TGG - Chr4:8139775-8139794 MsG0480018658.01.T01:intron 15.0%
!!! AAAGTATTTGAAATGATTTT+GGG - Chr4:8139776-8139795 MsG0480018658.01.T01:intron 15.0%
!!! CATATTTTTCTATAGTATTA+AGG - Chr4:8139379-8139398 MsG0480018658.01.T01:intron 15.0%
!!! TAATAAAAGTATAACAGAAT+AGG - Chr4:8138458-8138477 MsG0480018658.01.T01:intron 15.0%
!!! TCATTTTCTGAAATTATTAT+TGG - Chr4:8138685-8138704 MsG0480018658.01.T01:intron 15.0%
!! AAAAGTTACATGAGATATAT+TGG - Chr4:8138845-8138864 MsG0480018658.01.T01:intron 20.0%
!! ACTTAAAGCAGTAATATATT+GGG - Chr4:8139073-8139092 MsG0480018658.01.T01:intron 20.0%
!! ATTTCTATCTTTATATCCAA+TGG + Chr4:8137846-8137865 None:intergenic 20.0%
!! TACATACAAGTCTTAAAAAT+AGG - Chr4:8139261-8139280 MsG0480018658.01.T01:intron 20.0%
!!! AATATATCTCATGTAACTTT+TGG + Chr4:8138846-8138865 None:intergenic 20.0%
!!! GTAAAAAAAATGGTACATTT+TGG - Chr4:8138488-8138507 MsG0480018658.01.T01:intron 20.0%
! AAAGTTATATCACGTTTATG+AGG - Chr4:8139801-8139820 MsG0480018658.01.T01:intron 25.0%
! AATATGATGTAAAATTAGGG+AGG + Chr4:8137936-8137955 None:intergenic 25.0%
! AGGACATAAGGTAAAAAAAA+TGG - Chr4:8138478-8138497 MsG0480018658.01.T01:intron 25.0%
! ATATGATGTAAAATTAGGGA+GGG + Chr4:8137935-8137954 None:intergenic 25.0%
! GAAGATTATTATCCATCTTA+AGG - Chr4:8138161-8138180 MsG0480018658.01.T01:CDS 25.0%
! GACTTAAAGCAGTAATATAT+TGG - Chr4:8139072-8139091 MsG0480018658.01.T01:intron 25.0%
! TCTTAAATGGTATCTAGTTA+AGG + Chr4:8138395-8138414 None:intergenic 25.0%
! TGATTATTCGTCATACTTAA+AGG - Chr4:8137985-8138004 MsG0480018658.01.T01:CDS 25.0%
! TTCAAACTTATACATTTGTC+CGG - Chr4:8139436-8139455 MsG0480018658.01.T01:CDS 25.0%
!! ACAAAAGAGAATATGAGTTT+TGG - Chr4:8138431-8138450 MsG0480018658.01.T01:intron 25.0%
!! ATTTTCTCTGTATTCTTCAA+GGG + Chr4:8138136-8138155 None:intergenic 25.0%
!! TAAAAAAAACAGTGATAGTG+TGG + Chr4:8138194-8138213 None:intergenic 25.0%
!! TATTTTCTCTGTATTCTTCA+AGG + Chr4:8138137-8138156 None:intergenic 25.0%
!! TCAAATACTTTTCTTGAACT+CGG + Chr4:8139767-8139786 None:intergenic 25.0%
AACATAGAGGTTATAAGCTA+TGG + Chr4:8138750-8138769 None:intergenic 30.0%
AAGTACACAATAACCAATGA+TGG + Chr4:8138060-8138079 None:intergenic 30.0%
AATGGTATCTAGTTAAGGTA+TGG + Chr4:8138390-8138409 None:intergenic 30.0%
ACATAGAGGTTATAAGCTAT+GGG + Chr4:8138749-8138768 None:intergenic 30.0%
AGTGGTAAAAGAGATATTGA+AGG - Chr4:8139508-8139527 MsG0480018658.01.T01:intron 30.0%
CAATGTTTGACTAATCCTAA+TGG - Chr4:8138233-8138252 MsG0480018658.01.T01:CDS 30.0%
CTAGATACCATTTAAGAAAC+AGG - Chr4:8138398-8138417 MsG0480018658.01.T01:intron 30.0%
GCTTATATGAAGCTTAATTG+CGG + Chr4:8139336-8139355 None:intergenic 30.0%
GTATAACAGAATAGGACATA+AGG - Chr4:8138466-8138485 MsG0480018658.01.T01:intron 30.0%
TTATCAGCAATGAACCTAAA+TGG + Chr4:8138588-8138607 None:intergenic 30.0%
TTGAAGATCACAAAGCAAAA+TGG + Chr4:8138017-8138036 None:intergenic 30.0%
TTTCCCATTCAAAATGTTTC+TGG + Chr4:8139664-8139683 None:intergenic 30.0%
! ACCACATGTGTCTTATTAAA+AGG - Chr4:8139413-8139432 MsG0480018658.01.T01:CDS 30.0%
! ACCTTTTAATAAGACACATG+TGG + Chr4:8139417-8139436 None:intergenic 30.0%
! ACTTCCAGAAACATTTTGAA+TGG - Chr4:8139657-8139676 MsG0480018658.01.T01:CDS 30.0%
! ACTTTATTCAGAAGCATGTT+TGG - Chr4:8139126-8139145 MsG0480018658.01.T01:intron 30.0%
! CTTCCAGAAACATTTTGAAT+GGG - Chr4:8139658-8139677 MsG0480018658.01.T01:CDS 30.0%
! GTTCTAACCTGTTTCTTAAA+TGG + Chr4:8138408-8138427 None:intergenic 30.0%
! TCATTGGTTATTGTGTACTT+TGG - Chr4:8138060-8138079 MsG0480018658.01.T01:CDS 30.0%
! TTTTCTCTGTATTCTTCAAG+GGG + Chr4:8138135-8138154 None:intergenic 30.0%
AAATAAATGCGCCATTTGTG+GGG + Chr4:8138781-8138800 None:intergenic 35.0%
ATATATTGGGACCACTAAAG+AGG - Chr4:8139086-8139105 MsG0480018658.01.T01:intron 35.0%
CGCAAATTCATGAAACTTTC+AGG - Chr4:8138318-8138337 MsG0480018658.01.T01:intron 35.0%
GAAATAAATGCGCCATTTGT+GGG + Chr4:8138782-8138801 None:intergenic 35.0%
GAATCTTCTGCAAACTCATT+TGG + Chr4:8139581-8139600 None:intergenic 35.0%
GAATTCATTTGTCACATGAG+GGG - Chr4:8139477-8139496 MsG0480018658.01.T01:intron 35.0%
GATTCATTTGTCCTCTTTAG+TGG + Chr4:8139100-8139119 None:intergenic 35.0%
GGAATTCATTTGTCACATGA+GGG - Chr4:8139476-8139495 MsG0480018658.01.T01:intron 35.0%
TACTTACGTGAAGCAAACAT+CGG + Chr4:8139221-8139240 None:intergenic 35.0%
TCTATAGCAACTGGATCATA+TGG + Chr4:8139605-8139624 None:intergenic 35.0%
TGAAATAAATGCGCCATTTG+TGG + Chr4:8138783-8138802 None:intergenic 35.0%
TGATATTGCAGCTGCAATTT+CGG + Chr4:8139294-8139313 None:intergenic 35.0%
TGATTGTGTCTGCAAAATCA+AGG - Chr4:8138902-8138921 MsG0480018658.01.T01:intron 35.0%
TGGAATTCATTTGTCACATG+AGG - Chr4:8139475-8139494 MsG0480018658.01.T01:intron 35.0%
TGTAAAATTAGGGAGGGATT+TGG + Chr4:8137929-8137948 None:intergenic 35.0%
TGTGGAATTCAACCTTAAGA+TGG + Chr4:8138176-8138195 None:intergenic 35.0%
TTGATTTCCAGTGTAGACTT+GGG + Chr4:8139556-8139575 None:intergenic 35.0%
TTGGTTATTGTGTACTTTGG+TGG - Chr4:8138063-8138082 MsG0480018658.01.T01:CDS 35.0%
! ATTGATTTCCAGTGTAGACT+TGG + Chr4:8139557-8139576 None:intergenic 35.0%
! GTAACTTTATGTGTCGACAT+CGG + Chr4:8138653-8138672 None:intergenic 35.0%
! GTCTTTTCATCTATAGCAAC+TGG + Chr4:8139614-8139633 None:intergenic 35.0%
! TCTCATGTAACTTTTGGTCA+TGG + Chr4:8138840-8138859 None:intergenic 35.0%
! TGACAGCTGATTCTTCAAAT+TGG + Chr4:8139724-8139743 None:intergenic 35.0%
! TGATTTTGCAGACACAATCA+CGG + Chr4:8138902-8138921 None:intergenic 35.0%
! TTGTCCGGTTGTGTTTTATA+GGG - Chr4:8139451-8139470 MsG0480018658.01.T01:CDS 35.0%
! TTTGTCCGGTTGTGTTTTAT+AGG - Chr4:8139450-8139469 MsG0480018658.01.T01:CDS 35.0%
!! TGAGATATATTGGTCTTCAG+AGG - Chr4:8138855-8138874 MsG0480018658.01.T01:intron 35.0%
AAAATGTTAACGAGTTCCCC+TGG + Chr4:8139881-8139900 None:intergenic 40.0%
AAATGTTAACGAGTTCCCCT+GGG + Chr4:8139880-8139899 None:intergenic 40.0%
AAGAGGACAAATGAATCCTG+TGG - Chr4:8139103-8139122 MsG0480018658.01.T01:intron 40.0%
AATAAATGCGCCATTTGTGG+GGG + Chr4:8138780-8138799 None:intergenic 40.0%
ACCTAAATGGTGTTTGACGA+CGG + Chr4:8138575-8138594 None:intergenic 40.0%
ATCGCTTATGCATATCTGTG+TGG - Chr4:8137803-8137822 MsG0480018658.01.T01:three_prime_UTR 40.0%
CATAAGCGATACATGAGACT+TGG + Chr4:8137793-8137812 None:intergenic 40.0%
CATGAGACTTGGATAATCTC+CGG + Chr4:8137782-8137801 None:intergenic 40.0%
CCATCCCTATAAAACACAAC+CGG + Chr4:8139458-8139477 None:intergenic 40.0%
TCTATTCATCCACATCCATC+TGG - Chr4:8138093-8138112 MsG0480018658.01.T01:CDS 40.0%
TGCTTCTGAATAAAGTCCAC+AGG + Chr4:8139122-8139141 None:intergenic 40.0%
TTGACGACGGACAACAAAAT+GGG + Chr4:8138562-8138581 None:intergenic 40.0%
TTTGACGACGGACAACAAAA+TGG + Chr4:8138563-8138582 None:intergenic 40.0%
! AAAATCAAGGTTTTCGCCTC+TGG - Chr4:8138915-8138934 MsG0480018658.01.T01:intron 40.0%
! AAATCAAGGTTTTCGCCTCT+GGG - Chr4:8138916-8138935 MsG0480018658.01.T01:intron 40.0%
! GGTTCTGATTGCAATGACTT+TGG - Chr4:8138339-8138358 MsG0480018658.01.T01:intron 40.0%
! TATTCTTCAAGGGGTACATG+AGG + Chr4:8138126-8138145 None:intergenic 40.0%
!! AATTGGTGATGACCATTCGA+TGG + Chr4:8139707-8139726 None:intergenic 40.0%
!! ATGTTTCTGGAAGTTCCAGT+TGG + Chr4:8139651-8139670 None:intergenic 40.0%
AACTCGGTTATAGACCTTGC+TGG + Chr4:8139751-8139770 None:intergenic 45.0%
AAGTGAAGACCAGAGGTCAA+TGG + Chr4:8139179-8139198 None:intergenic 45.0%
AATGTTAACGAGTTCCCCTG+GGG + Chr4:8139879-8139898 None:intergenic 45.0%
ATGGGCACTAACACATGCAT+TGG + Chr4:8138731-8138750 None:intergenic 45.0%
CACTTCAGCAAAGGGATGAT+TGG - Chr4:8139194-8139213 MsG0480018658.01.T01:intron 45.0%
GTGATGACCATTCGATGGTT+TGG + Chr4:8139702-8139721 None:intergenic 45.0%
GTGCCATGAGATGAATGTCA+AGG - Chr4:8139153-8139172 MsG0480018658.01.T01:intron 45.0%
GTTGTATCTTCCCCCACAAA+TGG - Chr4:8138767-8138786 MsG0480018658.01.T01:intron 45.0%
TCCGTCGTCAAACACCATTT+AGG - Chr4:8138571-8138590 MsG0480018658.01.T01:CDS 45.0%
TGCAGACACAATCACGGTTA+TGG + Chr4:8138896-8138915 None:intergenic 45.0%
TGCATATCTGTGTGGTGCAT+CGG - Chr4:8137811-8137830 MsG0480018658.01.T01:three_prime_UTR 45.0%
TGCATTGCCAAACCATCGAA+TGG - Chr4:8139692-8139711 MsG0480018658.01.T01:intron 45.0%
TGCTGTTGAGCAACCATCAT+TGG - Chr4:8138044-8138063 MsG0480018658.01.T01:CDS 45.0%
TGGGGGAAGATACAACATAG+AGG + Chr4:8138763-8138782 None:intergenic 45.0%
TTATGCGAGTCTTCTTCGAC+AGG + Chr4:8138268-8138287 None:intergenic 45.0%
TTTGCTGAAGTGAAGACCAG+AGG + Chr4:8139186-8139205 None:intergenic 45.0%
! AATCAAGGTTTTCGCCTCTG+GGG - Chr4:8138917-8138936 MsG0480018658.01.T01:intron 45.0%
! CCGGTTGTGTTTTATAGGGA+TGG - Chr4:8139455-8139474 MsG0480018658.01.T01:intron 45.0%
! CTGGTCTTCACTTCAGCAAA+GGG - Chr4:8139186-8139205 MsG0480018658.01.T01:intron 45.0%
! TATGTGTCGACATCGGTATC+TGG + Chr4:8138646-8138665 None:intergenic 45.0%
! TCTGGTCTTCACTTCAGCAA+AGG - Chr4:8139185-8139204 MsG0480018658.01.T01:intron 45.0%
! TGGCCTTGACATTCATCTCA+TGG + Chr4:8139159-8139178 None:intergenic 45.0%
!!! TTATTTTGATAATAAATAAA+AGG + Chr4:8139904-8139923 None:intergenic 5.0%
ACATGAGGGGAGCAAGATAG+TGG - Chr4:8139490-8139509 MsG0480018658.01.T01:intron 50.0%
ACTGGAACCCAAGTCTACAC+TGG - Chr4:8139546-8139565 MsG0480018658.01.T01:intron 50.0%
ATGTCAAGGCCATTGACCTC+TGG - Chr4:8139167-8139186 MsG0480018658.01.T01:intron 50.0%
ATTGAAGGTCCTCGAAGACG+CGG - Chr4:8139523-8139542 MsG0480018658.01.T01:intron 50.0%
CTACTGTCAACGTCTCCAAC+TGG - Chr4:8139633-8139652 MsG0480018658.01.T01:CDS 50.0%
GACAGGCTCTGCAAACCATT+AGG + Chr4:8138251-8138270 None:intergenic 50.0%
GATCCTCTTCAGCTTCTGCA+TGG + Chr4:8137907-8137926 None:intergenic 50.0%
TCAGCTGTCACAAACCAGCA+AGG - Chr4:8139734-8139753 MsG0480018658.01.T01:intron 50.0%
TCTTCAGCTTCTGCATGGTG+CGG + Chr4:8137902-8137921 None:intergenic 50.0%
TGAATTTGCGCCTCGTTGAC+TGG + Chr4:8138308-8138327 None:intergenic 50.0%
! GCATCGACACTGCAGATCAA+AGG - Chr4:8138616-8138635 MsG0480018658.01.T01:intron 50.0%
!! GCATCGGCTTGTAGAACCAT+TGG - Chr4:8137827-8137846 MsG0480018658.01.T01:three_prime_UTR 50.0%
!!! TTTTCGCCTCTGGGGCTTTT+GGG - Chr4:8138925-8138944 MsG0480018658.01.T01:intron 50.0%
ACATGAGGACCAAGGCCAGA+TGG + Chr4:8138111-8138130 None:intergenic 55.0%
CAGTTCTCCTCCAGTCAACG+AGG - Chr4:8138295-8138314 MsG0480018658.01.T01:intron 55.0%
CATCCACATCCATCTGGCCT+TGG - Chr4:8138099-8138118 MsG0480018658.01.T01:CDS 55.0%
GCACCATGCAGAAGCTGAAG+AGG - Chr4:8137901-8137920 MsG0480018658.01.T01:three_prime_UTR 55.0%
TTAACGAGTTCCCCTGGGGA+GGG + Chr4:8139875-8139894 None:intergenic 55.0%
! ATTTGCGCCTCGTTGACTGG+AGG + Chr4:8138305-8138324 None:intergenic 55.0%
! CAAGGGGTACATGAGGACCA+AGG + Chr4:8138119-8138138 None:intergenic 55.0%
!!! GTTTTCGCCTCTGGGGCTTT+TGG - Chr4:8138924-8138943 MsG0480018658.01.T01:intron 55.0%
GGACCAAGGCCAGATGGATG+TGG + Chr4:8138105-8138124 None:intergenic 60.0%
GTTAACGAGTTCCCCTGGGG+AGG + Chr4:8139876-8139895 None:intergenic 60.0%
TAACGAGTTCCCCTGGGGAG+GGG + Chr4:8139874-8139893 None:intergenic 60.0%
TTAACGAGTGCCCCTCCCCA+GGG - Chr4:8139861-8139880 MsG0480018658.01.T01:intron 60.0%
TTTAACGAGTGCCCCTCCCC+AGG - Chr4:8139860-8139879 MsG0480018658.01.T01:intron 60.0%
!! CTGCAGTGTCGATGCTGCGT+AGG + Chr4:8138611-8138630 None:intergenic 60.0%
ACGACGCCCAAAAGCCCCAG+AGG + Chr4:8138934-8138953 None:intergenic 65.0%
AGGTCCTCGAAGACGCGGAC+TGG - Chr4:8139528-8139547 MsG0480018658.01.T01:intron 65.0%
GGTTCCAGTCCGCGTCTTCG+AGG + Chr4:8139535-8139554 None:intergenic 65.0%
TAACGAGTGCCCCTCCCCAG+GGG - Chr4:8139862-8139881 MsG0480018658.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 8137769 8139965 8137769 ID=MsG0480018658.01;Name=MsG0480018658.01
Chr4 mRNA 8137769 8139965 8137769 ID=MsG0480018658.01.T01;Parent=MsG0480018658.01;Name=MsG0480018658.01.T01;_AED=0.39;_eAED=0.39;_QI=0|0.5|0.6|1|1|1|5|202|228
Chr4 exon 8137769 8138262 8137769 ID=MsG0480018658.01.T01:exon:2631;Parent=MsG0480018658.01.T01
Chr4 exon 8138501 8138626 8138501 ID=MsG0480018658.01.T01:exon:2630;Parent=MsG0480018658.01.T01
Chr4 exon 8139395 8139471 8139395 ID=MsG0480018658.01.T01:exon:2629;Parent=MsG0480018658.01.T01
Chr4 exon 8139552 8139692 8139552 ID=MsG0480018658.01.T01:exon:2628;Parent=MsG0480018658.01.T01
Chr4 exon 8139915 8139965 8139915 ID=MsG0480018658.01.T01:exon:2627;Parent=MsG0480018658.01.T01
Chr4 CDS 8139915 8139965 8139915 ID=MsG0480018658.01.T01:cds;Parent=MsG0480018658.01.T01
Chr4 CDS 8139552 8139692 8139552 ID=MsG0480018658.01.T01:cds;Parent=MsG0480018658.01.T01
Chr4 CDS 8139395 8139471 8139395 ID=MsG0480018658.01.T01:cds;Parent=MsG0480018658.01.T01
Chr4 CDS 8138501 8138626 8138501 ID=MsG0480018658.01.T01:cds;Parent=MsG0480018658.01.T01
Chr4 CDS 8137971 8138262 8137971 ID=MsG0480018658.01.T01:cds;Parent=MsG0480018658.01.T01
Chr4 three_prime_UTR 8137769 8137970 8137769 ID=MsG0480018658.01.T01:three_prime_utr;Parent=MsG0480018658.01.T01
Gene Sequence

>MsG0480018658.01.T01

ATGGATGGAACCGGAGATTATCCAAGTCTCATGTATCGCTTATGCATATCTAATGCTGTTGAGCAACCATCATTGGTTATTGTGTACTTTGGTGGCAATGATTCTATTCATCCACATCCATCTGGCCTTGGTCCTCATGTACCCCTTGAAGAATACAGAGAAAATATGAAGAAGATTATTATCCATCTTAAGAGCCTGTCGAAGAAGACTCGCATAATATTGCTCAGTTCTCCTCCAGTCAACGAGGCGCAAATTCATGAAACTTTCAGGACAAATGAATCCTGTGGACTTTATTCAGAAGCATGTTTGGAGTTGTGCCATGAGATGAATGTCAAGGCCATTGACCTCTGGTCTTCACTTCAGCAAAGGGATGATTGGTCCGATGTTTGCTTCACGGATGGAATTCATTTGTCACATGAGGGGAGCAAGATAGTGGTAAAAGAGATATTGAAGGTCCTCGAAGACGCGGACTGGAACCCAAGTCTACACTGGAAATCAATGCCAAATGAGTTTGCAGAAGATTCGCCATATGATCCAGTTGCTATAGATGAAAAGACTACTGTCAACGTCTCCAACTGGAACTTCCAGAAACATTTTGAATGGGAAAAAGCTTTATGCATTGCCAAACCATCGAATGGTCATCACCAATTTGAAGAATCAGCTGTCACAAACCAGCAAGGTCTATAA

Protein sequence

>MsG0480018658.01.T01

MDGTGDYPSLMYRLCISNAVEQPSLVIVYFGGNDSIHPHPSGLGPHVPLEEYRENMKKIIIHLKSLSKKTRIILLSSPPVNEAQIHETFRTNESCGLYSEACLELCHEMNVKAIDLWSSLQQRDDWSDVCFTDGIHLSHEGSKIVVKEILKVLEDADWNPSLHWKSMPNEFAEDSPYDPVAIDEKTTVNVSNWNFQKHFEWEKALCIAKPSNGHHQFEESAVTNQQGL*