AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040701.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040701.01.T01 MTR_7g096120 66.667 207 31 5 19 187 297 503 3.20e-85 260
MsG0780040701.01.T01 MTR_7g096140 66.216 148 16 4 29 142 311 458 1.48e-54 179
MsG0780040701.01.T01 MTR_4g077070 37.688 199 89 5 14 179 321 517 1.82e-37 135
MsG0780040701.01.T01 MTR_1995s0010 54.128 109 16 3 29 103 115 223 2.28e-24 95.5
MsG0780040701.01.T01 MTR_4g080100 35.294 153 86 1 20 159 278 430 1.45e-23 96.7
MsG0780040701.01.T01 MTR_2g015690 37.500 128 69 1 42 158 279 406 1.40e-19 85.5
MsG0780040701.01.T01 MTR_4g087810 37.143 140 72 4 42 172 270 402 1.90e-19 85.1
MsG0780040701.01.T01 MTR_4g087830 34.532 139 77 3 42 172 261 393 2.51e-17 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040701.01.T01 AT2G30550 42.553 188 75 4 26 181 339 525 8.00e-39 139
MsG0780040701.01.T01 AT1G06800 41.117 197 79 5 19 179 313 508 8.06e-39 139
MsG0780040701.01.T01 AT1G51440 43.646 181 64 5 36 179 334 513 2.51e-36 132
MsG0780040701.01.T01 AT2G42690 36.496 137 74 2 36 159 266 402 7.63e-22 91.7
MsG0780040701.01.T01 AT1G30370 36.301 146 62 4 42 157 362 506 4.45e-20 87.4
MsG0780040701.01.T01 AT1G06250 30.469 128 78 1 42 158 151 278 2.22e-13 67.4
MsG0780040701.01.T01 AT4G18550 31.298 131 77 3 42 159 294 424 2.32e-13 67.8
MsG0780040701.01.T01 AT4G18550 31.298 131 77 3 42 159 277 407 2.42e-13 67.8
MsG0780040701.01.T01 AT1G06250 30.469 128 78 1 42 158 265 392 2.95e-13 67.4

Find 52 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAGATTGGAGAAACATTT+AGG 0.169595 7:+81361667 MsG0780040701.01.T01:CDS
TTCAAATCTTGCCTCCAATT+TGG 0.241101 7:-81363906 None:intergenic
GGACATTGCTTTGGTGAATA+AGG 0.258869 7:+81363848 MsG0780040701.01.T01:CDS
GTTGGGAACGTGAAATTTAA+AGG 0.276041 7:+81361646 MsG0780040701.01.T01:CDS
GATATGAAGCAACCACTAAA+AGG 0.291341 7:+81363826 MsG0780040701.01.T01:CDS
ATGAAGAGATGAGTCCTATC+TGG 0.311376 7:-81364025 None:intergenic
GGAGATTGGAGAAACATTTA+GGG 0.327887 7:+81361668 MsG0780040701.01.T01:CDS
CGTGAAATTTAAAGGGAGAT+TGG 0.344597 7:+81361654 MsG0780040701.01.T01:CDS
GCAAGATTTGAATAGGAATA+TGG 0.354087 7:+81363917 MsG0780040701.01.T01:CDS
AGCACTCTGTGCCACCAAAT+TGG 0.358258 7:+81363892 MsG0780040701.01.T01:CDS
TCGACGGTATAAAACGGATT+TGG 0.362975 7:+81361041 MsG0780040701.01.T01:CDS
ATTGGAGGCAAGATTTGAAT+AGG 0.374370 7:+81363910 MsG0780040701.01.T01:CDS
ATCAGCATTAGGATTCAAAA+TGG 0.401866 7:-81361857 None:intergenic
GCAGATGCAGCATCAGCATT+AGG 0.409371 7:-81361868 None:intergenic
ATAAGAAACCCTGGTGACTT+TGG 0.419814 7:-81361730 None:intergenic
CACTAAAAGGGACATTGCTT+TGG 0.430429 7:+81363839 MsG0780040701.01.T01:CDS
TGCTGCATCTGCTCATAACT+TGG 0.432225 7:+81361879 MsG0780040701.01.T01:CDS
TTTAGTCAAGCTGGGAAGAC+AGG 0.436349 7:+81361080 MsG0780040701.01.T01:CDS
GGTTCATAATAAGCATGATA+TGG 0.439973 7:+81361705 MsG0780040701.01.T01:CDS
TTGGGAACGTGAAATTTAAA+GGG 0.459427 7:+81361647 MsG0780040701.01.T01:CDS
GAGCCTTATCTCTCCCAGAT+AGG 0.471370 7:+81364011 MsG0780040701.01.T01:CDS
CATATCCACGGTTGCTCCCA+TGG 0.475119 7:-81363809 None:intergenic
CGAAGATGGACGTTGGGTGC+TGG 0.476306 7:+81363947 MsG0780040701.01.T01:CDS
AGTGTTCGATTTAGTCAAGC+TGG 0.493814 7:+81361071 MsG0780040701.01.T01:CDS
CAGCACCCAACGTCCATCTT+CGG 0.497295 7:-81363946 None:intergenic
AAATCTTGCCTCCAATTTGG+TGG 0.500957 7:-81363903 None:intergenic
GATATGGTGCCAAAGTCACC+AGG 0.523665 7:+81361721 MsG0780040701.01.T01:CDS
ATCGGTTTCGAAGGGTTCGA+CGG 0.524148 7:+81361025 MsG0780040701.01.T01:CDS
TAGTGGTTGCTTCATATCCA+CGG 0.527117 7:-81363821 None:intergenic
TGCATCTGCTCATAACTTGG+AGG 0.533002 7:+81361882 MsG0780040701.01.T01:CDS
AATATGGTGAAGACCGAAGA+TGG 0.533831 7:+81363933 MsG0780040701.01.T01:CDS
AAGGGTTCGACGGTATAAAA+CGG 0.543288 7:+81361035 MsG0780040701.01.T01:CDS
GATGAGTATCTGCAAGTTGT+GGG 0.543513 7:-81363977 None:intergenic
ATATGAAGCAACCACTAAAA+GGG 0.548654 7:+81363827 MsG0780040701.01.T01:CDS
TTCAAAATGGAGAAATCTTG+TGG 0.551174 7:-81361844 None:intergenic
TGATGATGAGCAGGTACCAT+GGG 0.560215 7:+81363793 MsG0780040701.01.T01:intron
AGTCCTATCTGGGAGAGATA+AGG 0.560550 7:-81364014 None:intergenic
ACTCTGTGCCACCAAATTGG+AGG 0.560687 7:+81363895 MsG0780040701.01.T01:CDS
ACCCATCGAGTATGTGCAAG+TGG 0.565551 7:-81361906 None:intergenic
GCCCACTTGCACATACTCGA+TGG 0.566632 7:+81361904 MsG0780040701.01.T01:CDS
GAAGACCGAAGATGGACGTT+GGG 0.573919 7:+81363941 MsG0780040701.01.T01:CDS
TGAAGAGATGAGTCCTATCT+GGG 0.580441 7:-81364024 None:intergenic
TGATGAGTATCTGCAAGTTG+TGG 0.587655 7:-81363978 None:intergenic
GTGTTCGATTTAGTCAAGCT+GGG 0.589353 7:+81361072 MsG0780040701.01.T01:CDS
TTAGTCAAGCTGGGAAGACA+GGG 0.592433 7:+81361081 MsG0780040701.01.T01:CDS
CCCACTTGCACATACTCGAT+GGG 0.620876 7:+81361905 MsG0780040701.01.T01:CDS
TTGATGATGAGCAGGTACCA+TGG 0.623853 7:+81363792 MsG0780040701.01.T01:intron
AGGTACCATGGGAGCAACCG+TGG 0.651704 7:+81363804 MsG0780040701.01.T01:intron
GAGATTGGAGAAACATTTAG+GGG 0.658549 7:+81361669 MsG0780040701.01.T01:CDS
CCCATCGAGTATGTGCAAGT+GGG 0.660658 7:-81361905 None:intergenic
TGAAGACCGAAGATGGACGT+TGG 0.699979 7:+81363940 MsG0780040701.01.T01:CDS
ATATGGTGCCAAAGTCACCA+GGG 0.760395 7:+81361722 MsG0780040701.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACAGATTAAATAAAATAT+AGG - Chr7:81362982-81363001 None:intergenic 10.0%
!! AAAATATACCTTATATTCAT+AGG - Chr7:81362655-81362674 None:intergenic 15.0%
!! AAAGCAACAAAAAAAATAAA+AGG + Chr7:81361177-81361196 MsG0780040701.01.T01:intron 15.0%
!! AAATATACCTTATATTCATA+GGG - Chr7:81362654-81362673 None:intergenic 15.0%
!! AGTATATTACAGTAATTAAT+TGG - Chr7:81362240-81362259 None:intergenic 15.0%
!! ATTAGATTCTTATTAGATAT+TGG + Chr7:81363449-81363468 MsG0780040701.01.T01:intron 15.0%
!! ATTGAAAAAAAAAAAAAGGA+AGG + Chr7:81361204-81361223 MsG0780040701.01.T01:intron 15.0%
!! ATTTCAGTTTATTAAATAAC+TGG - Chr7:81363057-81363076 None:intergenic 15.0%
!! CTCATGAAAATTTATTAAAT+AGG - Chr7:81363414-81363433 None:intergenic 15.0%
!! GGTATTAAAAACTATAAAAT+AGG + Chr7:81363470-81363489 MsG0780040701.01.T01:intron 15.0%
!!! AGATTTTTCTAAAAAAAAGA+GGG + Chr7:81361229-81361248 MsG0780040701.01.T01:intron 15.0%
!!! ATTTATTAAATAGGTCTTAT+TGG - Chr7:81363405-81363424 None:intergenic 15.0%
!!! TATTATTTTCGGAAAATATT+TGG - Chr7:81362596-81362615 None:intergenic 15.0%
!!! TTTTTGTGATTTAATATCTA+AGG - Chr7:81362935-81362954 None:intergenic 15.0%
!! ACTCATTTAAATGTTTAAGT+GGG - Chr7:81363514-81363533 None:intergenic 20.0%
!! ATTATGTTATAGAAAGAACA+TGG + Chr7:81363140-81363159 MsG0780040701.01.T01:intron 20.0%
!! GAAATAAAAAATATTAAGGG+AGG + Chr7:81362194-81362213 MsG0780040701.01.T01:intron 20.0%
!!! AGATGCTCATATATTATTTT+CGG - Chr7:81362607-81362626 None:intergenic 20.0%
!!! ATAACGATCGATAAATTTTT+AGG - Chr7:81362799-81362818 None:intergenic 20.0%
!!! GAGATTTTTCTAAAAAAAAG+AGG + Chr7:81361228-81361247 MsG0780040701.01.T01:intron 20.0%
!!! GATTTTTCTAAAAAAAAGAG+GGG + Chr7:81361230-81361249 MsG0780040701.01.T01:intron 20.0%
!!! TACTGTTAACTATTTTTGAA+TGG + Chr7:81363727-81363746 MsG0780040701.01.T01:intron 20.0%
!!! TATTTGAGTTTAAGTTTGTT+CGG + Chr7:81362272-81362291 MsG0780040701.01.T01:intron 20.0%
!!! TTCAAAGTCAATTTTTGTTA+AGG - Chr7:81362303-81362322 None:intergenic 20.0%
! AAACCATATTTCGTATGAAT+TGG - Chr7:81363638-81363657 None:intergenic 25.0%
! AAATTGCCAGAATATACAAT+TGG + Chr7:81361316-81361335 MsG0780040701.01.T01:intron 25.0%
! AAATTTAATTACTGCGTACT+AGG + Chr7:81363073-81363092 MsG0780040701.01.T01:intron 25.0%
! AAGTTAGTATTACGTTTAAC+GGG + Chr7:81361503-81361522 MsG0780040701.01.T01:intron 25.0%
! AATGGAGAAAAAGAAAGAAA+AGG + Chr7:81361149-81361168 MsG0780040701.01.T01:intron 25.0%
! ACTCCAAATCAATTAGAAAT+TGG + Chr7:81362432-81362451 MsG0780040701.01.T01:intron 25.0%
! ATAAAAAATATTAAGGGAGG+AGG + Chr7:81362197-81362216 MsG0780040701.01.T01:intron 25.0%
! ATGGAGAAAAAGAAAGAAAA+GGG + Chr7:81361150-81361169 MsG0780040701.01.T01:intron 25.0%
! ATTTGACAACCTATGAATAT+AGG - Chr7:81362731-81362750 None:intergenic 25.0%
! CAACCAATTTCTAATTGATT+TGG - Chr7:81362438-81362457 None:intergenic 25.0%
! CACTCATTTAAATGTTTAAG+TGG - Chr7:81363515-81363534 None:intergenic 25.0%
! CCACTATATACTATGTATTA+CGG - Chr7:81361385-81361404 None:intergenic 25.0%
! GAAGTTAGTATTACGTTTAA+CGG + Chr7:81361502-81361521 MsG0780040701.01.T01:intron 25.0%
! GAATAAGACATTGTATATAG+TGG + Chr7:81361347-81361366 MsG0780040701.01.T01:intron 25.0%
! GGTATTGTCATAAAAGTAAA+AGG - Chr7:81362709-81362728 None:intergenic 25.0%
! TAATTCAGATGTGTTTATAG+AGG + Chr7:81363243-81363262 MsG0780040701.01.T01:intron 25.0%
! TACGAAATATGGTTTATGAT+TGG + Chr7:81363643-81363662 MsG0780040701.01.T01:intron 25.0%
! TATGAAAAAGTGAAAAGAGA+GGG - Chr7:81363286-81363305 None:intergenic 25.0%
! TCATACATATGCATATCAAT+TGG + Chr7:81362081-81362100 MsG0780040701.01.T01:intron 25.0%
! TGTGATTTAATATCTAAGGA+CGG - Chr7:81362931-81362950 None:intergenic 25.0%
! TTAACAACCCTATGAATATA+AGG + Chr7:81362644-81362663 MsG0780040701.01.T01:intron 25.0%
! TTATGAAAAAGTGAAAAGAG+AGG - Chr7:81363287-81363306 None:intergenic 25.0%
! TTTGACAACCTATGAATATA+GGG - Chr7:81362730-81362749 None:intergenic 25.0%
!! GTTTCAGTATTTTCATTTTC+TGG + Chr7:81361616-81361635 MsG0780040701.01.T01:intron 25.0%
!!! AACGTATATCTTTTTAGTCA+TGG - Chr7:81362116-81362135 None:intergenic 25.0%
AAAAAAAAGAGGGGAAAAGA+GGG + Chr7:81361239-81361258 MsG0780040701.01.T01:intron 30.0%
AAATGAAATTGTACATACCG+CGG + Chr7:81361290-81361309 MsG0780040701.01.T01:intron 30.0%
ACAAAAAAACGCGTAAATTC+CGG - Chr7:81361476-81361495 None:intergenic 30.0%
ACAACACCAATTGTATATTC+TGG - Chr7:81361325-81361344 None:intergenic 30.0%
ATATGAAGCAACCACTAAAA+GGG + Chr7:81363827-81363846 MsG0780040701.01.T01:CDS 30.0%
ATCAGCATTAGGATTCAAAA+TGG - Chr7:81361860-81361879 None:intergenic 30.0%
CAACCAATTCATACGAAATA+TGG + Chr7:81363632-81363651 MsG0780040701.01.T01:intron 30.0%
CATATTTCGTATGAATTGGT+TGG - Chr7:81363634-81363653 None:intergenic 30.0%
CCGTAATACATAGTATATAG+TGG + Chr7:81361382-81361401 MsG0780040701.01.T01:intron 30.0%
GCAAGATTTGAATAGGAATA+TGG + Chr7:81363917-81363936 MsG0780040701.01.T01:CDS 30.0%
GGTTCATAATAAGCATGATA+TGG + Chr7:81361705-81361724 MsG0780040701.01.T01:CDS 30.0%
TAAAAAAAAGAGGGGAAAAG+AGG + Chr7:81361238-81361257 MsG0780040701.01.T01:intron 30.0%
TAAGACATTGTATATAGTGG+CGG + Chr7:81361350-81361369 MsG0780040701.01.T01:intron 30.0%
TGACAATACCCTATATTCAT+AGG + Chr7:81362719-81362738 MsG0780040701.01.T01:intron 30.0%
TTCAAAATGGAGAAATCTTG+TGG - Chr7:81361847-81361866 None:intergenic 30.0%
TTCTCATTAATAAGAAACCC+TGG - Chr7:81361742-81361761 None:intergenic 30.0%
TTGGGAACGTGAAATTTAAA+GGG + Chr7:81361647-81361666 MsG0780040701.01.T01:CDS 30.0%
! ATTTAGGGGTTAAGATTTTG+AGG + Chr7:81361683-81361702 MsG0780040701.01.T01:CDS 30.0%
! ATTTTCATTTTCTGGACCTA+GGG + Chr7:81361624-81361643 MsG0780040701.01.T01:intron 30.0%
! TATGGTTTATGATTGGTTGA+CGG + Chr7:81363650-81363669 MsG0780040701.01.T01:intron 30.0%
! TATTTTCATTTTCTGGACCT+AGG + Chr7:81361623-81361642 MsG0780040701.01.T01:intron 30.0%
! TTAAAGTGTCTAATTGGTCA+TGG - Chr7:81362849-81362868 None:intergenic 30.0%
! TTTAGGGGTTAAGATTTTGA+GGG + Chr7:81361684-81361703 MsG0780040701.01.T01:CDS 30.0%
!! ATTCTCTAGAGTGGATAATT+CGG + Chr7:81363202-81363221 MsG0780040701.01.T01:intron 30.0%
!! CATATGCCTATCTTTTTCAT+TGG + Chr7:81363574-81363593 MsG0780040701.01.T01:intron 30.0%
!! CCTATCTTTTTCATTGGTAT+GGG + Chr7:81363580-81363599 MsG0780040701.01.T01:intron 30.0%
!! TTTCTAATTGATTTGGAGTG+AGG - Chr7:81362431-81362450 None:intergenic 30.0%
AAATAGACCGTTAATAGTGG+CGG + Chr7:81361423-81361442 MsG0780040701.01.T01:intron 35.0%
AATGAAATTGTACATACCGC+GGG + Chr7:81361291-81361310 MsG0780040701.01.T01:intron 35.0%
ACGGTTAATGTTAGGGAAAA+TGG + Chr7:81361580-81361599 MsG0780040701.01.T01:intron 35.0%
AGCAAACTTTATAACCACTC+AGG - Chr7:81361769-81361788 None:intergenic 35.0%
ATAGAGGATGACACCTTTAA+AGG + Chr7:81363259-81363278 MsG0780040701.01.T01:intron 35.0%
ATTGGAGGCAAGATTTGAAT+AGG + Chr7:81363910-81363929 MsG0780040701.01.T01:CDS 35.0%
CAGAAACACGGTTAATGTTA+GGG + Chr7:81361573-81361592 MsG0780040701.01.T01:intron 35.0%
CCACTATTAACGGTCTATTT+CGG - Chr7:81361423-81361442 None:intergenic 35.0%
CCCATACCAATGAAAAAGAT+AGG - Chr7:81363583-81363602 None:intergenic 35.0%
CGTGAAATTTAAAGGGAGAT+TGG + Chr7:81361654-81361673 MsG0780040701.01.T01:CDS 35.0%
CGTTTGATATAGCAGAAACA+CGG + Chr7:81361561-81361580 MsG0780040701.01.T01:intron 35.0%
CTGAGGATATTGATATTCCA+TGG + Chr7:81361787-81361806 MsG0780040701.01.T01:intron 35.0%
GAGATTGGAGAAACATTTAG+GGG + Chr7:81361669-81361688 MsG0780040701.01.T01:CDS 35.0%
GATATGAAGCAACCACTAAA+AGG + Chr7:81363826-81363845 MsG0780040701.01.T01:CDS 35.0%
GGAGATTGGAGAAACATTTA+GGG + Chr7:81361668-81361687 MsG0780040701.01.T01:CDS 35.0%
GTTGGGAACGTGAAATTTAA+AGG + Chr7:81361646-81361665 MsG0780040701.01.T01:CDS 35.0%
GTTTAACGGGACATAGTTTA+GGG + Chr7:81361516-81361535 MsG0780040701.01.T01:intron 35.0%
TTCAAATCTTGCCTCCAATT+TGG - Chr7:81363909-81363928 None:intergenic 35.0%
! AATAGACACATTCTCTAGAG+TGG + Chr7:81363193-81363212 MsG0780040701.01.T01:intron 35.0%
! TGCGTGTTAAAGTGTCTAAT+TGG - Chr7:81362855-81362874 None:intergenic 35.0%
!! AGTGGTTATAAAGTTTGCTG+AGG + Chr7:81361770-81361789 MsG0780040701.01.T01:intron 35.0%
!! ATCTTTTTCATTGGTATGGG+CGG + Chr7:81363583-81363602 MsG0780040701.01.T01:intron 35.0%
!! GCCTATCTTTTTCATTGGTA+TGG + Chr7:81363579-81363598 MsG0780040701.01.T01:intron 35.0%
!! GTATAACTTTGATGATGAGC+AGG + Chr7:81363784-81363803 MsG0780040701.01.T01:intron 35.0%
!! TTTGGAGAAGAAGGTTTTGA+CGG + Chr7:81361110-81361129 MsG0780040701.01.T01:CDS 35.0%
!!! AATTTTCATGAGTGTCGAGT+TGG + Chr7:81363422-81363441 MsG0780040701.01.T01:intron 35.0%
AAAAAACGCGTAAATTCCGG+CGG - Chr7:81361473-81361492 None:intergenic 40.0%
AAATCTTGCCTCCAATTTGG+TGG - Chr7:81363906-81363925 None:intergenic 40.0%
AACACGCAACAATGATCTTC+AGG + Chr7:81362867-81362886 MsG0780040701.01.T01:intron 40.0%
AAGGGTTCGACGGTATAAAA+CGG + Chr7:81361035-81361054 MsG0780040701.01.T01:CDS 40.0%
AATATGGTGAAGACCGAAGA+TGG + Chr7:81363933-81363952 MsG0780040701.01.T01:CDS 40.0%
AGATGCACATGCAAAATACG+TGG - Chr7:81361963-81361982 None:intergenic 40.0%
AGTGTTCGATTTAGTCAAGC+TGG + Chr7:81361071-81361090 MsG0780040701.01.T01:CDS 40.0%
ATAAGAAACCCTGGTGACTT+TGG - Chr7:81361733-81361752 None:intergenic 40.0%
ATGAAGAGATGAGTCCTATC+TGG - Chr7:81364028-81364047 None:intergenic 40.0%
ATGTTGGAGTTGAGTAGAGT+TGG + Chr7:81361820-81361839 MsG0780040701.01.T01:intron 40.0%
ATTAAGGGAGGAGGTAACAT+TGG + Chr7:81362206-81362225 MsG0780040701.01.T01:intron 40.0%
CACTAAAAGGGACATTGCTT+TGG + Chr7:81363839-81363858 MsG0780040701.01.T01:CDS 40.0%
CCGAAATAGACCGTTAATAG+TGG + Chr7:81361420-81361439 MsG0780040701.01.T01:intron 40.0%
CGTTTAACGGGACATAGTTT+AGG + Chr7:81361515-81361534 MsG0780040701.01.T01:intron 40.0%
GAAAAGAGAGGGTCCTTTAA+AGG - Chr7:81363275-81363294 None:intergenic 40.0%
GATGAGTATCTGCAAGTTGT+GGG - Chr7:81363980-81363999 None:intergenic 40.0%
GCAGAAACACGGTTAATGTT+AGG + Chr7:81361572-81361591 MsG0780040701.01.T01:intron 40.0%
GGACATTGCTTTGGTGAATA+AGG + Chr7:81363848-81363867 MsG0780040701.01.T01:CDS 40.0%
GGATAATTCGGATGTCTTTG+TGG + Chr7:81363214-81363233 MsG0780040701.01.T01:intron 40.0%
GGGAGATTGGAGAAACATTT+AGG + Chr7:81361667-81361686 MsG0780040701.01.T01:CDS 40.0%
GTGTTCGATTTAGTCAAGCT+GGG + Chr7:81361072-81361091 MsG0780040701.01.T01:CDS 40.0%
TAGGAAACCGCCACTATTAA+CGG - Chr7:81361433-81361452 None:intergenic 40.0%
TAGTGGTTGCTTCATATCCA+CGG - Chr7:81363824-81363843 None:intergenic 40.0%
TGAAGAGATGAGTCCTATCT+GGG - Chr7:81364027-81364046 None:intergenic 40.0%
TGATCTTCAGGACTAGAAAG+AGG + Chr7:81362879-81362898 MsG0780040701.01.T01:intron 40.0%
TGATGAGTATCTGCAAGTTG+TGG - Chr7:81363981-81364000 None:intergenic 40.0%
TTAAATGAGTGCGCTCTATG+CGG + Chr7:81363524-81363543 MsG0780040701.01.T01:intron 40.0%
TTAATGAGAAATCGCCTGAG+TGG + Chr7:81361752-81361771 MsG0780040701.01.T01:intron 40.0%
! CAAAGCAATGTCCCTTTTAG+TGG - Chr7:81363841-81363860 None:intergenic 40.0%
! GGAGTGAGGATTTGCATTTT+TGG - Chr7:81362417-81362436 None:intergenic 40.0%
! TCGACGGTATAAAACGGATT+TGG + Chr7:81361041-81361060 MsG0780040701.01.T01:CDS 40.0%
!! AAGAAGGTTTTGACGGTTTC+TGG + Chr7:81361117-81361136 MsG0780040701.01.T01:CDS 40.0%
!! ACATAGTTTAGGGAGTGCTA+TGG + Chr7:81361526-81361545 MsG0780040701.01.T01:intron 40.0%
!! AGAAGGTTTTGACGGTTTCT+GGG + Chr7:81361118-81361137 MsG0780040701.01.T01:CDS 40.0%
!!! GGGTTTTGATTTGGAGAAGA+AGG + Chr7:81361101-81361120 MsG0780040701.01.T01:CDS 40.0%
AATTTCACGTTCCCAACCCT+AGG - Chr7:81361643-81361662 None:intergenic 45.0%
ACCTATGATAGGTCCGTAAG+GGG - Chr7:81362906-81362925 None:intergenic 45.0%
ACTAGAAAGAGGTCCCCTTA+CGG + Chr7:81362890-81362909 MsG0780040701.01.T01:intron 45.0%
AGTCCTATCTGGGAGAGATA+AGG - Chr7:81364017-81364036 None:intergenic 45.0%
ATCGTTATCTATCGTGTCCG+GGG + Chr7:81362811-81362830 MsG0780040701.01.T01:intron 45.0%
ATTCGGATGTCTTTGTGGAG+TGG + Chr7:81363219-81363238 MsG0780040701.01.T01:intron 45.0%
CCAACATGAGTGTAACACCA+TGG - Chr7:81361807-81361826 None:intergenic 45.0%
CGATCGTTATCTATCGTGTC+CGG + Chr7:81362809-81362828 MsG0780040701.01.T01:intron 45.0%
GACCTATGATAGGTCCGTAA+GGG - Chr7:81362907-81362926 None:intergenic 45.0%
GATCGTTATCTATCGTGTCC+GGG + Chr7:81362810-81362829 MsG0780040701.01.T01:intron 45.0%
GCACATGCAAAATACGTGGT+TGG - Chr7:81361959-81361978 None:intergenic 45.0%
TAAGGACGGTGACCTATGAT+AGG - Chr7:81362917-81362936 None:intergenic 45.0%
TATTCTGGCAATTTGACCCG+CGG - Chr7:81361310-81361329 None:intergenic 45.0%
TGACCTATGATAGGTCCGTA+AGG - Chr7:81362908-81362927 None:intergenic 45.0%
TGCATCTGCTCATAACTTGG+AGG + Chr7:81361882-81361901 MsG0780040701.01.T01:CDS 45.0%
TGCTGCATCTGCTCATAACT+TGG + Chr7:81361879-81361898 MsG0780040701.01.T01:CDS 45.0%
TTAGTCAAGCTGGGAAGACA+GGG + Chr7:81361081-81361100 MsG0780040701.01.T01:CDS 45.0%
TTTAGTCAAGCTGGGAAGAC+AGG + Chr7:81361080-81361099 MsG0780040701.01.T01:CDS 45.0%
! ATATGGTGCCAAAGTCACCA+GGG + Chr7:81361722-81361741 MsG0780040701.01.T01:CDS 45.0%
! CATTTTCTGGACCTAGGGTT+GGG + Chr7:81361629-81361648 MsG0780040701.01.T01:intron 45.0%
! GGTTTCTGGGTACATGTGAA+TGG + Chr7:81361131-81361150 MsG0780040701.01.T01:intron 45.0%
! TCATTTTCTGGACCTAGGGT+TGG + Chr7:81361628-81361647 MsG0780040701.01.T01:intron 45.0%
! TGATGATGAGCAGGTACCAT+GGG + Chr7:81363793-81363812 MsG0780040701.01.T01:intron 45.0%
!! CCATGGTGTTACACTCATGT+TGG + Chr7:81361804-81361823 MsG0780040701.01.T01:intron 45.0%
!! TTGATGATGAGCAGGTACCA+TGG + Chr7:81363792-81363811 MsG0780040701.01.T01:intron 45.0%
!!! AAATTCCGGCGGTTTTGTTG+CGG - Chr7:81361462-81361481 None:intergenic 45.0%
!!! GGGAAGACAGGGTTTTGATT+TGG + Chr7:81361092-81361111 MsG0780040701.01.T01:CDS 45.0%
!! AATTATTGAAAAAAAAAAAA+AGG + Chr7:81361200-81361219 MsG0780040701.01.T01:intron 5.0%
!! TTTAATTAATTTATTAAGTT+GGG - Chr7:81363311-81363330 None:intergenic 5.0%
!!! ATTTGAAATAAAAAATATTA+AGG + Chr7:81362190-81362209 MsG0780040701.01.T01:intron 5.0%
!!! TTTGAAATAAAAAATATTAA+GGG + Chr7:81362191-81362210 MsG0780040701.01.T01:intron 5.0%
!!! TTTTAATTAATTTATTAAGT+TGG - Chr7:81363312-81363331 None:intergenic 5.0%
ACCCATCGAGTATGTGCAAG+TGG - Chr7:81361909-81361928 None:intergenic 50.0%
ACTCTGTGCCACCAAATTGG+AGG + Chr7:81363895-81363914 MsG0780040701.01.T01:CDS 50.0%
AGCACTCTGTGCCACCAAAT+TGG + Chr7:81363892-81363911 MsG0780040701.01.T01:CDS 50.0%
CCCACTTGCACATACTCGAT+GGG + Chr7:81361905-81361924 MsG0780040701.01.T01:CDS 50.0%
CCCATCGAGTATGTGCAAGT+GGG - Chr7:81361908-81361927 None:intergenic 50.0%
GAAGACCGAAGATGGACGTT+GGG + Chr7:81363941-81363960 MsG0780040701.01.T01:CDS 50.0%
GCAGATGCAGCATCAGCATT+AGG - Chr7:81361871-81361890 None:intergenic 50.0%
TCCCCTTACGGACCTATCAT+AGG + Chr7:81362902-81362921 MsG0780040701.01.T01:intron 50.0%
TCGTTATCTATCGTGTCCGG+GGG + Chr7:81362812-81362831 MsG0780040701.01.T01:intron 50.0%
TGAAGACCGAAGATGGACGT+TGG + Chr7:81363940-81363959 MsG0780040701.01.T01:CDS 50.0%
! ATCGGTTTCGAAGGGTTCGA+CGG + Chr7:81361025-81361044 MsG0780040701.01.T01:CDS 50.0%
! GAGCCTTATCTCTCCCAGAT+AGG + Chr7:81364011-81364030 MsG0780040701.01.T01:CDS 50.0%
! GATATGGTGCCAAAGTCACC+AGG + Chr7:81361721-81361740 MsG0780040701.01.T01:CDS 50.0%
CAGCACCCAACGTCCATCTT+CGG - Chr7:81363949-81363968 None:intergenic 55.0%
CATATCCACGGTTGCTCCCA+TGG - Chr7:81363812-81363831 None:intergenic 55.0%
GCCCACTTGCACATACTCGA+TGG + Chr7:81361904-81361923 MsG0780040701.01.T01:CDS 55.0%
TATCGTGTCCGGGGGTTTGA+GGG + Chr7:81362820-81362839 MsG0780040701.01.T01:intron 55.0%
!!! GGTTTTGTTGCGGCGGTTGT+AGG - Chr7:81361452-81361471 None:intergenic 55.0%
AACCGCCGCAACAAAACCGC+CGG + Chr7:81361454-81361473 MsG0780040701.01.T01:intron 60.0%
AGGTACCATGGGAGCAACCG+TGG + Chr7:81363804-81363823 MsG0780040701.01.T01:intron 60.0%
ATCGTGTCCGGGGGTTTGAG+GGG + Chr7:81362821-81362840 MsG0780040701.01.T01:intron 60.0%
CGAAGATGGACGTTGGGTGC+TGG + Chr7:81363947-81363966 MsG0780040701.01.T01:CDS 60.0%
CTATCGTGTCCGGGGGTTTG+AGG + Chr7:81362819-81362838 MsG0780040701.01.T01:intron 60.0%
!!! TTCCGGCGGTTTTGTTGCGG+CGG - Chr7:81361459-81361478 None:intergenic 60.0%
CATGGTCCCCCTCAAACCCC+CGG - Chr7:81362831-81362850 None:intergenic 65.0%
TCGTGTCCGGGGGTTTGAGG+GGG + Chr7:81362822-81362841 MsG0780040701.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 81361018 81364058 81361018 ID=MsG0780040701.01;Name=MsG0780040701.01
Chr7 mRNA 81361018 81364058 81361018 ID=MsG0780040701.01.T01;Parent=MsG0780040701.01;Name=MsG0780040701.01.T01;_AED=0.50;_eAED=0.61;_QI=0|0|0|1|1|1|4|0|187
Chr7 exon 81361018 81361139 81361018 ID=MsG0780040701.01.T01:exon:18864;Parent=MsG0780040701.01.T01
Chr7 exon 81361645 81361743 81361645 ID=MsG0780040701.01.T01:exon:18865;Parent=MsG0780040701.01.T01
Chr7 exon 81361837 81361926 81361837 ID=MsG0780040701.01.T01:exon:18866;Parent=MsG0780040701.01.T01
Chr7 exon 81363806 81364058 81363806 ID=MsG0780040701.01.T01:exon:18867;Parent=MsG0780040701.01.T01
Chr7 CDS 81361018 81361139 81361018 ID=MsG0780040701.01.T01:cds;Parent=MsG0780040701.01.T01
Chr7 CDS 81361645 81361743 81361645 ID=MsG0780040701.01.T01:cds;Parent=MsG0780040701.01.T01
Chr7 CDS 81361837 81361926 81361837 ID=MsG0780040701.01.T01:cds;Parent=MsG0780040701.01.T01
Chr7 CDS 81363806 81364058 81363806 ID=MsG0780040701.01.T01:cds;Parent=MsG0780040701.01.T01
Gene Sequence

>MsG0780040701.01.T01

ATGTTTTATCGGTTTCGAAGGGTTCGACGGTATAAAACGGATTTGGAGAAAGAAGTGTTCGATTTAGTCAAGCTGGGAAGACAGGGTTTTGATTTGGAGAAGAAGGTTTTGACGGTTTCTGGGGTTGGGAACGTGAAATTTAAAGGGAGATTGGAGAAACATTTAGGGGTTAAGATTTTGAGGGTTCATAATAAGCATGATATGGTGCCAAAGTCACCAGGAGTTGGACCACAAGATTTCTCCATTTTGAATCCTAATGCTGATGCTGCATCTGCTCATAACTTGGAGGCCCACTTGCACATACTCGATGGGTACCATGGGAGCAACCGTGGATATGAAGCAACCACTAAAAGGGACATTGCTTTGGTGAATAAGGCTTGTGACTTTGTGAAAGATGAGCACTCTGTGCCACCAAATTGGAGGCAAGATTTGAATAGGAATATGGTGAAGACCGAAGATGGACGTTGGGTGCTGGCTCAACGCCCACAACTTGCAGATACTCATCATGAAGACATTGAGCCTTATCTCTCCCAGATAGGACTCATCTCTTCATCTAATAAATAA

Protein sequence

>MsG0780040701.01.T01

MFYRFRRVRRYKTDLEKEVFDLVKLGRQGFDLEKKVLTVSGVGNVKFKGRLEKHLGVKILRVHNKHDMVPKSPGVGPQDFSILNPNADAASAHNLEAHLHILDGYHGSNRGYEATTKRDIALVNKACDFVKDEHSVPPNWRQDLNRNMVKTEDGRWVLAQRPQLADTHHEDIEPYLSQIGLISSSNK*