AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046051.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046051.01.T02 MTR_4g098620 99.127 229 2 0 1 229 1 229 1.58e-171 471
MsG0880046051.01.T01 MTR_4g098620 99.127 229 2 0 1 229 1 229 1.58e-171 471
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046051.01.T02 AT1G32520 73.640 239 53 7 1 229 1 239 6.73e-121 343
MsG0880046051.01.T01 AT1G32520 73.640 239 53 7 1 229 1 239 6.73e-121 343

Find 74 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCGTGGTGGGCCGCAATT+TGG 0.091289 8:+68280166 MsG0880046051.01.T01:CDS
CTAGTATAAGCTTGCAATTT+TGG 0.186690 8:-68280392 None:intergenic
CTTATACTAGAACTTCATTA+TGG 0.202644 8:+68280405 MsG0880046051.01.T01:exon
CTCGTGGTGGGCCGCAATTT+GGG 0.206328 8:+68280167 MsG0880046051.01.T01:CDS
CCAACCTTAGGCAAAATTAT+TGG 0.222718 8:-68280115 None:intergenic
GCTGGGCCTGATACTAATTC+TGG 0.242393 8:+68280241 MsG0880046051.01.T01:CDS
CTCCTTGCCATCTTCCCTTT+TGG 0.242724 8:-68280311 None:intergenic
AAAATCCCCAGCTTGAAATA+TGG 0.244051 8:+68280837 MsG0880046051.01.T01:intron
AAAGGGCCATGTGTAATAAT+AGG 0.265542 8:+68279974 MsG0880046051.01.T01:CDS
CCAGCAAAACCACCCATAAC+TGG 0.267578 8:-68280223 None:intergenic
TCTGTGCTTCTATATCCTTC+AGG 0.271435 8:-68280034 None:intergenic
CACCCATAACTGGGGCTAAT+GGG 0.279555 8:-68280213 None:intergenic
AATGGTCTATAATTCGGATT+TGG 0.308738 8:+68280745 MsG0880046051.01.T01:intron
GGGCTGATGGGCTTCTCATC+GGG 0.321712 8:+68280188 MsG0880046051.01.T01:CDS
CCACCCATAACTGGGGCTAA+TGG 0.338213 8:-68280214 None:intergenic
ACAGACAACTCTTTCAAGTT+TGG 0.342835 8:+68280001 MsG0880046051.01.T01:CDS
TTGTCACCGATTTAGACTTT+TGG 0.347040 8:+68280492 MsG0880046051.01.T01:intron
GGGCCGCAATTTGGGGCTGA+TGG 0.348553 8:+68280175 MsG0880046051.01.T01:CDS
GGGGCTGATGGGCTTCTCAT+CGG 0.364017 8:+68280187 MsG0880046051.01.T01:CDS
AAATTCAAATTCATCAGTAT+TGG 0.380585 8:-68280443 None:intergenic
AGTGATGACTGAGAAATGTT+AGG 0.381198 8:-68280947 None:intergenic
TTATACTAGAACTTCATTAT+GGG 0.401059 8:+68280406 MsG0880046051.01.T01:exon
GTGTCTAATGGTCTATAATT+CGG 0.401659 8:+68280739 MsG0880046051.01.T01:intron
CTGTGCTTCTATATCCTTCA+GGG 0.408081 8:-68280033 None:intergenic
AAATCCCCAGCTTGAAATAT+GGG 0.413177 8:+68280838 MsG0880046051.01.T01:intron
ATAAGTAGTTGTATCCTTCA+AGG 0.417109 8:+68280705 MsG0880046051.01.T01:intron
GAGACAAGCCAAGTCTAGAT+TGG 0.419344 8:+68280276 MsG0880046051.01.T01:CDS
TTGCCTAAGGTTGGTGGCAG+TGG 0.427431 8:+68280124 MsG0880046051.01.T01:CDS
CTAACTAAGTCATCCATTTG+TGG 0.431167 8:-68280883 None:intergenic
CTTGATCCAAAAGTCTAAAT+CGG 0.434028 8:-68280498 None:intergenic
ACAAATCACATACTATTTCA+TGG 0.441288 8:-68280671 None:intergenic
TGCTACAGGGCAACAATTGA+TGG 0.444287 8:+68279914 MsG0880046051.01.T01:CDS
ATTAAAGTTCAAACGTGAGC+AGG 0.449464 8:+68280553 MsG0880046051.01.T01:intron
GTATGTAAATGCGTGTCTAA+TGG 0.450011 8:+68280727 MsG0880046051.01.T01:intron
GGCCGCAATTTGGGGCTGAT+GGG 0.455119 8:+68280176 MsG0880046051.01.T01:CDS
CACGCATTTACATACCTTGA+AGG 0.458519 8:-68280719 None:intergenic
AGACAAGCCAAGTCTAGATT+GGG 0.460900 8:+68280277 MsG0880046051.01.T01:CDS
AGGAACTGAAATGCTGCTAC+AGG 0.463256 8:+68279900 MsG0880046051.01.T01:CDS
TGGGATTGTCTTATGCCAAA+AGG 0.463760 8:+68280296 MsG0880046051.01.T01:CDS
GCACCACTGCCACCAACCTT+AGG 0.472228 8:-68280127 None:intergenic
CAGCAAAACCACCCATAACT+GGG 0.479885 8:-68280222 None:intergenic
CCAACACCAGAATTAGTATC+AGG 0.485918 8:-68280247 None:intergenic
AGTCATCCATTTGTGGCAGT+TGG 0.486935 8:-68280876 None:intergenic
CTTGATCCAACTGCCACAAA+TGG 0.494660 8:+68280870 MsG0880046051.01.T01:intron
GGGATTGTCTTATGCCAAAA+GGG 0.500151 8:+68280297 MsG0880046051.01.T01:CDS
ACCCATAACTGGGGCTAATG+GGG 0.505857 8:-68280212 None:intergenic
GAGGACCCATATTTCAAGCT+GGG 0.515691 8:-68280843 None:intergenic
AGAGGACCCATATTTCAAGC+TGG 0.523048 8:-68280844 None:intergenic
TAGAACTTCATTATGGGGTA+AGG 0.524780 8:+68280412 MsG0880046051.01.T01:intron
CTTTAAAATCACAACATTGG+TGG 0.526175 8:-68279955 None:intergenic
TTTGATCCATGGGAGTTGCC+TGG 0.534126 8:-68283016 MsG0880046050.01.T01:intron
TCGTGGTGGGCCGCAATTTG+GGG 0.534768 8:+68280168 MsG0880046051.01.T01:CDS
TCTTATGCCAAAAGGGAAGA+TGG 0.539221 8:+68280304 MsG0880046051.01.T01:CDS
ATGTGATTGTACACATCGTA+AGG 0.542479 8:+68280586 MsG0880046051.01.T01:intron
TTTGGTGCATTTAACCCTGA+AGG 0.542646 8:+68280019 MsG0880046051.01.T01:CDS
CTGTTTGATTATGCTCGTGG+TGG 0.546126 8:+68280154 MsG0880046051.01.T01:CDS
CCTGATACTAATTCTGGTGT+TGG 0.548121 8:+68280247 MsG0880046051.01.T01:CDS
GCCCTTTAAAATCACAACAT+TGG 0.553032 8:-68279958 None:intergenic
TGCCAAAAGGGAAGATGGCA+AGG 0.559565 8:+68280309 MsG0880046051.01.T01:CDS
CCATTAGCCCCAGTTATGGG+TGG 0.560552 8:+68280214 MsG0880046051.01.T01:CDS
AGCCCATCAGCCCCAAATTG+CGG 0.561376 8:-68280178 None:intergenic
ATGTGAAATTGAAGATTACC+AGG 0.567052 8:+68282998 MsG0880046051.01.T01:three_prime_UTR
TGTTTGATTATGCTCGTGGT+GGG 0.570159 8:+68280155 MsG0880046051.01.T01:CDS
TATACTAGAACTTCATTATG+GGG 0.572286 8:+68280407 MsG0880046051.01.T01:exon
AGACAATCCCAATCTAGACT+TGG 0.587589 8:-68280284 None:intergenic
CCCATAACTGGGGCTAATGG+GGG 0.595547 8:-68280211 None:intergenic
TGACTTAGTTAGTGAATGCA+TGG 0.597420 8:+68280894 MsG0880046051.01.T01:intron
AGATTACCAGGCAACTCCCA+TGG 0.598328 8:+68283010 MsG0880046051.01.T01:three_prime_UTR
AGGACCCATATTTCAAGCTG+GGG 0.614761 8:-68280842 None:intergenic
GCTCTGTTTGATTATGCTCG+TGG 0.617447 8:+68280151 MsG0880046051.01.T01:CDS
GGAACTGAAATGCTGCTACA+GGG 0.624888 8:+68279901 MsG0880046051.01.T01:CDS
GTGTAACCTATTATTACACA+TGG 0.631481 8:-68279980 None:intergenic
GGCAGTTGGATCAAGATCAG+AGG 0.658786 8:-68280862 None:intergenic
AGCAAAACCACCCATAACTG+GGG 0.696608 8:-68280221 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTATTGATAAATAATTAT+GGG - Chr8:68281540-68281559 None:intergenic 10.0%
!! ATTATACACAATAAAAAAAT+CGG - Chr8:68279620-68279639 None:intergenic 10.0%
!! AATAGTATATTTCAAATGTA+AGG - Chr8:68282938-68282957 MsG0880046050.01.T01:intron 15.0%
!! AATTATAATATGAACAAATG+AGG - Chr8:68281993-68282012 MsG0880046050.01.T01:intron 15.0%
!! ATTATATGTACCTTAAAATA+TGG + Chr8:68282511-68282530 MsG0880046051.01.T01:intron 15.0%
!! GAGTTATTGATAAATAATTA+TGG - Chr8:68281541-68281560 None:intergenic 15.0%
!! GTTATTGATAAATAATTATG+GGG - Chr8:68281539-68281558 None:intergenic 15.0%
!!! TTTAAATTTGAAAAAGTATC+TGG + Chr8:68279708-68279727 MsG0880046051.01.T01:intron 15.0%
!! AAATTCAAATTCATCAGTAT+TGG - Chr8:68280446-68280465 None:intergenic 20.0%
!! AATTCCAAAACTAATTTAGT+CGG - Chr8:68279662-68279681 None:intergenic 20.0%
!! AATTTGTAAAAATCAATCAC+TGG + Chr8:68283037-68283056 MsG0880046051.01.T01:three_prime_UTR 20.0%
!! ATATCATGATATTTAATCTG+AGG - Chr8:68279453-68279472 None:intergenic 20.0%
!! ATTCTAAGTCATACATTAAA+AGG + Chr8:68281389-68281408 MsG0880046051.01.T01:intron 20.0%
!! ATTTGATTATAAACCTCATA+AGG + Chr8:68281684-68281703 MsG0880046051.01.T01:intron 20.0%
!! CAATAAAAAAATCGGATAAA+CGG - Chr8:68279612-68279631 None:intergenic 20.0%
!! TATTTAATGTTATCATCCTT+AGG + Chr8:68279834-68279853 MsG0880046051.01.T01:intron 20.0%
!! TGAATATGTTACTACTATTT+AGG + Chr8:68279583-68279602 MsG0880046051.01.T01:intron 20.0%
!! TTATACTAGAACTTCATTAT+GGG + Chr8:68280406-68280425 MsG0880046051.01.T01:exon 20.0%
!!! ATTTTTACAAATTTGATCCA+TGG - Chr8:68283030-68283049 MsG0880046050.01.T01:CDS 20.0%
!!! GTTAACAAAACATTTTTGAA+AGG + Chr8:68279498-68279517 MsG0880046051.01.T01:CDS 20.0%
!!! GTTATATCAGTTTATCATTT+TGG - Chr8:68279811-68279830 None:intergenic 20.0%
!!! TCTAAAATCTGAAAACAAAA+GGG - Chr8:68281638-68281657 None:intergenic 20.0%
!!! TGAATAGTGTTAATTAGTTT+TGG + Chr8:68279315-68279334 MsG0880046051.01.T01:five_prime_UTR 20.0%
!!! TGATGCATTTCTATTTTATT+GGG + Chr8:68280075-68280094 MsG0880046051.01.T01:CDS 20.0%
!!! TTCTAAAATCTGAAAACAAA+AGG - Chr8:68281639-68281658 None:intergenic 20.0%
!!! TTGATGCATTTCTATTTTAT+TGG + Chr8:68280074-68280093 MsG0880046051.01.T01:CDS 20.0%
!!! TTTGTTTTCAGATTTTAGAA+AGG + Chr8:68281639-68281658 MsG0880046051.01.T01:intron 20.0%
!!! TTTTTACAAATTTGATCCAT+GGG - Chr8:68283029-68283048 MsG0880046050.01.T01:CDS 20.0%
!!! TTTTTTTACTATGCCAAATT+AGG - Chr8:68281600-68281619 None:intergenic 20.0%
! AAATCTACACCATAATTAAG+AGG - Chr8:68279685-68279704 None:intergenic 25.0%
! AAATTTGAGTAGGATAAAGT+AGG + Chr8:68281813-68281832 MsG0880046051.01.T01:intron 25.0%
! AAGAATCAAGAATCATATCA+GGG + Chr8:68282040-68282059 MsG0880046051.01.T01:intron 25.0%
! ACAAATCACATACTATTTCA+TGG - Chr8:68280674-68280693 None:intergenic 25.0%
! ACAAGTCCATATTGTTTATT+TGG + Chr8:68279393-68279412 MsG0880046051.01.T01:CDS 25.0%
! CTTATACTAGAACTTCATTA+TGG + Chr8:68280405-68280424 MsG0880046051.01.T01:exon 25.0%
! GAGATTGAATGACTATAATT+TGG - Chr8:68281964-68281983 MsG0880046050.01.T01:intron 25.0%
! TAAAAGATTCTATTTCACAC+AGG + Chr8:68282878-68282897 MsG0880046051.01.T01:intron 25.0%
! TAGTAAAAAAAGAGTGAGAA+TGG + Chr8:68281609-68281628 MsG0880046051.01.T01:intron 25.0%
! TATACTAGAACTTCATTATG+GGG + Chr8:68280407-68280426 MsG0880046051.01.T01:exon 25.0%
! TATGATTCTTGATTCTTCAA+AGG - Chr8:68282037-68282056 MsG0880046050.01.T01:CDS 25.0%
! TATTTGTTCTTGATCCATTT+GGG + Chr8:68282722-68282741 MsG0880046051.01.T01:intron 25.0%
! TCAGATAATGTAAGTCAAAA+TGG - Chr8:68281774-68281793 MsG0880046050.01.T01:CDS 25.0%
! TTCAAATGTAAGGTTTGATA+TGG - Chr8:68282928-68282947 MsG0880046050.01.T01:intron 25.0%
! TTCAGCATTAAAATTTGAGT+AGG + Chr8:68281803-68281822 MsG0880046051.01.T01:intron 25.0%
! TTCCAACCAAATAAACAATA+TGG - Chr8:68279402-68279421 None:intergenic 25.0%
! TTTCTGCATTGTTTATGATA+AGG - Chr8:68282850-68282869 MsG0880046050.01.T01:intron 25.0%
!! ACCAATGTTGTGATTTTAAA+GGG + Chr8:68279957-68279976 MsG0880046051.01.T01:CDS 25.0%
!! GTGATAATTTAAGTTTGCAA+AGG - Chr8:68281007-68281026 None:intergenic 25.0%
!! TAGTATAAGCTTGCAATTTT+GGG - Chr8:68280394-68280413 None:intergenic 25.0%
!! TTTGGAATTCCTCTTAATTA+TGG + Chr8:68279673-68279692 MsG0880046051.01.T01:intron 25.0%
!!! AAAACACTTGTTTTCTATCT+TGG - Chr8:68282613-68282632 MsG0880046050.01.T01:CDS 25.0%
!!! ACTCTAAGACATACATTAAA+AGG + Chr8:68281457-68281476 MsG0880046051.01.T01:intron 25.0%
!!! TCTCATTCTTTTTGATAACT+CGG + Chr8:68282235-68282254 MsG0880046051.01.T01:intron 25.0%
AACCATTCTAAATCTCGTTT+CGG + Chr8:68282772-68282791 MsG0880046051.01.T01:intron 30.0%
AATGGATCTTGATCCTAATT+TGG + Chr8:68281584-68281603 MsG0880046051.01.T01:intron 30.0%
AATGGTCTATAATTCGGATT+TGG + Chr8:68280745-68280764 MsG0880046051.01.T01:intron 30.0%
ACAAAGCTAACACATTACTA+AGG + Chr8:68282357-68282376 MsG0880046051.01.T01:intron 30.0%
ACAAATACATGTAAAGCCTA+AGG - Chr8:68279853-68279872 None:intergenic 30.0%
AGAATCAAGAATCATATCAG+GGG + Chr8:68282041-68282060 MsG0880046051.01.T01:intron 30.0%
ATAAGTAGTTGTATCCTTCA+AGG + Chr8:68280705-68280724 MsG0880046051.01.T01:intron 30.0%
ATGTGAAATTGAAGATTACC+AGG + Chr8:68282998-68283017 MsG0880046051.01.T01:three_prime_UTR 30.0%
CTAAGTCATACATTAAAAGG+TGG + Chr8:68281392-68281411 MsG0880046051.01.T01:intron 30.0%
CTATTTGTTCTTGATCCATT+TGG + Chr8:68282721-68282740 MsG0880046051.01.T01:intron 30.0%
CTTGATCCAAAAGTCTAAAT+CGG - Chr8:68280501-68280520 None:intergenic 30.0%
GAAGAATCAAGAATCATATC+AGG + Chr8:68282039-68282058 MsG0880046051.01.T01:intron 30.0%
GAATGAATTTGATGTTGGAA+CGG - Chr8:68281088-68281107 None:intergenic 30.0%
GTCCATATTGTTTATTTGGT+TGG + Chr8:68279397-68279416 MsG0880046051.01.T01:CDS 30.0%
GTGTAACCTATTATTACACA+TGG - Chr8:68279983-68280002 None:intergenic 30.0%
GTGTCTAATGGTCTATAATT+CGG + Chr8:68280739-68280758 MsG0880046051.01.T01:intron 30.0%
TAAATATGCAGTAGAACTAC+AGG - Chr8:68281237-68281256 None:intergenic 30.0%
TATGGAAACATGGTTAAACT+CGG + Chr8:68282092-68282111 MsG0880046051.01.T01:intron 30.0%
TGAGCCAACAAAAACTTTAT+TGG + Chr8:68281045-68281064 MsG0880046051.01.T01:intron 30.0%
TGATAAATAATTATGGGGAC+TGG - Chr8:68281534-68281553 None:intergenic 30.0%
TGTTTATTTGGTTGGAACAT+AGG + Chr8:68279405-68279424 MsG0880046051.01.T01:CDS 30.0%
! AGTATAAGCTTGCAATTTTG+GGG - Chr8:68280393-68280412 None:intergenic 30.0%
! CACCAATGTTGTGATTTTAA+AGG + Chr8:68279956-68279975 MsG0880046051.01.T01:CDS 30.0%
! CATGGACTATAATGGAAATT+GGG - Chr8:68281715-68281734 MsG0880046050.01.T01:CDS 30.0%
! CATTTTGTGATCCATTATTC+AGG + Chr8:68282127-68282146 MsG0880046051.01.T01:intron 30.0%
! CTAGTATAAGCTTGCAATTT+TGG - Chr8:68280395-68280414 None:intergenic 30.0%
! GCATCCAATAAAGTTTTTGT+TGG - Chr8:68281052-68281071 None:intergenic 30.0%
! TCATGGACTATAATGGAAAT+TGG - Chr8:68281716-68281735 MsG0880046050.01.T01:CDS 30.0%
! TGAACCAATAATTTTGCCTA+AGG + Chr8:68280111-68280130 MsG0880046051.01.T01:CDS 30.0%
!! AAGGAGTTTGTTTTCTATGT+AGG + Chr8:68282376-68282395 MsG0880046051.01.T01:intron 30.0%
!! ACTTGTTTTCTATCTTGGAA+GGG - Chr8:68282608-68282627 MsG0880046050.01.T01:CDS 30.0%
!! CTTTAAAATCACAACATTGG+TGG - Chr8:68279958-68279977 None:intergenic 30.0%
!! GAATAATGGATCACAAAATG+TGG - Chr8:68282127-68282146 MsG0880046050.01.T01:CDS 30.0%
!! GACAAAATTTTGATCAGGTA+AGG + Chr8:68279880-68279899 MsG0880046051.01.T01:intron 30.0%
!! GGTTTGACAAAATTTTGATC+AGG + Chr8:68279875-68279894 MsG0880046051.01.T01:intron 30.0%
!! GTATCCGACTAAATTAGTTT+TGG + Chr8:68279655-68279674 MsG0880046051.01.T01:intron 30.0%
!!! TAATTAGTTTTGGTCATCTG+CGG + Chr8:68279325-68279344 MsG0880046051.01.T01:five_prime_UTR 30.0%
!!! TATTTTTGGTGATGAGTCTA+GGG + Chr8:68280336-68280355 MsG0880046051.01.T01:CDS 30.0%
AAAAGAATGAGAAGAGCAAG+AGG - Chr8:68282227-68282246 MsG0880046050.01.T01:CDS 35.0%
AAAATCCCCAGCTTGAAATA+TGG + Chr8:68280837-68280856 MsG0880046051.01.T01:intron 35.0%
AAACCAATCCTTCAAACTTC+TGG - Chr8:68282071-68282090 MsG0880046050.01.T01:CDS 35.0%
AAAGAATGAGAAGAGCAAGA+GGG - Chr8:68282226-68282245 MsG0880046050.01.T01:CDS 35.0%
AAAGGGCCATGTGTAATAAT+AGG + Chr8:68279974-68279993 MsG0880046051.01.T01:CDS 35.0%
AAATCCCCAGCTTGAAATAT+GGG + Chr8:68280838-68280857 MsG0880046051.01.T01:intron 35.0%
AAATTGGGATGTTCCTTATG+AGG - Chr8:68281700-68281719 MsG0880046050.01.T01:CDS 35.0%
AAGTTCTCAAGGGAATTTCA+TGG - Chr8:68281733-68281752 MsG0880046050.01.T01:CDS 35.0%
AGGCTTTACATGTATTTGTG+TGG + Chr8:68279854-68279873 MsG0880046051.01.T01:intron 35.0%
AGTGATGACTGAGAAATGTT+AGG - Chr8:68280950-68280969 None:intergenic 35.0%
ATATGTTCCAATGATTGCCT+TGG + Chr8:68281846-68281865 MsG0880046051.01.T01:intron 35.0%
ATGTGATTGTACACATCGTA+AGG + Chr8:68280586-68280605 MsG0880046051.01.T01:intron 35.0%
ATTAAAGTTCAAACGTGAGC+AGG + Chr8:68280553-68280572 MsG0880046051.01.T01:intron 35.0%
CAAATTCTCTATCGTTCCAA+TGG + Chr8:68279364-68279383 MsG0880046051.01.T01:CDS 35.0%
CCAACCTTAGGCAAAATTAT+TGG - Chr8:68280118-68280137 None:intergenic 35.0%
CCTTAAAATATGGAGAGTCT+TGG + Chr8:68282521-68282540 MsG0880046051.01.T01:intron 35.0%
CTAACTAAGTCATCCATTTG+TGG - Chr8:68280886-68280905 None:intergenic 35.0%
CTTTAGTATACTCCTACAGT+TGG + Chr8:68281913-68281932 MsG0880046051.01.T01:intron 35.0%
GAACGTTGGAAGACTAAATT+AGG - Chr8:68282318-68282337 MsG0880046050.01.T01:intron 35.0%
GCTATGCATATATAGCAAGA+TGG - Chr8:68281345-68281364 None:intergenic 35.0%
GCTGAGAATGAATTTGATGT+TGG - Chr8:68281093-68281112 None:intergenic 35.0%
GTATGTAAATGCGTGTCTAA+TGG + Chr8:68280727-68280746 MsG0880046051.01.T01:intron 35.0%
TACCGAAACGAGATTTAGAA+TGG - Chr8:68282777-68282796 MsG0880046050.01.T01:CDS 35.0%
TACTGAAGGATAGATTCTAC+TGG - Chr8:68281281-68281300 None:intergenic 35.0%
TAGAACTTCATTATGGGGTA+AGG + Chr8:68280412-68280431 MsG0880046051.01.T01:intron 35.0%
TAGGATCAAGATCCATTTGA+AGG - Chr8:68281581-68281600 None:intergenic 35.0%
TGACTTAGTTAGTGAATGCA+TGG + Chr8:68280894-68280913 MsG0880046051.01.T01:intron 35.0%
! AATCTTTCTCTCTTTTCCAG+TGG + Chr8:68282672-68282691 MsG0880046051.01.T01:intron 35.0%
! AGTTTTACTACACCAACTGT+AGG - Chr8:68281928-68281947 MsG0880046050.01.T01:intron 35.0%
! ATAATTTTGCCTAAGGTTGG+TGG + Chr8:68280118-68280137 MsG0880046051.01.T01:CDS 35.0%
! CCAAGACTCTCCATATTTTA+AGG - Chr8:68282524-68282543 MsG0880046050.01.T01:CDS 35.0%
! CCAATAATTTTGCCTAAGGT+TGG + Chr8:68280115-68280134 MsG0880046051.01.T01:CDS 35.0%
! CTCATAGTTTTTGCACTAGT+TGG - Chr8:68281029-68281048 None:intergenic 35.0%
! GGGAATTTCATGGACTATAA+TGG - Chr8:68281723-68281742 MsG0880046050.01.T01:CDS 35.0%
! GTAGCGTCTTTGTATTTTCA+CGG - Chr8:68282477-68282496 MsG0880046050.01.T01:intron 35.0%
!! ACAGACAACTCTTTCAAGTT+TGG + Chr8:68280001-68280020 MsG0880046051.01.T01:CDS 35.0%
!! CACTTGTTTTCTATCTTGGA+AGG - Chr8:68282609-68282628 MsG0880046050.01.T01:CDS 35.0%
!! CTTTAGCTTTAACAGAACGT+TGG - Chr8:68282332-68282351 MsG0880046050.01.T01:intron 35.0%
!! GATGGATTTTCTCAGATACT+TGG - Chr8:68281327-68281346 None:intergenic 35.0%
!! GATTGGTTTCTATGGAAACA+TGG + Chr8:68282082-68282101 MsG0880046051.01.T01:intron 35.0%
!! GCCCTTTAAAATCACAACAT+TGG - Chr8:68279961-68279980 None:intergenic 35.0%
!! GTTTGAAGGATTGGTTTCTA+TGG + Chr8:68282074-68282093 MsG0880046051.01.T01:intron 35.0%
!! TGGTTAGCTGGAATTTTACT+TGG - Chr8:68281514-68281533 None:intergenic 35.0%
!! TTCAGATTTTAGAAAGGCTC+AGG + Chr8:68281645-68281664 MsG0880046051.01.T01:intron 35.0%
!!! CTATTTTTGGTGATGAGTCT+AGG + Chr8:68280335-68280354 MsG0880046051.01.T01:CDS 35.0%
!!! TTGTCACCGATTTAGACTTT+TGG + Chr8:68280492-68280511 MsG0880046051.01.T01:intron 35.0%
AAGAGAGAAAGATTGTGTGC+CGG - Chr8:68282666-68282685 MsG0880046050.01.T01:CDS 40.0%
ACAAATAGAGCTACCAAAGC+TGG - Chr8:68282709-68282728 MsG0880046050.01.T01:CDS 40.0%
ACATGGTTAAACTCGGCAAT+TGG + Chr8:68282099-68282118 MsG0880046051.01.T01:intron 40.0%
AGACAAGCCAAGTCTAGATT+GGG + Chr8:68280277-68280296 MsG0880046051.01.T01:CDS 40.0%
AGACAATCCCAATCTAGACT+TGG - Chr8:68280287-68280306 None:intergenic 40.0%
AGAGTCTTGGCTAAGATCAT+CGG + Chr8:68282534-68282553 MsG0880046051.01.T01:intron 40.0%
ATTCTCTATCGTTCCAATGG+AGG + Chr8:68279367-68279386 MsG0880046051.01.T01:CDS 40.0%
CAAGCAAGTCACCTGAATAA+TGG - Chr8:68282141-68282160 MsG0880046050.01.T01:CDS 40.0%
CACCTTACTCAAGTTCTCAA+GGG - Chr8:68281743-68281762 MsG0880046050.01.T01:CDS 40.0%
CACGCATTTACATACCTTGA+AGG - Chr8:68280722-68280741 None:intergenic 40.0%
CATTTCACACCTCATGCATT+AGG + Chr8:68282812-68282831 MsG0880046051.01.T01:intron 40.0%
CCAACACCAGAATTAGTATC+AGG - Chr8:68280250-68280269 None:intergenic 40.0%
CCTGATACTAATTCTGGTGT+TGG + Chr8:68280247-68280266 MsG0880046051.01.T01:CDS 40.0%
CTGTGCTTCTATATCCTTCA+GGG - Chr8:68280036-68280055 None:intergenic 40.0%
CTTTAGGCGATAGAACTAAC+TGG - Chr8:68282582-68282601 MsG0880046050.01.T01:CDS 40.0%
GATCCAGAAGTTTGAAGGAT+TGG + Chr8:68282065-68282084 MsG0880046051.01.T01:intron 40.0%
GCATATATGTGGTTGCTGTA+GGG - Chr8:68282276-68282295 MsG0880046050.01.T01:intron 40.0%
GGGATTGTCTTATGCCAAAA+GGG + Chr8:68280297-68280316 MsG0880046051.01.T01:CDS 40.0%
GTCACTTGAGAATCTCATTG+AGG + Chr8:68282170-68282189 MsG0880046051.01.T01:intron 40.0%
GTTGCAACAAGTTCCATCAA+TGG - Chr8:68282204-68282223 MsG0880046050.01.T01:CDS 40.0%
TCAATTGCAAGGCTATGATC+TGG - Chr8:68282433-68282452 MsG0880046050.01.T01:intron 40.0%
TCACCTTACTCAAGTTCTCA+AGG - Chr8:68281744-68281763 MsG0880046050.01.T01:CDS 40.0%
TCCACTTGTTTGCCTTCAAA+TGG + Chr8:68281566-68281585 MsG0880046051.01.T01:intron 40.0%
TCCATTTGAAGGCAAACAAG+TGG - Chr8:68281570-68281589 None:intergenic 40.0%
TCTGTGCTTCTATATCCTTC+AGG - Chr8:68280037-68280056 None:intergenic 40.0%
TCTTATGCCAAAAGGGAAGA+TGG + Chr8:68280304-68280323 MsG0880046051.01.T01:CDS 40.0%
TGAATCACCAAGGCAATCAT+TGG - Chr8:68281856-68281875 MsG0880046050.01.T01:CDS 40.0%
TGCATATATGTGGTTGCTGT+AGG - Chr8:68282277-68282296 MsG0880046050.01.T01:intron 40.0%
TGGGATTGTCTTATGCCAAA+AGG + Chr8:68280296-68280315 MsG0880046051.01.T01:CDS 40.0%
TGTAGTTCATCCACTATCAC+AGG - Chr8:68282643-68282662 MsG0880046050.01.T01:CDS 40.0%
TGTTTGATTATGCTCGTGGT+GGG + Chr8:68280155-68280174 MsG0880046051.01.T01:CDS 40.0%
TTCCCTTGAGAACTTGAGTA+AGG + Chr8:68281738-68281757 MsG0880046051.01.T01:intron 40.0%
TTTGAGAAGCCTAATGCATG+AGG - Chr8:68282824-68282843 MsG0880046050.01.T01:intron 40.0%
! ACTGGATCATGCAAGAGTAT+CGG - Chr8:68282564-68282583 MsG0880046050.01.T01:CDS 40.0%
! CGAGATCTAAAGTACCCAAA+TGG - Chr8:68282739-68282758 MsG0880046050.01.T01:CDS 40.0%
! CTTTTACTTTAACGTGCGGT+GGG - Chr8:68282408-68282427 MsG0880046050.01.T01:intron 40.0%
! GATGGCAAGGAGTCTATTTT+TGG + Chr8:68280322-68280341 MsG0880046051.01.T01:CDS 40.0%
! GGAGCTTTTACTTTAACGTG+CGG - Chr8:68282412-68282431 MsG0880046050.01.T01:intron 40.0%
! TTTGGTGCATTTAACCCTGA+AGG + Chr8:68280019-68280038 MsG0880046051.01.T01:CDS 40.0%
!! AGCTGGAATTTTACTTGGTG+TGG - Chr8:68281509-68281528 None:intergenic 40.0%
!! ATGGACTTGTTTTCCTCCAT+TGG - Chr8:68279383-68279402 None:intergenic 40.0%
!! CAGTTAGTTCTATCGCCTAA+AGG + Chr8:68282580-68282599 MsG0880046051.01.T01:intron 40.0%
!! TACTTGGTGTGGCATTACTA+GGG - Chr8:68281498-68281517 None:intergenic 40.0%
!! TGATAGTGGATGAACTACAC+CGG + Chr8:68282644-68282663 MsG0880046051.01.T01:intron 40.0%
!! TTACTTGGTGTGGCATTACT+AGG - Chr8:68281499-68281518 None:intergenic 40.0%
AGAGGACCCATATTTCAAGC+TGG - Chr8:68280847-68280866 None:intergenic 45.0%
AGCAAAACCACCCATAACTG+GGG - Chr8:68280224-68280243 None:intergenic 45.0%
AGGAACTGAAATGCTGCTAC+AGG + Chr8:68279900-68279919 MsG0880046051.01.T01:CDS 45.0%
AGGACCCATATTTCAAGCTG+GGG - Chr8:68280845-68280864 None:intergenic 45.0%
AGTCATCCATTTGTGGCAGT+TGG - Chr8:68280879-68280898 None:intergenic 45.0%
CAGATACTTGGCCAATTTGC+TGG - Chr8:68281315-68281334 None:intergenic 45.0%
CAGCAAAACCACCCATAACT+GGG - Chr8:68280225-68280244 None:intergenic 45.0%
CTCCTAGTTGTGAATCACCA+AGG - Chr8:68281866-68281885 MsG0880046050.01.T01:CDS 45.0%
CTGTTTGATTATGCTCGTGG+TGG + Chr8:68280154-68280173 MsG0880046051.01.T01:CDS 45.0%
CTTGATCCAACTGCCACAAA+TGG + Chr8:68280870-68280889 MsG0880046051.01.T01:intron 45.0%
GAGACAAGCCAAGTCTAGAT+TGG + Chr8:68280276-68280295 MsG0880046051.01.T01:CDS 45.0%
GAGGACCCATATTTCAAGCT+GGG - Chr8:68280846-68280865 None:intergenic 45.0%
GCTCTGTTTGATTATGCTCG+TGG + Chr8:68280151-68280170 MsG0880046051.01.T01:CDS 45.0%
GGAACTGAAATGCTGCTACA+GGG + Chr8:68279901-68279920 MsG0880046051.01.T01:CDS 45.0%
TATATGTGGTTGCTGTAGGG+TGG - Chr8:68282273-68282292 MsG0880046050.01.T01:intron 45.0%
TATCTTGGAAGGGCTCCTTT+AGG - Chr8:68282598-68282617 MsG0880046050.01.T01:CDS 45.0%
TCCATTCAGTGCCAGCAAAT+TGG + Chr8:68281301-68281320 MsG0880046051.01.T01:intron 45.0%
TGAGGTCTCACTTCCATTGA+TGG + Chr8:68282188-68282207 MsG0880046051.01.T01:intron 45.0%
TGCTACAGGGCAACAATTGA+TGG + Chr8:68279914-68279933 MsG0880046051.01.T01:CDS 45.0%
TGGCATTACTAGGGATCTCT+GGG - Chr8:68281489-68281508 None:intergenic 45.0%
TTGAACGCACGTCAATTGCA+AGG - Chr8:68282444-68282463 MsG0880046050.01.T01:intron 45.0%
TTTGCAGTTGCCTGTGATAG+TGG + Chr8:68282630-68282649 MsG0880046051.01.T01:intron 45.0%
! CTTGGTGATTCACAACTAGG+AGG + Chr8:68281864-68281883 MsG0880046051.01.T01:intron 45.0%
! GCTTTTACTTTAACGTGCGG+TGG - Chr8:68282409-68282428 MsG0880046050.01.T01:intron 45.0%
! TGCCTTGGTGATTCACAACT+AGG + Chr8:68281861-68281880 MsG0880046051.01.T01:intron 45.0%
! TGGCACTGAATGGATACTGA+AGG - Chr8:68281295-68281314 None:intergenic 45.0%
!! AATTATGGGGACTGGTTAGC+TGG - Chr8:68281526-68281545 None:intergenic 45.0%
!! CAGTTATGGGTGGTTTTGCT+GGG + Chr8:68280224-68280243 MsG0880046051.01.T01:CDS 45.0%
!!! TAGTTTTGGTCATCTGCGGA+TGG + Chr8:68279329-68279348 MsG0880046051.01.T01:intron 45.0%
ACCCATAACTGGGGCTAATG+GGG - Chr8:68280215-68280234 None:intergenic 50.0%
AGATTACCAGGCAACTCCCA+TGG + Chr8:68283010-68283029 MsG0880046051.01.T01:three_prime_UTR 50.0%
CACCCATAACTGGGGCTAAT+GGG - Chr8:68280216-68280235 None:intergenic 50.0%
CCAGCAAAACCACCCATAAC+TGG - Chr8:68280226-68280245 None:intergenic 50.0%
GCTGGGCCTGATACTAATTC+TGG + Chr8:68280241-68280260 MsG0880046051.01.T01:CDS 50.0%
GGATTTCCAGTAGCCAGCTT+TGG + Chr8:68282693-68282712 MsG0880046051.01.T01:intron 50.0%
GGCAGTTGGATCAAGATCAG+AGG - Chr8:68280865-68280884 None:intergenic 50.0%
GGGGAGATCCAGAAGTTTGA+AGG + Chr8:68282060-68282079 MsG0880046051.01.T01:intron 50.0%
GTGGCATTACTAGGGATCTC+TGG - Chr8:68281490-68281509 None:intergenic 50.0%
TGCCAAAAGGGAAGATGGCA+AGG + Chr8:68280309-68280328 MsG0880046051.01.T01:CDS 50.0%
TTTGATCCATGGGAGTTGCC+TGG - Chr8:68283019-68283038 MsG0880046050.01.T01:CDS 50.0%
! CTCCTTGCCATCTTCCCTTT+TGG - Chr8:68280314-68280333 None:intergenic 50.0%
!! CCAGTTATGGGTGGTTTTGC+TGG + Chr8:68280223-68280242 MsG0880046051.01.T01:CDS 50.0%
!! GCCAATTTGCTGGCACTGAA+TGG - Chr8:68281305-68281324 None:intergenic 50.0%
AGCCCATCAGCCCCAAATTG+CGG - Chr8:68280181-68280200 None:intergenic 55.0%
CCACCCATAACTGGGGCTAA+TGG - Chr8:68280217-68280236 None:intergenic 55.0%
CCATTAGCCCCAGTTATGGG+TGG + Chr8:68280214-68280233 MsG0880046051.01.T01:CDS 55.0%
CCCATAACTGGGGCTAATGG+GGG - Chr8:68280214-68280233 None:intergenic 55.0%
CCCCCATTAGCCCCAGTTAT+GGG + Chr8:68280211-68280230 MsG0880046051.01.T01:CDS 55.0%
GAGCTACCAAAGCTGGCTAC+TGG - Chr8:68282702-68282721 MsG0880046050.01.T01:CDS 55.0%
GCTGGCTACTGGAAATCCAC+TGG - Chr8:68282691-68282710 MsG0880046050.01.T01:CDS 55.0%
TGCACGCGCGTGCATATATG+TGG - Chr8:68282287-68282306 MsG0880046050.01.T01:intron 55.0%
!! TTGCCTAAGGTTGGTGGCAG+TGG + Chr8:68280124-68280143 MsG0880046051.01.T01:CDS 55.0%
GCACCACTGCCACCAACCTT+AGG - Chr8:68280130-68280149 None:intergenic 60.0%
GCCCCCATTAGCCCCAGTTA+TGG + Chr8:68280210-68280229 MsG0880046051.01.T01:CDS 60.0%
! GGCCGCAATTTGGGGCTGAT+GGG + Chr8:68280176-68280195 MsG0880046051.01.T01:CDS 60.0%
!! CTCGTGGTGGGCCGCAATTT+GGG + Chr8:68280167-68280186 MsG0880046051.01.T01:CDS 60.0%
!! GGGCTGATGGGCTTCTCATC+GGG + Chr8:68280188-68280207 MsG0880046051.01.T01:CDS 60.0%
!! GGGGCTGATGGGCTTCTCAT+CGG + Chr8:68280187-68280206 MsG0880046051.01.T01:CDS 60.0%
!! TCGTGGTGGGCCGCAATTTG+GGG + Chr8:68280168-68280187 MsG0880046051.01.T01:CDS 60.0%
! GGGCCGCAATTTGGGGCTGA+TGG + Chr8:68280175-68280194 MsG0880046051.01.T01:CDS 65.0%
!! GCTCGTGGTGGGCCGCAATT+TGG + Chr8:68280166-68280185 MsG0880046051.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 68279295 68283080 68279295 ID=MsG0880046051.01;Name=MsG0880046051.01
Chr8 mRNA 68279295 68283080 68279295 ID=MsG0880046051.01.T01;Parent=MsG0880046051.01;Name=MsG0880046051.01.T01;_AED=0.45;_eAED=0.45;_QI=53|1|1|1|0.5|0.33|3|106|229
Chr8 exon 68279897 68280428 68279897 ID=MsG0880046051.01.T01:exon:671;Parent=MsG0880046051.01.T01
Chr8 exon 68282989 68283080 68282989 ID=MsG0880046051.01.T01:exon:672;Parent=MsG0880046051.01.T01
Chr8 five_prime_UTR 68279295 68279347 68279295 ID=MsG0880046051.01.T01:five_prime_utr;Parent=MsG0880046051.01.T01
Chr8 CDS 68279348 68279519 68279348 ID=MsG0880046051.01.T01:cds;Parent=MsG0880046051.01.T01
Chr8 CDS 68279897 68280414 68279897 ID=MsG0880046051.01.T01:cds;Parent=MsG0880046051.01.T01
Chr8 three_prime_UTR 68280415 68280428 68280415 ID=MsG0880046051.01.T01:three_prime_utr;Parent=MsG0880046051.01.T01
Chr8 three_prime_UTR 68282989 68283080 68282989 ID=MsG0880046051.01.T01:three_prime_utr;Parent=MsG0880046051.01.T01
Chr8 mRNA 68279295 68280993 68279295 ID=MsG0880046051.01.T02;Parent=MsG0880046051.01;Name=MsG0880046051.01.T02;_AED=0.43;_eAED=0.43;_QI=53|1|1|1|1|1|2|579|229
Chr8 exon 68279897 68280993 68279897 ID=MsG0880046051.01.T02:exon:673;Parent=MsG0880046051.01.T02
Chr8 five_prime_UTR 68279295 68279347 68279295 ID=MsG0880046051.01.T02:five_prime_utr;Parent=MsG0880046051.01.T02
Chr8 CDS 68279348 68279519 68279348 ID=MsG0880046051.01.T02:cds;Parent=MsG0880046051.01.T02
Chr8 CDS 68279897 68280414 68279897 ID=MsG0880046051.01.T02:cds;Parent=MsG0880046051.01.T02
Chr8 three_prime_UTR 68280415 68280993 68280415 ID=MsG0880046051.01.T02:three_prime_utr;Parent=MsG0880046051.01.T02
Gene Sequence

>MsG0880046051.01.T02

ATGGCATCTTGTATCTCAAATTCTCTATCGTTCCAATGGAGGAAAACAAGTCCATATTGTTTATTTGGTTGGAACATAGGCAGAAAGAGAGTTGATGACAAACCTCAGATTAAATATCATGATATTGATCTCACTTTCTCAACTTCTCTAGTTAACAAAACATTTTTGAAAGGTAAGGAACTGAAATGCTGCTACAGGGCAACAATTGATGGATTTAGTGCAACAAATTTCCACCAATGTTGTGATTTTAAAGGGCCATGTGTAATAATAGGTTACACAGACAACTCTTTCAAGTTTGGTGCATTTAACCCTGAAGGATATAGAAGCACAGATGATTACTATGAAACATTTGATGCATTTCTATTTTATTGGGTAGAAAATAAAAATGAACCAATAATTTTGCCTAAGGTTGGTGGCAGTGGTGCAGCTCTGTTTGATTATGCTCGTGGTGGGCCGCAATTTGGGGCTGATGGGCTTCTCATCGGGCCCCCATTAGCCCCAGTTATGGGTGGTTTTGCTGGGCCTGATACTAATTCTGGTGTTGGTGACTTGAGACAAGCCAAGTCTAGATTGGGATTGTCTTATGCCAAAAGGGAAGATGGCAAGGAGTCTATTTTTGGTGATGAGTCTAGGGCAACTATTCAAGAAGTAGAAGTGTTTTGTAGCCCCAAAATTGCAAGCTTATACTAG

>MsG0880046051.01.T01

ATGGCATCTTGTATCTCAAATTCTCTATCGTTCCAATGGAGGAAAACAAGTCCATATTGTTTATTTGGTTGGAACATAGGCAGAAAGAGAGTTGATGACAAACCTCAGATTAAATATCATGATATTGATCTCACTTTCTCAACTTCTCTAGTTAACAAAACATTTTTGAAAGGTAAGGAACTGAAATGCTGCTACAGGGCAACAATTGATGGATTTAGTGCAACAAATTTCCACCAATGTTGTGATTTTAAAGGGCCATGTGTAATAATAGGTTACACAGACAACTCTTTCAAGTTTGGTGCATTTAACCCTGAAGGATATAGAAGCACAGATGATTACTATGAAACATTTGATGCATTTCTATTTTATTGGGTAGAAAATAAAAATGAACCAATAATTTTGCCTAAGGTTGGTGGCAGTGGTGCAGCTCTGTTTGATTATGCTCGTGGTGGGCCGCAATTTGGGGCTGATGGGCTTCTCATCGGGCCCCCATTAGCCCCAGTTATGGGTGGTTTTGCTGGGCCTGATACTAATTCTGGTGTTGGTGACTTGAGACAAGCCAAGTCTAGATTGGGATTGTCTTATGCCAAAAGGGAAGATGGCAAGGAGTCTATTTTTGGTGATGAGTCTAGGGCAACTATTCAAGAAGTAGAAGTGTTTTGTAGCCCCAAAATTGCAAGCTTATACTAG

Protein sequence

>MsG0880046051.01.T02

MASCISNSLSFQWRKTSPYCLFGWNIGRKRVDDKPQIKYHDIDLTFSTSLVNKTFLKGKELKCCYRATIDGFSATNFHQCCDFKGPCVIIGYTDNSFKFGAFNPEGYRSTDDYYETFDAFLFYWVENKNEPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGVGDLRQAKSRLGLSYAKREDGKESIFGDESRATIQEVEVFCSPKIASLY*

>MsG0880046051.01.T01

MASCISNSLSFQWRKTSPYCLFGWNIGRKRVDDKPQIKYHDIDLTFSTSLVNKTFLKGKELKCCYRATIDGFSATNFHQCCDFKGPCVIIGYTDNSFKFGAFNPEGYRSTDDYYETFDAFLFYWVENKNEPIILPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVMGGFAGPDTNSGVGDLRQAKSRLGLSYAKREDGKESIFGDESRATIQEVEVFCSPKIASLY*