AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006337.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006337.01.T03 MTR_2g006330 68.000 100 11 2 46 124 42 141 1.99e-40 135
MsG0280006337.01.T03 MTR_2g006330 68.000 100 11 2 46 124 118 217 4.86e-40 137
MsG0280006337.01.T03 MTR_3g097320 63.810 105 17 2 41 124 113 217 1.04e-38 133
MsG0280006337.01.T03 MTR_8g095330 66.000 100 13 2 46 124 119 218 1.50e-38 133
MsG0280006337.01.T03 MTR_4g086855 62.000 100 17 2 46 124 42 141 5.36e-37 127
MsG0280006337.01.T03 MTR_4g086855 62.000 100 17 2 46 124 137 236 1.91e-36 127
MsG0280006337.01.T03 MTR_1g034030 62.000 100 17 2 46 124 138 237 2.11e-36 127
MsG0280006337.01.T03 MTR_1g034030 62.626 99 16 2 46 123 138 236 6.46e-36 125
MsG0280006337.01.T03 MTR_8g089975 61.000 100 18 2 46 124 42 141 9.49e-36 123
MsG0280006337.01.T03 MTR_8g089975 61.000 100 18 2 46 124 118 217 3.25e-35 124
MsG0280006337.01.T03 MTR_4g099240 58.000 100 21 2 46 124 119 218 8.85e-35 122
MsG0280006337.01.T03 MTR_8g079560 58.000 100 21 2 46 124 137 236 1.25e-33 120
MsG0280006337.01.T03 MTR_3g086940 60.000 100 19 2 46 124 119 218 2.67e-33 119
MsG0280006337.01.T03 MTR_5g013550 58.000 100 21 2 46 124 120 219 4.94e-33 118
MsG0280006337.01.T03 MTR_5g064540 60.204 98 18 2 47 123 119 216 5.49e-33 116
MsG0280006337.01.T03 MTR_5g018050 59.184 98 19 2 46 122 132 229 8.01e-33 115
MsG0280006337.01.T03 MTR_5g064540 59.596 99 19 2 47 124 119 217 3.99e-32 115
MsG0280006337.01.T03 MTR_5g018050 57.576 99 21 2 46 123 99 197 1.24e-31 114
MsG0280006337.01.T03 MTR_5g018050 57.000 100 22 2 46 124 132 231 1.34e-31 115
MsG0280006337.01.T03 MTR_4g099220 51.000 100 28 2 46 124 125 224 3.81e-26 100
MsG0280006337.01.T03 MTR_8g088740 50.685 73 10 4 47 97 119 187 6.34e-12 60.1
MsG0280006337.01.T01 MTR_2g006330 68.000 100 11 2 46 124 42 141 1.99e-40 135
MsG0280006337.01.T01 MTR_2g006330 68.000 100 11 2 46 124 118 217 4.86e-40 137
MsG0280006337.01.T01 MTR_3g097320 63.810 105 17 2 41 124 113 217 1.04e-38 133
MsG0280006337.01.T01 MTR_8g095330 66.000 100 13 2 46 124 119 218 1.50e-38 133
MsG0280006337.01.T01 MTR_4g086855 62.000 100 17 2 46 124 42 141 5.36e-37 127
MsG0280006337.01.T01 MTR_4g086855 62.000 100 17 2 46 124 137 236 1.91e-36 127
MsG0280006337.01.T01 MTR_1g034030 62.000 100 17 2 46 124 138 237 2.11e-36 127
MsG0280006337.01.T01 MTR_1g034030 62.626 99 16 2 46 123 138 236 6.46e-36 125
MsG0280006337.01.T01 MTR_8g089975 61.000 100 18 2 46 124 42 141 9.49e-36 123
MsG0280006337.01.T01 MTR_8g089975 61.000 100 18 2 46 124 118 217 3.25e-35 124
MsG0280006337.01.T01 MTR_4g099240 58.000 100 21 2 46 124 119 218 8.85e-35 122
MsG0280006337.01.T01 MTR_8g079560 58.000 100 21 2 46 124 137 236 1.25e-33 120
MsG0280006337.01.T01 MTR_3g086940 60.000 100 19 2 46 124 119 218 2.67e-33 119
MsG0280006337.01.T01 MTR_5g013550 58.000 100 21 2 46 124 120 219 4.94e-33 118
MsG0280006337.01.T01 MTR_5g064540 60.204 98 18 2 47 123 119 216 5.49e-33 116
MsG0280006337.01.T01 MTR_5g018050 59.184 98 19 2 46 122 132 229 8.01e-33 115
MsG0280006337.01.T01 MTR_5g064540 59.596 99 19 2 47 124 119 217 3.99e-32 115
MsG0280006337.01.T01 MTR_5g018050 57.576 99 21 2 46 123 99 197 1.24e-31 114
MsG0280006337.01.T01 MTR_5g018050 57.000 100 22 2 46 124 132 231 1.34e-31 115
MsG0280006337.01.T01 MTR_4g099220 51.000 100 28 2 46 124 125 224 3.81e-26 100
MsG0280006337.01.T01 MTR_8g088740 50.685 73 10 4 47 97 119 187 6.34e-12 60.1
MsG0280006337.01.T02 MTR_2g006330 68.000 100 11 2 46 124 42 141 1.99e-40 135
MsG0280006337.01.T02 MTR_2g006330 68.000 100 11 2 46 124 118 217 4.86e-40 137
MsG0280006337.01.T02 MTR_3g097320 63.810 105 17 2 41 124 113 217 1.04e-38 133
MsG0280006337.01.T02 MTR_8g095330 66.000 100 13 2 46 124 119 218 1.50e-38 133
MsG0280006337.01.T02 MTR_4g086855 62.000 100 17 2 46 124 42 141 5.36e-37 127
MsG0280006337.01.T02 MTR_4g086855 62.000 100 17 2 46 124 137 236 1.91e-36 127
MsG0280006337.01.T02 MTR_1g034030 62.000 100 17 2 46 124 138 237 2.11e-36 127
MsG0280006337.01.T02 MTR_1g034030 62.626 99 16 2 46 123 138 236 6.46e-36 125
MsG0280006337.01.T02 MTR_8g089975 61.000 100 18 2 46 124 42 141 9.49e-36 123
MsG0280006337.01.T02 MTR_8g089975 61.000 100 18 2 46 124 118 217 3.25e-35 124
MsG0280006337.01.T02 MTR_4g099240 58.000 100 21 2 46 124 119 218 8.85e-35 122
MsG0280006337.01.T02 MTR_8g079560 58.000 100 21 2 46 124 137 236 1.25e-33 120
MsG0280006337.01.T02 MTR_3g086940 60.000 100 19 2 46 124 119 218 2.67e-33 119
MsG0280006337.01.T02 MTR_5g013550 58.000 100 21 2 46 124 120 219 4.94e-33 118
MsG0280006337.01.T02 MTR_5g064540 60.204 98 18 2 47 123 119 216 5.49e-33 116
MsG0280006337.01.T02 MTR_5g018050 59.184 98 19 2 46 122 132 229 8.01e-33 115
MsG0280006337.01.T02 MTR_5g064540 59.596 99 19 2 47 124 119 217 3.99e-32 115
MsG0280006337.01.T02 MTR_5g018050 57.576 99 21 2 46 123 99 197 1.24e-31 114
MsG0280006337.01.T02 MTR_5g018050 57.000 100 22 2 46 124 132 231 1.34e-31 115
MsG0280006337.01.T02 MTR_4g099220 51.000 100 28 2 46 124 125 224 3.81e-26 100
MsG0280006337.01.T02 MTR_8g088740 50.685 73 10 4 47 97 119 187 6.34e-12 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006337.01.T03 AT1G10940 65.000 100 14 2 46 124 118 217 1.87e-38 133
MsG0280006337.01.T03 AT1G10940 65.000 100 14 2 46 124 126 225 2.13e-38 133
MsG0280006337.01.T03 AT1G60940 66.000 100 13 2 46 124 118 217 7.88e-38 131
MsG0280006337.01.T03 AT1G60940 66.000 100 13 2 46 124 118 217 7.88e-38 131
MsG0280006337.01.T03 AT4G33950 62.000 100 17 2 46 124 135 234 3.22e-36 127
MsG0280006337.01.T03 AT4G33950 62.000 100 17 2 46 124 135 234 3.96e-36 127
MsG0280006337.01.T03 AT5G08590 63.000 100 16 2 46 124 42 141 5.75e-36 124
MsG0280006337.01.T03 AT5G08590 63.000 100 16 2 46 124 118 217 1.79e-35 125
MsG0280006337.01.T03 AT5G63650 62.000 100 17 2 46 124 118 217 3.95e-35 124
MsG0280006337.01.T03 AT3G50500 61.000 100 18 2 46 124 137 236 9.32e-35 123
MsG0280006337.01.T03 AT5G66880 60.000 100 19 2 46 124 136 235 1.01e-34 123
MsG0280006337.01.T03 AT5G66880 60.000 100 19 2 46 124 136 235 1.01e-34 123
MsG0280006337.01.T03 AT2G23030 58.333 108 24 2 41 127 113 220 1.42e-34 122
MsG0280006337.01.T03 AT3G50500 56.364 110 14 2 46 124 137 243 5.78e-34 121
MsG0280006337.01.T03 AT1G78290 60.000 100 19 2 46 124 118 217 7.04e-34 120
MsG0280006337.01.T03 AT1G78290 60.000 100 19 2 46 124 118 217 7.04e-34 120
MsG0280006337.01.T03 AT4G40010 59.000 100 20 2 46 124 118 217 4.67e-32 116
MsG0280006337.01.T01 AT1G10940 65.000 100 14 2 46 124 118 217 1.87e-38 133
MsG0280006337.01.T01 AT1G10940 65.000 100 14 2 46 124 126 225 2.13e-38 133
MsG0280006337.01.T01 AT1G60940 66.000 100 13 2 46 124 118 217 7.88e-38 131
MsG0280006337.01.T01 AT1G60940 66.000 100 13 2 46 124 118 217 7.88e-38 131
MsG0280006337.01.T01 AT4G33950 62.000 100 17 2 46 124 135 234 3.22e-36 127
MsG0280006337.01.T01 AT4G33950 62.000 100 17 2 46 124 135 234 3.96e-36 127
MsG0280006337.01.T01 AT5G08590 63.000 100 16 2 46 124 42 141 5.75e-36 124
MsG0280006337.01.T01 AT5G08590 63.000 100 16 2 46 124 118 217 1.79e-35 125
MsG0280006337.01.T01 AT5G63650 62.000 100 17 2 46 124 118 217 3.95e-35 124
MsG0280006337.01.T01 AT3G50500 61.000 100 18 2 46 124 137 236 9.32e-35 123
MsG0280006337.01.T01 AT5G66880 60.000 100 19 2 46 124 136 235 1.01e-34 123
MsG0280006337.01.T01 AT5G66880 60.000 100 19 2 46 124 136 235 1.01e-34 123
MsG0280006337.01.T01 AT2G23030 58.333 108 24 2 41 127 113 220 1.42e-34 122
MsG0280006337.01.T01 AT3G50500 56.364 110 14 2 46 124 137 243 5.78e-34 121
MsG0280006337.01.T01 AT1G78290 60.000 100 19 2 46 124 118 217 7.04e-34 120
MsG0280006337.01.T01 AT1G78290 60.000 100 19 2 46 124 118 217 7.04e-34 120
MsG0280006337.01.T01 AT4G40010 59.000 100 20 2 46 124 118 217 4.67e-32 116
MsG0280006337.01.T02 AT1G10940 65.000 100 14 2 46 124 118 217 1.87e-38 133
MsG0280006337.01.T02 AT1G10940 65.000 100 14 2 46 124 126 225 2.13e-38 133
MsG0280006337.01.T02 AT1G60940 66.000 100 13 2 46 124 118 217 7.88e-38 131
MsG0280006337.01.T02 AT1G60940 66.000 100 13 2 46 124 118 217 7.88e-38 131
MsG0280006337.01.T02 AT4G33950 62.000 100 17 2 46 124 135 234 3.22e-36 127
MsG0280006337.01.T02 AT4G33950 62.000 100 17 2 46 124 135 234 3.96e-36 127
MsG0280006337.01.T02 AT5G08590 63.000 100 16 2 46 124 42 141 5.75e-36 124
MsG0280006337.01.T02 AT5G08590 63.000 100 16 2 46 124 118 217 1.79e-35 125
MsG0280006337.01.T02 AT5G63650 62.000 100 17 2 46 124 118 217 3.95e-35 124
MsG0280006337.01.T02 AT3G50500 61.000 100 18 2 46 124 137 236 9.32e-35 123
MsG0280006337.01.T02 AT5G66880 60.000 100 19 2 46 124 136 235 1.01e-34 123
MsG0280006337.01.T02 AT5G66880 60.000 100 19 2 46 124 136 235 1.01e-34 123
MsG0280006337.01.T02 AT2G23030 58.333 108 24 2 41 127 113 220 1.42e-34 122
MsG0280006337.01.T02 AT3G50500 56.364 110 14 2 46 124 137 243 5.78e-34 121
MsG0280006337.01.T02 AT1G78290 60.000 100 19 2 46 124 118 217 7.04e-34 120
MsG0280006337.01.T02 AT1G78290 60.000 100 19 2 46 124 118 217 7.04e-34 120
MsG0280006337.01.T02 AT4G40010 59.000 100 20 2 46 124 118 217 4.67e-32 116

Find 30 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGTGATACGATTAATTATT+TGG 0.124989 2:-613632 None:intergenic
CAAGCTGTTTGGTATCTTTC+TGG 0.145548 2:-613803 None:intergenic
GATATAGGATCTGGAAATTT+TGG 0.193667 2:+613762 MsG0280006337.01.T01:five_prime_UTR
GAACAGAAAGAAAGATTAAT+TGG 0.211637 2:-613597 None:intergenic
GACCTCGTTCTATATATTCA+TGG 0.358243 2:-613829 None:intergenic
GGAGAAGTACGAGGTGGTTA+AGG 0.368586 2:+613740 MsG0280006337.01.T01:five_prime_UTR
GTGGTTATGTTATGTTTAGA+AGG 0.399058 2:-613569 None:intergenic
ATTCATGGCAACAAGCTGTT+TGG 0.418937 2:-613814 None:intergenic
TACGATTAATTATTTGGAAA+GGG 0.429561 2:-613626 None:intergenic
TACGAGGTGGTTAAGGATAT+AGG 0.447227 2:+613747 MsG0280006337.01.T01:five_prime_UTR
GTGGTTAAGGATATAGGATC+TGG 0.461848 2:+613753 MsG0280006337.01.T01:five_prime_UTR
ATACGATTAATTATTTGGAA+AGG 0.485407 2:-613627 None:intergenic
TTAATTATTTGGAAAGGGAA+AGG 0.493230 2:-613621 None:intergenic
TGGTTATGTTATGTTTAGAA+GGG 0.507394 2:-613568 None:intergenic
AATGATAGTGAGAAAAGGAA+TGG 0.508510 2:+613444 None:intergenic
AAAGAAAGATTAATTGGAAG+CGG 0.547454 2:-613591 None:intergenic
GAAAGATTAATTGGAAGCGG+TGG 0.549759 2:-613588 None:intergenic
ACCTTTCACTATTTCAACGC+CGG 0.572715 2:-613714 None:intergenic
TCATTTCTCAGAGATCGATC+CGG 0.611454 2:+613695 MsG0280006337.01.T01:intron
CTGAGAAATGATAATAACAA+AGG 0.614352 2:-613683 None:intergenic
GTTGAAATAGTGAAAGGTGA+TGG 0.617483 2:+613719 MsG0280006337.01.T01:five_prime_UTR
AGAAATGATAATAACAAAGG+TGG 0.620056 2:-613680 None:intergenic
TCCGGCGTTGAAATAGTGAA+AGG 0.634495 2:+613713 MsG0280006337.01.T01:five_prime_UTR
AAAGGTGATGGAGAAGTACG+AGG 0.647067 2:+613731 MsG0280006337.01.T01:five_prime_UTR
ATATATAGAACGAGGTCACA+AGG 0.648680 2:+613835 MsG0280006337.01.T01:five_prime_UTR
ATTATGATTATGATGATGAG+AGG 0.663754 2:+613481 MsG0280006337.01.T01:five_prime_UTR
ATGTTTAGAAGGGAAGACAA+AGG 0.681358 2:-613558 None:intergenic
GATGAGAGGCGTGAAAGTGA+AGG 0.685369 2:+613495 MsG0280006337.01.T01:five_prime_UTR
TGCCATGAATATATAGAACG+AGG 0.698308 2:+613827 MsG0280006337.01.T01:five_prime_UTR
GGTGATGGAGAAGTACGAGG+TGG 0.698825 2:+613734 MsG0280006337.01.T01:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTAATAT+AGG + Chr2:614298-614317 MsG0280006337.01.T01:intron 0.0%
!! AATAAGATTAAACATTTGTT+GGG + Chr2:614907-614926 MsG0280006337.01.T01:intron 15.0%
!! TCTGACATTTATAAAAATAT+TGG - Chr2:615252-615271 None:intergenic 15.0%
!!! AATAATTTACATAAAGCATT+TGG - Chr2:614720-614739 None:intergenic 15.0%
!!! AATATTTTTATAAATGTCAG+AGG + Chr2:615251-615270 MsG0280006337.01.T01:intron 15.0%
!!! ATTTTTTTTATAGATTACCA+TGG - Chr2:614499-614518 None:intergenic 15.0%
!! AAATAATTCAGTTTCTTTCA+TGG + Chr2:614884-614903 MsG0280006337.01.T01:intron 20.0%
!! ATAAGAACGCATAAATTAAA+AGG - Chr2:614388-614407 None:intergenic 20.0%
!! ATACGATTAATTATTTGGAA+AGG - Chr2:613630-613649 None:intergenic 20.0%
!! ATTTAACTGACATAAGAATA+TGG + Chr2:615087-615106 MsG0280006337.01.T01:intron 20.0%
!! GAATAAGATTAAACATTTGT+TGG + Chr2:614906-614925 MsG0280006337.01.T01:intron 20.0%
!! GATCATTAACATAAAAAACA+CGG - Chr2:615328-615347 None:intergenic 20.0%
!! TACGATTAATTATTTGGAAA+GGG - Chr2:613629-613648 None:intergenic 20.0%
!! TTTATATCAATTCCTTTATG+TGG - Chr2:615215-615234 None:intergenic 20.0%
! AAAGAAAGATTAATTGGAAG+CGG - Chr2:613594-613613 None:intergenic 25.0%
! AGAAATGATAATAACAAAGG+TGG - Chr2:613683-613702 None:intergenic 25.0%
! AGAATGAGCATTATATTTGA+CGG + Chr2:615050-615069 MsG0280006337.01.T01:intron 25.0%
! ATTCTTATGTCAGTTAAATG+TGG - Chr2:615086-615105 None:intergenic 25.0%
! CTGAGAAATGATAATAACAA+AGG - Chr2:613686-613705 None:intergenic 25.0%
! GAACAGAAAGAAAGATTAAT+TGG - Chr2:613600-613619 None:intergenic 25.0%
! GTGTGATACGATTAATTATT+TGG - Chr2:613635-613654 None:intergenic 25.0%
! TGGTTATGTTATGTTTAGAA+GGG - Chr2:613571-613590 None:intergenic 25.0%
! TGTATGTATGTTTGAATTTG+CGG + Chr2:614123-614142 MsG0280006337.01.T01:intron 25.0%
! TGTCAAGAAAATTACATTGA+TGG - Chr2:615630-615649 None:intergenic 25.0%
! TTAATTATTTGGAAAGGGAA+AGG - Chr2:613624-613643 None:intergenic 25.0%
!! ATGGATGTTAGCAATTTTTA+TGG + Chr2:614974-614993 MsG0280006337.01.T01:intron 25.0%
!! ATGGTTTTCCTGAAATTTTT+GGG - Chr2:615611-615630 None:intergenic 25.0%
!! ATTATGATTATGATGATGAG+AGG + Chr2:613481-613500 MsG0280006337.01.T01:five_prime_UTR 25.0%
!! TGGATGTTAGCAATTTTTAT+GGG + Chr2:614975-614994 MsG0280006337.01.T01:intron 25.0%
!!! GTTATTCTAAGGTTTAGTTA+TGG + Chr2:614680-614699 MsG0280006337.01.T01:intron 25.0%
AAGATGATCCCAAAAATTTC+AGG + Chr2:615600-615619 MsG0280006337.01.T01:CDS 30.0%
ATAACTATACCAAGATGTGT+AGG - Chr2:614197-614216 None:intergenic 30.0%
GTGGTTATGTTATGTTTAGA+AGG - Chr2:613572-613591 None:intergenic 30.0%
TAAAAAACACGGAAAACTCA+AGG - Chr2:615317-615336 None:intergenic 30.0%
TAATATTATTCGCTTCAAGG+AGG + Chr2:614024-614043 MsG0280006337.01.T01:five_prime_UTR 30.0%
TACACATCTTGGTATAGTTA+TGG + Chr2:614196-614215 MsG0280006337.01.T01:five_prime_UTR 30.0%
TCCTAATATTATTCGCTTCA+AGG + Chr2:614021-614040 MsG0280006337.01.T01:five_prime_UTR 30.0%
TCCTTGAAGCGAATAATATT+AGG - Chr2:614025-614044 None:intergenic 30.0%
! AGATTAAACATTTGTTGGGA+TGG + Chr2:614911-614930 MsG0280006337.01.T01:intron 30.0%
! GATATAGGATCTGGAAATTT+TGG + Chr2:613762-613781 MsG0280006337.01.T01:five_prime_UTR 30.0%
! GATGGTTTTCCTGAAATTTT+TGG - Chr2:615612-615631 None:intergenic 30.0%
! TGATGTTAGTATTTTCTTCC+AGG + Chr2:614347-614366 MsG0280006337.01.T01:intron 30.0%
!!! GTTCTATTCTGTTTCTGTTT+TGG + Chr2:615451-615470 MsG0280006337.01.T01:intron 30.0%
!!! GTTCTTCTATTTTGTTTCTG+CGG + Chr2:615357-615376 MsG0280006337.01.T01:intron 30.0%
!!! TCTTATTTTGCCTCTATCTT+GGG + Chr2:614542-614561 MsG0280006337.01.T01:intron 30.0%
!!! TGAAATTTTTGGGATCATCT+TGG - Chr2:615601-615620 None:intergenic 30.0%
!!! TTCTTATTTTGCCTCTATCT+TGG + Chr2:614541-614560 MsG0280006337.01.T01:intron 30.0%
!!! TTGCGATTTTGGTTATTCTA+AGG + Chr2:614669-614688 MsG0280006337.01.T01:CDS 30.0%
ACTCTTTATGTAATGCTGGT+GGG + Chr2:615557-615576 MsG0280006337.01.T01:CDS 35.0%
AGATTGATGAGAATGTTGCA+AGG + Chr2:613969-613988 MsG0280006337.01.T01:intron 35.0%
AGTGACTCTTTATGTAATGC+TGG + Chr2:615553-615572 MsG0280006337.01.T01:CDS 35.0%
ATAGTTATGGAATATGCTGC+TGG + Chr2:614209-614228 MsG0280006337.01.T01:intron 35.0%
ATATATAGAACGAGGTCACA+AGG + Chr2:613835-613854 MsG0280006337.01.T01:five_prime_UTR 35.0%
ATGTATGTTTGAATTTGCGG+TGG + Chr2:614126-614145 MsG0280006337.01.T01:intron 35.0%
ATGTTTAGAAGGGAAGACAA+AGG - Chr2:613561-613580 None:intergenic 35.0%
CTTTCACGTAGAGAATATGA+CGG + Chr2:614855-614874 MsG0280006337.01.T01:intron 35.0%
GAAATATAACCCCAAGATAG+AGG - Chr2:614555-614574 None:intergenic 35.0%
GACCTCGTTCTATATATTCA+TGG - Chr2:613832-613851 None:intergenic 35.0%
GATTGATGAGAATGTTGCAA+GGG + Chr2:613970-613989 MsG0280006337.01.T01:intron 35.0%
GTTGAAATAGTGAAAGGTGA+TGG + Chr2:613719-613738 MsG0280006337.01.T01:five_prime_UTR 35.0%
TAAACACTTGAGCCACATAA+AGG + Chr2:615200-615219 MsG0280006337.01.T01:intron 35.0%
TGCCATGAATATATAGAACG+AGG + Chr2:613827-613846 MsG0280006337.01.T01:five_prime_UTR 35.0%
TGTATGTTTGAATTTGCGGT+GGG + Chr2:614127-614146 MsG0280006337.01.T01:intron 35.0%
TTGCAACATTCTCATCAATC+TGG - Chr2:613970-613989 None:intergenic 35.0%
TTTCACGTAGAGAATATGAC+GGG + Chr2:614856-614875 MsG0280006337.01.T01:intron 35.0%
! CATTTGAAGTATTTCGTCCT+TGG + Chr2:615277-615296 MsG0280006337.01.T01:intron 35.0%
!! AAGATTCGTTGATTTGTTGC+AGG + Chr2:614425-614444 MsG0280006337.01.T01:intron 35.0%
!! CAGATACTTTTGTTTGTCAG+AGG + Chr2:614941-614960 MsG0280006337.01.T01:intron 35.0%
!! TGTTTTTGTGTCCTTTCAGT+TGG + Chr2:615511-615530 MsG0280006337.01.T01:CDS 35.0%
!!! CTTATTTTGCCTCTATCTTG+GGG + Chr2:614543-614562 MsG0280006337.01.T01:intron 35.0%
ACCTTTCACTATTTCAACGC+CGG - Chr2:613717-613736 None:intergenic 40.0%
AGTTAGCTACTGTCATTCCA+TGG + Chr2:614479-614498 MsG0280006337.01.T01:CDS 40.0%
ATCTTCCAGCAGAGCAAATT+CGG - Chr2:614250-614269 None:intergenic 40.0%
ATTCATGGCAACAAGCTGTT+TGG - Chr2:613817-613836 None:intergenic 40.0%
CAAGCTGTTTGGTATCTTTC+TGG - Chr2:613806-613825 None:intergenic 40.0%
CCAGACTACACAATTCGTAA+TGG - Chr2:615122-615141 None:intergenic 40.0%
CCATTACGAATTGTGTAGTC+TGG + Chr2:615119-615138 MsG0280006337.01.T01:intron 40.0%
GAAAGATTAATTGGAAGCGG+TGG - Chr2:613591-613610 None:intergenic 40.0%
GACTCTTTATGTAATGCTGG+TGG + Chr2:615556-615575 MsG0280006337.01.T01:CDS 40.0%
GATCATCTTGGTCCTCAAAT+GGG - Chr2:615589-615608 None:intergenic 40.0%
GTGGTTAAGGATATAGGATC+TGG + Chr2:613753-613772 MsG0280006337.01.T01:five_prime_UTR 40.0%
TACGAGGTGGTTAAGGATAT+AGG + Chr2:613747-613766 MsG0280006337.01.T01:five_prime_UTR 40.0%
TAGGATGACGAAGACTTCTA+TGG - Chr2:614006-614025 None:intergenic 40.0%
TCAACGAATCTTTCAGAACG+TGG - Chr2:614417-614436 None:intergenic 40.0%
TCATTTCTCAGAGATCGATC+CGG + Chr2:613695-613714 MsG0280006337.01.T01:intron 40.0%
TGTCAGAGGAAACTCAGAAA+TGG + Chr2:614955-614974 MsG0280006337.01.T01:intron 40.0%
! AAATCGCAAATTTTGAGCCG+TGG - Chr2:614658-614677 None:intergenic 40.0%
! AATCGCAAATTTTGAGCCGT+GGG - Chr2:614657-614676 None:intergenic 40.0%
! CGGCTCAAAATTTGCGATTT+TGG + Chr2:614658-614677 MsG0280006337.01.T01:CDS 40.0%
! TGAAGTATTTCGTCCTTGGA+AGG + Chr2:615281-615300 MsG0280006337.01.T01:intron 40.0%
!! AGCACAATCATGCTGTTTCA+TGG - Chr2:615008-615027 None:intergenic 40.0%
!!! GTTTTGACTCCTACACATCT+TGG + Chr2:614185-614204 MsG0280006337.01.T01:five_prime_UTR 40.0%
AGGTTATGCAGCTATAAGCC+TGG - Chr2:614368-614387 None:intergenic 45.0%
AGTCTTCTCTGCTTCACTCT+AGG + Chr2:614787-614806 MsG0280006337.01.T01:intron 45.0%
CCATACATCTGCCAACTGAA+AGG - Chr2:615525-615544 None:intergenic 45.0%
CCTTTCAGTTGGCAGATGTA+TGG + Chr2:615522-615541 MsG0280006337.01.T01:CDS 45.0%
CTCGAGAACACCTTATTGGA+TGG + Chr2:614622-614641 MsG0280006337.01.T01:CDS 45.0%
GAAGCTCGAGAACACCTTAT+TGG + Chr2:614618-614637 MsG0280006337.01.T01:CDS 45.0%
GGATCATCTTGGTCCTCAAA+TGG - Chr2:615590-615609 None:intergenic 45.0%
GTTATGGAATATGCTGCTGG+TGG + Chr2:614212-614231 MsG0280006337.01.T01:intron 45.0%
TCTAGGCCTAAGTCTACAGT+GGG + Chr2:614804-614823 MsG0280006337.01.T01:intron 45.0%
TCTCTACGTGAAAGAACCTC+TGG - Chr2:614849-614868 None:intergenic 45.0%
TGGAAGATTCAGTGAAGACG+AGG + Chr2:614262-614281 MsG0280006337.01.T01:CDS 45.0%
TTATTCGCTTCAAGGAGGTC+TGG + Chr2:614029-614048 MsG0280006337.01.T01:intron 45.0%
! ACGTAGAGAATATGACGGGA+AGG + Chr2:614860-614879 MsG0280006337.01.T01:intron 45.0%
! AGGTAAGACTAGTCCTTCCA+AGG - Chr2:615297-615316 None:intergenic 45.0%
! ATCGCAAATTTTGAGCCGTG+GGG - Chr2:614656-614675 None:intergenic 45.0%
! TCACGCGATTTCAGTTTTGC+AGG + Chr2:614160-614179 MsG0280006337.01.T01:intron 45.0%
! TCCGGCGTTGAAATAGTGAA+AGG + Chr2:613713-613732 MsG0280006337.01.T01:five_prime_UTR 45.0%
! TTGGCAGATGTATGGTCTTG+TGG + Chr2:615530-615549 MsG0280006337.01.T01:CDS 45.0%
! TTTGACCGAATTTGCTCTGC+TGG + Chr2:614242-614261 MsG0280006337.01.T01:CDS 45.0%
!! AAAGGTGATGGAGAAGTACG+AGG + Chr2:613731-613750 MsG0280006337.01.T01:five_prime_UTR 45.0%
!! AAGAACCTCTGGTGCTATGT+AGG - Chr2:614838-614857 None:intergenic 45.0%
!! GGCAGATTTGCTGCAAAAGA+AGG - Chr2:614588-614607 None:intergenic 45.0%
CTCTAGGCCTAAGTCTACAG+TGG + Chr2:614803-614822 MsG0280006337.01.T01:intron 50.0%
TAACTCCTGAGATGAGCTGC+TGG - Chr2:614464-614483 None:intergenic 50.0%
TCTCGAGCTTCAAGTCTCGA+TGG - Chr2:614609-614628 None:intergenic 50.0%
TTCTTCCAGCAGCTCATCTC+AGG + Chr2:614456-614475 MsG0280006337.01.T01:CDS 50.0%
! AAATTTTGAGCCGTGGGGCA+GGG - Chr2:614651-614670 None:intergenic 50.0%
! CGCGATTTCAGTTTTGCAGG+TGG + Chr2:614163-614182 MsG0280006337.01.T01:intron 50.0%
! GATGAGAGGCGTGAAAGTGA+AGG + Chr2:613495-613514 MsG0280006337.01.T01:five_prime_UTR 50.0%
! GGAGAAGTACGAGGTGGTTA+AGG + Chr2:613740-613759 MsG0280006337.01.T01:five_prime_UTR 50.0%
GGGGTTCCCACTGTAGACTT+AGG - Chr2:614813-614832 None:intergenic 55.0%
! CAAATTTTGAGCCGTGGGGC+AGG - Chr2:614652-614671 None:intergenic 55.0%
! GGTGGGAGCATACCCATTTG+AGG + Chr2:615574-615593 MsG0280006337.01.T01:CDS 55.0%
!! ACCTCTGGTGCTATGTAGGC+TGG - Chr2:614834-614853 None:intergenic 55.0%
!! CCTCTGGTGCTATGTAGGCT+GGG - Chr2:614833-614852 None:intergenic 55.0%
!! CTCTGGTGCTATGTAGGCTG+GGG - Chr2:614832-614851 None:intergenic 55.0%
!! GGTGATGGAGAAGTACGAGG+TGG + Chr2:613734-613753 MsG0280006337.01.T01:five_prime_UTR 55.0%
CCCAGCCTACATAGCACCAG+AGG + Chr2:614830-614849 MsG0280006337.01.T01:intron 60.0%
GGCAGGGCTGCCATCCAATA+AGG - Chr2:614635-614654 None:intergenic 60.0%
TGGATGGCAGCCCTGCCCCA+CGG + Chr2:614638-614657 MsG0280006337.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 613450 615658 613450 ID=MsG0280006337.01;Name=MsG0280006337.01
Chr2 mRNA 613468 615658 613468 ID=MsG0280006337.01.T01;Parent=MsG0280006337.01;Name=MsG0280006337.01.T01;_AED=0.49;_eAED=0.52;_QI=382|0.66|0.71|1|0|0|7|0|128
Chr2 exon 613468 613583 613468 ID=MsG0280006337.01.T01:exon:676;Parent=MsG0280006337.01.T01
Chr2 five_prime_UTR 613468 613583 613468 ID=MsG0280006337.01.T01:five_prime_utr;Parent=MsG0280006337.01.T01
Chr2 five_prime_UTR 613706 613856 613706 ID=MsG0280006337.01.T01:five_prime_utr;Parent=MsG0280006337.01.T01
Chr2 five_prime_UTR 613971 614045 613971 ID=MsG0280006337.01.T01:five_prime_utr;Parent=MsG0280006337.01.T01
Chr2 five_prime_UTR 614182 614221 614182 ID=MsG0280006337.01.T01:five_prime_utr;Parent=MsG0280006337.01.T01
Chr2 CDS 614222 614283 614222 ID=MsG0280006337.01.T01:cds;Parent=MsG0280006337.01.T01
Chr2 CDS 614447 614500 614447 ID=MsG0280006337.01.T01:cds;Parent=MsG0280006337.01.T01
Chr2 CDS 614579 614690 614579 ID=MsG0280006337.01.T01:cds;Parent=MsG0280006337.01.T01
Chr2 CDS 615500 615658 615500 ID=MsG0280006337.01.T01:cds;Parent=MsG0280006337.01.T01
Chr2 mRNA 613450 615658 613450 ID=MsG0280006337.01.T02;Parent=MsG0280006337.01;Name=MsG0280006337.01.T02;_AED=0.49;_eAED=0.52;_QI=367|0.66|0.71|1|0|0|7|0|128
Chr2 exon 613450 613550 613450 ID=MsG0280006337.01.T02:exon:683;Parent=MsG0280006337.01.T02
Chr2 five_prime_UTR 613450 613550 613450 ID=MsG0280006337.01.T02:five_prime_utr;Parent=MsG0280006337.01.T02
Chr2 five_prime_UTR 613706 613856 613706 ID=MsG0280006337.01.T02:five_prime_utr;Parent=MsG0280006337.01.T02
Chr2 five_prime_UTR 613971 614045 613971 ID=MsG0280006337.01.T02:five_prime_utr;Parent=MsG0280006337.01.T02
Chr2 five_prime_UTR 614182 614221 614182 ID=MsG0280006337.01.T02:five_prime_utr;Parent=MsG0280006337.01.T02
Chr2 CDS 614222 614283 614222 ID=MsG0280006337.01.T02:cds;Parent=MsG0280006337.01.T02
Chr2 CDS 614447 614500 614447 ID=MsG0280006337.01.T02:cds;Parent=MsG0280006337.01.T02
Chr2 CDS 614579 614690 614579 ID=MsG0280006337.01.T02:cds;Parent=MsG0280006337.01.T02
Chr2 CDS 615500 615658 615500 ID=MsG0280006337.01.T02:cds;Parent=MsG0280006337.01.T02
Chr2 mRNA 613453 615658 613453 ID=MsG0280006337.01.T03;Parent=MsG0280006337.01;Name=MsG0280006337.01.T03;_AED=0.49;_eAED=0.52;_QI=519|0.6|0.66|1|0|0|6|0|128
Chr2 exon 613453 613856 613453 ID=MsG0280006337.01.T03:exon:684;Parent=MsG0280006337.01.T03
Chr2 five_prime_UTR 613453 613856 613453 ID=MsG0280006337.01.T03:five_prime_utr;Parent=MsG0280006337.01.T03
Chr2 five_prime_UTR 613971 614045 613971 ID=MsG0280006337.01.T03:five_prime_utr;Parent=MsG0280006337.01.T03
Chr2 five_prime_UTR 614182 614221 614182 ID=MsG0280006337.01.T03:five_prime_utr;Parent=MsG0280006337.01.T03
Chr2 CDS 614222 614283 614222 ID=MsG0280006337.01.T03:cds;Parent=MsG0280006337.01.T03
Chr2 CDS 614447 614500 614447 ID=MsG0280006337.01.T03:cds;Parent=MsG0280006337.01.T03
Chr2 CDS 614579 614690 614579 ID=MsG0280006337.01.T03:cds;Parent=MsG0280006337.01.T03
Chr2 CDS 615500 615658 615500 ID=MsG0280006337.01.T03:cds;Parent=MsG0280006337.01.T03
Gene Sequence

>MsG0280006337.01.T03

ATGCTGCTGGTGGAGAGCTCTTTGACCGAATTTGCTCTGCTGGAAGATTCAGTGAAGACGAGGCTCGATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATGTATTTTCCTTCTTTTGCAGCAAATCTGCCATCGAGACTTGAAGCTCGAGAACACCTTATTGGATGGCAGCCCTGCCCCACGGCTCAAAATTTGCGATTTTGGTTATTCTAAGTTCTCTTATTCTGTTTTTGTGTCCTTTCAGTTGGCAGATGTATGGTCTTGTGGAGTGACTCTTTATGTAATGCTGGTGGGAGCATACCCATTTGAGGACCAAGATGATCCCAAAAATTTCAGGAAAACCATCAATGTAATTTTCTTGACATCATCTTAA

>MsG0280006337.01.T01

ATGCTGCTGGTGGAGAGCTCTTTGACCGAATTTGCTCTGCTGGAAGATTCAGTGAAGACGAGGCTCGATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATGTATTTTCCTTCTTTTGCAGCAAATCTGCCATCGAGACTTGAAGCTCGAGAACACCTTATTGGATGGCAGCCCTGCCCCACGGCTCAAAATTTGCGATTTTGGTTATTCTAAGTTCTCTTATTCTGTTTTTGTGTCCTTTCAGTTGGCAGATGTATGGTCTTGTGGAGTGACTCTTTATGTAATGCTGGTGGGAGCATACCCATTTGAGGACCAAGATGATCCCAAAAATTTCAGGAAAACCATCAATGTAATTTTCTTGACATCATCTTAA

>MsG0280006337.01.T02

ATGCTGCTGGTGGAGAGCTCTTTGACCGAATTTGCTCTGCTGGAAGATTCAGTGAAGACGAGGCTCGATATTTCTTCCAGCAGCTCATCTCAGGAGTTAGCTACTGTCATTCCATGTATTTTCCTTCTTTTGCAGCAAATCTGCCATCGAGACTTGAAGCTCGAGAACACCTTATTGGATGGCAGCCCTGCCCCACGGCTCAAAATTTGCGATTTTGGTTATTCTAAGTTCTCTTATTCTGTTTTTGTGTCCTTTCAGTTGGCAGATGTATGGTCTTGTGGAGTGACTCTTTATGTAATGCTGGTGGGAGCATACCCATTTGAGGACCAAGATGATCCCAAAAATTTCAGGAAAACCATCAATGTAATTTTCTTGACATCATCTTAA

Protein sequence

>MsG0280006337.01.T03

MLLVESSLTEFALLEDSVKTRLDISSSSSSQELATVIPCIFLLLQQICHRDLKLENTLLDGSPAPRLKICDFGYSKFSYSVFVSFQLADVWSCGVTLYVMLVGAYPFEDQDDPKNFRKTINVIFLTSS*

>MsG0280006337.01.T01

MLLVESSLTEFALLEDSVKTRLDISSSSSSQELATVIPCIFLLLQQICHRDLKLENTLLDGSPAPRLKICDFGYSKFSYSVFVSFQLADVWSCGVTLYVMLVGAYPFEDQDDPKNFRKTINVIFLTSS*

>MsG0280006337.01.T02

MLLVESSLTEFALLEDSVKTRLDISSSSSSQELATVIPCIFLLLQQICHRDLKLENTLLDGSPAPRLKICDFGYSKFSYSVFVSFQLADVWSCGVTLYVMLVGAYPFEDQDDPKNFRKTINVIFLTSS*