AlfalfaGEDB | MsG0480021346.01

M. sativa cultivar ZhongmuNo.1 / MsG0480021346.01

KEGG: K14488
GO: GO:0009733
PFAM: PF02519

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021346.01.T01	XP_003607106.1	97.531	81	2	0	1	81	11	91	1.18E-51	166

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021346.01.T01	P33080	75.949	79	19	0	3	81	12	90	8.55E-42	134

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021346.01.T01	G7JL28	97.531	81	2	0	1	81	11	91	5.62e-52	166

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047910.01	MsG0480021346.01	0.869970	2.075877e-66	7.939679e-63
MsG0080047945.01	MsG0480021346.01	0.847290	1.269611e-59	2.245739e-56
MsG0080047955.01	MsG0480021346.01	0.831415	1.691221e-55	1.833962e-52
MsG0080047956.01	MsG0480021346.01	0.843590	1.275865e-58	2.005939e-55
MsG0080048059.01	MsG0480021346.01	0.802760	4.814556e-49	2.377889e-46
MsG0080048068.01	MsG0480021346.01	0.800851	1.187319e-48	5.586825e-46
MsG0080048611.01	MsG0480021346.01	0.877529	5.840718e-69	2.946461e-65
MsG0080048777.01	MsG0480021346.01	0.811633	6.348799e-51	3.950038e-48
MsG0080048780.01	MsG0480021346.01	0.809856	1.538484e-50	9.133563e-48
MsG0080048917.01	MsG0480021346.01	0.867886	9.829949e-66	3.486604e-62

Showing 1 to 10 of 349 entries

Previous1 2 3 4 5…35Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021346.01.T01	MTR_4g072300	97.531	81	2	1	81	11	91	1.43e-55	166
MsG0480021346.01.T01	MTR_4g072240	96.250	80	3	2	81	12	91	2.48e-54	163
MsG0480021346.01.T01	MTR_4g072220	87.654	81	10	1	81	11	91	5.25e-51	155
MsG0480021346.01.T01	MTR_4g072890	85.185	81	12	1	81	11	91	3.06e-49	150
MsG0480021346.01.T01	MTR_4g072870	86.076	79	11	3	81	13	91	1.37e-47	146
MsG0480021346.01.T01	MTR_4g072260	81.481	81	15	1	81	11	91	6.90e-47	144
MsG0480021346.01.T01	MTR_4g072330	77.922	77	17	5	81	12	88	6.72e-43	134
MsG0480021346.01.T01	MTR_3g084150	74.684	79	20	3	81	12	90	3.14e-41	130
MsG0480021346.01.T01	MTR_3g084180	74.684	79	20	3	81	12	90	3.14e-41	130
MsG0480021346.01.T01	MTR_4g072570	72.152	79	22	3	81	12	90	1.12e-40	129

Showing 1 to 10 of 125 entries

Previous1 2 3 4 5…13Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021346.01.T01	AT4G38840	72.059	68	18	1	15	81	32	99	5.58e-33	109
MsG0480021346.01.T01	AT5G18080	62.667	75	27	1	7	80	15	89	3.98e-32	107
MsG0480021346.01.T01	AT5G18020	64.103	78	23	2	3	79	15	88	1.94e-31	105
MsG0480021346.01.T01	AT5G18060	68.182	66	20	1	17	81	25	90	3.16e-31	105
MsG0480021346.01.T01	AT5G18050	63.158	76	24	2	6	80	17	89	9.68e-31	103
MsG0480021346.01.T01	AT2G21210	56.250	80	33	1	4	81	16	95	2.32e-30	103
MsG0480021346.01.T01	AT5G18010	57.895	76	31	1	7	81	15	90	2.60e-30	102
MsG0480021346.01.T01	AT5G18030	65.672	67	22	1	16	81	22	88	3.26e-30	102
MsG0480021346.01.T01	AT4G38825	60.000	75	29	1	8	81	15	89	3.66e-30	102
MsG0480021346.01.T01	AT2G21210	56.250	80	33	1	4	81	83	162	1.46e-29	103

Showing 1 to 10 of 61 entries

Previous1 2 3 4 5 6 7Next

Find 22 sgRNAs with CRISPR-Local

Find 22 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGGATTCGAAGTCCCAAA+AGG	0.563694	4:+56907936	MsG0480021346.01.T01:CDS
AATCAATCTGAAGAAGAATA+TGG	0.345307	4:+56908047	MsG0480021346.01.T01:CDS
ACGTTGGAGATCAAATGAGG+CGG	0.704375	4:+56907973	MsG0480021346.01.T01:CDS
AGGTTGGTTCAAGTATGATA+CGG	0.535670	4:-56908006	None:intergenic
ATATGGATATGATCATCCAA+CGG	0.628845	4:+56908064	MsG0480021346.01.T01:CDS
CTCAACACAAGCATCTAGCA+AGG	0.576789	4:+56907917	MsG0480021346.01.T01:CDS
CTCAATTCATACGAGAAGTA+AGG	0.442942	4:-56908127	None:intergenic
CTTGCTAGATGCTTGTGTTG+AGG	0.618806	4:-56907916	None:intergenic
GCTTGTGTTGAGGAAAATGA+TGG	0.641773	4:-56907906	None:intergenic
GGAATTGTAAGACCACCCGT+TGG	0.684855	4:-56908080	None:intergenic

Showing 1 to 10 of 22 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATATGGATATGATCATCCAA+CGG	+	Chr4:56908064-56908083	MsG0480021346.01.T01:CDS	30.0%
GTAATTCTTGAAATGAAGGT+TGG	-	Chr4:56908025-56908044	None:intergenic	30.0%
TATGGATATGATCATCCAAC+GGG	+	Chr4:56908065-56908084	MsG0480021346.01.T01:CDS	35.0%
GCTTGTGTTGAGGAAAATGA+TGG	-	Chr4:56907909-56907928	None:intergenic	40.0%
TCAACACAAGCATCTAGCAA+GGG	+	Chr4:56907918-56907937	MsG0480021346.01.T01:CDS	40.0%
TCTACGTTGGAGATCAAATG+AGG	+	Chr4:56907970-56907989	MsG0480021346.01.T01:CDS	40.0%
AAGGGATTCGAAGTCCCAAA+AGG	+	Chr4:56907936-56907955	MsG0480021346.01.T01:CDS	45.0%
ACGTTGGAGATCAAATGAGG+CGG	+	Chr4:56907973-56907992	MsG0480021346.01.T01:CDS	45.0%
CTCAACACAAGCATCTAGCA+AGG	+	Chr4:56907917-56907936	MsG0480021346.01.T01:CDS	45.0%
CTTGCTAGATGCTTGTGTTG+AGG	-	Chr4:56907919-56907938	None:intergenic	45.0%

Showing 1 to 10 of 22 entries

Previous1 2 3Next

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	56907903	56908148	56907903	ID=MsG0480021346.01;Name=MsG0480021346.01
Chr4	mRNA	56907903	56908148	56907903	ID=MsG0480021346.01.T01;Parent=MsG0480021346.01;Name=MsG0480021346.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|81
Chr4	exon	56907903	56908148	56907903	ID=MsG0480021346.01.T01:exon:7122;Parent=MsG0480021346.01.T01
Chr4	CDS	56907903	56908148	56907903	ID=MsG0480021346.01.T01:cds;Parent=MsG0480021346.01.T01

Gene Sequence	>MsG0480021346.01.T01 ATGCCATCATTTTCCTCAACACAAGCATCTAGCAAGGGATTCGAAGTCCCAAAAGGCTATCTTGCAGTCTACGTTGGAGATCAAATGAGGCGGTTTGTGATTCCCGTATCATACTTGAACCAACCTTCATTTCAAGAATTACTAAATCAATCTGAAGAAGAATATGGATATGATCATCCAACGGGTGGTCTTACAATTCCGTGCAGTGAGGATGAATTCCAAAACCTTACTTCTCGTATGAATTGA
Protein sequence	>MsG0480021346.01.T01 MPSFSSTQASSKGFEVPKGYLAVYVGDQMRRFVIPVSYLNQPSFQELLNQSEEEYGYDHPTGGLTIPCSEDEFQNLTSRMN*