AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040377.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040377.01.T01 MTR_1g101180 79.048 105 22 0 1 105 215 319 4.22e-55 177
MsG0780040377.01.T01 MTR_3g014480 80.952 105 20 0 1 105 249 353 2.56e-48 160
MsG0780040377.01.T01 MTR_7g069450 78.095 105 23 0 1 105 465 569 2.84e-47 162
MsG0780040377.01.T01 MTR_3g032550 77.174 92 21 0 1 92 325 416 6.41e-43 148
MsG0780040377.01.T01 MTR_4g088830 80.435 92 18 0 14 105 20 111 1.25e-42 138
MsG0780040377.01.T01 MTR_8g040220 62.857 105 38 1 1 105 119 222 6.66e-40 135
MsG0780040377.01.T01 MTR_2g067910 66.346 104 34 1 2 105 1 103 1.09e-36 124
MsG0780040377.01.T01 MTR_8g465250 84.127 63 10 0 1 63 1 63 1.65e-34 118
MsG0780040377.01.T01 MTR_2g101530 57.843 102 42 1 2 103 1 101 7.60e-34 117
MsG0780040377.01.T01 MTR_1g051465 53.398 103 47 1 1 103 248 349 7.69e-32 117
MsG0780040377.01.T01 MTR_1g035110 52.427 103 48 1 1 103 297 398 6.32e-31 115
MsG0780040377.01.T01 MTR_0325s0020 79.365 63 13 0 1 63 145 207 7.88e-31 117
MsG0780040377.01.T01 MTR_1g024975 51.546 97 46 1 2 98 1 96 1.54e-30 107
MsG0780040377.01.T01 MTR_5g018790 53.398 103 47 1 1 103 607 708 1.75e-30 117
MsG0780040377.01.T01 MTR_7g006230 52.427 103 48 1 1 103 389 490 3.97e-30 115
MsG0780040377.01.T01 MTR_8g463980 51.456 103 49 1 1 103 391 492 9.29e-30 114
MsG0780040377.01.T01 MTR_8g463980 48.246 114 54 2 2 111 1 113 1.01e-28 111
MsG0780040377.01.T01 MTR_4g065057 49.515 103 51 1 1 103 205 306 1.13e-29 111
MsG0780040377.01.T01 MTR_2g067680 50.485 103 50 1 1 103 177 278 4.33e-29 108
MsG0780040377.01.T01 MTR_5g062340 49.515 103 51 1 1 103 322 423 4.61e-29 111
MsG0780040377.01.T01 MTR_8g020437 50.485 103 50 1 1 103 142 243 9.12e-29 107
MsG0780040377.01.T01 MTR_7g029645 50.485 103 50 1 1 103 388 489 2.10e-28 110
MsG0780040377.01.T01 MTR_1g016820 48.980 98 49 1 1 98 257 353 2.29e-27 105
MsG0780040377.01.T01 MTR_2g096070 49.515 103 51 1 1 103 709 810 3.46e-27 107
MsG0780040377.01.T01 MTR_4g113170 71.930 57 16 0 1 57 617 673 1.17e-23 97.4
MsG0780040377.01.T01 MTR_4g019660 54.667 75 33 1 16 90 52 125 1.45e-21 85.5
MsG0780040377.01.T01 MTR_8g409330 47.253 91 47 1 13 103 129 218 2.60e-21 87.4
MsG0780040377.01.T01 MTR_4g124655 48.235 85 43 1 19 103 64 147 4.05e-21 85.1
MsG0780040377.01.T01 MTR_2g461120 43.750 80 42 1 1 80 133 209 3.06e-19 81.6
MsG0780040377.01.T01 MTR_3g005107 46.341 82 43 1 22 103 29 109 1.15e-18 77.4
MsG0780040377.01.T01 MTR_3g437080 87.179 39 5 0 1 39 134 172 1.83e-18 78.6
MsG0780040377.01.T01 MTR_4g033145 46.341 82 43 1 22 103 4 84 2.81e-17 73.2
MsG0780040377.01.T01 MTR_0794s0010 45.122 82 44 1 22 103 4 84 1.49e-16 71.2
MsG0780040377.01.T01 MTR_4g132765 47.778 90 40 3 1 90 924 1006 4.97e-16 75.5
MsG0780040377.01.T01 MTR_7g090750 77.273 44 10 0 128 171 8 51 1.14e-15 73.9
MsG0780040377.01.T01 MTR_6g084230 36.800 125 71 4 1 124 131 248 2.49e-15 72.4
MsG0780040377.01.T01 MTR_8g468040 43.689 103 52 3 1 102 451 548 3.30e-15 72.8
MsG0780040377.01.T01 MTR_6g035400 46.667 90 41 3 1 90 345 427 3.35e-15 72.8
MsG0780040377.01.T01 MTR_7g024793 70.455 44 13 0 1 44 181 224 4.44e-15 70.9
MsG0780040377.01.T01 MTR_0116s0070 43.421 76 42 1 28 103 3 77 4.65e-15 67.4
MsG0780040377.01.T01 MTR_8g446690 44.156 77 38 2 1 76 133 205 4.71e-15 71.2
MsG0780040377.01.T01 MTR_1g064700 44.898 98 45 4 1 98 94 182 1.02e-14 68.9
MsG0780040377.01.T01 MTR_8g017510 46.053 76 37 1 1 76 131 202 1.36e-14 69.3
MsG0780040377.01.T01 MTR_7g056013 45.556 90 42 3 1 90 399 481 2.09e-14 70.5
MsG0780040377.01.T01 MTR_8g095590 68.889 45 14 0 127 171 11 55 2.13e-14 70.5
MsG0780040377.01.T01 MTR_2g061890 41.748 103 55 2 1 102 275 373 2.15e-14 70.1
MsG0780040377.01.T01 MTR_4g048540 69.231 39 12 0 1 39 379 417 2.19e-14 70.5
MsG0780040377.01.T01 MTR_0227s0010 55.738 61 20 1 111 171 2 55 2.56e-14 69.7
MsG0780040377.01.T01 MTR_5g413325 45.333 75 40 1 29 103 453 526 8.59e-14 68.9
MsG0780040377.01.T01 MTR_1g057190 56.604 53 23 0 16 68 72 124 1.37e-13 64.7
MsG0780040377.01.T01 MTR_6g089230 80.556 36 7 0 1 36 191 226 3.51e-13 65.5
MsG0780040377.01.T01 MTR_7g004990 44.444 90 43 3 1 90 43 125 1.64e-12 62.0
MsG0780040377.01.T01 MTR_5g038430 54.098 61 21 1 111 171 83 136 2.49e-12 64.7
MsG0780040377.01.T01 MTR_2g461930 66.667 39 13 0 20 58 248 286 3.24e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 44 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCAGAACATCTTCAAATT+TGG 0.073811 7:-76732410 None:intergenic
TCCAGAACATCTTCAAATTT+GGG 0.257027 7:-76732409 None:intergenic
CCCCAAATTTGAAGATGTTC+TGG 0.274844 7:+76732408 MsG0780040377.01.T01:CDS
CTTGTGCTTGTAGTTCTCTT+AGG 0.308244 7:+76736745 MsG0780040377.01.T01:intron
GAAAGAAGGACAAAATGATT+TGG 0.319688 7:-76732172 None:intergenic
ATTAGATTGTCTTGATTTGT+TGG 0.320475 7:-76732355 None:intergenic
AAAGAAGGACAAAATGATTT+GGG 0.321822 7:-76732171 None:intergenic
ATCTTGACTGTCCCTCTTGT+TGG 0.343502 7:-76736781 None:intergenic
GTCCTTCTTTCTTTAAAAGA+TGG 0.380073 7:+76732184 MsG0780040377.01.T01:CDS
TCTGTGGATGCTGGAGGTAG+TGG 0.400626 7:-76732211 None:intergenic
TTTCTCCACTCTGTGGATGC+TGG 0.422203 7:-76732220 None:intergenic
TGAAAATCAAAGACCTGGTT+AGG 0.423180 7:+76736886 MsG0780040377.01.T01:CDS
GATCCGCCACTGCGTGGGAG+TGG 0.456866 7:-76736954 None:intergenic
GAACGAAGAGGCGGCAACAT+GGG 0.472531 7:+76732249 MsG0780040377.01.T01:CDS
AACATGGGAGGATAAATTCT+TGG 0.478041 7:+76732264 MsG0780040377.01.T01:CDS
CGATCGTTTCCGAACACTCA+TGG 0.509783 7:+76732294 MsG0780040377.01.T01:CDS
AAAAGCAACATGATTTGCCT+TGG 0.512552 7:+76732142 None:intergenic
GCTCAATGTCCATGAGTGTT+CGG 0.513572 7:-76732303 None:intergenic
CTAAACGGTGGAGGTATATG+TGG 0.544983 7:+76736922 MsG0780040377.01.T01:CDS
CCAGAACATCTTCAAATTTG+GGG 0.563667 7:-76732408 None:intergenic
CATTGAGCTCAAAGATAGAC+CGG 0.571356 7:+76732318 MsG0780040377.01.T01:CDS
CTCAAGATCCGCCACTGCGT+GGG 0.573335 7:-76736959 None:intergenic
CTGTGGATGCTGGAGGTAGT+GGG 0.573757 7:-76732210 None:intergenic
CTGAGACTATTTCCAACAAG+AGG 0.583715 7:+76736769 MsG0780040377.01.T01:CDS
ATGCCGTCAGTGACATTGCA+TGG 0.585348 7:-76736852 None:intergenic
CTCCACTCTGTGGATGCTGG+AGG 0.588151 7:-76732217 None:intergenic
AATTATGTTTGATGACACTC+CGG 0.588195 7:+76732375 MsG0780040377.01.T01:CDS
GGAACGAAGAGGCGGCAACA+TGG 0.589306 7:+76732248 MsG0780040377.01.T01:CDS
GTTCCACTCCCACGCAGTGG+CGG 0.595372 7:+76736951 MsG0780040377.01.T01:CDS
GTCAAGATGATGATACTGAT+CGG 0.604281 7:+76736796 MsG0780040377.01.T01:CDS
ACAAAATACTAGTCCTAACC+AGG 0.607124 7:-76736899 None:intergenic
CGAAGAGGCGGCAACATGGG+AGG 0.612176 7:+76732252 MsG0780040377.01.T01:CDS
ACTCAAGATCCGCCACTGCG+TGG 0.615987 7:-76736960 None:intergenic
GGATCAGTGATGATACTGAT+CGG 0.619107 7:+76736817 MsG0780040377.01.T01:CDS
TTACCATGCAATGTCACTGA+CGG 0.623357 7:+76736849 MsG0780040377.01.T01:CDS
AAATCACAGGAACGAAGAGG+CGG 0.623787 7:+76732240 MsG0780040377.01.T01:CDS
AATGATTTGGGATTAGACCA+AGG 0.639528 7:-76732159 None:intergenic
ACACTTGAAAATCAAAGACC+TGG 0.656744 7:+76736881 MsG0780040377.01.T01:CDS
CCTGTGATTTCTCCACTCTG+TGG 0.662381 7:-76732227 None:intergenic
CCACAGAGTGGAGAAATCAC+AGG 0.667298 7:+76732227 MsG0780040377.01.T01:CDS
TGAGACTATTTCCAACAAGA+GGG 0.671459 7:+76736770 MsG0780040377.01.T01:CDS
GAGAAATCACAGGAACGAAG+AGG 0.673454 7:+76732237 MsG0780040377.01.T01:CDS
TACCTCCAGCATCCACAGAG+TGG 0.674487 7:+76732215 MsG0780040377.01.T01:CDS
TATGTTCCACTCCCACGCAG+TGG 0.679751 7:+76736948 MsG0780040377.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCCATAATAATAATAATA+AGG - Chr7:76736356-76736375 None:intergenic 10.0%
!! ATATACATATAAATAGTTAA+AGG - Chr7:76732574-76732593 None:intergenic 10.0%
!! TTTATAGTTTATCAATTATT+CGG - Chr7:76732728-76732747 None:intergenic 10.0%
!! TTTCCTTATTATTATTATTA+TGG + Chr7:76736350-76736369 MsG0780040377.01.T01:intron 10.0%
!! AAAGAACTTAATAATTGAAT+CGG + Chr7:76735704-76735723 MsG0780040377.01.T01:intron 15.0%
!! AATAACTGTGATTTATTATT+AGG + Chr7:76736457-76736476 MsG0780040377.01.T01:intron 15.0%
!! AATTTCCAAGTAAAATATTA+TGG + Chr7:76735037-76735056 MsG0780040377.01.T01:intron 15.0%
!! ATAACTATGATTTATTGTAT+AGG + Chr7:76736379-76736398 MsG0780040377.01.T01:intron 15.0%
!! ATAACTGTGATTTATTATTA+GGG + Chr7:76736458-76736477 MsG0780040377.01.T01:intron 15.0%
!! ATATATCTAAAAAAATACGT+CGG - Chr7:76732514-76732533 None:intergenic 15.0%
!! ATATGGATAGTATTATTATT+AGG + Chr7:76736159-76736178 MsG0780040377.01.T01:intron 15.0%
!! ATCACTATGATTTATTATTA+GGG + Chr7:76736530-76736549 MsG0780040377.01.T01:intron 15.0%
!! TATGGATAGTATTATTATTA+GGG + Chr7:76736160-76736179 MsG0780040377.01.T01:intron 15.0%
!!! AATCTATGTTTTTCATTAAA+AGG + Chr7:76733108-76733127 MsG0780040377.01.T01:intron 15.0%
!!! ATCTATGTTTTTCATTAAAA+GGG + Chr7:76733109-76733128 MsG0780040377.01.T01:intron 15.0%
!!! ATTTCTTGATTTTCAATATA+TGG - Chr7:76734724-76734743 None:intergenic 15.0%
!!! TTTGTTTTTAAACAATAACT+TGG - Chr7:76735938-76735957 None:intergenic 15.0%
!! AAACTAAGAATAAAACTAAG+AGG + Chr7:76734948-76734967 MsG0780040377.01.T01:intron 20.0%
!! AATGTAATGACCAATTTATT+GGG + Chr7:76732534-76732553 MsG0780040377.01.T01:intron 20.0%
!! ATCATTCTAAGTTCAAAATA+TGG + Chr7:76734219-76734238 MsG0780040377.01.T01:intron 20.0%
!! ATTTCGACAAACATAAAATA+CGG + Chr7:76735973-76735992 MsG0780040377.01.T01:intron 20.0%
!! GATCACTATGATTTATTATT+AGG + Chr7:76736529-76736548 MsG0780040377.01.T01:intron 20.0%
!! TAAACAATATTCCAACATAT+TGG - Chr7:76733062-76733081 None:intergenic 20.0%
!! TAATGTAATGACCAATTTAT+TGG + Chr7:76732533-76732552 MsG0780040377.01.T01:intron 20.0%
!! TAGAAATAACAATATCACTT+TGG - Chr7:76734425-76734444 None:intergenic 20.0%
!! TATAGAGTAAGAATAATAGA+AGG - Chr7:76734889-76734908 None:intergenic 20.0%
!! TTATTATTCAATTGTGCAAA+TGG - Chr7:76736442-76736461 None:intergenic 20.0%
!!! AGATTGTCTAAAATAAAACT+TGG - Chr7:76733093-76733112 None:intergenic 20.0%
!!! TTCTGCCATTTTTTTTTTTT+TGG - Chr7:76736010-76736029 None:intergenic 20.0%
! AAAGAAGGACAAAATGATTT+GGG - Chr7:76732174-76732193 None:intergenic 25.0%
! AATCAAGAACTTAATGCTTT+CGG - Chr7:76734540-76734559 None:intergenic 25.0%
! ATAATCATGTACCAATATGT+TGG + Chr7:76733048-76733067 MsG0780040377.01.T01:intron 25.0%
! ATTTATGTTATGCTTGATCA+AGG - Chr7:76734328-76734347 None:intergenic 25.0%
! GAAATTCATCTATAAAAGCA+AGG - Chr7:76735023-76735042 None:intergenic 25.0%
! GCTCTCCAAAAAAAAAAAAA+TGG + Chr7:76736002-76736021 MsG0780040377.01.T01:intron 25.0%
! GTTACATAGTAGTAAGATAT+AGG - Chr7:76734920-76734939 None:intergenic 25.0%
! TACATTACAGTAATTACTTG+TGG - Chr7:76735788-76735807 None:intergenic 25.0%
! TGAAAATGATGTATCATGTA+TGG - Chr7:76735635-76735654 None:intergenic 25.0%
! TGATACTTAAAGCGTAAAAT+AGG + Chr7:76735402-76735421 MsG0780040377.01.T01:intron 25.0%
! TGTTTAAAAACAAAACCTAG+TGG + Chr7:76735944-76735963 MsG0780040377.01.T01:intron 25.0%
! TTTCATATCACCCAATAAAT+TGG - Chr7:76732547-76732566 None:intergenic 25.0%
! TTTGTACCTGTAATTTCAAA+TGG - Chr7:76732809-76732828 None:intergenic 25.0%
!! AAGACATAGTTTCTTTTTGT+GGG - Chr7:76736224-76736243 None:intergenic 25.0%
!! ACTTTTGTATCATTCTGATA+TGG + Chr7:76733887-76733906 MsG0780040377.01.T01:intron 25.0%
!! CTTTGCCATAATATTTTACT+TGG - Chr7:76735045-76735064 None:intergenic 25.0%
!!! AACCATCTTTTAAAGAAAGA+AGG - Chr7:76732189-76732208 None:intergenic 25.0%
!!! ATTAGATTGTCTTGATTTGT+TGG - Chr7:76732358-76732377 None:intergenic 25.0%
!!! CTTGTTTTGCAAGTAATTAA+AGG - Chr7:76735454-76735473 None:intergenic 25.0%
!!! GTATTTTGGACATTTACTTT+AGG + Chr7:76733827-76733846 MsG0780040377.01.T01:intron 25.0%
AATGCTTTCGGACATTTAAT+CGG - Chr7:76734528-76734547 None:intergenic 30.0%
AGCACATTTGTTTGAATAGT+TGG - Chr7:76733387-76733406 None:intergenic 30.0%
AGGAATGATCAAAATGTGTT+GGG - Chr7:76733981-76734000 None:intergenic 30.0%
ATAATGAGCAAATGAAAGAG+TGG - Chr7:76736093-76736112 None:intergenic 30.0%
ATCTACAGATTTAAGAACCA+AGG - Chr7:76736594-76736613 None:intergenic 30.0%
ATTTGTTTATCGTATCCACA+GGG + Chr7:76734161-76734180 MsG0780040377.01.T01:intron 30.0%
CAAAAAGCTTCAATATCATG+TGG + Chr7:76735526-76735545 MsG0780040377.01.T01:intron 30.0%
CATGTGAAAAAGTTGGAATA+TGG + Chr7:76733659-76733678 MsG0780040377.01.T01:intron 30.0%
CTCGTTTCAAATTTCAAAAG+TGG - Chr7:76735825-76735844 None:intergenic 30.0%
CTTCCAATAAACCATAAGTT+AGG + Chr7:76735138-76735157 MsG0780040377.01.T01:intron 30.0%
GAAAGAAGGACAAAATGATT+TGG - Chr7:76732175-76732194 None:intergenic 30.0%
GGCAATAATCAATTATTCCT+CGG + Chr7:76735423-76735442 MsG0780040377.01.T01:intron 30.0%
GTATTTGTGGAATTTCAGTT+AGG - Chr7:76734001-76734020 None:intergenic 30.0%
GTTATGACTTTAACATGTGT+TGG - Chr7:76736259-76736278 None:intergenic 30.0%
TAAAAACAAAACCTAGTGGT+AGG + Chr7:76735948-76735967 MsG0780040377.01.T01:intron 30.0%
TACCAAAACATGGAACAAAT+GGG - Chr7:76735357-76735376 None:intergenic 30.0%
TAGGAATGATCAAAATGTGT+TGG - Chr7:76733982-76734001 None:intergenic 30.0%
TATTTGTTTATCGTATCCAC+AGG + Chr7:76734160-76734179 MsG0780040377.01.T01:intron 30.0%
TCCAGAACATCTTCAAATTT+GGG - Chr7:76732412-76732431 None:intergenic 30.0%
TGACCTAACTTATGGTTTAT+TGG - Chr7:76735144-76735163 None:intergenic 30.0%
TGGTTATATTGAAGCAATGA+TGG - Chr7:76735615-76735634 None:intergenic 30.0%
TGTTTCGGTTTCATTTAATG+CGG + Chr7:76732778-76732797 MsG0780040377.01.T01:intron 30.0%
TTCCAGAACATCTTCAAATT+TGG - Chr7:76732413-76732432 None:intergenic 30.0%
TTGATTCCACTAAAAAGTAG+TGG - Chr7:76733609-76733628 None:intergenic 30.0%
TTGTGATTGTGCAAATGTTT+GGG - Chr7:76734471-76734490 None:intergenic 30.0%
TTTCTTTCATGCAAAAGTGA+TGG + Chr7:76734108-76734127 MsG0780040377.01.T01:intron 30.0%
TTTGTGATTGTGCAAATGTT+TGG - Chr7:76734472-76734491 None:intergenic 30.0%
! AAAAGTAGCAACTTTTGCAT+TGG - Chr7:76736292-76736311 None:intergenic 30.0%
! AATAAGGCAAGAAACTTGTT+AGG + Chr7:76734293-76734312 MsG0780040377.01.T01:intron 30.0%
! AATTATGTTTGATGACACTC+CGG + Chr7:76732375-76732394 MsG0780040377.01.T01:CDS 30.0%
! AGATGAAATGTGACACTTTT+TGG + Chr7:76732456-76732475 MsG0780040377.01.T01:intron 30.0%
! AGTAATTTTTCATGTAGACG+TGG + Chr7:76736492-76736511 MsG0780040377.01.T01:intron 30.0%
! CAAGACATAGTTTCTTTTTG+TGG - Chr7:76736225-76736244 None:intergenic 30.0%
! CTTTTGCATTGGAAATTGTA+CGG - Chr7:76736281-76736300 None:intergenic 30.0%
! GAATTGCCATTTGAAATTAC+AGG + Chr7:76732800-76732819 MsG0780040377.01.T01:intron 30.0%
! GGATGATAATGATAAATCGA+TGG - Chr7:76736421-76736440 None:intergenic 30.0%
! GTAAAATGGTCTTTTCAGTT+GGG + Chr7:76735866-76735885 MsG0780040377.01.T01:intron 30.0%
! GTCCTTCTTTCTTTAAAAGA+TGG + Chr7:76732184-76732203 MsG0780040377.01.T01:CDS 30.0%
!! AATTTGGGGTTTTCTTTAAC+CGG - Chr7:76732397-76732416 None:intergenic 30.0%
!! GGACTAGTATTTTGTCTAAA+CGG + Chr7:76736907-76736926 MsG0780040377.01.T01:CDS 30.0%
!! TATGGTTTATTGGAAGTGTT+AGG - Chr7:76735134-76735153 None:intergenic 30.0%
!!! ACTTTTTTTTAGCTCGAGTT+CGG - Chr7:76733245-76733264 None:intergenic 30.0%
!!! TCTTGATTTGTTGGCTTTTT+TGG - Chr7:76732349-76732368 None:intergenic 30.0%
AAAGCTTCAATATCATGTGG+TGG + Chr7:76735529-76735548 MsG0780040377.01.T01:intron 35.0%
AACATGGGAGGATAAATTCT+TGG + Chr7:76732264-76732283 MsG0780040377.01.T01:CDS 35.0%
AATCTTGCTCTTTACCCAAA+CGG - Chr7:76733864-76733883 None:intergenic 35.0%
AATTAAGTGATTCGAGCAAG+CGG + Chr7:76733172-76733191 MsG0780040377.01.T01:intron 35.0%
ACAAAATACTAGTCCTAACC+AGG - Chr7:76736902-76736921 None:intergenic 35.0%
ACACTTGAAAATCAAAGACC+TGG + Chr7:76736881-76736900 MsG0780040377.01.T01:CDS 35.0%
AGAGTGAGTTAACACGTATA+GGG + Chr7:76733804-76733823 MsG0780040377.01.T01:intron 35.0%
AGCAAAAGTGACCTAACTTA+TGG - Chr7:76735152-76735171 None:intergenic 35.0%
AGTAATTAAAGGAAAAGCCG+AGG - Chr7:76735443-76735462 None:intergenic 35.0%
AGTTAAACATGACAGAATGC+AGG - Chr7:76735555-76735574 None:intergenic 35.0%
ATGCTTAAACAATGCCCTTA+GGG + Chr7:76736314-76736333 MsG0780040377.01.T01:intron 35.0%
ATTCCACTAAAAAGTAGTGG+TGG - Chr7:76733606-76733625 None:intergenic 35.0%
ATTTGTATCACGTGAGTTCT+TGG - Chr7:76735738-76735757 None:intergenic 35.0%
CAACAATTCAAACATGTGTG+TGG - Chr7:76733574-76733593 None:intergenic 35.0%
CAACTATTCAAACATGTGTG+TGG - Chr7:76733456-76733475 None:intergenic 35.0%
CACACAACATGTGAAAAAGT+TGG + Chr7:76733652-76733671 MsG0780040377.01.T01:intron 35.0%
CACATATTCCAATAGCTACA+TGG + Chr7:76733517-76733536 MsG0780040377.01.T01:intron 35.0%
CAGTAATTACTTGTGGAGAT+TGG - Chr7:76735781-76735800 None:intergenic 35.0%
CATCGAGATTCAAGATGATT+TGG - Chr7:76734652-76734671 None:intergenic 35.0%
CCAGAACATCTTCAAATTTG+GGG - Chr7:76732411-76732430 None:intergenic 35.0%
CGTCATTTACTTGTGTCAAT+AGG + Chr7:76732938-76732957 MsG0780040377.01.T01:intron 35.0%
GATTTAGCTACTCATTTCCA+TGG + Chr7:76734786-76734805 MsG0780040377.01.T01:intron 35.0%
GTACCAAAACATGGAACAAA+TGG - Chr7:76735358-76735377 None:intergenic 35.0%
GTCAAGATGATGATACTGAT+CGG + Chr7:76736796-76736815 MsG0780040377.01.T01:CDS 35.0%
GTGAAACGTTAACGCATTAT+CGG + Chr7:76732687-76732706 MsG0780040377.01.T01:intron 35.0%
TAAAGGTCAAAACGCTTCTT+TGG - Chr7:76735271-76735290 None:intergenic 35.0%
TAGCTATTGGAATATGTGTG+TGG - Chr7:76733515-76733534 None:intergenic 35.0%
TATAAAAGCAAGGCAAAGAG+TGG - Chr7:76735013-76735032 None:intergenic 35.0%
TGAAAATCAAAGACCTGGTT+AGG + Chr7:76736886-76736905 MsG0780040377.01.T01:CDS 35.0%
TGAGACTATTTCCAACAAGA+GGG + Chr7:76736770-76736789 MsG0780040377.01.T01:CDS 35.0%
TGTTTCATCCATGTAGCTAT+TGG - Chr7:76733528-76733547 None:intergenic 35.0%
TTAGAAGTTCGATGATCAAG+TGG - Chr7:76736626-76736645 None:intergenic 35.0%
TTCCACTAAAAAGTAGTGGT+GGG - Chr7:76733605-76733624 None:intergenic 35.0%
TTCCTTAAACAATGCCCTTA+GGG - Chr7:76736201-76736220 None:intergenic 35.0%
TTTCGGACATTTAATCGGTT+GGG - Chr7:76734523-76734542 None:intergenic 35.0%
! AATGATTTGGGATTAGACCA+AGG - Chr7:76732162-76732181 None:intergenic 35.0%
! CATACTTTATCCTTTTGTGC+AGG - Chr7:76735384-76735403 None:intergenic 35.0%
! CTAGTATTTTGTCTAAACGG+TGG + Chr7:76736910-76736929 MsG0780040377.01.T01:CDS 35.0%
! GGTAAAATGGTCTTTTCAGT+TGG + Chr7:76735865-76735884 MsG0780040377.01.T01:intron 35.0%
! TTCCCATTTGTTCCATGTTT+TGG + Chr7:76735352-76735371 MsG0780040377.01.T01:intron 35.0%
!! AACTTATGCAGGAGTATTTG+TGG - Chr7:76734014-76734033 None:intergenic 35.0%
!! ATTGCTGGATGTTGTTGTTT+CGG + Chr7:76732763-76732782 MsG0780040377.01.T01:intron 35.0%
!! CGAGCTTGAATGCTTTTTAT+TGG + Chr7:76735325-76735344 MsG0780040377.01.T01:intron 35.0%
!! GAAATGTGACACTTTTTGGT+CGG + Chr7:76732460-76732479 MsG0780040377.01.T01:intron 35.0%
!! GCAAGAAACTTGTTAGGATT+AGG + Chr7:76734299-76734318 MsG0780040377.01.T01:intron 35.0%
!!! CAACTTTTTCACATGTTGTG+TGG - Chr7:76733654-76733673 None:intergenic 35.0%
!!! CTTTGATTTTCAAGTGTGCT+AGG - Chr7:76736878-76736897 None:intergenic 35.0%
!!! TAACACGTATAGGGGTATTT+TGG + Chr7:76733813-76733832 MsG0780040377.01.T01:intron 35.0%
!!! TGATTTGTTGGCTTTTTTGG+TGG - Chr7:76732346-76732365 None:intergenic 35.0%
AAAACCAGTGCATAATGCAC+TGG + Chr7:76732847-76732866 MsG0780040377.01.T01:intron 40.0%
AAATCCTCTGTTGGGATTAG+AGG - Chr7:76734771-76734790 None:intergenic 40.0%
AAATGCTAACAAGTGCCCTA+AGG - Chr7:76736332-76736351 None:intergenic 40.0%
AACTTGCAATGGCGAGTTAA+AGG - Chr7:76735288-76735307 None:intergenic 40.0%
AATGCTAACAAGTGCCCTAA+GGG - Chr7:76736331-76736350 None:intergenic 40.0%
ATGTTGATGTTCGTGATTGC+TGG + Chr7:76732748-76732767 MsG0780040377.01.T01:intron 40.0%
ATTAAGTGATTCGAGCAAGC+GGG + Chr7:76733173-76733192 MsG0780040377.01.T01:intron 40.0%
ATTCAAACATGTGTGTGGCT+AGG - Chr7:76733451-76733470 None:intergenic 40.0%
CAATATCACTTTGGACACGA+AGG - Chr7:76734416-76734435 None:intergenic 40.0%
CAATGTATCAAAGCCCAACA+AGG - Chr7:76733913-76733932 None:intergenic 40.0%
CAGAGTGAGTTAACACGTAT+AGG + Chr7:76733803-76733822 MsG0780040377.01.T01:intron 40.0%
CAGGTACAAACATGCCAAAA+TGG + Chr7:76732819-76732838 MsG0780040377.01.T01:intron 40.0%
CATTGAGCTCAAAGATAGAC+CGG + Chr7:76732318-76732337 MsG0780040377.01.T01:CDS 40.0%
CCCCAAATTTGAAGATGTTC+TGG + Chr7:76732408-76732427 MsG0780040377.01.T01:CDS 40.0%
CTAGGAATATGTGTAGCTGT+TGG - Chr7:76733433-76733452 None:intergenic 40.0%
CTGAGACTATTTCCAACAAG+AGG + Chr7:76736769-76736788 MsG0780040377.01.T01:CDS 40.0%
CTTGTGCTTGTAGTTCTCTT+AGG + Chr7:76736745-76736764 MsG0780040377.01.T01:intron 40.0%
CTTTCGGACATTTAATCGGT+TGG - Chr7:76734524-76734543 None:intergenic 40.0%
GAAAGTGACTTGACAACACT+TGG - Chr7:76735184-76735203 None:intergenic 40.0%
GAGTAGCTAAATCCTCTGTT+GGG - Chr7:76734779-76734798 None:intergenic 40.0%
GAGTGAGTTAACACGTATAG+GGG + Chr7:76733805-76733824 MsG0780040377.01.T01:intron 40.0%
GATGCTTAAACAATGCCCTT+AGG + Chr7:76736313-76736332 MsG0780040377.01.T01:intron 40.0%
GGATCAGTGATGATACTGAT+CGG + Chr7:76736817-76736836 MsG0780040377.01.T01:CDS 40.0%
GGCAAAGAGTGGAGAAAATA+TGG - Chr7:76735002-76735021 None:intergenic 40.0%
GGCTATGAATATGTGTAGCT+AGG - Chr7:76733494-76733513 None:intergenic 40.0%
GTTCCTTAAACAATGCCCTT+AGG - Chr7:76736202-76736221 None:intergenic 40.0%
TAACTCACGCATGGGTAAAA+TGG + Chr7:76735852-76735871 MsG0780040377.01.T01:intron 40.0%
TACAAACATGCCAAAATGGC+TGG + Chr7:76732823-76732842 MsG0780040377.01.T01:intron 40.0%
TAGCGTGAGTTAACTTATGC+AGG - Chr7:76734025-76734044 None:intergenic 40.0%
TCCTTCCATTCATTCTTGCA+AGG - Chr7:76734815-76734834 None:intergenic 40.0%
TGAGTAGCTAAATCCTCTGT+TGG - Chr7:76734780-76734799 None:intergenic 40.0%
TGCACAATCACAAAGTCGAT+CGG + Chr7:76734478-76734497 MsG0780040377.01.T01:intron 40.0%
TGCAGGAATGTACCAAAACA+TGG - Chr7:76735367-76735386 None:intergenic 40.0%
TTACCATGCAATGTCACTGA+CGG + Chr7:76736849-76736868 MsG0780040377.01.T01:CDS 40.0%
TTCTTGGAGTGGAAATTGAG+TGG - Chr7:76735072-76735091 None:intergenic 40.0%
TTGGTACATTCCTGCACAAA+AGG + Chr7:76735371-76735390 MsG0780040377.01.T01:intron 40.0%
! ACCGTTTTCCTATGGCATTA+GGG - Chr7:76733363-76733382 None:intergenic 40.0%
! ATTTTCAGCCCTAATGCCAT+AGG + Chr7:76733352-76733371 MsG0780040377.01.T01:intron 40.0%
! GTATTTTGTCTAAACGGTGG+AGG + Chr7:76736913-76736932 MsG0780040377.01.T01:CDS 40.0%
! TTTTCACATGTTGTGTGGCT+AGG - Chr7:76733649-76733668 None:intergenic 40.0%
!! AAAAGCATTCAAGCTCGCAA+TGG - Chr7:76735322-76735341 None:intergenic 40.0%
!! AATGCACTGGTTCTGTTAAC+TGG + Chr7:76732860-76732879 MsG0780040377.01.T01:intron 40.0%
!! CATTCTGATATGGCCTTGTT+GGG + Chr7:76733897-76733916 MsG0780040377.01.T01:intron 40.0%
!! CGACTCGATAAGTATTGGTT+CGG - Chr7:76733296-76733315 None:intergenic 40.0%
!! CGACTCTTCTGAAATTTCCT+TGG + Chr7:76736574-76736593 MsG0780040377.01.T01:intron 40.0%
!! TCATTCTGATATGGCCTTGT+TGG + Chr7:76733896-76733915 MsG0780040377.01.T01:intron 40.0%
!!! ACTGGTTTTTCCAGCCATTT+TGG - Chr7:76732836-76732855 None:intergenic 40.0%
!!! ATCCCACCACTACTTTTTAG+TGG + Chr7:76733600-76733619 MsG0780040377.01.T01:intron 40.0%
!!! GTCGGTGTTAATCCGTTTTT+TGG + Chr7:76732478-76732497 MsG0780040377.01.T01:intron 40.0%
!!! TCCAAGAAAACCACTGGTTT+TGG + Chr7:76735084-76735103 MsG0780040377.01.T01:intron 40.0%
AAATCACAGGAACGAAGAGG+CGG + Chr7:76732240-76732259 MsG0780040377.01.T01:CDS 45.0%
ACCTTGCGATGTCTCAACAA+AGG + Chr7:76734850-76734869 MsG0780040377.01.T01:intron 45.0%
ACTTGACAACACTTGGATGG+TGG - Chr7:76735177-76735196 None:intergenic 45.0%
AGAACCAGTGCATTATGCAC+TGG - Chr7:76732854-76732873 None:intergenic 45.0%
AGGAATGAGCAAGACCGTTT+GGG + Chr7:76733847-76733866 MsG0780040377.01.T01:intron 45.0%
AGTACCTCTAATCCCAACAG+AGG + Chr7:76734764-76734783 MsG0780040377.01.T01:intron 45.0%
ATCTTGACTGTCCCTCTTGT+TGG - Chr7:76736784-76736803 None:intergenic 45.0%
CGAGCAAGAAGAACTTGCAA+TGG - Chr7:76735299-76735318 None:intergenic 45.0%
GAGAAATCACAGGAACGAAG+AGG + Chr7:76732237-76732256 MsG0780040377.01.T01:CDS 45.0%
GAGCTGTGGTACACAGATTT+GGG - Chr7:76735110-76735129 None:intergenic 45.0%
GCCCTAATGCCATAGGAAAA+CGG + Chr7:76733359-76733378 MsG0780040377.01.T01:intron 45.0%
GCCTTGCAAGAATGAATGGA+AGG + Chr7:76734811-76734830 MsG0780040377.01.T01:intron 45.0%
GCTCAATGTCCATGAGTGTT+CGG - Chr7:76732306-76732325 None:intergenic 45.0%
GGAAGCCTTGCAAGAATGAA+TGG + Chr7:76734807-76734826 MsG0780040377.01.T01:intron 45.0%
GGCGCGTATCAACCAAAAAA+CGG - Chr7:76732493-76732512 None:intergenic 45.0%
GTGACTTGACAACACTTGGA+TGG - Chr7:76735180-76735199 None:intergenic 45.0%
GTGGCTAGGAAAATGTGTGA+TGG - Chr7:76733555-76733574 None:intergenic 45.0%
TAGGAATGAGCAAGACCGTT+TGG + Chr7:76733846-76733865 MsG0780040377.01.T01:intron 45.0%
TCATTCTTGCAAGGCTTCCA+TGG - Chr7:76734806-76734825 None:intergenic 45.0%
TCCTTTGTTGAGACATCGCA+AGG - Chr7:76734854-76734873 None:intergenic 45.0%
TGAAAATGAGTCGAGTCGAG+TGG - Chr7:76733339-76733358 None:intergenic 45.0%
TGAGCTGTGGTACACAGATT+TGG - Chr7:76735111-76735130 None:intergenic 45.0%
TGTCGAAATGTCCTACCACT+AGG - Chr7:76735962-76735981 None:intergenic 45.0%
TTCCACTCCAAGAAAACCAC+TGG + Chr7:76735078-76735097 MsG0780040377.01.T01:intron 45.0%
! AACCAGTGGTTTTCTTGGAG+TGG - Chr7:76735083-76735102 None:intergenic 45.0%
! AATGACGCTTTTACCCCTAG+CGG - Chr7:76732925-76732944 None:intergenic 45.0%
! CACCGTTTTCCTATGGCATT+AGG - Chr7:76733364-76733383 None:intergenic 45.0%
! CAGGGACTAGTGCATTATCA+AGG + Chr7:76734179-76734198 MsG0780040377.01.T01:intron 45.0%
! CGACTCGACTCGATAAGTAT+TGG - Chr7:76733301-76733320 None:intergenic 45.0%
! CTAAACGGTGGAGGTATATG+TGG + Chr7:76736922-76736941 MsG0780040377.01.T01:CDS 45.0%
! GCCAAAACCAGTGGTTTTCT+TGG - Chr7:76735088-76735107 None:intergenic 45.0%
! GGGAGCGAGCAATTTTTGTT+GGG + Chr7:76735886-76735905 MsG0780040377.01.T01:intron 45.0%
! TAGTTGGCACCGTTTTCCTA+TGG - Chr7:76733371-76733390 None:intergenic 45.0%
! TGATAATGCACTAGTCCCTG+TGG - Chr7:76734179-76734198 None:intergenic 45.0%
! TGGGAGCGAGCAATTTTTGT+TGG + Chr7:76735885-76735904 MsG0780040377.01.T01:intron 45.0%
!! CACTGGTTCTGTTAACTGGT+GGG + Chr7:76732864-76732883 MsG0780040377.01.T01:intron 45.0%
!! TGCCCTAAGGGCATTGTTTA+AGG + Chr7:76736196-76736215 MsG0780040377.01.T01:intron 45.0%
!!! GTTGGCTTTTTTGGTGGAAC+CGG - Chr7:76732340-76732359 None:intergenic 45.0%
!! ATTAAAAAAATAATAATACT+AGG - Chr7:76732991-76733010 None:intergenic 5.0%
!! TAATAAAATAAAGATTAATA+AGG + Chr7:76734277-76734296 MsG0780040377.01.T01:intron 5.0%
!!! GTATTATTATTTTTTTAATT+TGG + Chr7:76732992-76733011 MsG0780040377.01.T01:intron 5.0%
ACCTAATGAGCCGAATCGAG+TGG + Chr7:76733200-76733219 MsG0780040377.01.T01:intron 50.0%
AGCGTGAGTTAACTCACGCA+TGG + Chr7:76733754-76733773 MsG0780040377.01.T01:intron 50.0%
AGTTCGCGAACCACTCGATT+CGG - Chr7:76733213-76733232 None:intergenic 50.0%
ATGCCGTCAGTGACATTGCA+TGG - Chr7:76736855-76736874 None:intergenic 50.0%
CAACGTGAGTTAACTCACGC+TGG - Chr7:76733696-76733715 None:intergenic 50.0%
CAGATTTGGGCCAAAACCAG+TGG - Chr7:76735097-76735116 None:intergenic 50.0%
CCACAGAGTGGAGAAATCAC+AGG + Chr7:76732227-76732246 MsG0780040377.01.T01:CDS 50.0%
CCTGTGATTTCTCCACTCTG+TGG - Chr7:76732230-76732249 None:intergenic 50.0%
CGATCGTTTCCGAACACTCA+TGG + Chr7:76732294-76732313 MsG0780040377.01.T01:CDS 50.0%
CTTGCCAACAAGTGCCCTAA+GGG + Chr7:76736184-76736203 MsG0780040377.01.T01:intron 50.0%
GCGAGCTCATTAACTCGCAA+TGG - Chr7:76735231-76735250 None:intergenic 50.0%
GCGTGAGTTAACTCACGCAT+GGG + Chr7:76735844-76735863 MsG0780040377.01.T01:intron 50.0%
TCTTGCCAACAAGTGCCCTA+AGG + Chr7:76736183-76736202 MsG0780040377.01.T01:intron 50.0%
TTTCTCCACTCTGTGGATGC+TGG - Chr7:76732223-76732242 None:intergenic 50.0%
TTTGGCACTCAAGCTCGCAA+TGG - Chr7:76735253-76735272 None:intergenic 50.0%
! AATGCCCTTAGGGCACTTGT+TGG - Chr7:76736343-76736324 None:intergenic 50.0%
!! ACCACTCGATTCGGCTCATT+AGG - Chr7:76733204-76733223 None:intergenic 50.0%
!! GCACTGGTTCTGTTAACTGG+TGG + Chr7:76732863-76732882 MsG0780040377.01.T01:intron 50.0%
!! TGGAAGTGTTAGGTGAGCTG+TGG - Chr7:76735124-76735143 None:intergenic 50.0%
AACCAGCCCTGCAACATAGC+AGG - Chr7:76734977-76734996 None:intergenic 55.0%
AACGGCTGTTAACTGCCGCT+AGG + Chr7:76732907-76732926 MsG0780040377.01.T01:intron 55.0%
ACGGCTGTTAACTGCCGCTA+GGG + Chr7:76732908-76732927 MsG0780040377.01.T01:intron 55.0%
AGGCAGCCTGCTATGTTGCA+GGG + Chr7:76734968-76734987 MsG0780040377.01.T01:intron 55.0%
CTGTGGATGCTGGAGGTAGT+GGG - Chr7:76732213-76732232 None:intergenic 55.0%
GAACGAAGAGGCGGCAACAT+GGG + Chr7:76732249-76732268 MsG0780040377.01.T01:CDS 55.0%
TACCTCCAGCATCCACAGAG+TGG + Chr7:76732215-76732234 MsG0780040377.01.T01:CDS 55.0%
TAGCGGCAGTTAACAGCCGT+TGG - Chr7:76732908-76732927 None:intergenic 55.0%
TATGTTCCACTCCCACGCAG+TGG + Chr7:76736948-76736967 MsG0780040377.01.T01:CDS 55.0%
TCTGTGGATGCTGGAGGTAG+TGG - Chr7:76732214-76732233 None:intergenic 55.0%
! CGTGTCGGCGCTTTAACCAA+CGG + Chr7:76732889-76732908 MsG0780040377.01.T01:intron 55.0%
! GTTAACTGGTGGGAGCGTGT+CGG + Chr7:76732874-76732893 MsG0780040377.01.T01:intron 55.0%
AGCCTGCTATGTTGCAGGGC+TGG + Chr7:76734972-76734991 MsG0780040377.01.T01:intron 60.0%
CGGCTGTTAACTGCCGCTAG+GGG + Chr7:76732909-76732928 MsG0780040377.01.T01:intron 60.0%
CTCCACTCTGTGGATGCTGG+AGG - Chr7:76732220-76732239 None:intergenic 60.0%
GAGGCAGCCTGCTATGTTGC+AGG + Chr7:76734967-76734986 MsG0780040377.01.T01:intron 60.0%
GGAACGAAGAGGCGGCAACA+TGG + Chr7:76732248-76732267 MsG0780040377.01.T01:CDS 60.0%
CGAAGAGGCGGCAACATGGG+AGG + Chr7:76732252-76732271 MsG0780040377.01.T01:CDS 65.0%
GTTCCACTCCCACGCAGTGG+CGG + Chr7:76736951-76736970 MsG0780040377.01.T01:CDS 65.0%
GATCCGCCACTGCGTGGGAG+TGG - Chr7:76736957-76736976 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 76732151 76736980 76732151 ID=MsG0780040377.01;Name=MsG0780040377.01
Chr7 mRNA 76732151 76736980 76732151 ID=MsG0780040377.01.T01;Parent=MsG0780040377.01;Name=MsG0780040377.01.T01;_AED=0.78;_eAED=0.78;_QI=0|0|0|0.5|1|1|2|0|178
Chr7 exon 76732151 76732464 76732151 ID=MsG0780040377.01.T01:exon:14701;Parent=MsG0780040377.01.T01
Chr7 exon 76736758 76736980 76736758 ID=MsG0780040377.01.T01:exon:14702;Parent=MsG0780040377.01.T01
Chr7 CDS 76732151 76732464 76732151 ID=MsG0780040377.01.T01:cds;Parent=MsG0780040377.01.T01
Chr7 CDS 76736758 76736980 76736758 ID=MsG0780040377.01.T01:cds;Parent=MsG0780040377.01.T01
Gene Sequence

>MsG0780040377.01.T01

ATGATTTGCCTTGGTCTAATCCCAAATCATTTTGTCCTTCTTTCTTTAAAAGATGGTTGCCCACTACCTCCAGCATCCACAGAGTGGAGAAATCACAGGAACGAAGAGGCGGCAACATGGGAGGATAAATTCTTGGATCAACACGATCGTTTCCGAACACTCATGGACATTGAGCTCAAAGATAGACCGGTTCCACCAAAAAAGCCAACAAATCAAGACAATCTAATTATGTTTGATGACACTCCGGTTAAAGAAAACCCCAAATTTGAAGATGTTCTGGAACATTTAGATGATTTGCTTTTATTAGATGAAATTTCTCTTAGGACTGAGACTATTTCCAACAAGAGGGACAGTCAAGATGATGATACTGATCGGATCAGTGATGATACTGATCGGATCAGTGACTTACCATGCAATGTCACTGACGGCATCCTAGCACACTTGAAAATCAAAGACCTGGTTAGGACTAGTATTTTGTCTAAACGGTGGAGGTATATGTGGACTTATGTTCCACTCCCACGCAGTGGCGGATCTTGA

Protein sequence

>MsG0780040377.01.T01

MICLGLIPNHFVLLSLKDGCPLPPASTEWRNHRNEEAATWEDKFLDQHDRFRTLMDIELKDRPVPPKKPTNQDNLIMFDDTPVKENPKFEDVLEHLDDLLLLDEISLRTETISNKRDSQDDDTDRISDDTDRISDLPCNVTDGILAHLKIKDLVRTSILSKRWRYMWTYVPLPRSGGS*