Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140200 | XP_013461731.1 | 94.318 | 352 | 20 | 0 | 1 | 352 | 1 | 352 | 0.0 | 681 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140200 | sp|Q9FMH5|CCA31_ARATH | 55.682 | 352 | 142 | 4 | 3 | 351 | 12 | 352 | 1.79e-132 | 385 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140200 | G8A2C7 | 94.318 | 352 | 20 | 0 | 1 | 352 | 1 | 352 | 0.0 | 681 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016040 | Msa0140200 | 0.825391 | 4.808869e-54 | -8.615850e-47 |
| Msa0019930 | Msa0140200 | 0.805235 | 1.472128e-49 | -8.615850e-47 |
| Msa0020540 | Msa0140200 | 0.837786 | 4.231088e-57 | -8.615850e-47 |
| Msa0025580 | Msa0140200 | 0.815893 | 7.320987e-52 | -8.615850e-47 |
| Msa0027280 | Msa0140200 | 0.811640 | 6.326765e-51 | -8.615850e-47 |
| Msa0032980 | Msa0140200 | 0.813240 | 2.829450e-51 | -8.615850e-47 |
| Msa0034830 | Msa0140200 | 0.828537 | 8.508043e-55 | -8.615850e-47 |
| Msa0035140 | Msa0140200 | 0.817939 | 2.542508e-52 | -8.615850e-47 |
| Msa0044520 | Msa0140200 | 0.802077 | 6.657834e-49 | -8.615850e-47 |
| Msa0056180 | Msa0140200 | 0.803798 | 2.934545e-49 | -8.615850e-47 |
| Msa0062340 | Msa0140200 | 0.812951 | 3.273131e-51 | -8.615850e-47 |
| Msa0067060 | Msa0140200 | 0.832056 | 1.175449e-55 | -8.615850e-47 |
| Msa0068150 | Msa0140200 | 0.808018 | 3.805480e-50 | -8.615850e-47 |
| Msa0073120 | Msa0140200 | 0.810354 | 1.201734e-50 | -8.615850e-47 |
| Msa0075530 | Msa0140200 | 0.813909 | 2.016051e-51 | -8.615850e-47 |
| Msa0077560 | Msa0140200 | 0.813971 | 1.953586e-51 | -8.615850e-47 |
| Msa0091350 | Msa0140200 | 0.802120 | 6.522213e-49 | -8.615850e-47 |
| Msa0091360 | Msa0140200 | 0.829548 | 4.840963e-55 | -8.615850e-47 |
| Msa0110200 | Msa0140200 | 0.814754 | 1.311346e-51 | -8.615850e-47 |
| Msa0115550 | Msa0140200 | 0.806212 | 9.181127e-50 | -8.615850e-47 |
| Msa0121330 | Msa0140200 | 0.822913 | 1.836781e-53 | -8.615850e-47 |
| Msa0122330 | Msa0140200 | 0.800625 | 1.319997e-48 | -8.615850e-47 |
| Msa0123070 | Msa0140200 | 0.814641 | 1.389234e-51 | -8.615850e-47 |
| Msa0125590 | Msa0140200 | 0.803114 | 4.067764e-49 | -8.615850e-47 |
| Msa0140200 | Msa0140380 | 0.818666 | 1.740102e-52 | -8.615850e-47 |
| Msa0140200 | Msa0141640 | 0.825194 | 5.353601e-54 | -8.615850e-47 |
| Msa0140200 | Msa0153210 | 0.802833 | 4.651184e-49 | -8.615850e-47 |
| Msa0140200 | Msa0159590 | 0.844970 | 5.434692e-59 | -8.615850e-47 |
| Msa0140200 | Msa0159620 | 0.830931 | 2.223819e-55 | -8.615850e-47 |
| Msa0140200 | Msa0170070 | 0.805157 | 1.528474e-49 | -8.615850e-47 |
| Msa0140200 | Msa0174290 | 0.804767 | 1.844784e-49 | -8.615850e-47 |
| Msa0140200 | Msa0178450 | 0.801946 | 7.081208e-49 | -8.615850e-47 |
| Msa0140200 | Msa0190730 | 0.818243 | 2.169600e-52 | -8.615850e-47 |
| Msa0140200 | Msa0194630 | 0.836407 | 9.529267e-57 | -8.615850e-47 |
| Msa0140200 | Msa0200050 | 0.806396 | 8.393368e-50 | -8.615850e-47 |
| Msa0140200 | Msa0213030 | 0.823726 | 1.186288e-53 | -8.615850e-47 |
| Msa0140200 | Msa0232760 | 0.813789 | 2.142491e-51 | -8.615850e-47 |
| Msa0140200 | Msa0367150 | 0.823111 | 1.651043e-53 | -8.615850e-47 |
| Msa0140200 | Msa0373170 | 0.824579 | 7.477497e-54 | -8.615850e-47 |
| Msa0140200 | Msa0373500 | 0.826731 | 2.309504e-54 | -8.615850e-47 |
| Msa0140200 | Msa0373590 | 0.801369 | 9.302019e-49 | -8.615850e-47 |
| Msa0140200 | Msa0380490 | 0.810545 | 1.092876e-50 | -8.615850e-47 |
| Msa0140200 | Msa0380710 | 0.880065 | 7.461818e-70 | -8.615850e-47 |
| Msa0140200 | Msa0382230 | 0.809345 | 1.981511e-50 | -8.615850e-47 |
| Msa0140200 | Msa0383000 | 0.831834 | 1.333187e-55 | -8.615850e-47 |
| Msa0140200 | Msa0400950 | 0.805710 | 1.170450e-49 | -8.615850e-47 |
| Msa0140200 | Msa0404770 | 0.903960 | 2.020274e-79 | -8.615850e-47 |
| Msa0140200 | Msa0405620 | 0.805393 | 1.364195e-49 | -8.615850e-47 |
| Msa0140200 | Msa0415140 | 0.813631 | 2.321142e-51 | -8.615850e-47 |
| Msa0140200 | Msa0415820 | 0.804740 | 1.868832e-49 | -8.615850e-47 |
| Msa0140200 | Msa0421130 | 0.808729 | 2.684096e-50 | -8.615850e-47 |
| Msa0140200 | Msa0421750 | 0.813196 | 2.892845e-51 | -8.615850e-47 |
| Msa0140200 | Msa0422050 | 0.829268 | 5.659270e-55 | -8.615850e-47 |
| Msa0140200 | Msa0430600 | 0.818934 | 1.512918e-52 | -8.615850e-47 |
| Msa0140200 | Msa0431200 | 0.802570 | 5.268636e-49 | -8.615850e-47 |
| Msa0140200 | Msa0431740 | 0.821735 | 3.447294e-53 | -8.615850e-47 |
| Msa0140200 | Msa0432010 | 0.834197 | 3.444085e-56 | -8.615850e-47 |
| Msa0140200 | Msa0433150 | 0.823963 | 1.043337e-53 | -8.615850e-47 |
| Msa0140200 | Msa0433760 | 0.809201 | 2.126643e-50 | -8.615850e-47 |
| Msa0140200 | Msa0459740 | 0.805843 | 1.097641e-49 | -8.615850e-47 |
| Msa0140200 | Msa0466520 | 0.806304 | 8.779860e-50 | -8.615850e-47 |
| Msa0140200 | Msa0466880 | 0.820079 | 8.289013e-53 | -8.615850e-47 |
| Msa0140200 | Msa0467690 | 0.821765 | 3.392487e-53 | -8.615850e-47 |
| Msa0140200 | Msa0468620 | 0.812806 | 3.522486e-51 | -8.615850e-47 |
| Msa0140200 | Msa0468700 | 0.832339 | 1.000467e-55 | -8.615850e-47 |
| Msa0140200 | Msa0476280 | 0.801290 | 9.655894e-49 | -8.615850e-47 |
| Msa0140200 | Msa0477630 | 0.808502 | 3.001754e-50 | -8.615850e-47 |
| Msa0140200 | Msa0481890 | 0.811431 | 7.023941e-51 | -8.615850e-47 |
| Msa0140200 | Msa0500570 | 0.809398 | 1.929895e-50 | -8.615850e-47 |
| Msa0140200 | Msa0503990 | 0.814859 | 1.242937e-51 | -8.615850e-47 |
| Msa0140200 | Msa0506540 | 0.805665 | 1.196278e-49 | -8.615850e-47 |
| Msa0140200 | Msa0507020 | 0.800590 | 1.342251e-48 | -8.615850e-47 |
| Msa0140200 | Msa0507920 | 0.811607 | 6.433860e-51 | -8.615850e-47 |
| Msa0140200 | Msa0513080 | 0.812299 | 4.545956e-51 | -8.615850e-47 |
| Msa0140200 | Msa0513640 | 0.801442 | 8.985330e-49 | -8.615850e-47 |
| Msa0140200 | Msa0514020 | 0.817644 | 2.963570e-52 | -8.615850e-47 |
| Msa0140200 | Msa0514500 | 0.813898 | 2.027274e-51 | -8.615850e-47 |
| Msa0140200 | Msa0514580 | 0.836221 | 1.062679e-56 | -8.615850e-47 |
| Msa0140200 | Msa0520680 | 0.806223 | 9.128925e-50 | -8.615850e-47 |
| Msa0140200 | Msa0520870 | 0.832855 | 7.450220e-56 | -8.615850e-47 |
| Msa0140200 | Msa0521680 | 0.821256 | 4.447543e-53 | -8.615850e-47 |
| Msa0140200 | Msa0524520 | 0.807930 | 3.973962e-50 | -8.615850e-47 |
| Msa0140200 | Msa0527850 | 0.804573 | 2.024262e-49 | -8.615850e-47 |
| Msa0140200 | Msa0531960 | 0.849824 | 2.523384e-60 | -8.615850e-47 |
| Msa0140200 | Msa0537990 | 0.819937 | 8.935761e-53 | -8.615850e-47 |
| Msa0140200 | Msa0550590 | 0.819587 | 1.073753e-52 | -8.615850e-47 |
| Msa0140200 | Msa0561560 | 0.838888 | 2.199960e-57 | -8.615850e-47 |
| Msa0140200 | Msa0563900 | 0.805739 | 1.154247e-49 | -8.615850e-47 |
| Msa0140200 | Msa0567170 | 0.809646 | 1.707122e-50 | -8.615850e-47 |
| Msa0140200 | Msa0580200 | 0.806807 | 6.874931e-50 | -8.615850e-47 |
| Msa0140200 | Msa0580810 | 0.801889 | 7.275429e-49 | -8.615850e-47 |
| Msa0140200 | Msa0585340 | 0.831351 | 1.753187e-55 | -8.615850e-47 |
| Msa0140200 | Msa0588920 | 0.817093 | 3.943602e-52 | -8.615850e-47 |
| Msa0140200 | Msa0603980 | 0.810129 | 1.343694e-50 | -8.615850e-47 |
| Msa0140200 | Msa0606100 | 0.853446 | 2.376543e-61 | -8.615850e-47 |
| Msa0140200 | Msa0607800 | 0.807567 | 4.747006e-50 | -8.615850e-47 |
| Msa0140200 | Msa0613580 | 0.809039 | 2.303746e-50 | -8.615850e-47 |
| Msa0140200 | Msa0615630 | 0.823735 | 1.180475e-53 | -8.615850e-47 |
| Msa0140200 | Msa0620500 | 0.824518 | 7.727755e-54 | -8.615850e-47 |
| Msa0140200 | Msa0621710 | 0.858466 | 8.081649e-63 | -8.615850e-47 |
| Msa0140200 | Msa0625340 | 0.804514 | 2.082512e-49 | -8.615850e-47 |
| Msa0140200 | Msa0625620 | 0.837058 | 6.503893e-57 | -8.615850e-47 |
| Msa0140200 | Msa0647050 | 0.831821 | 1.343290e-55 | -8.615850e-47 |
| Msa0140200 | Msa0648760 | 0.801167 | 1.023230e-48 | -8.615850e-47 |
| Msa0140200 | Msa0652710 | 0.825301 | 5.050181e-54 | -8.615850e-47 |
| Msa0140200 | Msa0654740 | 0.823556 | 1.299646e-53 | -8.615850e-47 |
| Msa0140200 | Msa0658640 | 0.800059 | 1.720933e-48 | -8.615850e-47 |
| Msa0140200 | Msa0666700 | 0.848537 | 5.755344e-60 | -8.615850e-47 |
| Msa0140200 | Msa0668900 | 0.815112 | 1.092223e-51 | -8.615850e-47 |
| Msa0140200 | Msa0698730 | 0.843886 | 1.063069e-58 | -8.615850e-47 |
| Msa0140200 | Msa0707260 | 0.820769 | 5.757031e-53 | -8.615850e-47 |
| Msa0140200 | Msa0709440 | 0.811553 | 6.610876e-51 | -8.615850e-47 |
| Msa0140200 | Msa0716480 | 0.812344 | 4.445668e-51 | -8.615850e-47 |
| Msa0140200 | Msa0717830 | 0.805680 | 1.187320e-49 | -8.615850e-47 |
| Msa0140200 | Msa0717900 | 0.827613 | 1.420492e-54 | -8.615850e-47 |
| Msa0140200 | Msa0740710 | 0.850352 | 1.794548e-60 | -8.615850e-47 |
| Msa0140200 | Msa0758590 | 0.807414 | 5.113253e-50 | -8.615850e-47 |
| Msa0140200 | Msa0773630 | 0.824987 | 5.991641e-54 | -8.615850e-47 |
| Msa0140200 | Msa0778600 | 0.801520 | 8.661653e-49 | -8.615850e-47 |
| Msa0140200 | Msa0780910 | 0.849937 | 2.345786e-60 | -8.615850e-47 |
| Msa0140200 | Msa0800660 | 0.817941 | 2.539418e-52 | -8.615850e-47 |
| Msa0140200 | Msa0811020 | 0.827655 | 1.387662e-54 | -8.615850e-47 |
| Msa0140200 | Msa0816080 | 0.803991 | 2.676828e-49 | -8.615850e-47 |
| Msa0140200 | Msa0818130 | 0.819113 | 1.376914e-52 | -8.615850e-47 |
| Msa0140200 | Msa0821160 | 0.850956 | 1.214213e-60 | -8.615850e-47 |
| Msa0140200 | Msa0837460 | 0.816888 | 4.382786e-52 | -8.615850e-47 |
| Msa0140200 | Msa0863620 | 0.818137 | 2.293544e-52 | -8.615850e-47 |
| Msa0140200 | Msa0866530 | 0.801453 | 8.939876e-49 | -8.615850e-47 |
| Msa0140200 | Msa0900760 | 0.851928 | 6.447630e-61 | -8.615850e-47 |
| Msa0140200 | Msa0909760 | 0.858036 | 1.084972e-62 | -8.615850e-47 |
| Msa0140200 | Msa0931590 | 0.838275 | 3.167355e-57 | -8.615850e-47 |
| Msa0140200 | Msa1033920 | 0.811145 | 8.106613e-51 | -8.615850e-47 |
| Msa0140200 | Msa1035570 | 0.842662 | 2.254457e-58 | -8.615850e-47 |
| Msa0140200 | Msa1035610 | 0.843130 | 1.692542e-58 | -8.615850e-47 |
| Msa0140200 | Msa1035650 | 0.812506 | 4.096704e-51 | -8.615850e-47 |
| Msa0140200 | Msa1037540 | 0.805318 | 1.414181e-49 | -8.615850e-47 |
| Msa0140200 | Msa1060900 | 0.807567 | 4.744792e-50 | -8.615850e-47 |
| Msa0140200 | Msa1076020 | 0.814974 | 1.171947e-51 | -8.615850e-47 |
| Msa0140200 | Msa1078880 | 0.845727 | 3.391348e-59 | -8.615850e-47 |
| Msa0140200 | Msa1078970 | 0.845294 | 4.441402e-59 | -8.615850e-47 |
| Msa0140200 | Msa1081390 | 0.816936 | 4.276652e-52 | -8.615850e-47 |
| Msa0140200 | Msa1084530 | 0.817771 | 2.773936e-52 | -8.615850e-47 |
| Msa0140200 | Msa1114630 | 0.812558 | 3.990496e-51 | -8.615850e-47 |
| Msa0140200 | Msa1116190 | 0.824416 | 8.169168e-54 | -8.615850e-47 |
| Msa0140200 | Msa1116220 | 0.821612 | 3.680517e-53 | -8.615850e-47 |
| Msa0140200 | Msa1116660 | 0.842644 | 2.280612e-58 | -8.615850e-47 |
| Msa0140200 | Msa1116740 | 0.832575 | 8.743662e-56 | -8.615850e-47 |
| Msa0140200 | Msa1125820 | 0.814694 | 1.351972e-51 | -8.615850e-47 |
| Msa0140200 | Msa1125990 | 0.815446 | 9.204908e-52 | -8.615850e-47 |
| Msa0140200 | Msa1127280 | 0.810692 | 1.015817e-50 | -8.615850e-47 |
| Msa0140200 | Msa1130420 | 0.825619 | 4.245708e-54 | -8.615850e-47 |
| Msa0140200 | Msa1132530 | 0.810277 | 1.248873e-50 | -8.615850e-47 |
| Msa0140200 | Msa1139050 | 0.804270 | 2.341602e-49 | -8.615850e-47 |
| Msa0140200 | Msa1159590 | 0.817745 | 2.811873e-52 | -8.615850e-47 |
| Msa0140200 | Msa1162880 | 0.840043 | 1.102460e-57 | -8.615850e-47 |
| Msa0140200 | Msa1163180 | 0.801900 | 7.239429e-49 | -8.615850e-47 |
| Msa0140200 | Msa1165480 | 0.819813 | 9.537250e-53 | -8.615850e-47 |
| Msa0140200 | Msa1169190 | 0.845362 | 4.257163e-59 | -8.615850e-47 |
| Msa0140200 | Msa1171290 | 0.811655 | 6.280617e-51 | -8.615850e-47 |
| Msa0140200 | Msa1190390 | 0.818334 | 2.069013e-52 | -8.615850e-47 |
| Msa0140200 | Msa1215980 | 0.824903 | 6.272002e-54 | -8.615850e-47 |
| Msa0140200 | Msa1219770 | 0.800966 | 1.124371e-48 | -8.615850e-47 |
| Msa0140200 | Msa1244240 | 0.830354 | 3.078642e-55 | -8.615850e-47 |
| Msa0140200 | Msa1254420 | 0.802548 | 5.324465e-49 | -8.615850e-47 |
| Msa0140200 | Msa1254540 | 0.854589 | 1.113296e-61 | -8.615850e-47 |
| Msa0140200 | Msa1263740 | 0.828170 | 1.043069e-54 | -8.615850e-47 |
| Msa0140200 | Msa1263780 | 0.832999 | 6.858739e-56 | -8.615850e-47 |
| Msa0140200 | Msa1294460 | 0.807288 | 5.439058e-50 | -8.615850e-47 |
| Msa0140200 | Msa1332950 | 0.801156 | 1.028327e-48 | -8.615850e-47 |
| Msa0140200 | Msa1339170 | 0.805987 | 1.023915e-49 | -8.615850e-47 |
| Msa0140200 | Msa1368750 | 0.831683 | 1.452280e-55 | -8.615850e-47 |
| Msa0140200 | Msa1374790 | 0.834961 | 2.213363e-56 | -8.615850e-47 |
| Msa0140200 | Msa1380120 | 0.807297 | 5.414247e-50 | -8.615850e-47 |
| Msa0140200 | Msa1381470 | 0.819801 | 9.595734e-53 | -8.615850e-47 |
| Msa0140200 | Msa1383310 | 0.804329 | 2.275785e-49 | -8.615850e-47 |
| Msa0140200 | Msa1384150 | 0.813474 | 2.513331e-51 | -8.615850e-47 |
| Msa0140200 | Msa1387500 | 0.817105 | 3.918439e-52 | -8.615850e-47 |
| Msa0140200 | Msa1393560 | 0.834202 | 3.435165e-56 | -8.615850e-47 |
| Msa0140200 | Msa1406720 | 0.815738 | 7.926761e-52 | -8.615850e-47 |
| Msa0140200 | Msa1409410 | 0.833033 | 6.725936e-56 | -8.615850e-47 |
| Msa0140200 | Msa1426110 | 0.811025 | 8.604872e-51 | -8.615850e-47 |
| Msa0140200 | Msa1426320 | 0.823128 | 1.636677e-53 | -8.615850e-47 |
| Msa0140200 | Msa1429070 | 0.805102 | 1.569986e-49 | -8.615850e-47 |
| Msa0140200 | Msa1435100 | 0.813267 | 2.790300e-51 | -8.615850e-47 |
| Msa0140200 | Msa1439730 | 0.811706 | 6.120819e-51 | -8.615850e-47 |
| Msa0140200 | Msa1445120 | 0.813798 | 2.133061e-51 | -8.615850e-47 |
| Msa0140200 | Msa1446100 | 0.827175 | 1.808927e-54 | -8.615850e-47 |
| Msa0140200 | Msa1447170 | 0.827466 | 1.540055e-54 | -8.615850e-47 |
| Msa0140200 | Msa1450190 | 0.836684 | 8.100121e-57 | -8.615850e-47 |
| Msa0140200 | Msa1451820 | 0.833632 | 4.770466e-56 | -8.615850e-47 |
| Msa0140200 | Msa1454010 | 0.823729 | 1.184230e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140200 | MtrunA17_Chr3g0134421 | 94.318 | 352 | 20 | 0 | 1 | 352 | 1 | 352 | 0.0 | 681 |
| Msa0140200 | MtrunA17_Chr3g0134411 | 69.359 | 359 | 103 | 3 | 1 | 352 | 1 | 359 | 5.77e-177 | 495 |
| Msa0140200 | MtrunA17_Chr3g0134401 | 69.081 | 359 | 85 | 5 | 1 | 352 | 1 | 340 | 6.30e-174 | 486 |
| Msa0140200 | MtrunA17_Chr1g0152871 | 63.704 | 270 | 97 | 1 | 82 | 350 | 89 | 358 | 2.50e-123 | 359 |
| Msa0140200 | MtrunA17_Chr3g0134441 | 51.714 | 350 | 146 | 4 | 1 | 349 | 2 | 329 | 2.81e-110 | 325 |
| Msa0140200 | MtrunA17_Chr3g0138431 | 49.810 | 263 | 130 | 1 | 80 | 342 | 209 | 469 | 4.48e-85 | 265 |
| Msa0140200 | MtrunA17_Chr1g0148681 | 49.049 | 263 | 132 | 1 | 80 | 342 | 152 | 412 | 3.03e-83 | 258 |
| Msa0140200 | MtrunA17_Chr3g0125051 | 46.442 | 267 | 141 | 1 | 84 | 350 | 240 | 504 | 6.46e-82 | 258 |
| Msa0140200 | MtrunA17_Chr3g0134431 | 53.571 | 252 | 95 | 4 | 88 | 339 | 13 | 242 | 1.18e-80 | 246 |
| Msa0140200 | MtrunA17_Chr3g0125041 | 46.642 | 268 | 139 | 2 | 84 | 349 | 243 | 508 | 1.97e-80 | 254 |
| Msa0140200 | MtrunA17_Chr2g0332171 | 45.361 | 291 | 148 | 4 | 67 | 349 | 198 | 485 | 1.32e-74 | 238 |
| Msa0140200 | MtrunA17_Chr2g0332181 | 45.489 | 266 | 142 | 2 | 84 | 349 | 167 | 429 | 4.30e-73 | 233 |
| Msa0140200 | MtrunA17_Chr8g0370671 | 31.548 | 336 | 212 | 7 | 6 | 336 | 97 | 419 | 6.60e-46 | 162 |
| Msa0140200 | MtrunA17_Chr5g0441371 | 38.710 | 217 | 127 | 3 | 112 | 327 | 189 | 400 | 5.74e-44 | 156 |
| Msa0140200 | MtrunA17_Chr7g0255771 | 34.572 | 269 | 161 | 5 | 85 | 341 | 187 | 452 | 9.80e-44 | 157 |
| Msa0140200 | MtrunA17_Chr5g0406741 | 32.792 | 308 | 181 | 6 | 39 | 336 | 124 | 415 | 2.33e-43 | 155 |
| Msa0140200 | MtrunA17_Chr8g0357001 | 32.599 | 227 | 126 | 4 | 77 | 301 | 493 | 694 | 6.22e-34 | 132 |
| Msa0140200 | MtrunA17_Chr3g0102851 | 33.333 | 225 | 133 | 7 | 119 | 338 | 60 | 272 | 5.36e-26 | 105 |
| Msa0140200 | MtrunA17_Chr3g0103471 | 34.872 | 195 | 118 | 5 | 115 | 304 | 46 | 236 | 1.39e-23 | 98.6 |
| Msa0140200 | MtrunA17_Chr3g0102861 | 33.846 | 195 | 120 | 5 | 115 | 304 | 46 | 236 | 7.38e-22 | 93.6 |
| Msa0140200 | MtrunA17_Chr3g0102621 | 31.034 | 203 | 123 | 6 | 115 | 308 | 52 | 246 | 1.59e-19 | 87.4 |
| Msa0140200 | MtrunA17_Chr3g0102631 | 33.520 | 179 | 110 | 5 | 137 | 310 | 1 | 175 | 7.84e-19 | 84.0 |
| Msa0140200 | MtrunA17_Chr3g0102651 | 33.520 | 179 | 110 | 5 | 137 | 310 | 1 | 175 | 7.84e-19 | 84.0 |
| Msa0140200 | MtrunA17_Chr3g0102661 | 33.520 | 179 | 110 | 5 | 137 | 310 | 1 | 175 | 7.84e-19 | 84.0 |
| Msa0140200 | MtrunA17_Chr3g0102671 | 33.520 | 179 | 110 | 5 | 137 | 310 | 1 | 175 | 7.84e-19 | 84.0 |
| Msa0140200 | MtrunA17_Chr5g0418901 | 42.308 | 78 | 45 | 0 | 141 | 218 | 7 | 84 | 3.96e-15 | 70.1 |
| Msa0140200 | MtrunA17_Chr6g0462911 | 30.732 | 205 | 121 | 7 | 114 | 311 | 67 | 257 | 1.14e-14 | 73.9 |
| Msa0140200 | MtrunA17_Chr5g0398791 | 29.452 | 146 | 102 | 1 | 112 | 257 | 27 | 171 | 1.20e-12 | 65.5 |
| Msa0140200 | MtrunA17_Chr1g0161581 | 30.573 | 157 | 94 | 4 | 120 | 275 | 372 | 514 | 7.10e-12 | 66.6 |
| Msa0140200 | MtrunA17_Chr5g0401271 | 33.333 | 132 | 78 | 4 | 118 | 241 | 101 | 230 | 2.33e-11 | 64.3 |
| Msa0140200 | MtrunA17_Chr1g0208231 | 32.484 | 157 | 95 | 6 | 124 | 273 | 111 | 263 | 6.66e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140200 | AT5G43080.1 | 55.682 | 352 | 142 | 4 | 3 | 351 | 12 | 352 | 1.82e-133 | 385 |
| Msa0140200 | AT5G43080.2 | 54.830 | 352 | 140 | 5 | 3 | 351 | 12 | 347 | 1.69e-129 | 375 |
| Msa0140200 | AT1G47210.2 | 52.632 | 361 | 157 | 3 | 3 | 351 | 11 | 369 | 1.53e-127 | 370 |
| Msa0140200 | AT1G47230.1 | 52.632 | 361 | 150 | 4 | 3 | 351 | 11 | 362 | 4.69e-126 | 367 |
| Msa0140200 | AT1G47230.2 | 52.486 | 362 | 150 | 5 | 3 | 351 | 11 | 363 | 4.19e-124 | 362 |
| Msa0140200 | AT1G47220.1 | 56.184 | 283 | 124 | 0 | 69 | 351 | 41 | 323 | 1.66e-108 | 320 |
| Msa0140200 | AT1G44110.1 | 40.909 | 352 | 196 | 4 | 2 | 349 | 114 | 457 | 9.03e-83 | 259 |
| Msa0140200 | AT1G80370.1 | 50.000 | 266 | 130 | 2 | 84 | 349 | 197 | 459 | 1.79e-82 | 258 |
| Msa0140200 | AT5G11300.1 | 50.195 | 257 | 126 | 1 | 84 | 340 | 172 | 426 | 5.60e-81 | 254 |
| Msa0140200 | AT5G25380.3 | 38.642 | 383 | 195 | 5 | 4 | 349 | 56 | 435 | 5.50e-79 | 248 |
| Msa0140200 | AT5G25380.1 | 38.642 | 383 | 195 | 5 | 4 | 349 | 56 | 435 | 5.50e-79 | 248 |
| Msa0140200 | AT5G25380.4 | 47.368 | 266 | 137 | 2 | 84 | 349 | 179 | 441 | 1.53e-78 | 248 |
| Msa0140200 | AT1G15570.1 | 48.120 | 266 | 135 | 2 | 84 | 349 | 188 | 450 | 1.25e-77 | 245 |
| Msa0140200 | AT1G77390.1 | 43.985 | 266 | 147 | 1 | 84 | 349 | 178 | 441 | 1.54e-74 | 237 |
| Msa0140200 | AT5G25380.2 | 37.808 | 365 | 188 | 4 | 4 | 331 | 56 | 418 | 7.25e-74 | 235 |
| Msa0140200 | AT5G11300.2 | 49.550 | 222 | 101 | 2 | 84 | 296 | 172 | 391 | 1.80e-67 | 218 |
| Msa0140200 | AT3G11520.1 | 39.583 | 240 | 135 | 5 | 91 | 329 | 164 | 394 | 1.88e-44 | 158 |
| Msa0140200 | AT1G47210.1 | 47.826 | 184 | 82 | 3 | 3 | 174 | 11 | 192 | 2.46e-44 | 151 |
| Msa0140200 | AT5G06150.1 | 37.255 | 255 | 146 | 6 | 84 | 336 | 182 | 424 | 4.27e-43 | 155 |
| Msa0140200 | AT3G11520.2 | 41.818 | 220 | 118 | 5 | 91 | 309 | 164 | 374 | 7.81e-43 | 153 |
| Msa0140200 | AT2G26760.1 | 38.372 | 258 | 149 | 4 | 84 | 340 | 130 | 378 | 8.34e-42 | 150 |
| Msa0140200 | AT4G37490.1 | 35.496 | 262 | 153 | 5 | 84 | 339 | 165 | 416 | 3.28e-40 | 147 |
| Msa0140200 | AT1G20610.1 | 34.222 | 225 | 142 | 2 | 112 | 336 | 202 | 420 | 3.80e-38 | 141 |
| Msa0140200 | AT1G16330.1 | 29.358 | 327 | 203 | 7 | 30 | 345 | 338 | 647 | 1.72e-37 | 142 |
| Msa0140200 | AT4G35620.1 | 38.496 | 226 | 133 | 2 | 112 | 337 | 197 | 416 | 3.38e-37 | 139 |
| Msa0140200 | AT1G76310.1 | 32.812 | 256 | 162 | 5 | 84 | 338 | 177 | 423 | 1.67e-36 | 137 |
| Msa0140200 | AT2G17620.1 | 35.659 | 258 | 157 | 4 | 84 | 341 | 171 | 419 | 1.93e-35 | 134 |
| Msa0140200 | AT1G76310.2 | 35.268 | 224 | 131 | 7 | 84 | 306 | 177 | 387 | 2.08e-33 | 127 |
| Msa0140200 | AT4G35620.2 | 41.622 | 185 | 99 | 3 | 112 | 296 | 197 | 372 | 2.09e-33 | 127 |
| Msa0140200 | AT1G76310.3 | 30.070 | 286 | 158 | 7 | 84 | 338 | 177 | 451 | 1.67e-31 | 124 |
| Msa0140200 | AT5G06150.2 | 40.645 | 155 | 88 | 3 | 84 | 238 | 182 | 332 | 3.31e-28 | 112 |
| Msa0140200 | AT1G76310.4 | 35.754 | 179 | 106 | 4 | 69 | 246 | 167 | 337 | 2.26e-25 | 105 |
| Msa0140200 | AT1G20590.1 | 35.032 | 157 | 96 | 2 | 148 | 304 | 66 | 216 | 9.46e-24 | 99.0 |
| Msa0140200 | AT1G14750.2 | 31.928 | 166 | 103 | 4 | 114 | 275 | 213 | 372 | 4.82e-14 | 73.2 |
| Msa0140200 | AT1G14750.1 | 31.928 | 166 | 103 | 4 | 114 | 275 | 381 | 540 | 1.37e-13 | 72.4 |
| Msa0140200 | AT1G14750.3 | 31.928 | 166 | 103 | 4 | 114 | 275 | 381 | 540 | 1.49e-13 | 72.0 |
| Msa0140200 | AT1G14750.4 | 32.530 | 166 | 101 | 5 | 114 | 275 | 213 | 371 | 6.18e-13 | 69.7 |
| Msa0140200 | AT1G34460.5 | 27.228 | 202 | 121 | 6 | 34 | 234 | 222 | 398 | 2.92e-11 | 65.1 |
| Msa0140200 | AT1G34460.6 | 27.228 | 202 | 121 | 6 | 34 | 234 | 222 | 398 | 3.02e-11 | 65.1 |
| Msa0140200 | AT1G34460.3 | 27.228 | 202 | 121 | 6 | 34 | 234 | 222 | 398 | 3.02e-11 | 65.1 |
| Msa0140200 | AT1G34460.8 | 27.228 | 202 | 121 | 6 | 34 | 234 | 222 | 398 | 3.02e-11 | 65.1 |
| Msa0140200 | AT1G34460.1 | 27.228 | 202 | 121 | 6 | 34 | 234 | 222 | 398 | 3.02e-11 | 65.1 |
| Msa0140200 | AT1G34460.2 | 29.268 | 164 | 92 | 4 | 71 | 234 | 256 | 395 | 3.06e-11 | 64.7 |
| Msa0140200 | AT1G34460.4 | 29.268 | 164 | 92 | 4 | 71 | 234 | 256 | 395 | 3.06e-11 | 64.7 |
| Msa0140200 | AT1G34460.7 | 27.228 | 202 | 121 | 6 | 34 | 234 | 222 | 398 | 3.28e-11 | 64.7 |
| Msa0140200 | AT1G34460.9 | 29.268 | 164 | 92 | 4 | 71 | 234 | 245 | 384 | 3.38e-11 | 64.7 |
Find 84 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTAATGATTCGGTATTTC+TGG | 0.133993 | 1_3:-74379228 | None:intergenic |
| AACATTGAGATTTGGTAAAT+TGG | 0.141731 | 1_3:-74377600 | None:intergenic |
| ATCTCTATCTCTCTCCTTTC+AGG | 0.162168 | 1_3:+74377459 | None:intergenic |
| TATAAGATTCTTGCCTTCTA+TGG | 0.225037 | 1_3:+74378788 | Msa0140200:CDS |
| CGAAAAGCATCAGATTTCTT+TGG | 0.242110 | 1_3:-74377656 | None:intergenic |
| AATGAAGGAAATGTTGTCTT+AGG | 0.248161 | 1_3:+74379300 | Msa0140200:three_prime_UTR |
| TTCTTCAAAGCTTGGGGTTT+AGG | 0.269795 | 1_3:-74377626 | None:intergenic |
| AAAACTTATCCTAGGAAAAT+AGG | 0.271109 | 1_3:-74379515 | None:intergenic |
| TGTGTTTCAGGGAGTTTATT+GGG | 0.316830 | 1_3:+74378579 | Msa0140200:intron |
| TTGTGTTTCAGGGAGTTTAT+TGG | 0.330833 | 1_3:+74378578 | Msa0140200:intron |
| CTTAAGATTCTTCAAAGCTT+GGG | 0.349798 | 1_3:-74377633 | None:intergenic |
| CTGCATCATTGAAAGCTGTT+AGG | 0.351797 | 1_3:+74379063 | Msa0140200:CDS |
| TTAGGAGAAACATTGAGATT+TGG | 0.357415 | 1_3:-74377608 | None:intergenic |
| CTTAGGGGTTAAGTGGTGTT+TGG | 0.357548 | 1_3:+74379317 | Msa0140200:three_prime_UTR |
| TGCAAATATGAGAGGGATAC+TGG | 0.359853 | 1_3:+74377960 | Msa0140200:CDS |
| ACATTGAGATTTGGTAAATT+GGG | 0.388776 | 1_3:-74377599 | None:intergenic |
| ACTGGTGGATTGGTTGGTTG+AGG | 0.392164 | 1_3:+74377978 | Msa0140200:CDS |
| CTCCATTGAGCGAAGATAGT+TGG | 0.398802 | 1_3:-74377777 | None:intergenic |
| AGCCTTAGGCAAAATATGTT+TGG | 0.399752 | 1_3:+74379354 | Msa0140200:three_prime_UTR |
| ATGAAGGAAATGTTGTCTTA+GGG | 0.408012 | 1_3:+74379301 | Msa0140200:three_prime_UTR |
| ATTTACCTGTTTCAGCTCAT+AGG | 0.414612 | 1_3:-74378282 | None:intergenic |
| TTCCAACTATCTTCGCTCAA+TGG | 0.418966 | 1_3:+74377775 | Msa0140200:CDS |
| TTCTCAATGTAACCAATCAT+TGG | 0.419188 | 1_3:-74377919 | None:intergenic |
| AAATAGGTTGTGTATAAAGT+TGG | 0.419997 | 1_3:-74379499 | None:intergenic |
| TCAGACTTCAAAATTGCAAA+TGG | 0.420778 | 1_3:+74378716 | Msa0140200:intron |
| CATAGGTGTTATCAGTAATC+TGG | 0.421415 | 1_3:-74378265 | None:intergenic |
| ATGATTTGTATTTGGTAAGA+AGG | 0.426700 | 1_3:+74379039 | Msa0140200:CDS |
| AGGGATACTGGTGGATTGGT+TGG | 0.431112 | 1_3:+74377972 | Msa0140200:CDS |
| GCTTAAGATTCTTCAAAGCT+TGG | 0.433122 | 1_3:-74377634 | None:intergenic |
| ACAGATGCAGCCACCATAGA+AGG | 0.440042 | 1_3:-74378801 | None:intergenic |
| TCCATCTCAGCTCAGGTTGA+AGG | 0.443749 | 1_3:-74377494 | None:intergenic |
| TCTTCTTCAAAGTAATGATT+CGG | 0.449568 | 1_3:-74379237 | None:intergenic |
| TTTGAAGTGGACTGTAATGA+AGG | 0.452098 | 1_3:+74379285 | Msa0140200:three_prime_UTR |
| AACCTGGATCTCTGTGCATA+TGG | 0.453964 | 1_3:+74379392 | Msa0140200:three_prime_UTR |
| AACCATATGCACAGAGATCC+AGG | 0.460423 | 1_3:-74379394 | None:intergenic |
| CCCTTCAACCTGAGCTGAGA+TGG | 0.468658 | 1_3:+74377493 | Msa0140200:exon |
| TCTGTCCTGGAGTACATCCT+TGG | 0.470472 | 1_3:+74378847 | Msa0140200:CDS |
| AGATCTAAGCTTCAATTGCT+TGG | 0.471495 | 1_3:+74378087 | Msa0140200:CDS |
| CTGTCCTGGAGTACATCCTT+GGG | 0.473386 | 1_3:+74378848 | Msa0140200:CDS |
| TAACACCTATGAGCTGAAAC+AGG | 0.475070 | 1_3:+74378277 | Msa0140200:CDS |
| TGGCAGAAATCAACAGCCTT+AGG | 0.476524 | 1_3:-74378245 | None:intergenic |
| TTATAAATCTGCTGAGTTGG+AGG | 0.476698 | 1_3:+74378998 | Msa0140200:CDS |
| TTCGGTATTTCTGGTGATGA+AGG | 0.481066 | 1_3:-74379219 | None:intergenic |
| AGATGGAGACTCGTGCTTCA+AGG | 0.481168 | 1_3:+74377510 | Msa0140200:exon |
| ACGAGTCTCCATCTCAGCTC+AGG | 0.484546 | 1_3:-74377501 | None:intergenic |
| CTTAGGCAAAATATGTTTGG+TGG | 0.488389 | 1_3:+74379357 | Msa0140200:three_prime_UTR |
| TGATTTGTATTTGGTAAGAA+GGG | 0.489410 | 1_3:+74379040 | Msa0140200:CDS |
| ATGTTGTCTTAGGGGTTAAG+TGG | 0.494512 | 1_3:+74379310 | Msa0140200:three_prime_UTR |
| TGCATCATTGAAAGCTGTTA+GGG | 0.496113 | 1_3:+74379064 | Msa0140200:CDS |
| GTCTGCTACTGAAGATCTAA+AGG | 0.501507 | 1_3:+74378601 | Msa0140200:CDS |
| TTTGAAACAGTTCAAGAATG+TGG | 0.504612 | 1_3:+74379188 | Msa0140200:intron |
| TGAGAGGGATACTGGTGGAT+TGG | 0.508165 | 1_3:+74377968 | Msa0140200:CDS |
| TGTATGAAACAGCAAGATGA+AGG | 0.514862 | 1_3:-74378032 | None:intergenic |
| AAGATTCTTGCCTTCTATGG+TGG | 0.516025 | 1_3:+74378791 | Msa0140200:CDS |
| TTGGAAATATCAGCTGCATA+AGG | 0.517296 | 1_3:-74377758 | None:intergenic |
| CAATCAACTTAGTTAGCCTT+AGG | 0.517628 | 1_3:+74379340 | Msa0140200:three_prime_UTR |
| GCTAGATTCATAATCTGTCC+TGG | 0.524506 | 1_3:+74378834 | Msa0140200:CDS |
| AGACTCGTGCTTCAAGGAAG+AGG | 0.525994 | 1_3:+74377516 | Msa0140200:CDS |
| ACAGCAAGATGAAGGGTTTG+AGG | 0.530736 | 1_3:-74378024 | None:intergenic |
| CCATCTCAGCTCAGGTTGAA+GGG | 0.541803 | 1_3:-74377493 | None:intergenic |
| GTATTTCTGGTGATGAAGGA+AGG | 0.551734 | 1_3:-74379215 | None:intergenic |
| TTAAGATTCTTCAAAGCTTG+GGG | 0.554495 | 1_3:-74377632 | None:intergenic |
| TGAAGAAATCTCCCCACCTA+AGG | 0.559560 | 1_3:+74378229 | Msa0140200:CDS |
| GTGGCTTAGATACTTGAACC+TGG | 0.560340 | 1_3:+74379376 | Msa0140200:three_prime_UTR |
| GGTAGTATTACAAATTGTGA+TGG | 0.560780 | 1_3:+74379462 | Msa0140200:three_prime_UTR |
| ATCTTACGATGCAATGAGCA+TGG | 0.562094 | 1_3:-74378118 | None:intergenic |
| TTTAGAAAAGTGTTAACATG+AGG | 0.564833 | 1_3:-74378469 | None:intergenic |
| TTAGAAAAGTGTTAACATGA+GGG | 0.569090 | 1_3:-74378468 | None:intergenic |
| CAGAAATCAACAGCCTTAGG+TGG | 0.572140 | 1_3:-74378242 | None:intergenic |
| TTTACCCAAGGATGTACTCC+AGG | 0.572732 | 1_3:-74378852 | None:intergenic |
| GTTCGTGTAGGTCATTAAGA+TGG | 0.575091 | 1_3:+74378405 | Msa0140200:intron |
| AGAAATCAACAGCCTTAGGT+GGG | 0.577007 | 1_3:-74378241 | None:intergenic |
| TGTTGACAGACTCATTAGAC+AGG | 0.583886 | 1_3:-74378065 | None:intergenic |
| TGAAGGAAATGTTGTCTTAG+GGG | 0.586696 | 1_3:+74379302 | Msa0140200:three_prime_UTR |
| GACTCGTGCTTCAAGGAAGA+GGG | 0.598522 | 1_3:+74377517 | Msa0140200:CDS |
| CAACTATCTTCGCTCAATGG+AGG | 0.603706 | 1_3:+74377778 | Msa0140200:CDS |
| GGTGTTACTGCAAATATGAG+AGG | 0.608167 | 1_3:+74377952 | Msa0140200:CDS |
| TACATTGAGAAAGTTCAAAG+AGG | 0.622312 | 1_3:+74377931 | Msa0140200:CDS |
| GGGAAGAGATGAAACCTGAA+AGG | 0.628908 | 1_3:-74377473 | None:intergenic |
| GTGTTACTGCAAATATGAGA+GGG | 0.631608 | 1_3:+74377953 | Msa0140200:CDS |
| GTATGAAACAGCAAGATGAA+GGG | 0.636902 | 1_3:-74378031 | None:intergenic |
| GAAATCAACAGCCTTAGGTG+GGG | 0.656360 | 1_3:-74378240 | None:intergenic |
| GGAGAAATACAAGCAACACA+AGG | 0.682277 | 1_3:+74379085 | Msa0140200:CDS |
| AAATATGAGAGGGATACTGG+TGG | 0.717057 | 1_3:+74377963 | Msa0140200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTACAATTCA+TGG | + | chr1_3:74377838-74377857 | Msa0140200:intron | 10.0% |
| !!! | TTTTTTTTTTTACAATTCAT+GGG | + | chr1_3:74377839-74377858 | Msa0140200:intron | 10.0% |
| !!! | TTTTTAGTTTTTTGAATTTT+TGG | + | chr1_3:74377862-74377881 | Msa0140200:intron | 10.0% |
| !!! | TTTTTTTTTTTTACAATTCA+TGG | + | chr1_3:74377838-74377857 | Msa0140200:intron | 10.0% |
| !!! | TTTTTTTTTTTACAATTCAT+GGG | + | chr1_3:74377839-74377858 | Msa0140200:intron | 10.0% |
| !!! | TTTTTAGTTTTTTGAATTTT+TGG | + | chr1_3:74377862-74377881 | Msa0140200:intron | 10.0% |
| !! | AATTCAAACAAGAAAAAAAT+CGG | - | chr1_3:74378335-74378354 | None:intergenic | 15.0% |
| !!! | CAATTTTTTAAAGAAACAAA+TGG | - | chr1_3:74378904-74378923 | None:intergenic | 15.0% |
| !! | ATATTAACTATAACAAAGAA+AGG | - | chr1_3:74379123-74379142 | None:intergenic | 15.0% |
| !! | AATTCAAACAAGAAAAAAAT+CGG | - | chr1_3:74378335-74378354 | None:intergenic | 15.0% |
| !!! | CAATTTTTTAAAGAAACAAA+TGG | - | chr1_3:74378904-74378923 | None:intergenic | 15.0% |
| !! | ATATTAACTATAACAAAGAA+AGG | - | chr1_3:74379123-74379142 | None:intergenic | 15.0% |
| !!! | TTTTTGTTGTTAAGAACAAT+TGG | - | chr1_3:74377554-74377573 | None:intergenic | 20.0% |
| !! | TTCTTAACAACAAAAAACAA+AGG | + | chr1_3:74377558-74377577 | Msa0140200:CDS | 20.0% |
| !! | TCTTAACAACAAAAAACAAA+GGG | + | chr1_3:74377559-74377578 | Msa0140200:CDS | 20.0% |
| !!! | TAAGTCATTGAATTTTGAAA+TGG | + | chr1_3:74378441-74378460 | Msa0140200:CDS | 20.0% |
| !!! | AAGTCATTGAATTTTGAAAT+GGG | + | chr1_3:74378442-74378461 | Msa0140200:CDS | 20.0% |
| !!! | GATTTTACATGATTTGTATT+TGG | + | chr1_3:74379031-74379050 | Msa0140200:CDS | 20.0% |
| !! | TGTTATAGTTAATATATAGC+TGG | + | chr1_3:74379128-74379147 | Msa0140200:intron | 20.0% |
| !!! | ACTTAATTACTCATTTTGTT+TGG | + | chr1_3:74379417-74379436 | Msa0140200:three_prime_UTR | 20.0% |
| !!! | TTTTTGTTGTTAAGAACAAT+TGG | - | chr1_3:74377554-74377573 | None:intergenic | 20.0% |
| !! | TTCTTAACAACAAAAAACAA+AGG | + | chr1_3:74377558-74377577 | Msa0140200:CDS | 20.0% |
| !! | TCTTAACAACAAAAAACAAA+GGG | + | chr1_3:74377559-74377578 | Msa0140200:CDS | 20.0% |
| !!! | TAAGTCATTGAATTTTGAAA+TGG | + | chr1_3:74378441-74378460 | Msa0140200:CDS | 20.0% |
| !!! | AAGTCATTGAATTTTGAAAT+GGG | + | chr1_3:74378442-74378461 | Msa0140200:CDS | 20.0% |
| !!! | GATTTTACATGATTTGTATT+TGG | + | chr1_3:74379031-74379050 | Msa0140200:CDS | 20.0% |
| !! | TGTTATAGTTAATATATAGC+TGG | + | chr1_3:74379128-74379147 | Msa0140200:intron | 20.0% |
| !!! | ACTTAATTACTCATTTTGTT+TGG | + | chr1_3:74379417-74379436 | Msa0140200:three_prime_UTR | 20.0% |
| !!! | AAAAAACAAAGGGTTGTTTT+GGG | + | chr1_3:74377569-74377588 | Msa0140200:CDS | 25.0% |
| !! | ACATTGAGATTTGGTAAATT+GGG | - | chr1_3:74377602-74377621 | None:intergenic | 25.0% |
| !! | AACATTGAGATTTGGTAAAT+TGG | - | chr1_3:74377603-74377622 | None:intergenic | 25.0% |
| !!! | TTAGAAAAGTGTTAACATGA+GGG | - | chr1_3:74378471-74378490 | None:intergenic | 25.0% |
| !!! | TTTAGAAAAGTGTTAACATG+AGG | - | chr1_3:74378472-74378491 | None:intergenic | 25.0% |
| !!! | GTTAACACTTTTCTAAAGTA+AGG | + | chr1_3:74378475-74378494 | Msa0140200:intron | 25.0% |
| ! | CAATTAACTTCATTTCAACA+AGG | - | chr1_3:74378533-74378552 | None:intergenic | 25.0% |
| ! | CTTGTTGAAATGAAGTTAAT+TGG | + | chr1_3:74378531-74378550 | Msa0140200:intron | 25.0% |
| ! | TAACATCAAATATTTACCCA+AGG | - | chr1_3:74378867-74378886 | None:intergenic | 25.0% |
| !! | ATGATTTGTATTTGGTAAGA+AGG | + | chr1_3:74379039-74379058 | Msa0140200:CDS | 25.0% |
| !! | TGATTTGTATTTGGTAAGAA+GGG | + | chr1_3:74379040-74379059 | Msa0140200:CDS | 25.0% |
| ! | TCTTCTTCAAAGTAATGATT+CGG | - | chr1_3:74379240-74379259 | None:intergenic | 25.0% |
| ! | AAATAGGTTGTGTATAAAGT+TGG | - | chr1_3:74379502-74379521 | None:intergenic | 25.0% |
| ! | AAAACTTATCCTAGGAAAAT+AGG | - | chr1_3:74379518-74379537 | None:intergenic | 25.0% |
| !! | TTTCTCTAAAAACTTATCCT+AGG | - | chr1_3:74379526-74379545 | None:intergenic | 25.0% |
| !!! | AAAAAACAAAGGGTTGTTTT+GGG | + | chr1_3:74377569-74377588 | Msa0140200:CDS | 25.0% |
| !! | ACATTGAGATTTGGTAAATT+GGG | - | chr1_3:74377602-74377621 | None:intergenic | 25.0% |
| !! | AACATTGAGATTTGGTAAAT+TGG | - | chr1_3:74377603-74377622 | None:intergenic | 25.0% |
| !!! | TTAGAAAAGTGTTAACATGA+GGG | - | chr1_3:74378471-74378490 | None:intergenic | 25.0% |
| !!! | TTTAGAAAAGTGTTAACATG+AGG | - | chr1_3:74378472-74378491 | None:intergenic | 25.0% |
| !!! | GTTAACACTTTTCTAAAGTA+AGG | + | chr1_3:74378475-74378494 | Msa0140200:intron | 25.0% |
| ! | CAATTAACTTCATTTCAACA+AGG | - | chr1_3:74378533-74378552 | None:intergenic | 25.0% |
| ! | CTTGTTGAAATGAAGTTAAT+TGG | + | chr1_3:74378531-74378550 | Msa0140200:intron | 25.0% |
| ! | TAACATCAAATATTTACCCA+AGG | - | chr1_3:74378867-74378886 | None:intergenic | 25.0% |
| !! | ATGATTTGTATTTGGTAAGA+AGG | + | chr1_3:74379039-74379058 | Msa0140200:CDS | 25.0% |
| !! | TGATTTGTATTTGGTAAGAA+GGG | + | chr1_3:74379040-74379059 | Msa0140200:CDS | 25.0% |
| ! | TCTTCTTCAAAGTAATGATT+CGG | - | chr1_3:74379240-74379259 | None:intergenic | 25.0% |
| ! | AAATAGGTTGTGTATAAAGT+TGG | - | chr1_3:74379502-74379521 | None:intergenic | 25.0% |
| ! | AAAACTTATCCTAGGAAAAT+AGG | - | chr1_3:74379518-74379537 | None:intergenic | 25.0% |
| !! | TTTCTCTAAAAACTTATCCT+AGG | - | chr1_3:74379526-74379545 | None:intergenic | 25.0% |
| ! | CAAAAAACAAAGGGTTGTTT+TGG | + | chr1_3:74377568-74377587 | Msa0140200:CDS | 30.0% |
| TTAGGAGAAACATTGAGATT+TGG | - | chr1_3:74377611-74377630 | None:intergenic | 30.0% | |
| TTAAGATTCTTCAAAGCTTG+GGG | - | chr1_3:74377635-74377654 | None:intergenic | 30.0% | |
| CTTAAGATTCTTCAAAGCTT+GGG | - | chr1_3:74377636-74377655 | None:intergenic | 30.0% | |
| !!! | TTTTGGTTTGATTGTTTCTC+AGG | + | chr1_3:74377879-74377898 | Msa0140200:intron | 30.0% |
| AAAAAGAGAAGACCAATGAT+TGG | + | chr1_3:74377907-74377926 | Msa0140200:CDS | 30.0% | |
| TTCTCAATGTAACCAATCAT+TGG | - | chr1_3:74377922-74377941 | None:intergenic | 30.0% | |
| TACATTGAGAAAGTTCAAAG+AGG | + | chr1_3:74377931-74377950 | Msa0140200:CDS | 30.0% | |
| AGTAGATTTCATTTAATCCC+AGG | + | chr1_3:74378355-74378374 | Msa0140200:intron | 30.0% | |
| GTAGATTTCATTTAATCCCA+GGG | + | chr1_3:74378356-74378375 | Msa0140200:intron | 30.0% | |
| TAGATTTCATTTAATCCCAG+GGG | + | chr1_3:74378357-74378376 | Msa0140200:intron | 30.0% | |
| ATTATAAACAAAAGACCCCT+GGG | - | chr1_3:74378375-74378394 | None:intergenic | 30.0% | |
| ATGTTAATTGATGTTCGTGT+AGG | + | chr1_3:74378393-74378412 | Msa0140200:intron | 30.0% | |
| ATGTGCAATAATTGTGTTTC+AGG | + | chr1_3:74378567-74378586 | Msa0140200:intron | 30.0% | |
| TGTGCAATAATTGTGTTTCA+GGG | + | chr1_3:74378568-74378587 | Msa0140200:intron | 30.0% | |
| TCAGACTTCAAAATTGCAAA+TGG | + | chr1_3:74378716-74378735 | Msa0140200:intron | 30.0% | |
| TATAAGATTCTTGCCTTCTA+TGG | + | chr1_3:74378788-74378807 | Msa0140200:CDS | 30.0% | |
| ! | GTTTTATAAATCTGCTGAGT+TGG | + | chr1_3:74378995-74379014 | Msa0140200:CDS | 30.0% |
| ! | TTTGAAACAGTTCAAGAATG+TGG | + | chr1_3:74379188-74379207 | Msa0140200:intron | 30.0% |
| !! | AAGTAATGATTCGGTATTTC+TGG | - | chr1_3:74379231-74379250 | None:intergenic | 30.0% |
| !! | ATCTAGAGTACTTTTTGAAG+TGG | + | chr1_3:74379272-74379291 | Msa0140200:three_prime_UTR | 30.0% |
| AATGAAGGAAATGTTGTCTT+AGG | + | chr1_3:74379300-74379319 | Msa0140200:three_prime_UTR | 30.0% | |
| ATGAAGGAAATGTTGTCTTA+GGG | + | chr1_3:74379301-74379320 | Msa0140200:three_prime_UTR | 30.0% | |
| ! | TATCTCTTTTGATACTAGTC+TGG | + | chr1_3:74379441-74379460 | Msa0140200:three_prime_UTR | 30.0% |
| GGTAGTATTACAAATTGTGA+TGG | + | chr1_3:74379462-74379481 | Msa0140200:three_prime_UTR | 30.0% | |
| ! | TATACACAACCTATTTTCCT+AGG | + | chr1_3:74379506-74379525 | Msa0140200:three_prime_UTR | 30.0% |
| ! | CAAAAAACAAAGGGTTGTTT+TGG | + | chr1_3:74377568-74377587 | Msa0140200:CDS | 30.0% |
| TTAGGAGAAACATTGAGATT+TGG | - | chr1_3:74377611-74377630 | None:intergenic | 30.0% | |
| TTAAGATTCTTCAAAGCTTG+GGG | - | chr1_3:74377635-74377654 | None:intergenic | 30.0% | |
| CTTAAGATTCTTCAAAGCTT+GGG | - | chr1_3:74377636-74377655 | None:intergenic | 30.0% | |
| !!! | TTTTGGTTTGATTGTTTCTC+AGG | + | chr1_3:74377879-74377898 | Msa0140200:intron | 30.0% |
| AAAAAGAGAAGACCAATGAT+TGG | + | chr1_3:74377907-74377926 | Msa0140200:CDS | 30.0% | |
| TTCTCAATGTAACCAATCAT+TGG | - | chr1_3:74377922-74377941 | None:intergenic | 30.0% | |
| TACATTGAGAAAGTTCAAAG+AGG | + | chr1_3:74377931-74377950 | Msa0140200:CDS | 30.0% | |
| AGTAGATTTCATTTAATCCC+AGG | + | chr1_3:74378355-74378374 | Msa0140200:intron | 30.0% | |
| GTAGATTTCATTTAATCCCA+GGG | + | chr1_3:74378356-74378375 | Msa0140200:intron | 30.0% | |
| TAGATTTCATTTAATCCCAG+GGG | + | chr1_3:74378357-74378376 | Msa0140200:intron | 30.0% | |
| ATTATAAACAAAAGACCCCT+GGG | - | chr1_3:74378375-74378394 | None:intergenic | 30.0% | |
| ATGTTAATTGATGTTCGTGT+AGG | + | chr1_3:74378393-74378412 | Msa0140200:intron | 30.0% | |
| ATGTGCAATAATTGTGTTTC+AGG | + | chr1_3:74378567-74378586 | Msa0140200:intron | 30.0% | |
| TGTGCAATAATTGTGTTTCA+GGG | + | chr1_3:74378568-74378587 | Msa0140200:intron | 30.0% | |
| TCAGACTTCAAAATTGCAAA+TGG | + | chr1_3:74378716-74378735 | Msa0140200:intron | 30.0% | |
| TATAAGATTCTTGCCTTCTA+TGG | + | chr1_3:74378788-74378807 | Msa0140200:CDS | 30.0% | |
| ! | GTTTTATAAATCTGCTGAGT+TGG | + | chr1_3:74378995-74379014 | Msa0140200:CDS | 30.0% |
| ! | TTTGAAACAGTTCAAGAATG+TGG | + | chr1_3:74379188-74379207 | Msa0140200:intron | 30.0% |
| !! | AAGTAATGATTCGGTATTTC+TGG | - | chr1_3:74379231-74379250 | None:intergenic | 30.0% |
| !! | ATCTAGAGTACTTTTTGAAG+TGG | + | chr1_3:74379272-74379291 | Msa0140200:three_prime_UTR | 30.0% |
| AATGAAGGAAATGTTGTCTT+AGG | + | chr1_3:74379300-74379319 | Msa0140200:three_prime_UTR | 30.0% | |
| ATGAAGGAAATGTTGTCTTA+GGG | + | chr1_3:74379301-74379320 | Msa0140200:three_prime_UTR | 30.0% | |
| ! | TATCTCTTTTGATACTAGTC+TGG | + | chr1_3:74379441-74379460 | Msa0140200:three_prime_UTR | 30.0% |
| GGTAGTATTACAAATTGTGA+TGG | + | chr1_3:74379462-74379481 | Msa0140200:three_prime_UTR | 30.0% | |
| ! | TATACACAACCTATTTTCCT+AGG | + | chr1_3:74379506-74379525 | Msa0140200:three_prime_UTR | 30.0% |
| GCTTAAGATTCTTCAAAGCT+TGG | - | chr1_3:74377637-74377656 | None:intergenic | 35.0% | |
| !! | CGAAAAGCATCAGATTTCTT+TGG | - | chr1_3:74377659-74377678 | None:intergenic | 35.0% |
| !! | GATGCTTTTCGTTTGTTTTC+TGG | + | chr1_3:74377668-74377687 | Msa0140200:CDS | 35.0% |
| !!! | GCATTGTTTTTGCTGAAATC+TGG | - | chr1_3:74377710-74377729 | None:intergenic | 35.0% |
| TTGGAAATATCAGCTGCATA+AGG | - | chr1_3:74377761-74377780 | None:intergenic | 35.0% | |
| ! | GTGTTACTGCAAATATGAGA+GGG | + | chr1_3:74377953-74377972 | Msa0140200:CDS | 35.0% |
| GTATGAAACAGCAAGATGAA+GGG | - | chr1_3:74378034-74378053 | None:intergenic | 35.0% | |
| TGTATGAAACAGCAAGATGA+AGG | - | chr1_3:74378035-74378054 | None:intergenic | 35.0% | |
| AGATCTAAGCTTCAATTGCT+TGG | + | chr1_3:74378087-74378106 | Msa0140200:CDS | 35.0% | |
| ! | CATAGGTGTTATCAGTAATC+TGG | - | chr1_3:74378268-74378287 | None:intergenic | 35.0% |
| ATTTACCTGTTTCAGCTCAT+AGG | - | chr1_3:74378285-74378304 | None:intergenic | 35.0% | |
| CATTATAAACAAAAGACCCC+TGG | - | chr1_3:74378376-74378395 | None:intergenic | 35.0% | |
| TTGTGTTTCAGGGAGTTTAT+TGG | + | chr1_3:74378578-74378597 | Msa0140200:intron | 35.0% | |
| TGTGTTTCAGGGAGTTTATT+GGG | + | chr1_3:74378579-74378598 | Msa0140200:intron | 35.0% | |
| ! | TTATAAATCTGCTGAGTTGG+AGG | + | chr1_3:74378998-74379017 | Msa0140200:CDS | 35.0% |
| TGCATCATTGAAAGCTGTTA+GGG | + | chr1_3:74379064-74379083 | Msa0140200:CDS | 35.0% | |
| !! | TTTGAAGTGGACTGTAATGA+AGG | + | chr1_3:74379285-74379304 | Msa0140200:three_prime_UTR | 35.0% |
| TGAAGGAAATGTTGTCTTAG+GGG | + | chr1_3:74379302-74379321 | Msa0140200:three_prime_UTR | 35.0% | |
| !! | CAATCAACTTAGTTAGCCTT+AGG | + | chr1_3:74379340-74379359 | Msa0140200:three_prime_UTR | 35.0% |
| AGCCTTAGGCAAAATATGTT+TGG | + | chr1_3:74379354-74379373 | Msa0140200:three_prime_UTR | 35.0% | |
| ! | CACCAAACATATTTTGCCTA+AGG | - | chr1_3:74379359-74379378 | None:intergenic | 35.0% |
| CTTAGGCAAAATATGTTTGG+TGG | + | chr1_3:74379357-74379376 | Msa0140200:three_prime_UTR | 35.0% | |
| GCTTAAGATTCTTCAAAGCT+TGG | - | chr1_3:74377637-74377656 | None:intergenic | 35.0% | |
| !! | CGAAAAGCATCAGATTTCTT+TGG | - | chr1_3:74377659-74377678 | None:intergenic | 35.0% |
| !! | GATGCTTTTCGTTTGTTTTC+TGG | + | chr1_3:74377668-74377687 | Msa0140200:CDS | 35.0% |
| !!! | GCATTGTTTTTGCTGAAATC+TGG | - | chr1_3:74377710-74377729 | None:intergenic | 35.0% |
| TTGGAAATATCAGCTGCATA+AGG | - | chr1_3:74377761-74377780 | None:intergenic | 35.0% | |
| ! | GTGTTACTGCAAATATGAGA+GGG | + | chr1_3:74377953-74377972 | Msa0140200:CDS | 35.0% |
| GTATGAAACAGCAAGATGAA+GGG | - | chr1_3:74378034-74378053 | None:intergenic | 35.0% | |
| TGTATGAAACAGCAAGATGA+AGG | - | chr1_3:74378035-74378054 | None:intergenic | 35.0% | |
| AGATCTAAGCTTCAATTGCT+TGG | + | chr1_3:74378087-74378106 | Msa0140200:CDS | 35.0% | |
| ! | CATAGGTGTTATCAGTAATC+TGG | - | chr1_3:74378268-74378287 | None:intergenic | 35.0% |
| ATTTACCTGTTTCAGCTCAT+AGG | - | chr1_3:74378285-74378304 | None:intergenic | 35.0% | |
| CATTATAAACAAAAGACCCC+TGG | - | chr1_3:74378376-74378395 | None:intergenic | 35.0% | |
| TTGTGTTTCAGGGAGTTTAT+TGG | + | chr1_3:74378578-74378597 | Msa0140200:intron | 35.0% | |
| TGTGTTTCAGGGAGTTTATT+GGG | + | chr1_3:74378579-74378598 | Msa0140200:intron | 35.0% | |
| ! | TTATAAATCTGCTGAGTTGG+AGG | + | chr1_3:74378998-74379017 | Msa0140200:CDS | 35.0% |
| TGCATCATTGAAAGCTGTTA+GGG | + | chr1_3:74379064-74379083 | Msa0140200:CDS | 35.0% | |
| !! | TTTGAAGTGGACTGTAATGA+AGG | + | chr1_3:74379285-74379304 | Msa0140200:three_prime_UTR | 35.0% |
| TGAAGGAAATGTTGTCTTAG+GGG | + | chr1_3:74379302-74379321 | Msa0140200:three_prime_UTR | 35.0% | |
| !! | CAATCAACTTAGTTAGCCTT+AGG | + | chr1_3:74379340-74379359 | Msa0140200:three_prime_UTR | 35.0% |
| AGCCTTAGGCAAAATATGTT+TGG | + | chr1_3:74379354-74379373 | Msa0140200:three_prime_UTR | 35.0% | |
| ! | CACCAAACATATTTTGCCTA+AGG | - | chr1_3:74379359-74379378 | None:intergenic | 35.0% |
| CTTAGGCAAAATATGTTTGG+TGG | + | chr1_3:74379357-74379376 | Msa0140200:three_prime_UTR | 35.0% | |
| TTCTTCAAAGCTTGGGGTTT+AGG | - | chr1_3:74377629-74377648 | None:intergenic | 40.0% | |
| TTCCAACTATCTTCGCTCAA+TGG | + | chr1_3:74377775-74377794 | Msa0140200:CDS | 40.0% | |
| !! | GGTGTTACTGCAAATATGAG+AGG | + | chr1_3:74377952-74377971 | Msa0140200:CDS | 40.0% |
| TGCAAATATGAGAGGGATAC+TGG | + | chr1_3:74377960-74377979 | Msa0140200:CDS | 40.0% | |
| AAATATGAGAGGGATACTGG+TGG | + | chr1_3:74377963-74377982 | Msa0140200:CDS | 40.0% | |
| TGTTGACAGACTCATTAGAC+AGG | - | chr1_3:74378068-74378087 | None:intergenic | 40.0% | |
| ATCTTACGATGCAATGAGCA+TGG | - | chr1_3:74378121-74378140 | None:intergenic | 40.0% | |
| AGAAATCAACAGCCTTAGGT+GGG | - | chr1_3:74378244-74378263 | None:intergenic | 40.0% | |
| TAACACCTATGAGCTGAAAC+AGG | + | chr1_3:74378277-74378296 | Msa0140200:CDS | 40.0% | |
| GTTCGTGTAGGTCATTAAGA+TGG | + | chr1_3:74378405-74378424 | Msa0140200:intron | 40.0% | |
| GTCTGCTACTGAAGATCTAA+AGG | + | chr1_3:74378601-74378620 | Msa0140200:CDS | 40.0% | |
| AAGATTCTTGCCTTCTATGG+TGG | + | chr1_3:74378791-74378810 | Msa0140200:CDS | 40.0% | |
| GCTAGATTCATAATCTGTCC+TGG | + | chr1_3:74378834-74378853 | Msa0140200:CDS | 40.0% | |
| CTGCATCATTGAAAGCTGTT+AGG | + | chr1_3:74379063-74379082 | Msa0140200:CDS | 40.0% | |
| GGAGAAATACAAGCAACACA+AGG | + | chr1_3:74379085-74379104 | Msa0140200:CDS | 40.0% | |
| !! | GTATTTCTGGTGATGAAGGA+AGG | - | chr1_3:74379218-74379237 | None:intergenic | 40.0% |
| !! | TTCGGTATTTCTGGTGATGA+AGG | - | chr1_3:74379222-74379241 | None:intergenic | 40.0% |
| ATGTTGTCTTAGGGGTTAAG+TGG | + | chr1_3:74379310-74379329 | Msa0140200:three_prime_UTR | 40.0% | |
| TTCTTCAAAGCTTGGGGTTT+AGG | - | chr1_3:74377629-74377648 | None:intergenic | 40.0% | |
| TTCCAACTATCTTCGCTCAA+TGG | + | chr1_3:74377775-74377794 | Msa0140200:CDS | 40.0% | |
| !! | GGTGTTACTGCAAATATGAG+AGG | + | chr1_3:74377952-74377971 | Msa0140200:CDS | 40.0% |
| TGCAAATATGAGAGGGATAC+TGG | + | chr1_3:74377960-74377979 | Msa0140200:CDS | 40.0% | |
| AAATATGAGAGGGATACTGG+TGG | + | chr1_3:74377963-74377982 | Msa0140200:CDS | 40.0% | |
| TGTTGACAGACTCATTAGAC+AGG | - | chr1_3:74378068-74378087 | None:intergenic | 40.0% | |
| ATCTTACGATGCAATGAGCA+TGG | - | chr1_3:74378121-74378140 | None:intergenic | 40.0% | |
| AGAAATCAACAGCCTTAGGT+GGG | - | chr1_3:74378244-74378263 | None:intergenic | 40.0% | |
| TAACACCTATGAGCTGAAAC+AGG | + | chr1_3:74378277-74378296 | Msa0140200:CDS | 40.0% | |
| GTTCGTGTAGGTCATTAAGA+TGG | + | chr1_3:74378405-74378424 | Msa0140200:intron | 40.0% | |
| GTCTGCTACTGAAGATCTAA+AGG | + | chr1_3:74378601-74378620 | Msa0140200:CDS | 40.0% | |
| AAGATTCTTGCCTTCTATGG+TGG | + | chr1_3:74378791-74378810 | Msa0140200:CDS | 40.0% | |
| GCTAGATTCATAATCTGTCC+TGG | + | chr1_3:74378834-74378853 | Msa0140200:CDS | 40.0% | |
| CTGCATCATTGAAAGCTGTT+AGG | + | chr1_3:74379063-74379082 | Msa0140200:CDS | 40.0% | |
| GGAGAAATACAAGCAACACA+AGG | + | chr1_3:74379085-74379104 | Msa0140200:CDS | 40.0% | |
| !! | GTATTTCTGGTGATGAAGGA+AGG | - | chr1_3:74379218-74379237 | None:intergenic | 40.0% |
| !! | TTCGGTATTTCTGGTGATGA+AGG | - | chr1_3:74379222-74379241 | None:intergenic | 40.0% |
| ATGTTGTCTTAGGGGTTAAG+TGG | + | chr1_3:74379310-74379329 | Msa0140200:three_prime_UTR | 40.0% | |
| GGGAAGAGATGAAACCTGAA+AGG | - | chr1_3:74377476-74377495 | None:intergenic | 45.0% | |
| CTCCATTGAGCGAAGATAGT+TGG | - | chr1_3:74377780-74377799 | None:intergenic | 45.0% | |
| CAACTATCTTCGCTCAATGG+AGG | + | chr1_3:74377778-74377797 | Msa0140200:CDS | 45.0% | |
| ACAGCAAGATGAAGGGTTTG+AGG | - | chr1_3:74378027-74378046 | None:intergenic | 45.0% | |
| TGAAGAAATCTCCCCACCTA+AGG | + | chr1_3:74378229-74378248 | Msa0140200:CDS | 45.0% | |
| GAAATCAACAGCCTTAGGTG+GGG | - | chr1_3:74378243-74378262 | None:intergenic | 45.0% | |
| CAGAAATCAACAGCCTTAGG+TGG | - | chr1_3:74378245-74378264 | None:intergenic | 45.0% | |
| TGGCAGAAATCAACAGCCTT+AGG | - | chr1_3:74378248-74378267 | None:intergenic | 45.0% | |
| TTTACCCAAGGATGTACTCC+AGG | - | chr1_3:74378855-74378874 | None:intergenic | 45.0% | |
| CTTAGGGGTTAAGTGGTGTT+TGG | + | chr1_3:74379317-74379336 | Msa0140200:three_prime_UTR | 45.0% | |
| GTGGCTTAGATACTTGAACC+TGG | + | chr1_3:74379376-74379395 | Msa0140200:three_prime_UTR | 45.0% | |
| AACCTGGATCTCTGTGCATA+TGG | + | chr1_3:74379392-74379411 | Msa0140200:three_prime_UTR | 45.0% | |
| AACCATATGCACAGAGATCC+AGG | - | chr1_3:74379397-74379416 | None:intergenic | 45.0% | |
| GGGAAGAGATGAAACCTGAA+AGG | - | chr1_3:74377476-74377495 | None:intergenic | 45.0% | |
| CTCCATTGAGCGAAGATAGT+TGG | - | chr1_3:74377780-74377799 | None:intergenic | 45.0% | |
| CAACTATCTTCGCTCAATGG+AGG | + | chr1_3:74377778-74377797 | Msa0140200:CDS | 45.0% | |
| ACAGCAAGATGAAGGGTTTG+AGG | - | chr1_3:74378027-74378046 | None:intergenic | 45.0% | |
| TGAAGAAATCTCCCCACCTA+AGG | + | chr1_3:74378229-74378248 | Msa0140200:CDS | 45.0% | |
| GAAATCAACAGCCTTAGGTG+GGG | - | chr1_3:74378243-74378262 | None:intergenic | 45.0% | |
| CAGAAATCAACAGCCTTAGG+TGG | - | chr1_3:74378245-74378264 | None:intergenic | 45.0% | |
| TGGCAGAAATCAACAGCCTT+AGG | - | chr1_3:74378248-74378267 | None:intergenic | 45.0% | |
| TTTACCCAAGGATGTACTCC+AGG | - | chr1_3:74378855-74378874 | None:intergenic | 45.0% | |
| CTTAGGGGTTAAGTGGTGTT+TGG | + | chr1_3:74379317-74379336 | Msa0140200:three_prime_UTR | 45.0% | |
| GTGGCTTAGATACTTGAACC+TGG | + | chr1_3:74379376-74379395 | Msa0140200:three_prime_UTR | 45.0% | |
| AACCTGGATCTCTGTGCATA+TGG | + | chr1_3:74379392-74379411 | Msa0140200:three_prime_UTR | 45.0% | |
| AACCATATGCACAGAGATCC+AGG | - | chr1_3:74379397-74379416 | None:intergenic | 45.0% | |
| !! | CCATCTCAGCTCAGGTTGAA+GGG | - | chr1_3:74377496-74377515 | None:intergenic | 50.0% |
| !! | TCCATCTCAGCTCAGGTTGA+AGG | - | chr1_3:74377497-74377516 | None:intergenic | 50.0% |
| AGATGGAGACTCGTGCTTCA+AGG | + | chr1_3:74377510-74377529 | Msa0140200:exon | 50.0% | |
| AGACTCGTGCTTCAAGGAAG+AGG | + | chr1_3:74377516-74377535 | Msa0140200:CDS | 50.0% | |
| GACTCGTGCTTCAAGGAAGA+GGG | + | chr1_3:74377517-74377536 | Msa0140200:CDS | 50.0% | |
| ! | TGAGAGGGATACTGGTGGAT+TGG | + | chr1_3:74377968-74377987 | Msa0140200:CDS | 50.0% |
| !! | AGGGATACTGGTGGATTGGT+TGG | + | chr1_3:74377972-74377991 | Msa0140200:CDS | 50.0% |
| !! | ACTGGTGGATTGGTTGGTTG+AGG | + | chr1_3:74377978-74377997 | Msa0140200:CDS | 50.0% |
| ACAGATGCAGCCACCATAGA+AGG | - | chr1_3:74378804-74378823 | None:intergenic | 50.0% | |
| TCTGTCCTGGAGTACATCCT+TGG | + | chr1_3:74378847-74378866 | Msa0140200:CDS | 50.0% | |
| CTGTCCTGGAGTACATCCTT+GGG | + | chr1_3:74378848-74378867 | Msa0140200:CDS | 50.0% | |
| !! | CCATCTCAGCTCAGGTTGAA+GGG | - | chr1_3:74377496-74377515 | None:intergenic | 50.0% |
| !! | TCCATCTCAGCTCAGGTTGA+AGG | - | chr1_3:74377497-74377516 | None:intergenic | 50.0% |
| AGATGGAGACTCGTGCTTCA+AGG | + | chr1_3:74377510-74377529 | Msa0140200:exon | 50.0% | |
| AGACTCGTGCTTCAAGGAAG+AGG | + | chr1_3:74377516-74377535 | Msa0140200:CDS | 50.0% | |
| GACTCGTGCTTCAAGGAAGA+GGG | + | chr1_3:74377517-74377536 | Msa0140200:CDS | 50.0% | |
| ! | TGAGAGGGATACTGGTGGAT+TGG | + | chr1_3:74377968-74377987 | Msa0140200:CDS | 50.0% |
| !! | AGGGATACTGGTGGATTGGT+TGG | + | chr1_3:74377972-74377991 | Msa0140200:CDS | 50.0% |
| !! | ACTGGTGGATTGGTTGGTTG+AGG | + | chr1_3:74377978-74377997 | Msa0140200:CDS | 50.0% |
| ACAGATGCAGCCACCATAGA+AGG | - | chr1_3:74378804-74378823 | None:intergenic | 50.0% | |
| TCTGTCCTGGAGTACATCCT+TGG | + | chr1_3:74378847-74378866 | Msa0140200:CDS | 50.0% | |
| CTGTCCTGGAGTACATCCTT+GGG | + | chr1_3:74378848-74378867 | Msa0140200:CDS | 50.0% | |
| CCCTTCAACCTGAGCTGAGA+TGG | + | chr1_3:74377493-74377512 | Msa0140200:exon | 55.0% | |
| ACGAGTCTCCATCTCAGCTC+AGG | - | chr1_3:74377504-74377523 | None:intergenic | 55.0% | |
| CCCTTCAACCTGAGCTGAGA+TGG | + | chr1_3:74377493-74377512 | Msa0140200:exon | 55.0% | |
| ACGAGTCTCCATCTCAGCTC+AGG | - | chr1_3:74377504-74377523 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 74377460 | 74379573 | 74377460 | ID=Msa0140200;Name=Msa0140200 |
| chr1_3 | mRNA | 74377460 | 74379573 | 74377460 | ID=Msa0140200-mRNA-1;Parent=Msa0140200;Name=Msa0140200-mRNA-1;_AED=0.11;_eAED=0.11;_QI=52|1|1|1|1|1|8|310|352 |
| chr1_3 | exon | 74377460 | 74377799 | 74377460 | ID=Msa0140200-mRNA-1:exon:25846;Parent=Msa0140200-mRNA-1 |
| chr1_3 | exon | 74377901 | 74378133 | 74377901 | ID=Msa0140200-mRNA-1:exon:25847;Parent=Msa0140200-mRNA-1 |
| chr1_3 | exon | 74378223 | 74378298 | 74378223 | ID=Msa0140200-mRNA-1:exon:25848;Parent=Msa0140200-mRNA-1 |
| chr1_3 | exon | 74378415 | 74378491 | 74378415 | ID=Msa0140200-mRNA-1:exon:25849;Parent=Msa0140200-mRNA-1 |
| chr1_3 | exon | 74378589 | 74378622 | 74378589 | ID=Msa0140200-mRNA-1:exon:25850;Parent=Msa0140200-mRNA-1 |
| chr1_3 | exon | 74378720 | 74378869 | 74378720 | ID=Msa0140200-mRNA-1:exon:25851;Parent=Msa0140200-mRNA-1 |
| chr1_3 | exon | 74378972 | 74379106 | 74378972 | ID=Msa0140200-mRNA-1:exon:25852;Parent=Msa0140200-mRNA-1 |
| chr1_3 | exon | 74379198 | 74379573 | 74379198 | ID=Msa0140200-mRNA-1:exon:25853;Parent=Msa0140200-mRNA-1 |
| chr1_3 | five_prime_UTR | 74377460 | 74377511 | 74377460 | ID=Msa0140200-mRNA-1:five_prime_utr;Parent=Msa0140200-mRNA-1 |
| chr1_3 | CDS | 74377512 | 74377799 | 74377512 | ID=Msa0140200-mRNA-1:cds;Parent=Msa0140200-mRNA-1 |
| chr1_3 | CDS | 74377901 | 74378133 | 74377901 | ID=Msa0140200-mRNA-1:cds;Parent=Msa0140200-mRNA-1 |
| chr1_3 | CDS | 74378223 | 74378298 | 74378223 | ID=Msa0140200-mRNA-1:cds;Parent=Msa0140200-mRNA-1 |
| chr1_3 | CDS | 74378415 | 74378491 | 74378415 | ID=Msa0140200-mRNA-1:cds;Parent=Msa0140200-mRNA-1 |
| chr1_3 | CDS | 74378589 | 74378622 | 74378589 | ID=Msa0140200-mRNA-1:cds;Parent=Msa0140200-mRNA-1 |
| chr1_3 | CDS | 74378720 | 74378869 | 74378720 | ID=Msa0140200-mRNA-1:cds;Parent=Msa0140200-mRNA-1 |
| chr1_3 | CDS | 74378972 | 74379106 | 74378972 | ID=Msa0140200-mRNA-1:cds;Parent=Msa0140200-mRNA-1 |
| chr1_3 | CDS | 74379198 | 74379263 | 74379198 | ID=Msa0140200-mRNA-1:cds;Parent=Msa0140200-mRNA-1 |
| chr1_3 | three_prime_UTR | 74379264 | 74379573 | 74379264 | ID=Msa0140200-mRNA-1:three_prime_utr;Parent=Msa0140200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
