AlfalfaGEDB | Msa1151710

M. sativa cultivar zhongmu-4 / Msa1151710

KEGG: -
GO: -
PFAM: PF06127.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1151710	XP_013449098.1	88.393	112	4	1	1	103	1	112	2.26e-64	201

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1151710	B7FGN5	88.393	112	4	1	1	103	1	112	1.08e-64	201

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001790	Msa1151710	0.818769	1.649018e-52	-8.615850e-47
Msa0004840	Msa1151710	0.801350	9.387359e-49	-8.615850e-47
Msa0011720	Msa1151710	0.812472	4.168270e-51	-8.615850e-47
Msa0014800	Msa1151710	0.824734	6.875033e-54	-8.615850e-47
Msa0015300	Msa1151710	0.825879	3.684292e-54	-8.615850e-47
Msa0025740	Msa1151710	0.809182	2.147148e-50	-8.615850e-47
Msa0047980	Msa1151710	0.821611	3.681656e-53	-8.615850e-47
Msa0050760	Msa1151710	0.816248	6.097938e-52	-8.615850e-47
Msa0051860	Msa1151710	0.802375	5.781006e-49	-8.615850e-47
Msa0051930	Msa1151710	0.811511	6.749751e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1151710	MtrunA17_Chr7g0241601	88.393	112	4	1	1	103	1	112	2.08e-68	201
Msa1151710	MtrunA17_Chr4g0005841	58.036	112	38	1	1	103	1	112	1.94e-44	140

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1151710	AT3G09085.1	64.545	110	30	1	1	101	1	110	1.34e-48	151

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Find 26 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGGATAGAGAGATCAAG+AGG	0.622001	7_4:+36413553	Msa1151710:CDS
AAGAATGTTCCAGCTACTTT+TGG	0.298755	7_4:+36413471	Msa1151710:CDS
AAGCTGTTAGAATGCAAATG+AGG	0.522574	7_4:-36415631	None:intergenic
AAGGGATGACCAAAAGTAGC+TGG	0.516927	7_4:-36413480	None:intergenic
AATCAAAACCCTTGCAACAC+AGG	0.552222	7_4:-36413588	None:intergenic
ACAAGACATTGGCACTTTGT+TGG	0.439809	7_4:+36413333	Msa1151710:CDS
ACATTGGCACTTTGTTGGAA+CGG	0.563774	7_4:+36413338	Msa1151710:CDS
AGCGTAGATGGATTCATATG+TGG	0.612404	7_4:+36415461	Msa1151710:three_prime_UTR
AGCTGTTAGAATGCAAATGA+GGG	0.602947	7_4:-36415630	None:intergenic
AGGAAAGCTTGAAGCGTAGA+TGG	0.469977	7_4:+36415449	Msa1151710:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCACACAAAAAAGACCAAAA+GGG	-	chr7_4:36413501-36413520	None:intergenic	30.0%
ATCACACAAAAAAGACCAAA+AGG	-	chr7_4:36413502-36413521	None:intergenic	30.0%
TTGATTTATGTGTGATTGGT+TGG	+	chr7_4:36413605-36413624	Msa1151710:intron	30.0%
CATGGCTAATTACTCTATAA+AGG	-	chr7_4:36413714-36413733	None:intergenic	30.0%
TTATAAGTGCTTATGTCAGT+AGG	-	chr7_4:36413875-36413894	None:intergenic	30.0%
GTTGATTAGAATTGGAGTAA+TGG	+	chr7_4:36414126-36414145	Msa1151710:intron	30.0%
TATACTAGTGATCTTATTCG+TGG	-	chr7_4:36414285-36414304	None:intergenic	30.0%
ATCATTTCTAACTGTTATGG+TGG	-	chr7_4:36414369-36414388	None:intergenic	30.0%
GTTATCAGATAAACTTGAAG+TGG	+	chr7_4:36414988-36415007	Msa1151710:intron	30.0%
AACTTGAAGTGGTTTCTTTA+CGG	+	chr7_4:36414999-36415018	Msa1151710:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	36413270	36415657	36413270	ID=Msa1151710;Name=Msa1151710
chr7_4	mRNA	36413270	36415657	36413270	ID=Msa1151710-mRNA-1;Parent=Msa1151710;Name=Msa1151710-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0\|0\|0.33\|1\|0\|0\|3\|197\|127
chr7_4	exon	36413270	36413373	36413270	ID=Msa1151710-mRNA-1:exon:8599;Parent=Msa1151710-mRNA-1
chr7_4	exon	36413401	36413601	36413401	ID=Msa1151710-mRNA-1:exon:8600;Parent=Msa1151710-mRNA-1
chr7_4	exon	36415382	36415657	36415382	ID=Msa1151710-mRNA-1:exon:8601;Parent=Msa1151710-mRNA-1
chr7_4	CDS	36413270	36413373	36413270	ID=Msa1151710-mRNA-1:cds;Parent=Msa1151710-mRNA-1
chr7_4	CDS	36413401	36413601	36413401	ID=Msa1151710-mRNA-1:cds;Parent=Msa1151710-mRNA-1
chr7_4	CDS	36415382	36415460	36415382	ID=Msa1151710-mRNA-1:cds;Parent=Msa1151710-mRNA-1
chr7_4	three_prime_UTR	36415461	36415657	36415461	ID=Msa1151710-mRNA-1:three_prime_utr;Parent=Msa1151710-mRNA-1

Gene Sequence

>Msa1151710

ATGAATTTTAGAAATTTGGAAGATTTCTGGGCTTTTTATGTGAGTCAACATTCAAAAAGAGCAACAAGACATTGGCACTTTGTTGGAACGGTTTTGAGTTTATTTTGGTGGTTTTTGTTGTGTGTTCCTTTATCTGGTTATGGATGTGCTTGGTATAGTCATTTCTTTGTTGAGAAGAATGTTCCAGCTACTTTTGGTCATCCCTTTTGGTCTTTTTTGTGTGATTATAAGATGTTTGGTTTGATGCTTACTGGACAAATGGATAGAGAGATCAAGAGGCTTGGTAAAAGACCTGTGTTGCAAGGTCTCTCTGCAGGTTTGTCAGATTGTGATTTTGAGCTTTGTAGTGCTTCTTCAGATCGACATCGATGCAGGAAAGCTTGA

Protein sequence

>Msa1151710

MNFRNLEDFWAFYVSQHSKRATRHWHFVGTVLSLFWWFLLCVPLSGYGCAWYSHFFVEKNVPATFGHPFWSFLCDYKMFGLMLTGQMDREIKRLGKRPVLQGLSAGLSDCDFELCSASSDRHRCRKA*