Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103160 | XP_003588461.2 | 87.935 | 431 | 12 | 5 | 1 | 430 | 1 | 392 | 0.0 | 737 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103160 | sp|Q1H5E9|PRDA1_ARATH | 65.534 | 412 | 91 | 6 | 25 | 429 | 30 | 397 | 3.81e-178 | 506 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103160 | G7I294 | 87.935 | 431 | 12 | 5 | 1 | 430 | 1 | 392 | 0.0 | 737 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000780 | Msa0103160 | 0.832527 | 8.983330e-56 | -8.615850e-47 |
| Msa0020630 | Msa0103160 | 0.817592 | 3.043893e-52 | -8.615850e-47 |
| Msa0037820 | Msa0103160 | 0.831619 | 1.506442e-55 | -8.615850e-47 |
| Msa0040410 | Msa0103160 | 0.825663 | 4.146726e-54 | -8.615850e-47 |
| Msa0040550 | Msa0103160 | -0.806543 | 7.815353e-50 | -8.615850e-47 |
| Msa0043940 | Msa0103160 | 0.808373 | 3.198049e-50 | -8.615850e-47 |
| Msa0050720 | Msa0103160 | 0.841920 | 3.544808e-58 | -8.615850e-47 |
| Msa0050770 | Msa0103160 | 0.853862 | 1.805284e-61 | -8.615850e-47 |
| Msa0056140 | Msa0103160 | -0.803118 | 4.061161e-49 | -8.615850e-47 |
| Msa0056170 | Msa0103160 | -0.802696 | 4.963885e-49 | -8.615850e-47 |
| Msa0057530 | Msa0103160 | 0.879974 | 8.033966e-70 | -8.615850e-47 |
| Msa0057690 | Msa0103160 | 0.825882 | 3.679204e-54 | -8.615850e-47 |
| Msa0061600 | Msa0103160 | -0.822494 | 2.298349e-53 | -8.615850e-47 |
| Msa0064550 | Msa0103160 | 0.844664 | 6.573493e-59 | -8.615850e-47 |
| Msa0068410 | Msa0103160 | 0.802386 | 5.750384e-49 | -8.615850e-47 |
| Msa0084680 | Msa0103160 | 0.836463 | 9.219647e-57 | -8.615850e-47 |
| Msa0091480 | Msa0103160 | 0.852628 | 4.074825e-61 | -8.615850e-47 |
| Msa0092710 | Msa0103160 | 0.809278 | 2.047848e-50 | -8.615850e-47 |
| Msa0103160 | Msa0108070 | 0.817519 | 3.161768e-52 | -8.615850e-47 |
| Msa0103160 | Msa0109490 | 0.836192 | 1.081023e-56 | -8.615850e-47 |
| Msa0103160 | Msa0130800 | 0.807711 | 4.423895e-50 | -8.615850e-47 |
| Msa0103160 | Msa0154240 | 0.800519 | 1.387655e-48 | -8.615850e-47 |
| Msa0103160 | Msa0155610 | 0.832886 | 7.319683e-56 | -8.615850e-47 |
| Msa0103160 | Msa0159750 | 0.818653 | 1.752162e-52 | -8.615850e-47 |
| Msa0103160 | Msa0171920 | 0.836816 | 7.498417e-57 | -8.615850e-47 |
| Msa0103160 | Msa0178940 | 0.812384 | 4.355290e-51 | -8.615850e-47 |
| Msa0103160 | Msa0182640 | 0.803806 | 2.924232e-49 | -8.615850e-47 |
| Msa0103160 | Msa0182930 | 0.803901 | 2.793692e-49 | -8.615850e-47 |
| Msa0103160 | Msa0198440 | 0.807004 | 6.245284e-50 | -8.615850e-47 |
| Msa0103160 | Msa0199730 | 0.805398 | 1.360918e-49 | -8.615850e-47 |
| Msa0103160 | Msa0199740 | 0.801884 | 7.292049e-49 | -8.615850e-47 |
| Msa0103160 | Msa0206940 | 0.804024 | 2.633774e-49 | -8.615850e-47 |
| Msa0103160 | Msa0216210 | 0.803838 | 2.880096e-49 | -8.615850e-47 |
| Msa0103160 | Msa0218530 | -0.816648 | 4.962278e-52 | -8.615850e-47 |
| Msa0103160 | Msa0218650 | -0.801775 | 7.679035e-49 | -8.615850e-47 |
| Msa0103160 | Msa0224370 | 0.829382 | 5.310130e-55 | -8.615850e-47 |
| Msa0103160 | Msa0224400 | 0.807322 | 5.349825e-50 | -8.615850e-47 |
| Msa0103160 | Msa0242260 | -0.806873 | 6.656629e-50 | -8.615850e-47 |
| Msa0103160 | Msa0242290 | 0.819449 | 1.154416e-52 | -8.615850e-47 |
| Msa0103160 | Msa0260190 | 0.816209 | 6.222213e-52 | -8.615850e-47 |
| Msa0103160 | Msa0265580 | 0.840420 | 8.788336e-58 | -8.615850e-47 |
| Msa0103160 | Msa0265980 | -0.800212 | 1.602200e-48 | -8.615850e-47 |
| Msa0103160 | Msa0278670 | 0.807479 | 4.953972e-50 | -8.615850e-47 |
| Msa0103160 | Msa0303440 | 0.832764 | 7.846745e-56 | -8.615850e-47 |
| Msa0103160 | Msa0303500 | 0.811528 | 6.691623e-51 | -8.615850e-47 |
| Msa0103160 | Msa0318070 | 0.801629 | 8.227799e-49 | -8.615850e-47 |
| Msa0103160 | Msa0318270 | 0.842141 | 3.099899e-58 | -8.615850e-47 |
| Msa0103160 | Msa0318310 | 0.839700 | 1.354626e-57 | -8.615850e-47 |
| Msa0103160 | Msa0323990 | 0.802681 | 4.999658e-49 | -8.615850e-47 |
| Msa0103160 | Msa0344680 | 0.828453 | 8.917342e-55 | -8.615850e-47 |
| Msa0103160 | Msa0352510 | 0.802354 | 5.839207e-49 | -8.615850e-47 |
| Msa0103160 | Msa0354390 | 0.828594 | 8.241140e-55 | -8.615850e-47 |
| Msa0103160 | Msa0358290 | 0.811110 | 8.245695e-51 | -8.615850e-47 |
| Msa0103160 | Msa0382500 | 0.815406 | 9.396364e-52 | -8.615850e-47 |
| Msa0103160 | Msa0382590 | 0.828111 | 1.078152e-54 | -8.615850e-47 |
| Msa0103160 | Msa0387790 | 0.805953 | 1.040792e-49 | -8.615850e-47 |
| Msa0103160 | Msa0392050 | 0.828855 | 7.126958e-55 | -8.615850e-47 |
| Msa0103160 | Msa0399720 | 0.811890 | 5.583795e-51 | -8.615850e-47 |
| Msa0103160 | Msa0401340 | 0.836062 | 1.166004e-56 | -8.615850e-47 |
| Msa0103160 | Msa0432680 | 0.815574 | 8.623436e-52 | -8.615850e-47 |
| Msa0103160 | Msa0432720 | 0.844516 | 7.203660e-59 | -8.615850e-47 |
| Msa0103160 | Msa0440310 | 0.806383 | 8.447350e-50 | -8.615850e-47 |
| Msa0103160 | Msa0448080 | 0.801468 | 8.875335e-49 | -8.615850e-47 |
| Msa0103160 | Msa0448120 | 0.830786 | 2.413913e-55 | -8.615850e-47 |
| Msa0103160 | Msa0458790 | 0.802836 | 4.643922e-49 | -8.615850e-47 |
| Msa0103160 | Msa0463590 | -0.800794 | 1.219379e-48 | -8.615850e-47 |
| Msa0103160 | Msa0465800 | 0.836617 | 8.426603e-57 | -8.615850e-47 |
| Msa0103160 | Msa0469950 | 0.828460 | 8.881582e-55 | -8.615850e-47 |
| Msa0103160 | Msa0472740 | 0.828312 | 9.642605e-55 | -8.615850e-47 |
| Msa0103160 | Msa0481490 | 0.808297 | 3.319142e-50 | -8.615850e-47 |
| Msa0103160 | Msa0482960 | 0.828244 | 1.001368e-54 | -8.615850e-47 |
| Msa0103160 | Msa0487490 | 0.831635 | 1.492911e-55 | -8.615850e-47 |
| Msa0103160 | Msa0512310 | 0.811926 | 5.483681e-51 | -8.615850e-47 |
| Msa0103160 | Msa0524050 | 0.835744 | 1.404038e-56 | -8.615850e-47 |
| Msa0103160 | Msa0525270 | 0.848823 | 4.792917e-60 | -8.615850e-47 |
| Msa0103160 | Msa0525280 | 0.843285 | 1.539019e-58 | -8.615850e-47 |
| Msa0103160 | Msa0530340 | 0.816476 | 5.424049e-52 | -8.615850e-47 |
| Msa0103160 | Msa0530930 | 0.811227 | 7.780138e-51 | -8.615850e-47 |
| Msa0103160 | Msa0530950 | 0.830906 | 2.255223e-55 | -8.615850e-47 |
| Msa0103160 | Msa0545230 | 0.833618 | 4.808419e-56 | -8.615850e-47 |
| Msa0103160 | Msa0549540 | 0.813917 | 2.007600e-51 | -8.615850e-47 |
| Msa0103160 | Msa0550110 | 0.806168 | 9.376832e-50 | -8.615850e-47 |
| Msa0103160 | Msa0577230 | 0.846121 | 2.650487e-59 | -8.615850e-47 |
| Msa0103160 | Msa0583740 | 0.839686 | 1.365699e-57 | -8.615850e-47 |
| Msa0103160 | Msa0584280 | 0.809073 | 2.265668e-50 | -8.615850e-47 |
| Msa0103160 | Msa0587900 | 0.816287 | 5.976449e-52 | -8.615850e-47 |
| Msa0103160 | Msa0589640 | 0.807821 | 4.191763e-50 | -8.615850e-47 |
| Msa0103160 | Msa0593810 | 0.809120 | 2.213571e-50 | -8.615850e-47 |
| Msa0103160 | Msa0600820 | 0.829468 | 5.060824e-55 | -8.615850e-47 |
| Msa0103160 | Msa0605250 | 0.821998 | 2.996585e-53 | -8.615850e-47 |
| Msa0103160 | Msa0622250 | 0.801558 | 8.506412e-49 | -8.615850e-47 |
| Msa0103160 | Msa0628100 | 0.819772 | 9.746020e-53 | -8.615850e-47 |
| Msa0103160 | Msa0646570 | 0.811235 | 7.749908e-51 | -8.615850e-47 |
| Msa0103160 | Msa0649310 | 0.802372 | 5.788292e-49 | -8.615850e-47 |
| Msa0103160 | Msa0651400 | 0.821998 | 2.997041e-53 | -8.615850e-47 |
| Msa0103160 | Msa0659040 | 0.805008 | 1.642290e-49 | -8.615850e-47 |
| Msa0103160 | Msa0667970 | 0.819454 | 1.151809e-52 | -8.615850e-47 |
| Msa0103160 | Msa0679780 | 0.813788 | 2.144124e-51 | -8.615850e-47 |
| Msa0103160 | Msa0685540 | 0.803035 | 4.225072e-49 | -8.615850e-47 |
| Msa0103160 | Msa0698600 | 0.824048 | 9.970418e-54 | -8.615850e-47 |
| Msa0103160 | Msa0704220 | 0.854670 | 1.054442e-61 | -8.615850e-47 |
| Msa0103160 | Msa0714600 | 0.823322 | 1.474335e-53 | -8.615850e-47 |
| Msa0103160 | Msa0724050 | 0.801171 | 1.021380e-48 | -8.615850e-47 |
| Msa0103160 | Msa0729550 | 0.814162 | 1.773095e-51 | -8.615850e-47 |
| Msa0103160 | Msa0733000 | 0.804253 | 2.360615e-49 | -8.615850e-47 |
| Msa0103160 | Msa0750380 | 0.835469 | 1.647629e-56 | -8.615850e-47 |
| Msa0103160 | Msa0760890 | 0.815085 | 1.107412e-51 | -8.615850e-47 |
| Msa0103160 | Msa0769830 | 0.863910 | 1.776303e-64 | -8.615850e-47 |
| Msa0103160 | Msa0780140 | 0.828178 | 1.038617e-54 | -8.615850e-47 |
| Msa0103160 | Msa0794460 | 0.820038 | 8.468535e-53 | -8.615850e-47 |
| Msa0103160 | Msa0806720 | 0.860990 | 1.404184e-63 | -8.615850e-47 |
| Msa0103160 | Msa0806760 | 0.860130 | 2.559204e-63 | -8.615850e-47 |
| Msa0103160 | Msa0809300 | 0.817065 | 3.999404e-52 | -8.615850e-47 |
| Msa0103160 | Msa0813320 | -0.816307 | 5.916977e-52 | -8.615850e-47 |
| Msa0103160 | Msa0824140 | 0.819050 | 1.423758e-52 | -8.615850e-47 |
| Msa0103160 | Msa0828570 | 0.808488 | 3.021917e-50 | -8.615850e-47 |
| Msa0103160 | Msa0830720 | 0.842127 | 3.126871e-58 | -8.615850e-47 |
| Msa0103160 | Msa0848380 | 0.815799 | 7.680697e-52 | -8.615850e-47 |
| Msa0103160 | Msa0848760 | 0.860178 | 2.475848e-63 | -8.615850e-47 |
| Msa0103160 | Msa0851740 | 0.820881 | 5.425659e-53 | -8.615850e-47 |
| Msa0103160 | Msa0863250 | 0.826432 | 2.722075e-54 | -8.615850e-47 |
| Msa0103160 | Msa0882700 | 0.849234 | 3.685556e-60 | -8.615850e-47 |
| Msa0103160 | Msa0909710 | 0.817985 | 2.482597e-52 | -8.615850e-47 |
| Msa0103160 | Msa0937940 | 0.806713 | 7.197250e-50 | -8.615850e-47 |
| Msa0103160 | Msa0944690 | 0.856982 | 2.225171e-62 | -8.615850e-47 |
| Msa0103160 | Msa0945960 | 0.851703 | 7.467599e-61 | -8.615850e-47 |
| Msa0103160 | Msa0955260 | 0.811352 | 7.310211e-51 | -8.615850e-47 |
| Msa0103160 | Msa0968780 | 0.810849 | 9.391849e-51 | -8.615850e-47 |
| Msa0103160 | Msa0975080 | 0.820611 | 6.259861e-53 | -8.615850e-47 |
| Msa0103160 | Msa0984000 | 0.815097 | 1.100507e-51 | -8.615850e-47 |
| Msa0103160 | Msa1004210 | 0.822732 | 2.023500e-53 | -8.615850e-47 |
| Msa0103160 | Msa1018020 | -0.809839 | 1.551343e-50 | -8.615850e-47 |
| Msa0103160 | Msa1029430 | 0.803164 | 3.972219e-49 | -8.615850e-47 |
| Msa0103160 | Msa1036250 | 0.812975 | 3.233813e-51 | -8.615850e-47 |
| Msa0103160 | Msa1038320 | 0.824559 | 7.557628e-54 | -8.615850e-47 |
| Msa0103160 | Msa1041080 | 0.804487 | 2.110255e-49 | -8.615850e-47 |
| Msa0103160 | Msa1046610 | 0.824774 | 6.725428e-54 | -8.615850e-47 |
| Msa0103160 | Msa1055360 | 0.817851 | 2.661714e-52 | -8.615850e-47 |
| Msa0103160 | Msa1064210 | 0.814596 | 1.421206e-51 | -8.615850e-47 |
| Msa0103160 | Msa1069960 | 0.810165 | 1.320065e-50 | -8.615850e-47 |
| Msa0103160 | Msa1072340 | 0.811451 | 6.955302e-51 | -8.615850e-47 |
| Msa0103160 | Msa1080620 | 0.809631 | 1.719647e-50 | -8.615850e-47 |
| Msa0103160 | Msa1080690 | 0.807185 | 5.717943e-50 | -8.615850e-47 |
| Msa0103160 | Msa1080840 | 0.836580 | 8.609092e-57 | -8.615850e-47 |
| Msa0103160 | Msa1082150 | 0.833964 | 3.939720e-56 | -8.615850e-47 |
| Msa0103160 | Msa1112000 | 0.818588 | 1.812894e-52 | -8.615850e-47 |
| Msa0103160 | Msa1115830 | 0.841140 | 5.692733e-58 | -8.615850e-47 |
| Msa0103160 | Msa1118150 | 0.843302 | 1.522945e-58 | -8.615850e-47 |
| Msa0103160 | Msa1118980 | 0.842893 | 1.958187e-58 | -8.615850e-47 |
| Msa0103160 | Msa1119860 | 0.808110 | 3.638238e-50 | -8.615850e-47 |
| Msa0103160 | Msa1130730 | 0.804734 | 1.874259e-49 | -8.615850e-47 |
| Msa0103160 | Msa1144730 | 0.829685 | 4.482521e-55 | -8.615850e-47 |
| Msa0103160 | Msa1157730 | 0.819208 | 1.310598e-52 | -8.615850e-47 |
| Msa0103160 | Msa1173380 | 0.820024 | 8.535224e-53 | -8.615850e-47 |
| Msa0103160 | Msa1177240 | 0.845359 | 4.267109e-59 | -8.615850e-47 |
| Msa0103160 | Msa1214900 | 0.802327 | 5.912470e-49 | -8.615850e-47 |
| Msa0103160 | Msa1222030 | -0.810548 | 1.091039e-50 | -8.615850e-47 |
| Msa0103160 | Msa1222580 | 0.814440 | 1.538897e-51 | -8.615850e-47 |
| Msa0103160 | Msa1262310 | 0.800762 | 1.237558e-48 | -8.615850e-47 |
| Msa0103160 | Msa1264560 | 0.800653 | 1.302930e-48 | -8.615850e-47 |
| Msa0103160 | Msa1293050 | 0.806804 | 6.883788e-50 | -8.615850e-47 |
| Msa0103160 | Msa1306190 | 0.804564 | 2.033024e-49 | -8.615850e-47 |
| Msa0103160 | Msa1306200 | 0.813973 | 1.951971e-51 | -8.615850e-47 |
| Msa0103160 | Msa1317030 | 0.834764 | 2.481738e-56 | -8.615850e-47 |
| Msa0103160 | Msa1320380 | 0.811903 | 5.545871e-51 | -8.615850e-47 |
| Msa0103160 | Msa1326000 | 0.800057 | 1.722737e-48 | -8.615850e-47 |
| Msa0103160 | Msa1326400 | 0.824138 | 9.492179e-54 | -8.615850e-47 |
| Msa0103160 | Msa1332140 | -0.823802 | 1.138528e-53 | -8.615850e-47 |
| Msa0103160 | Msa1335970 | -0.820241 | 7.609787e-53 | -8.615850e-47 |
| Msa0103160 | Msa1347290 | 0.823244 | 1.537505e-53 | -8.615850e-47 |
| Msa0103160 | Msa1347620 | 0.806871 | 6.663972e-50 | -8.615850e-47 |
| Msa0103160 | Msa1349810 | 0.800685 | 1.283346e-48 | -8.615850e-47 |
| Msa0103160 | Msa1354090 | 0.823910 | 1.073878e-53 | -8.615850e-47 |
| Msa0103160 | Msa1376350 | 0.825356 | 4.900611e-54 | -8.615850e-47 |
| Msa0103160 | Msa1380720 | 0.806456 | 8.152313e-50 | -8.615850e-47 |
| Msa0103160 | Msa1394900 | 0.830105 | 3.540961e-55 | -8.615850e-47 |
| Msa0103160 | Msa1412520 | 0.824509 | 7.768658e-54 | -8.615850e-47 |
| Msa0103160 | Msa1418200 | 0.823906 | 1.076071e-53 | -8.615850e-47 |
| Msa0103160 | Msa1420520 | 0.840732 | 7.281809e-58 | -8.615850e-47 |
| Msa0103160 | Msa1421870 | 0.808523 | 2.970873e-50 | -8.615850e-47 |
| Msa0103160 | Msa1423230 | 0.824858 | 6.425531e-54 | -8.615850e-47 |
| Msa0103160 | Msa1428420 | 0.813214 | 2.866252e-51 | -8.615850e-47 |
| Msa0103160 | Msa1430760 | 0.836680 | 8.120905e-57 | -8.615850e-47 |
| Msa0103160 | Msa1431730 | 0.810267 | 1.255032e-50 | -8.615850e-47 |
| Msa0103160 | Msa1434660 | 0.857368 | 1.712390e-62 | -8.615850e-47 |
| Msa0103160 | Msa1439030 | 0.821216 | 4.542705e-53 | -8.615850e-47 |
| Msa0103160 | Msa1439120 | 0.811929 | 5.473703e-51 | -8.615850e-47 |
| Msa0103160 | Msa1440220 | 0.815672 | 8.197857e-52 | -8.615850e-47 |
| Msa0103160 | Msa1440610 | 0.834433 | 3.005799e-56 | -8.615850e-47 |
| Msa0103160 | Msa1455660 | 0.806158 | 9.423904e-50 | -8.615850e-47 |
| Msa0103160 | Msa1458920 | 0.807218 | 5.626315e-50 | -8.615850e-47 |
| Msa0103160 | Msa1459540 | 0.808885 | 2.486208e-50 | -8.615850e-47 |
| Msa0103160 | Msa1466350 | 0.817848 | 2.665827e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103160 | MtrunA17_Chr1g0146581 | 87.935 | 431 | 12 | 5 | 1 | 430 | 1 | 392 | 0.0 | 737 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0103160 | AT5G48470.1 | 65.534 | 412 | 91 | 6 | 25 | 429 | 30 | 397 | 3.87e-179 | 506 |
Find 97 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGAACTTCTTAACTAAAT+TGG | 0.216407 | 1_3:-10266491 | Msa0103160:CDS |
| TAAGTGGAAGTTGTTAAATT+TGG | 0.222471 | 1_3:+10268762 | None:intergenic |
| GCTGGTGGCGGTTTATTTAA+AGG | 0.249104 | 1_3:-10267267 | Msa0103160:CDS |
| TTGGCTGCACAAGGAGTTAT+TGG | 0.297509 | 1_3:-10267855 | Msa0103160:CDS |
| CAACGTGAAGCACTTCTTAA+AGG | 0.300057 | 1_3:-10268561 | Msa0103160:CDS |
| ATTGCTTCAGTTGGAAGATA+TGG | 0.323656 | 1_3:-10267913 | Msa0103160:CDS |
| CCAGGCTGATGATTTATTAG+AGG | 0.340782 | 1_3:-10267190 | Msa0103160:intron |
| TTCGTAACTCGTTTCGCTGC+TGG | 0.342996 | 1_3:+10268665 | None:intergenic |
| AAAGACACTTCAAGTCCTTC+AGG | 0.380892 | 1_3:-10265373 | Msa0103160:CDS |
| TGGTATCACTGCACAACATC+TGG | 0.381522 | 1_3:-10265885 | Msa0103160:CDS |
| GTTTCTCGAAACAGTCTCTA+AGG | 0.386239 | 1_3:-10266195 | Msa0103160:intron |
| AGGGTTTCAGTAGGATTTGC+TGG | 0.394147 | 1_3:-10266370 | Msa0103160:CDS |
| CATGATCGACCTTGCTGAAA+AGG | 0.401610 | 1_3:-10267784 | Msa0103160:CDS |
| TCTATGTAGAACTCCCAAAA+AGG | 0.407720 | 1_3:-10267322 | Msa0103160:CDS |
| CGCCGAGTTGCAGCTGGTGG+CGG | 0.436206 | 1_3:-10267279 | Msa0103160:CDS |
| GTCTTGTCTGGTATATATGC+TGG | 0.441648 | 1_3:-10265917 | Msa0103160:CDS |
| AGAAGAAGCCCGTGATATGA+TGG | 0.446513 | 1_3:-10266744 | Msa0103160:CDS |
| ATGCCCGGGCGTACGGGATG+TGG | 0.451249 | 1_3:+10266218 | None:intergenic |
| AAATTGGTGGCCTTAAAACC+TGG | 0.455899 | 1_3:-10266475 | Msa0103160:CDS |
| GAGAAACATGCCCGGGCGTA+CGG | 0.457983 | 1_3:+10266211 | None:intergenic |
| TCAGTTGGAAGATATGGATA+TGG | 0.459065 | 1_3:-10267907 | Msa0103160:CDS |
| CGGTTAAGAAGTTCGTTAAG+TGG | 0.478824 | 1_3:+10268627 | None:intergenic |
| CTTAAAACACTGTTGGTAAG+TGG | 0.479742 | 1_3:+10268746 | None:intergenic |
| GATATCCAGGCAAGTGTGAC+AGG | 0.482176 | 1_3:-10266248 | Msa0103160:intron |
| GAGATGTTTGTGTGGATAGC+GGG | 0.482357 | 1_3:+10268808 | None:intergenic |
| CAAGGTCGATCATGTAATCA+AGG | 0.486722 | 1_3:+10267793 | None:intergenic |
| AAATTTGTTATTGCTTCAGT+TGG | 0.486917 | 1_3:-10267922 | Msa0103160:CDS |
| CACTGCACAACATCTGGAAT+GGG | 0.487263 | 1_3:-10265879 | Msa0103160:intron |
| GCTTCAACTTAAAACACTGT+TGG | 0.489442 | 1_3:+10268739 | None:intergenic |
| TTACATTATTCACTTTGTAA+AGG | 0.495793 | 1_3:+10265194 | None:intergenic |
| ATATCCAGCACAACTTTCCC+AGG | 0.498084 | 1_3:+10266457 | None:intergenic |
| GAAGCCACATCCCGTACGCC+CGG | 0.501358 | 1_3:-10266222 | Msa0103160:CDS |
| AGAAACATGCCCGGGCGTAC+GGG | 0.507961 | 1_3:+10266212 | None:intergenic |
| CAGATCGAAAACTGCTTGCA+AGG | 0.510311 | 1_3:-10266781 | Msa0103160:CDS |
| TGTCATTTAGATTTGCCCCT+GGG | 0.513084 | 1_3:+10267220 | None:intergenic |
| TGAAAAGGACCAGGATGATA+AGG | 0.514097 | 1_3:-10267769 | Msa0103160:intron |
| GATGCAGCGCAAGTCACTGT+TGG | 0.515901 | 1_3:-10267512 | Msa0103160:intron |
| AAATGAAAACTCAGAGGAAG+AGG | 0.517964 | 1_3:-10268604 | Msa0103160:CDS |
| TCACTGCACAACATCTGGAA+TGG | 0.520829 | 1_3:-10265880 | Msa0103160:CDS |
| AAAACCTGGGAAAGTTGTGC+TGG | 0.524406 | 1_3:-10266461 | Msa0103160:CDS |
| TTTCAGTAGGATTTGCTGGA+AGG | 0.527571 | 1_3:-10266366 | Msa0103160:CDS |
| TGAGAAAGTAGCAGTGGAGT+TGG | 0.529397 | 1_3:-10267874 | Msa0103160:CDS |
| ACGAGTTACGAAGTTGGTGG+TGG | 0.530088 | 1_3:-10268654 | Msa0103160:CDS |
| GGTAATCATTTCTTGAAGAA+CGG | 0.532423 | 1_3:+10268521 | None:intergenic |
| TTCAGTAGGATTTGCTGGAA+GGG | 0.534641 | 1_3:-10266365 | Msa0103160:intron |
| ATATACTCTACCTCCGGCTG+AGG | 0.542581 | 1_3:-10266684 | Msa0103160:intron |
| AATTTATACATGTAACATAG+TGG | 0.544664 | 1_3:+10267940 | None:intergenic |
| CTGGCAACGATGATGATGAC+AGG | 0.544853 | 1_3:-10266390 | Msa0103160:CDS |
| GCCCGTGATATGATGGGAGG+GGG | 0.546168 | 1_3:-10266737 | Msa0103160:CDS |
| TCACATCAACATACCTCAGC+CGG | 0.548413 | 1_3:+10266671 | None:intergenic |
| TTGTTACGCCGAGTTGCAGC+TGG | 0.549323 | 1_3:-10267285 | Msa0103160:CDS |
| CGACCTTGCTGAAAAGGACC+AGG | 0.551500 | 1_3:-10267778 | Msa0103160:CDS |
| GAACTTCTTAACTAAATTGG+TGG | 0.554110 | 1_3:-10266488 | Msa0103160:CDS |
| AAAATCACACCTTATCATCC+TGG | 0.554236 | 1_3:+10267760 | None:intergenic |
| GACTTGAAGATTCATATCCC+AGG | 0.555335 | 1_3:-10267237 | Msa0103160:CDS |
| AAGAAGTTCCTAACCTGGGG+TGG | 0.556577 | 1_3:+10267445 | None:intergenic |
| ATGATAAGAAATGTGATGCT+CGG | 0.559415 | 1_3:-10266436 | Msa0103160:CDS |
| TCTAAATGACATAGCTAACC+AGG | 0.561777 | 1_3:-10267208 | Msa0103160:CDS |
| GGAGATGTTTGTGTGGATAG+CGG | 0.564644 | 1_3:+10268807 | None:intergenic |
| TGGATTATATACTCTACCTC+CGG | 0.568191 | 1_3:-10266690 | Msa0103160:CDS |
| ATGTCATTTAGATTTGCCCC+TGG | 0.570026 | 1_3:+10267219 | None:intergenic |
| AGCCCGTGATATGATGGGAG+GGG | 0.571772 | 1_3:-10266738 | Msa0103160:CDS |
| GAAGAAGCCCGTGATATGAT+GGG | 0.572557 | 1_3:-10266743 | Msa0103160:CDS |
| AACCGCCACCAGCTGCAACT+CGG | 0.572890 | 1_3:+10267277 | None:intergenic |
| CTGTTTCGAGAAACATGCCC+GGG | 0.576547 | 1_3:+10266204 | None:intergenic |
| TGGTAAGAGAGTTGATCAGA+TGG | 0.580714 | 1_3:-10267835 | Msa0103160:CDS |
| CCTCTAATAAATCATCAGCC+TGG | 0.582816 | 1_3:+10267190 | None:intergenic |
| AGAATCTGAGAAAGTAGCAG+TGG | 0.584761 | 1_3:-10267880 | Msa0103160:CDS |
| GCAGTGGAGTTGGCTGCACA+AGG | 0.598277 | 1_3:-10267864 | Msa0103160:CDS |
| GATGATGACAGGGTTTCAGT+AGG | 0.598496 | 1_3:-10266379 | Msa0103160:CDS |
| TCCAGGCAAGTGTGACAGGA+CGG | 0.598526 | 1_3:-10266244 | Msa0103160:intron |
| ACTTGAAGATTCATATCCCA+GGG | 0.598867 | 1_3:-10267236 | Msa0103160:CDS |
| AGCGAAACGAGTTACGAAGT+TGG | 0.600034 | 1_3:-10268660 | Msa0103160:CDS |
| AATTGGTGGCCTTAAAACCT+GGG | 0.600896 | 1_3:-10266474 | Msa0103160:CDS |
| AAGCCACATCCCGTACGCCC+GGG | 0.603062 | 1_3:-10266221 | Msa0103160:CDS |
| TTACGCCGAGTTGCAGCTGG+TGG | 0.603081 | 1_3:-10267282 | Msa0103160:CDS |
| GATGGAATCTGATTTCATGA+TGG | 0.604669 | 1_3:-10267817 | Msa0103160:CDS |
| ACTGTTTCGAGAAACATGCC+CGG | 0.605216 | 1_3:+10266203 | None:intergenic |
| AGTTAAATGCTATCTCCTGA+AGG | 0.608001 | 1_3:+10265358 | None:intergenic |
| AAGCCCGTGATATGATGGGA+GGG | 0.613927 | 1_3:-10266739 | Msa0103160:CDS |
| AGAAGTTCCTAACCTGGGGT+GGG | 0.618085 | 1_3:+10267446 | None:intergenic |
| GTGATGCTCGGAAAAGATGA+AGG | 0.623308 | 1_3:-10266424 | Msa0103160:CDS |
| AAGGTCGATCATGTAATCAA+GGG | 0.636967 | 1_3:+10267794 | None:intergenic |
| TTGGATGAAAGAAATGACCG+TGG | 0.639445 | 1_3:-10266710 | Msa0103160:CDS |
| GAAACGAGTTACGAAGTTGG+TGG | 0.639914 | 1_3:-10268657 | Msa0103160:CDS |
| GAGGTAGAGTATATAATCCA+CGG | 0.643703 | 1_3:+10266693 | None:intergenic |
| CGTGAAGCACTTCTTAAAGG+TGG | 0.644178 | 1_3:-10268558 | Msa0103160:CDS |
| AATGTAAGGAGATGTTTGTG+TGG | 0.646000 | 1_3:+10268800 | None:intergenic |
| GATGAAGGTGCAGACAACAC+TGG | 0.647546 | 1_3:-10266409 | Msa0103160:CDS |
| CCCGTGATATGATGGGAGGG+GGG | 0.648810 | 1_3:-10266736 | Msa0103160:CDS |
| GAAGCCCGTGATATGATGGG+AGG | 0.651249 | 1_3:-10266740 | Msa0103160:CDS |
| GTTGAACTTGAATTTCAATG+TGG | 0.669501 | 1_3:-10267976 | Msa0103160:CDS |
| TGGCAACGATGATGATGACA+GGG | 0.681533 | 1_3:-10266389 | Msa0103160:CDS |
| CATCAACATACCTCAGCCGG+AGG | 0.697012 | 1_3:+10266674 | None:intergenic |
| TAACCGAAATGAAAACTCAG+AGG | 0.701522 | 1_3:-10268610 | Msa0103160:CDS |
| ATATATGCTGGATCTGACAA+TGG | 0.706008 | 1_3:-10265905 | Msa0103160:CDS |
| CTTGAAGATTCATATCCCAG+GGG | 0.774008 | 1_3:-10267235 | Msa0103160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAATTTGAATCGTTTTT+GGG | + | chr1_3:10265181-10265200 | None:intergenic | 15.0% |
| !!! | ACTATAATCCTATTTTTTTA+TGG | - | chr1_3:10268753-10268772 | Msa0103160:CDS | 15.0% |
| !!! | TTAAATTTGAATCGTTTTTG+GGG | + | chr1_3:10265180-10265199 | None:intergenic | 20.0% |
| !!! | GATTAAATTTGAATCGTTTT+TGG | + | chr1_3:10265182-10265201 | None:intergenic | 20.0% |
| !!! | TTAATTTTAAACGCTATGTT+TGG | - | chr1_3:10265207-10265226 | Msa0103160:three_prime_UTR | 20.0% |
| !! | AAACATGAATGAAAAATGTA+AGG | + | chr1_3:10265276-10265295 | None:intergenic | 20.0% |
| !! | TCAAGTAAAATAACTTACAA+GGG | + | chr1_3:10265562-10265581 | None:intergenic | 20.0% |
| !! | TTCAAGTAAAATAACTTACA+AGG | + | chr1_3:10265563-10265582 | None:intergenic | 20.0% |
| !! | AATTTATACATGTAACATAG+TGG | + | chr1_3:10266122-10266141 | None:intergenic | 20.0% |
| !! | AGATTGTAATTGAATATAGT+TGG | + | chr1_3:10266395-10266414 | None:intergenic | 20.0% |
| !! | ATTCAATTACAATCTACATT+TGG | - | chr1_3:10266400-10266419 | Msa0103160:CDS | 20.0% |
| !!! | AAATGGTATTTTGGTTAATT+TGG | + | chr1_3:10266464-10266483 | None:intergenic | 20.0% |
| !! | ATATTTATCACTCAATTGAA+AGG | + | chr1_3:10267164-10267183 | None:intergenic | 20.0% |
| !!! | TGTGTAGATTTAAAACTAAA+TGG | - | chr1_3:10267491-10267510 | Msa0103160:CDS | 20.0% |
| !!! | CCAAGTATTTTACAATTATA+TGG | + | chr1_3:10267951-10267970 | None:intergenic | 20.0% |
| !! | CCATATAATTGTAAAATACT+TGG | - | chr1_3:10267948-10267967 | Msa0103160:CDS | 20.0% |
| !! | GTTATCAAAATAAAACAGTT+TGG | + | chr1_3:10268004-10268023 | None:intergenic | 20.0% |
| !!! | AAAAATAGAAAAGTATCAAC+TGG | + | chr1_3:10268117-10268136 | None:intergenic | 20.0% |
| !! | AATAGAAACATTTATGGATT+TGG | + | chr1_3:10268225-10268244 | None:intergenic | 20.0% |
| !! | TTTGGAAATAGAAACATTTA+TGG | + | chr1_3:10268231-10268250 | None:intergenic | 20.0% |
| !! | AATTAATAGGTATTTATGAC+AGG | + | chr1_3:10268269-10268288 | None:intergenic | 20.0% |
| !! | AGCTTATGCATAAAATTAAT+AGG | + | chr1_3:10268282-10268301 | None:intergenic | 20.0% |
| !! | TTACATTATTCACTTTGTAA+AGG | + | chr1_3:10268868-10268887 | None:intergenic | 20.0% |
| ! | TAAGTGGAAGTTGTTAAATT+TGG | + | chr1_3:10265300-10265319 | None:intergenic | 25.0% |
| ! | TTTGAATTCAATTTCTCCAA+CGG | + | chr1_3:10265627-10265646 | None:intergenic | 25.0% |
| ! | AAAAGAATGTCCTTATCAAT+TGG | - | chr1_3:10265897-10265916 | Msa0103160:CDS | 25.0% |
| ! | AAAGAATGTCCTTATCAATT+GGG | - | chr1_3:10265898-10265917 | Msa0103160:CDS | 25.0% |
| !!! | TGTGCTCTGAATTTATATTT+TGG | + | chr1_3:10265925-10265944 | None:intergenic | 25.0% |
| ! | AAGAAAAAGAAATGTTTGCA+AGG | + | chr1_3:10266019-10266038 | None:intergenic | 25.0% |
| !! | TTGCAAACATTTCTTTTTCT+TGG | - | chr1_3:10266018-10266037 | Msa0103160:intron | 25.0% |
| !!! | AAATTTGTTATTGCTTCAGT+TGG | - | chr1_3:10266137-10266156 | Msa0103160:intron | 25.0% |
| !!! | ATCTTTTAGGTTCAAGTAAT+TGG | - | chr1_3:10266711-10266730 | Msa0103160:CDS | 25.0% |
| ! | TTAAACAACTGTATGAATGA+AGG | + | chr1_3:10266934-10266953 | None:intergenic | 25.0% |
| ! | GATTAATTGTTTACAGACAA+TGG | - | chr1_3:10267237-10267256 | Msa0103160:CDS | 25.0% |
| !!! | ATTTTGTCGTTTGTGTTAAA+AGG | - | chr1_3:10267446-10267465 | Msa0103160:intron | 25.0% |
| !!! | TTTTGTCGTTTGTGTTAAAA+GGG | - | chr1_3:10267447-10267466 | Msa0103160:intron | 25.0% |
| ! | ACCATTCATCATAAAAACTA+TGG | + | chr1_3:10267900-10267919 | None:intergenic | 25.0% |
| ! | TACAATTATATGGAATTCTC+AGG | + | chr1_3:10267941-10267960 | None:intergenic | 25.0% |
| ! | AGTTGAAAATTTCACTCTAT+TGG | - | chr1_3:10267974-10267993 | Msa0103160:CDS | 25.0% |
| ! | GTTGAAAATTTCACTCTATT+GGG | - | chr1_3:10267975-10267994 | Msa0103160:CDS | 25.0% |
| ! | TTGAAAATTTCACTCTATTG+GGG | - | chr1_3:10267976-10267995 | Msa0103160:CDS | 25.0% |
| ! | ATATATCAAGAACTGAGTAT+GGG | + | chr1_3:10268032-10268051 | None:intergenic | 25.0% |
| ! | TATATATCAAGAACTGAGTA+TGG | + | chr1_3:10268033-10268052 | None:intergenic | 25.0% |
| ! | CTGTATGATAGATAATAATC+AGG | + | chr1_3:10268057-10268076 | None:intergenic | 25.0% |
| ! | TTCGAATGAAAAACAAAGTT+TGG | - | chr1_3:10268555-10268574 | Msa0103160:CDS | 25.0% |
| !!! | TGGCTTGTTACTTTATAATA+TGG | + | chr1_3:10268599-10268618 | None:intergenic | 25.0% |
| ! | CTTCTTCACCATAAAAAAAT+AGG | + | chr1_3:10268764-10268783 | None:intergenic | 25.0% |
| !!! | TTTTTTATGGTGAAGAAGAA+TGG | - | chr1_3:10268766-10268785 | Msa0103160:CDS | 25.0% |
| GGTAATCATTTCTTGAAGAA+CGG | + | chr1_3:10265541-10265560 | None:intergenic | 30.0% | |
| ACAACTTGCCATATTATGTT+TGG | - | chr1_3:10265647-10265666 | Msa0103160:intron | 30.0% | |
| CAACTTGCCATATTATGTTT+GGG | - | chr1_3:10265648-10265667 | Msa0103160:intron | 30.0% | |
| TAAAACGTAAGATCTCTGTA+AGG | + | chr1_3:10265878-10265897 | None:intergenic | 30.0% | |
| !! | TATTTTGGACCCAATTGATA+AGG | + | chr1_3:10265910-10265929 | None:intergenic | 30.0% |
| GTTGAACTTGAATTTCAATG+TGG | - | chr1_3:10266083-10266102 | Msa0103160:intron | 30.0% | |
| ! | TTGGTTAATTTGGTCTCTTA+GGG | + | chr1_3:10266454-10266473 | None:intergenic | 30.0% |
| ! | TTTGGTTAATTTGGTCTCTT+AGG | + | chr1_3:10266455-10266474 | None:intergenic | 30.0% |
| ATCGAAATATATGCACAGTT+AGG | + | chr1_3:10266530-10266549 | None:intergenic | 30.0% | |
| ATTAAAGAAGTTCCTAACCT+GGG | + | chr1_3:10266621-10266640 | None:intergenic | 30.0% | |
| TGGTATACAACATTACAACT+TGG | + | chr1_3:10266673-10266692 | None:intergenic | 30.0% | |
| ACTTGAACCTAAAAGATGAA+GGG | + | chr1_3:10266708-10266727 | None:intergenic | 30.0% | |
| TACTTGAACCTAAAAGATGA+AGG | + | chr1_3:10266709-10266728 | None:intergenic | 30.0% | |
| ! | TCATATCTGCTTTCCTTTTT+GGG | + | chr1_3:10266753-10266772 | None:intergenic | 30.0% |
| ! | TTCATATCTGCTTTCCTTTT+TGG | + | chr1_3:10266754-10266773 | None:intergenic | 30.0% |
| AAGGATAGAAAAAGTTAACC+AGG | + | chr1_3:10267145-10267164 | None:intergenic | 30.0% | |
| ! | AACAGTGTTTAAAATTCACG+TGG | + | chr1_3:10267216-10267235 | None:intergenic | 30.0% |
| GTCGCAAAAAAATATGCTTT+CGG | - | chr1_3:10267520-10267539 | Msa0103160:intron | 30.0% | |
| GGTGAACTTCTTAACTAAAT+TGG | - | chr1_3:10267568-10267587 | Msa0103160:intron | 30.0% | |
| GAACTTCTTAACTAAATTGG+TGG | - | chr1_3:10267571-10267590 | Msa0103160:intron | 30.0% | |
| ATGATAAGAAATGTGATGCT+CGG | - | chr1_3:10267623-10267642 | Msa0103160:intron | 30.0% | |
| ! | GCCATAGTTTTTATGATGAA+TGG | - | chr1_3:10267896-10267915 | Msa0103160:CDS | 30.0% |
| !!! | GATACTTTTCTATTTTTGCC+AGG | - | chr1_3:10268120-10268139 | Msa0103160:intron | 30.0% |
| ! | AGGTTGTATGCACATTATTT+TGG | + | chr1_3:10268249-10268268 | None:intergenic | 30.0% |
| ACCGATATTTAATTAGCTCA+CGG | - | chr1_3:10268352-10268371 | Msa0103160:intron | 30.0% | |
| TCCGTGAGCTAATTAAATAT+CGG | + | chr1_3:10268356-10268375 | None:intergenic | 30.0% | |
| ATATTTAATTAGCTCACGGA+AGG | - | chr1_3:10268356-10268375 | Msa0103160:intron | 30.0% | |
| TTAAAAATCATAAGAGACGC+AGG | + | chr1_3:10268480-10268499 | None:intergenic | 30.0% | |
| AGTGGATCATGATGATTTAA+TGG | + | chr1_3:10268619-10268638 | None:intergenic | 30.0% | |
| AATGTAAGGAGATGTTTGTG+TGG | + | chr1_3:10265262-10265281 | None:intergenic | 35.0% | |
| ! | CTTAAAACACTGTTGGTAAG+TGG | + | chr1_3:10265316-10265335 | None:intergenic | 35.0% |
| GCTTCAACTTAAAACACTGT+TGG | + | chr1_3:10265323-10265342 | None:intergenic | 35.0% | |
| TAACCGAAATGAAAACTCAG+AGG | - | chr1_3:10265449-10265468 | Msa0103160:intron | 35.0% | |
| ! | CTTCCTCTGAGTTTTCATTT+CGG | + | chr1_3:10265455-10265474 | None:intergenic | 35.0% |
| AAATGAAAACTCAGAGGAAG+AGG | - | chr1_3:10265455-10265474 | Msa0103160:intron | 35.0% | |
| ATTTACAAGAGTTCAACCGT+TGG | - | chr1_3:10265608-10265627 | Msa0103160:intron | 35.0% | |
| AAGCTCTCCCAAACATAATA+TGG | + | chr1_3:10265658-10265677 | None:intergenic | 35.0% | |
| TAAGATCTCTGTAAGGAGTA+GGG | + | chr1_3:10265871-10265890 | None:intergenic | 35.0% | |
| CGAAATCAACATATCAAGAC+CGG | + | chr1_3:10265954-10265973 | None:intergenic | 35.0% | |
| ! | ATTTTGTGATTACACGACTC+CGG | - | chr1_3:10265981-10266000 | Msa0103160:intron | 35.0% |
| ATTGCTTCAGTTGGAAGATA+TGG | - | chr1_3:10266146-10266165 | Msa0103160:intron | 35.0% | |
| TCAGTTGGAAGATATGGATA+TGG | - | chr1_3:10266152-10266171 | Msa0103160:intron | 35.0% | |
| GATGGAATCTGATTTCATGA+TGG | - | chr1_3:10266242-10266261 | Msa0103160:CDS | 35.0% | |
| AAGGTCGATCATGTAATCAA+GGG | + | chr1_3:10266268-10266287 | None:intergenic | 35.0% | |
| AAAATCACACCTTATCATCC+TGG | + | chr1_3:10266302-10266321 | None:intergenic | 35.0% | |
| ! | TGCTAGGCTAAATGGTATTT+TGG | + | chr1_3:10266473-10266492 | None:intergenic | 35.0% |
| !! | ATTAAGCTTGCTAGGCTAAA+TGG | + | chr1_3:10266481-10266500 | None:intergenic | 35.0% |
| ! | TTGCGATTATTAAGCTTGCT+AGG | + | chr1_3:10266489-10266508 | None:intergenic | 35.0% |
| TTAAAGAAGTTCCTAACCTG+GGG | + | chr1_3:10266620-10266639 | None:intergenic | 35.0% | |
| GATTAAAGAAGTTCCTAACC+TGG | + | chr1_3:10266622-10266641 | None:intergenic | 35.0% | |
| TCTATGTAGAACTCCCAAAA+AGG | - | chr1_3:10266737-10266756 | Msa0103160:CDS | 35.0% | |
| ACTTGAAGATTCATATCCCA+GGG | - | chr1_3:10266823-10266842 | Msa0103160:intron | 35.0% | |
| TCTAAATGACATAGCTAACC+AGG | - | chr1_3:10266851-10266870 | Msa0103160:intron | 35.0% | |
| ACTTCTATCAAGTTCTGTAG+AGG | - | chr1_3:10266977-10266996 | Msa0103160:intron | 35.0% | |
| TCTGTAGAGGTTCTCAATAT+TGG | - | chr1_3:10266990-10267009 | Msa0103160:intron | 35.0% | |
| TAGAGGTTCTCAATATTGGA+GGG | - | chr1_3:10266994-10267013 | Msa0103160:intron | 35.0% | |
| CTATATCTGAATTCTTGCCA+AGG | - | chr1_3:10267187-10267206 | Msa0103160:intron | 35.0% | |
| TAAAATTCACGTGGTTTCCT+TGG | + | chr1_3:10267207-10267226 | None:intergenic | 35.0% | |
| GAGGTAGAGTATATAATCCA+CGG | + | chr1_3:10267369-10267388 | None:intergenic | 35.0% | |
| TGGATTATATACTCTACCTC+CGG | - | chr1_3:10267369-10267388 | Msa0103160:intron | 35.0% | |
| TTCGGCATCATTAAAACTGT+TGG | - | chr1_3:10267538-10267557 | Msa0103160:intron | 35.0% | |
| ATATATGCTGGATCTGACAA+TGG | - | chr1_3:10268154-10268173 | Msa0103160:intron | 35.0% | |
| ! | ATTTTCCTCTAGGTACAAGT+TGG | + | chr1_3:10268521-10268540 | None:intergenic | 35.0% |
| ! | TCAAAACTGCATTTTCCTCT+AGG | + | chr1_3:10268531-10268550 | None:intergenic | 35.0% |
| AAAAGACAGAAGTCATTCAG+TGG | + | chr1_3:10268637-10268656 | None:intergenic | 35.0% | |
| AGTTAAATGCTATCTCCTGA+AGG | + | chr1_3:10268704-10268723 | None:intergenic | 35.0% | |
| !!! | TCGTTTTTGGGGTTCTATCT+GGG | + | chr1_3:10265169-10265188 | None:intergenic | 40.0% |
| !!! | ATCGTTTTTGGGGTTCTATC+TGG | + | chr1_3:10265170-10265189 | None:intergenic | 40.0% |
| CGGTTAAGAAGTTCGTTAAG+TGG | + | chr1_3:10265435-10265454 | None:intergenic | 40.0% | |
| ! | CAACGTGAAGCACTTCTTAA+AGG | - | chr1_3:10265498-10265517 | Msa0103160:intron | 40.0% |
| GTAAGATCTCTGTAAGGAGT+AGG | + | chr1_3:10265872-10265891 | None:intergenic | 40.0% | |
| AATTCAGAGCACAAGTAGTC+CGG | - | chr1_3:10265932-10265951 | Msa0103160:intron | 40.0% | |
| TGCAAGGAAAAATTGCACAC+CGG | + | chr1_3:10266003-10266022 | None:intergenic | 40.0% | |
| AGAATCTGAGAAAGTAGCAG+TGG | - | chr1_3:10266179-10266198 | Msa0103160:intron | 40.0% | |
| ! | TGGTAAGAGAGTTGATCAGA+TGG | - | chr1_3:10266224-10266243 | Msa0103160:CDS | 40.0% |
| CAAGGTCGATCATGTAATCA+AGG | + | chr1_3:10266269-10266288 | None:intergenic | 40.0% | |
| TGAAAAGGACCAGGATGATA+AGG | - | chr1_3:10266290-10266309 | Msa0103160:intron | 40.0% | |
| TTTCCAAATGGAATGGAGTG+TGG | + | chr1_3:10266367-10266386 | None:intergenic | 40.0% | |
| ACACTCCATTCCATTTGGAA+AGG | - | chr1_3:10266366-10266385 | Msa0103160:CDS | 40.0% | |
| TAGTTGGAGACCTTTCCAAA+TGG | + | chr1_3:10266379-10266398 | None:intergenic | 40.0% | |
| !! | TCAGAAAAGTGTTCGAGAAG+TGG | + | chr1_3:10266644-10266663 | None:intergenic | 40.0% |
| ! | AACTCCTCCCTTCATCTTTT+AGG | - | chr1_3:10266698-10266717 | Msa0103160:CDS | 40.0% |
| TGAACCTAAAAGATGAAGGG+AGG | + | chr1_3:10266705-10266724 | None:intergenic | 40.0% | |
| GACTTGAAGATTCATATCCC+AGG | - | chr1_3:10266822-10266841 | Msa0103160:intron | 40.0% | |
| CTTGAAGATTCATATCCCAG+GGG | - | chr1_3:10266824-10266843 | Msa0103160:intron | 40.0% | |
| ! | TGTCATTTAGATTTGCCCCT+GGG | + | chr1_3:10266842-10266861 | None:intergenic | 40.0% |
| ! | ATGTCATTTAGATTTGCCCC+TGG | + | chr1_3:10266843-10266862 | None:intergenic | 40.0% |
| CCTCTAATAAATCATCAGCC+TGG | + | chr1_3:10266872-10266891 | None:intergenic | 40.0% | |
| CCAGGCTGATGATTTATTAG+AGG | - | chr1_3:10266869-10266888 | Msa0103160:intron | 40.0% | |
| GTAGAGGTTCTCAATATTGG+AGG | - | chr1_3:10266993-10267012 | Msa0103160:intron | 40.0% | |
| GATATTGCACTTGAAAGACG+CGG | + | chr1_3:10267082-10267101 | None:intergenic | 40.0% | |
| !! | CAGGCATTTTAGAAAGCTTC+TGG | + | chr1_3:10267126-10267145 | None:intergenic | 40.0% |
| !! | CAGAAGCTTTCTAAAATGCC+TGG | - | chr1_3:10267124-10267143 | Msa0103160:intron | 40.0% |
| TTGGATGAAAGAAATGACCG+TGG | - | chr1_3:10267349-10267368 | Msa0103160:intron | 40.0% | |
| TCGTTTGTGTTAAAAGGGCT+TGG | - | chr1_3:10267452-10267471 | Msa0103160:intron | 40.0% | |
| ATTAAAACTGTTGGCAGTGC+AGG | - | chr1_3:10267547-10267566 | Msa0103160:intron | 40.0% | |
| ! | AAATTGGTGGCCTTAAAACC+TGG | - | chr1_3:10267584-10267603 | Msa0103160:intron | 40.0% |
| ! | AATTGGTGGCCTTAAAACCT+GGG | - | chr1_3:10267585-10267604 | Msa0103160:intron | 40.0% |
| ! | CACAACTTTCCCAGGTTTTA+AGG | + | chr1_3:10267597-10267616 | None:intergenic | 40.0% |
| !! | TTTCAGTAGGATTTGCTGGA+AGG | - | chr1_3:10267693-10267712 | Msa0103160:intron | 40.0% |
| !! | TTCAGTAGGATTTGCTGGAA+GGG | - | chr1_3:10267694-10267713 | Msa0103160:intron | 40.0% |
| ACTTGTCTGTCATGATATCC+AGG | - | chr1_3:10267798-10267817 | Msa0103160:CDS | 40.0% | |
| GTTTCTCGAAACAGTCTCTA+AGG | - | chr1_3:10267864-10267883 | Msa0103160:CDS | 40.0% | |
| !! | TATTTTTGCCAGGTCTTGTC+TGG | - | chr1_3:10268130-10268149 | Msa0103160:intron | 40.0% |
| CATATATACCAGACAAGACC+TGG | + | chr1_3:10268141-10268160 | None:intergenic | 40.0% | |
| GTCTTGTCTGGTATATATGC+TGG | - | chr1_3:10268142-10268161 | Msa0103160:intron | 40.0% | |
| !!! | TAGGTACAAGTTGGTTTTGG+TGG | + | chr1_3:10268512-10268531 | None:intergenic | 40.0% |
| !!! | CTCTAGGTACAAGTTGGTTT+TGG | + | chr1_3:10268515-10268534 | None:intergenic | 40.0% |
| CAAAACCAACTTGTACCTAG+AGG | - | chr1_3:10268513-10268532 | Msa0103160:intron | 40.0% | |
| TTTGATGAACCTGCAAGCAA+AGG | + | chr1_3:10268668-10268687 | None:intergenic | 40.0% | |
| AAAGACACTTCAAGTCCTTC+AGG | - | chr1_3:10268686-10268705 | Msa0103160:CDS | 40.0% | |
| GAGATGTTTGTGTGGATAGC+GGG | + | chr1_3:10265254-10265273 | None:intergenic | 45.0% | |
| GGAGATGTTTGTGTGGATAG+CGG | + | chr1_3:10265255-10265274 | None:intergenic | 45.0% | |
| AGCGAAACGAGTTACGAAGT+TGG | - | chr1_3:10265399-10265418 | Msa0103160:intron | 45.0% | |
| GAAACGAGTTACGAAGTTGG+TGG | - | chr1_3:10265402-10265421 | Msa0103160:intron | 45.0% | |
| ! | CGTGAAGCACTTCTTAAAGG+TGG | - | chr1_3:10265501-10265520 | Msa0103160:intron | 45.0% |
| TGAGAAAGTAGCAGTGGAGT+TGG | - | chr1_3:10266185-10266204 | Msa0103160:intron | 45.0% | |
| TTGGCTGCACAAGGAGTTAT+TGG | - | chr1_3:10266204-10266223 | Msa0103160:CDS | 45.0% | |
| CATGATCGACCTTGCTGAAA+AGG | - | chr1_3:10266275-10266294 | Msa0103160:intron | 45.0% | |
| CATCCACACTCCATTCCATT+TGG | - | chr1_3:10266361-10266380 | Msa0103160:intron | 45.0% | |
| GGAGACCTTTCCAAATGGAA+TGG | + | chr1_3:10266374-10266393 | None:intergenic | 45.0% | |
| AACTAAAAAATGCCCACCCC+AGG | - | chr1_3:10266601-10266620 | Msa0103160:intron | 45.0% | |
| ATGAAGGGAGGAGTTCACAT+TGG | + | chr1_3:10266693-10266712 | None:intergenic | 45.0% | |
| !! | GCTGGTGGCGGTTTATTTAA+AGG | - | chr1_3:10266792-10266811 | Msa0103160:CDS | 45.0% |
| ! | AGTTTTCGATCTGGCACAAC+AGG | + | chr1_3:10267271-10267290 | None:intergenic | 45.0% |
| ! | CTTGCAAGCAGTTTTCGATC+TGG | + | chr1_3:10267280-10267299 | None:intergenic | 45.0% |
| CAGATCGAAAACTGCTTGCA+AGG | - | chr1_3:10267278-10267297 | Msa0103160:CDS | 45.0% | |
| AGAAGAAGCCCGTGATATGA+TGG | - | chr1_3:10267315-10267334 | Msa0103160:CDS | 45.0% | |
| GAAGAAGCCCGTGATATGAT+GGG | - | chr1_3:10267316-10267335 | Msa0103160:CDS | 45.0% | |
| TCACATCAACATACCTCAGC+CGG | + | chr1_3:10267391-10267410 | None:intergenic | 45.0% | |
| AAAACCTGGGAAAGTTGTGC+TGG | - | chr1_3:10267598-10267617 | Msa0103160:intron | 45.0% | |
| ATATCCAGCACAACTTTCCC+AGG | + | chr1_3:10267605-10267624 | None:intergenic | 45.0% | |
| GTGATGCTCGGAAAAGATGA+AGG | - | chr1_3:10267635-10267654 | Msa0103160:intron | 45.0% | |
| ! | TGGCAACGATGATGATGACA+GGG | - | chr1_3:10267670-10267689 | Msa0103160:intron | 45.0% |
| GATGATGACAGGGTTTCAGT+AGG | - | chr1_3:10267680-10267699 | Msa0103160:intron | 45.0% | |
| AGGGTTTCAGTAGGATTTGC+TGG | - | chr1_3:10267689-10267708 | Msa0103160:intron | 45.0% | |
| ACTGTTTCGAGAAACATGCC+CGG | + | chr1_3:10267859-10267878 | None:intergenic | 45.0% | |
| ! | TCAACTGGAAGTGCAAACAC+AGG | + | chr1_3:10268102-10268121 | None:intergenic | 45.0% |
| TGGTATCACTGCACAACATC+TGG | - | chr1_3:10268174-10268193 | Msa0103160:intron | 45.0% | |
| TCACTGCACAACATCTGGAA+TGG | - | chr1_3:10268179-10268198 | Msa0103160:intron | 45.0% | |
| ! | CACTGCACAACATCTGGAAT+GGG | - | chr1_3:10268180-10268199 | Msa0103160:intron | 45.0% |
| TTAGCTCACGGAAGGTAACT+AGG | - | chr1_3:10268364-10268383 | Msa0103160:intron | 45.0% | |
| TGTTCCTTTCCTTTGCTTGC+AGG | - | chr1_3:10268656-10268675 | Msa0103160:CDS | 45.0% | |
| TGAACCTGCAAGCAAAGGAA+AGG | + | chr1_3:10268663-10268682 | None:intergenic | 45.0% | |
| TTCGTAACTCGTTTCGCTGC+TGG | + | chr1_3:10265397-10265416 | None:intergenic | 50.0% | |
| !! | ACGAGTTACGAAGTTGGTGG+TGG | - | chr1_3:10265405-10265424 | Msa0103160:intron | 50.0% |
| GTAAGGAGTAGGGTCATGTC+TGG | + | chr1_3:10265861-10265880 | None:intergenic | 50.0% | |
| ! | CATCCTGGTCCTTTTCAGCA+AGG | + | chr1_3:10266287-10266306 | None:intergenic | 50.0% |
| ATCGCAACACACACACATGC+TGG | - | chr1_3:10266502-10266521 | Msa0103160:intron | 50.0% | |
| TCGCAACACACACACATGCT+GGG | - | chr1_3:10266503-10266522 | Msa0103160:intron | 50.0% | |
| AAAAATGCCCACCCCAGGTT+AGG | - | chr1_3:10266606-10266625 | Msa0103160:intron | 50.0% | |
| AGAAGTTCCTAACCTGGGGT+GGG | + | chr1_3:10266616-10266635 | None:intergenic | 50.0% | |
| AAGAAGTTCCTAACCTGGGG+TGG | + | chr1_3:10266617-10266636 | None:intergenic | 50.0% | |
| ! | AAGCCCGTGATATGATGGGA+GGG | - | chr1_3:10267320-10267339 | Msa0103160:CDS | 50.0% |
| !! | TATGATGGGAGGGGGGATTT+TGG | - | chr1_3:10267330-10267349 | Msa0103160:CDS | 50.0% |
| ATATACTCTACCTCCGGCTG+AGG | - | chr1_3:10267375-10267394 | Msa0103160:intron | 50.0% | |
| ! | GATGAAGGTGCAGACAACAC+TGG | - | chr1_3:10267650-10267669 | Msa0103160:intron | 50.0% |
| ! | CTGGCAACGATGATGATGAC+AGG | - | chr1_3:10267669-10267688 | Msa0103160:intron | 50.0% |
| GTGAGTCGAATTGGATGACG+TGG | - | chr1_3:10267716-10267735 | Msa0103160:intron | 50.0% | |
| GATATCCAGGCAAGTGTGAC+AGG | - | chr1_3:10267811-10267830 | Msa0103160:CDS | 50.0% | |
| CTGTTTCGAGAAACATGCCC+GGG | + | chr1_3:10267858-10267877 | None:intergenic | 50.0% | |
| AGTGCAAACACAGGCAGAGA+AGG | + | chr1_3:10268093-10268112 | None:intergenic | 50.0% | |
| !!! | AGTTGGTTTTGGTGGCAACG+TGG | + | chr1_3:10268504-10268523 | None:intergenic | 50.0% |
| CGACCTTGCTGAAAAGGACC+AGG | - | chr1_3:10266281-10266300 | Msa0103160:intron | 55.0% | |
| GATGCAGCGCAAGTCACTGT+TGG | - | chr1_3:10266547-10266566 | Msa0103160:intron | 55.0% | |
| TTGTTACGCCGAGTTGCAGC+TGG | - | chr1_3:10266774-10266793 | Msa0103160:CDS | 55.0% | |
| ! | GAAGCCCGTGATATGATGGG+AGG | - | chr1_3:10267319-10267338 | Msa0103160:CDS | 55.0% |
| ! | AGCCCGTGATATGATGGGAG+GGG | - | chr1_3:10267321-10267340 | Msa0103160:CDS | 55.0% |
| TCCCCCCTCCCATCATATCA+CGG | + | chr1_3:10267327-10267346 | None:intergenic | 55.0% | |
| CATCAACATACCTCAGCCGG+AGG | + | chr1_3:10267388-10267407 | None:intergenic | 55.0% | |
| GCTGGAAGGGTGAGTCGAAT+TGG | - | chr1_3:10267707-10267726 | Msa0103160:intron | 55.0% | |
| TCCAGGCAAGTGTGACAGGA+CGG | - | chr1_3:10267815-10267834 | Msa0103160:CDS | 55.0% | |
| GCAGTGGAGTTGGCTGCACA+AGG | - | chr1_3:10266195-10266214 | Msa0103160:intron | 60.0% | |
| TTACGCCGAGTTGCAGCTGG+TGG | - | chr1_3:10266777-10266796 | Msa0103160:CDS | 60.0% | |
| AACCGCCACCAGCTGCAACT+CGG | + | chr1_3:10266785-10266804 | None:intergenic | 60.0% | |
| ! | GCCCGTGATATGATGGGAGG+GGG | - | chr1_3:10267322-10267341 | Msa0103160:CDS | 60.0% |
| CCCCCCTCCCATCATATCAC+GGG | + | chr1_3:10267326-10267345 | None:intergenic | 60.0% | |
| ! | CCCGTGATATGATGGGAGGG+GGG | - | chr1_3:10267323-10267342 | Msa0103160:CDS | 60.0% |
| TCCGTCCTGTCACACTTGCC+TGG | + | chr1_3:10267819-10267838 | None:intergenic | 60.0% | |
| AGAAACATGCCCGGGCGTAC+GGG | + | chr1_3:10267850-10267869 | None:intergenic | 60.0% | |
| GAGAAACATGCCCGGGCGTA+CGG | + | chr1_3:10267851-10267870 | None:intergenic | 60.0% | |
| GAAGCCACATCCCGTACGCC+CGG | - | chr1_3:10267837-10267856 | Msa0103160:CDS | 65.0% | |
| AAGCCACATCCCGTACGCCC+GGG | - | chr1_3:10267838-10267857 | Msa0103160:CDS | 65.0% | |
| CGCCGAGTTGCAGCTGGTGG+CGG | - | chr1_3:10266780-10266799 | Msa0103160:CDS | 70.0% | |
| ATGCCCGGGCGTACGGGATG+TGG | + | chr1_3:10267844-10267863 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 10265159 | 10268922 | 10265159 | ID=Msa0103160;Name=Msa0103160 |
| chr1_3 | mRNA | 10265159 | 10268922 | 10265159 | ID=Msa0103160-mRNA-1;Parent=Msa0103160;Name=Msa0103160-mRNA-1;_AED=0.07;_eAED=0.07;_QI=63|0.87|0.88|1|1|1|9|197|430 |
| chr1_3 | exon | 10265159 | 10265403 | 10265159 | ID=Msa0103160-mRNA-1:exon:4256;Parent=Msa0103160-mRNA-1 |
| chr1_3 | exon | 10265880 | 10265939 | 10265880 | ID=Msa0103160-mRNA-1:exon:4255;Parent=Msa0103160-mRNA-1 |
| chr1_3 | exon | 10266196 | 10266261 | 10266196 | ID=Msa0103160-mRNA-1:exon:4254;Parent=Msa0103160-mRNA-1 |
| chr1_3 | exon | 10266366 | 10266512 | 10266366 | ID=Msa0103160-mRNA-1:exon:4253;Parent=Msa0103160-mRNA-1 |
| chr1_3 | exon | 10266685 | 10266828 | 10266685 | ID=Msa0103160-mRNA-1:exon:4252;Parent=Msa0103160-mRNA-1 |
| chr1_3 | exon | 10267191 | 10267361 | 10267191 | ID=Msa0103160-mRNA-1:exon:4251;Parent=Msa0103160-mRNA-1 |
| chr1_3 | exon | 10267459 | 10267527 | 10267459 | ID=Msa0103160-mRNA-1:exon:4250;Parent=Msa0103160-mRNA-1 |
| chr1_3 | exon | 10267770 | 10268015 | 10267770 | ID=Msa0103160-mRNA-1:exon:4249;Parent=Msa0103160-mRNA-1 |
| chr1_3 | exon | 10268518 | 10268922 | 10268518 | ID=Msa0103160-mRNA-1:exon:4248;Parent=Msa0103160-mRNA-1 |
| chr1_3 | five_prime_UTR | 10268860 | 10268922 | 10268860 | ID=Msa0103160-mRNA-1:five_prime_utr;Parent=Msa0103160-mRNA-1 |
| chr1_3 | CDS | 10268518 | 10268859 | 10268518 | ID=Msa0103160-mRNA-1:cds;Parent=Msa0103160-mRNA-1 |
| chr1_3 | CDS | 10267770 | 10268015 | 10267770 | ID=Msa0103160-mRNA-1:cds;Parent=Msa0103160-mRNA-1 |
| chr1_3 | CDS | 10267459 | 10267527 | 10267459 | ID=Msa0103160-mRNA-1:cds;Parent=Msa0103160-mRNA-1 |
| chr1_3 | CDS | 10267191 | 10267361 | 10267191 | ID=Msa0103160-mRNA-1:cds;Parent=Msa0103160-mRNA-1 |
| chr1_3 | CDS | 10266685 | 10266828 | 10266685 | ID=Msa0103160-mRNA-1:cds;Parent=Msa0103160-mRNA-1 |
| chr1_3 | CDS | 10266366 | 10266512 | 10266366 | ID=Msa0103160-mRNA-1:cds;Parent=Msa0103160-mRNA-1 |
| chr1_3 | CDS | 10266196 | 10266261 | 10266196 | ID=Msa0103160-mRNA-1:cds;Parent=Msa0103160-mRNA-1 |
| chr1_3 | CDS | 10265880 | 10265939 | 10265880 | ID=Msa0103160-mRNA-1:cds;Parent=Msa0103160-mRNA-1 |
| chr1_3 | CDS | 10265356 | 10265403 | 10265356 | ID=Msa0103160-mRNA-1:cds;Parent=Msa0103160-mRNA-1 |
| chr1_3 | three_prime_UTR | 10265159 | 10265355 | 10265159 | ID=Msa0103160-mRNA-1:three_prime_utr;Parent=Msa0103160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
