AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0838100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0838100 MtrunA17_Chr5g0405451 92.325 443 26 3 1 439 1 439 0.0 786
Msa0838100 MtrunA17_Chr5g0406201 75.705 461 67 7 8 428 6 461 0.0 639
Msa0838100 MtrunA17_Chr2g0303671 46.154 182 97 1 245 425 123 304 4.96e-52 177
Msa0838100 MtrunA17_Chr5g0418551 33.088 136 91 0 270 405 91 226 1.99e-16 78.6
Msa0838100 MtrunA17_Chr5g0418551 32.353 136 89 1 273 405 58 193 3.02e-15 75.1
Msa0838100 MtrunA17_Chr5g0409271 31.387 137 93 1 273 408 15 151 4.04e-14 72.4
Msa0838100 MtrunA17_Chr4g0049351 29.240 171 113 3 245 414 40 203 3.44e-12 68.2
Msa0838100 MtrunA17_Chr4g0063141 33.088 136 88 2 273 407 555 688 4.25e-12 68.6
Msa0838100 MtrunA17_Chr7g0221441 38.095 84 52 0 334 417 739 822 7.85e-12 67.4
Msa0838100 MtrunA17_Chr6g0461061 28.649 185 130 2 254 437 195 378 1.46e-11 66.2
Msa0838100 MtrunA17_Chr3g0138141 28.049 246 135 6 218 435 62 293 1.62e-11 65.9
Msa0838100 MtrunA17_Chr5g0434371 35.714 154 93 2 272 425 591 738 1.66e-11 66.6
Msa0838100 MtrunA17_Chr7g0274241 27.632 152 108 2 261 412 114 263 6.26e-11 64.3
Msa0838100 MtrunA17_Chr3g0127131 33.000 100 65 1 311 408 244 343 6.42e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0838100 AT5G66055.1 52.482 423 185 6 23 433 7 425 3.17e-149 431
Msa0838100 AT5G66055.2 49.300 357 166 5 23 368 7 359 2.09e-112 335
Msa0838100 AT5G40160.1 47.802 182 94 1 245 425 127 308 7.56e-53 180
Msa0838100 AT5G40160.2 47.436 156 81 1 245 399 127 282 8.94e-44 155
Msa0838100 AT2G25600.1 32.857 140 92 1 273 412 581 718 5.09e-13 71.6
Msa0838100 AT4G27780.1 40.506 79 47 0 330 408 261 339 8.40e-13 69.7
Msa0838100 AT5G53470.1 36.709 79 50 0 330 408 246 324 1.22e-11 66.2
Msa0838100 AT2G14255.1 31.333 150 100 2 261 407 83 232 1.43e-11 66.6
Msa0838100 AT4G19150.1 26.087 161 114 2 273 432 20 176 1.78e-11 64.3
Msa0838100 AT2G03430.1 29.710 138 97 0 268 405 82 219 2.20e-11 64.3
Msa0838100 AT5G13300.1 33.663 101 65 1 324 424 718 816 2.49e-11 66.2

Find 89 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATTATTTGTAGGATAAA+TGG 0.153410 5_4:+12333578 Msa0838100:intron
TTCTTCTTTGAAATTGGTTT+TGG 0.193195 5_4:-12331695 None:intergenic
AATCCTAGATGGGCTGTTTA+TGG 0.219355 5_4:+12332022 Msa0838100:CDS
CAGTTGAAGCCTTTGGTTCT+TGG 0.229120 5_4:+12331926 Msa0838100:CDS
AGAATCTTGTTCCTGATAAA+TGG 0.230329 5_4:+12331741 Msa0838100:CDS
TGAACTTCTTTCCATTTATC+AGG 0.246691 5_4:-12331752 None:intergenic
GCTCTTTACAAAGCGGTAAT+TGG 0.258042 5_4:+12333789 Msa0838100:CDS
GTGAAGCTTCTGCTGATTAA+AGG 0.274738 5_4:+12334602 Msa0838100:CDS
GGCTTATAAAGAAGCTAAAT+TGG 0.277637 5_4:+12331901 Msa0838100:CDS
CATATGGAAACTTTAGCTTT+AGG 0.289789 5_4:+12335994 Msa0838100:three_prime_UTR
TATCGATTTGAATGAGTATA+AGG 0.317941 5_4:+12331880 Msa0838100:CDS
GTCTGTCGGGAGCGTCTATA+AGG 0.356780 5_4:-12335869 None:intergenic
GACTCTGCTGCTATGAAAAC+TGG 0.356814 5_4:+12332091 Msa0838100:CDS
ATTGGCTCAGTTGAAGCCTT+TGG 0.368198 5_4:+12331919 Msa0838100:CDS
TGATGTTGATATTAATGTTA+TGG 0.368619 5_4:+12333663 Msa0838100:CDS
CAATGTGGATATAAATCTTC+AGG 0.373575 5_4:+12334432 Msa0838100:CDS
AAGAAGAGTGTGTGGGGTTG+TGG 0.374765 5_4:-12331452 None:intergenic
TCTCAAGAGACTGTTGGTTA+TGG 0.380991 5_4:-12333823 None:intergenic
TGATATTAATGTTATGGATA+AGG 0.387981 5_4:+12333669 Msa0838100:CDS
ATCCTAGATGGGCTGTTTAT+GGG 0.393025 5_4:+12332023 Msa0838100:CDS
TTCAATCCATAACTAGTTAC+GGG 0.396857 5_4:-12331370 None:intergenic
TAGTGCCTAGGAATCCTAGA+TGG 0.397952 5_4:+12332011 Msa0838100:CDS
ACAAGAGTACTTTAATTGTT+CGG 0.397986 5_4:-12334405 None:intergenic
CTCACATTATCTTGCACAAA+CGG 0.408366 5_4:-12333858 None:intergenic
ATTCAATCCATAACTAGTTA+CGG 0.417324 5_4:-12331371 None:intergenic
AAATGTATTCAAAATATGAT+AGG 0.418620 5_4:+12336041 Msa0838100:three_prime_UTR
TCAAAACCCGTAACTAGTTA+TGG 0.418744 5_4:+12331364 Msa0838100:five_prime_UTR
GAAGCCTTTGGTTCTTGGTA+AGG 0.419470 5_4:+12331931 Msa0838100:CDS
AGATGGGCTGTTTATGGGAG+AGG 0.423749 5_4:+12332028 Msa0838100:CDS
TTCTTCTTATCCCCGTCTGT+CGG 0.435105 5_4:-12335883 None:intergenic
TTGCTGTGTCTTAGGATGGC+TGG 0.440960 5_4:+12334537 Msa0838100:intron
AAGAGGGTTGATTCCTTTGA+GGG 0.442733 5_4:+12331856 Msa0838100:CDS
CGGAGACTGTCTTGTCTTCG+AGG 0.443191 5_4:+12331610 Msa0838100:CDS
AAAGAGGGTTGATTCCTTTG+AGG 0.450936 5_4:+12331855 Msa0838100:CDS
TCTTCTTATCCCCGTCTGTC+GGG 0.451834 5_4:-12335882 None:intergenic
ATGATTTGGACTGACAAGTA+AGG 0.452938 5_4:+12335919 Msa0838100:three_prime_UTR
GTCGTCCTAGGTTGTTTACC+AGG 0.463875 5_4:+12333225 Msa0838100:CDS
ACGAGGTTGTTGTCGGAAGT+TGG 0.464298 5_4:-12331659 None:intergenic
GCAAGCAGCTCTTCAGCATA+TGG 0.476206 5_4:+12335978 Msa0838100:three_prime_UTR
AAAGTTATGAAGAAGAAAAG+AGG 0.482187 5_4:+12331839 Msa0838100:CDS
ACAGCCCATCTAGGATTCCT+AGG 0.499470 5_4:-12332016 None:intergenic
TTTATCAGGAACAAGATTCT+CGG 0.500203 5_4:-12331738 None:intergenic
GTTGTTTACGAGGTTGTTGT+CGG 0.500244 5_4:-12331666 None:intergenic
CTCGACCTTTGCCTTTACTC+TGG 0.500612 5_4:+12335803 Msa0838100:CDS
CTCCCATAAACAGCCCATCT+AGG 0.507590 5_4:-12332025 None:intergenic
GTTGTTTACCAGGGAGGAGA+GGG 0.513400 5_4:+12333235 Msa0838100:CDS
CTTCGTAGTTGTTGTCATGT+TGG 0.515970 5_4:-12331577 None:intergenic
AAGTTATGAAGAAGAAAAGA+GGG 0.517219 5_4:+12331840 Msa0838100:CDS
AGGTGGGTTGAGTGATGAGA+GGG 0.518172 5_4:+12331988 Msa0838100:CDS
GAAGTAGCAACTGACAAGTC+TGG 0.525281 5_4:-12333278 None:intergenic
CGAGTTTCTCAAGAGACTGT+TGG 0.526379 5_4:-12333829 None:intergenic
ATGGAGAGAAGAAGAGTGTG+TGG 0.526930 5_4:-12331460 None:intergenic
TGGAGAGAAGAAGAGTGTGT+GGG 0.527588 5_4:-12331459 None:intergenic
GACTGTCTTGTCTTCGAGGA+AGG 0.528284 5_4:+12331614 Msa0838100:CDS
TGTTTATGGGAGAGGTTTCG+AGG 0.529560 5_4:+12332036 Msa0838100:CDS
GAGGATGATGAAGAAGAAGA+AGG 0.531032 5_4:+12331968 Msa0838100:CDS
GATGATGAAGAAGAAGAAGG+TGG 0.541756 5_4:+12331971 Msa0838100:CDS
TATAGACGCTCCCGACAGAC+GGG 0.545707 5_4:+12335872 Msa0838100:CDS
CAACAAATCCCTCTCCTCCC+TGG 0.550164 5_4:-12333243 None:intergenic
GTCTGAACAGCAAGATGTAA+TGG 0.552014 5_4:-12334563 None:intergenic
ATGATGAAGAAGAAGAAGGT+GGG 0.557970 5_4:+12331972 Msa0838100:CDS
AAGGTGGGTTGAGTGATGAG+AGG 0.562680 5_4:+12331987 Msa0838100:CDS
TGATTTGGACTGACAAGTAA+GGG 0.568870 5_4:+12335920 Msa0838100:three_prime_UTR
GAGTAAAGGCAAAGGTCGAG+TGG 0.584489 5_4:-12335800 None:intergenic
TTGTACAGCATAGTGAATCA+AGG 0.589301 5_4:-12334371 None:intergenic
AGTGCCTAGGAATCCTAGAT+GGG 0.592539 5_4:+12332012 Msa0838100:CDS
AGATTGAAACTTGCGAGGTG+TGG 0.593440 5_4:-12331504 None:intergenic
CAACAGTCTCTTGAGAAACT+CGG 0.594452 5_4:+12333830 Msa0838100:CDS
TTATAGACGCTCCCGACAGA+CGG 0.598131 5_4:+12335871 Msa0838100:CDS
GGTTGTTTACCAGGGAGGAG+AGG 0.600499 5_4:+12333234 Msa0838100:CDS
TCGTCCTAGGTTGTTTACCA+GGG 0.600545 5_4:+12333226 Msa0838100:CDS
AGTACTCTTGTTGTACAATG+TGG 0.602365 5_4:+12334417 Msa0838100:CDS
GAAACTTTAGCTTTAGGACA+AGG 0.609493 5_4:+12336000 Msa0838100:three_prime_UTR
TTCAAATCGATATCCCTCAA+AGG 0.614790 5_4:-12331869 None:intergenic
TAAACATAACGAAGAAAGAA+CGG 0.615305 5_4:+12331783 Msa0838100:CDS
GTGATGAGAGGGTAGTGCCT+AGG 0.618143 5_4:+12331999 Msa0838100:CDS
TGAAAAGATTGAAACTTGCG+AGG 0.619228 5_4:-12331509 None:intergenic
CTTGCAGCAAAAGTGTGCAA+AGG 0.619949 5_4:-12333604 None:intergenic
TCCTAGGTTGTTTACCAGGG+AGG 0.641807 5_4:+12333229 Msa0838100:CDS
GGAGAGAAGAAGAGTGTGTG+GGG 0.642297 5_4:-12331458 None:intergenic
AAAACCTTACCAAGAACCAA+AGG 0.642740 5_4:-12331935 None:intergenic
AACTACGAAGAACACATCAT+CGG 0.651971 5_4:+12331590 Msa0838100:CDS
TCCTCCCTGGTAAACAACCT+AGG 0.653160 5_4:-12333230 None:intergenic
TTGTGGATTATGAACAAGTG+TGG 0.665151 5_4:-12331435 None:intergenic
TTTGACCAGAGTAAAGGCAA+AGG 0.667685 5_4:-12335808 None:intergenic
TTTGATCGCTCTTTACAAAG+CGG 0.678914 5_4:+12333782 Msa0838100:CDS
ATAGACGCTCCCGACAGACG+GGG 0.691778 5_4:+12335873 Msa0838100:CDS
TCTGCTGCTATGAAAACTGG+AGG 0.737144 5_4:+12332094 Msa0838100:CDS
TACAGCATAGTGAATCAAGG+TGG 0.739803 5_4:-12334368 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATTTATAAAATAGAAG+CGG + chr5_4:12334970-12334989 Msa0838100:intron 10.0%
!!! AATTTTTTCATAAAAAAAGA+AGG + chr5_4:12336071-12336090 Msa0838100:three_prime_UTR 10.0%
!! ACTATATGTTAATAGATTAA+GGG - chr5_4:12334267-12334286 None:intergenic 15.0%
!! AACTATATGTTAATAGATTA+AGG - chr5_4:12334268-12334287 None:intergenic 15.0%
!! TTACATTGATAGATTAATAT+AGG - chr5_4:12334671-12334690 None:intergenic 15.0%
!! ATAATTTATAAAATAGAAGC+GGG + chr5_4:12334971-12334990 Msa0838100:intron 15.0%
!!! AAATAAAACTTTTGATGATT+TGG + chr5_4:12335905-12335924 Msa0838100:exon 15.0%
!! AAATGTATTCAAAATATGAT+AGG + chr5_4:12336041-12336060 Msa0838100:three_prime_UTR 15.0%
!! TAAAAATGTGATTTCTAATT+TGG + chr5_4:12336118-12336137 Msa0838100:three_prime_UTR 15.0%
!!! TTCTTTTTCTTCTTTGAAAT+TGG - chr5_4:12331704-12331723 None:intergenic 20.0%
!!! TTTGTATATACAATCTGTTT+TGG + chr5_4:12332120-12332139 Msa0838100:intron 20.0%
!! AAAACTAAAAGTTGTTACAT+AGG - chr5_4:12332182-12332201 None:intergenic 20.0%
!!! TATGGACATTTTGAAAAATA+AGG + chr5_4:12332673-12332692 Msa0838100:intron 20.0%
!!! ATGGACATTTTGAAAAATAA+GGG + chr5_4:12332674-12332693 Msa0838100:intron 20.0%
!!! TGTTGGTTAAAACAAATTTA+TGG + chr5_4:12332729-12332748 Msa0838100:intron 20.0%
!!! TTATATCTCAACTTTTTCAT+AGG - chr5_4:12332807-12332826 None:intergenic 20.0%
!! ATGAAAAAGTTGAGATATAA+AGG + chr5_4:12332807-12332826 Msa0838100:intron 20.0%
!! TAACAGTACAAAATATAATG+AGG - chr5_4:12333355-12333374 None:intergenic 20.0%
!!! ATTATATTTTGTACTGTTAC+CGG + chr5_4:12333356-12333375 Msa0838100:intron 20.0%
!!! CTCTATATTTATGTTTTCAA+TGG + chr5_4:12333549-12333568 Msa0838100:intron 20.0%
!! TGATGTTGATATTAATGTTA+TGG + chr5_4:12333663-12333682 Msa0838100:CDS 20.0%
!! TGATATTAATGTTATGGATA+AGG + chr5_4:12333669-12333688 Msa0838100:CDS 20.0%
!! CATGAATACTAATTTATACA+CGG + chr5_4:12333694-12333713 Msa0838100:intron 20.0%
!! AAACACAATAGTTTAAATAG+AGG - chr5_4:12333740-12333759 None:intergenic 20.0%
!!! TGTTTTGTTTTACTTTTTCA+AGG + chr5_4:12333755-12333774 Msa0838100:intron 20.0%
!! TGATCAGAAATTAAAAAACA+AGG + chr5_4:12334628-12334647 Msa0838100:CDS 20.0%
!! AAAAAGGGAAAAAATACAAT+GGG - chr5_4:12334793-12334812 None:intergenic 20.0%
!! AAAAAAGGGAAAAAATACAA+TGG - chr5_4:12334794-12334813 None:intergenic 20.0%
!! AGCCTTTCAAAAAAAAAAAA+GGG + chr5_4:12334863-12334882 Msa0838100:intron 20.0%
!!! AATTCTTTAGAAAATAGAAG+TGG + chr5_4:12335103-12335122 Msa0838100:intron 20.0%
!!! AAAACTTTCAACTGTTATTT+AGG + chr5_4:12335331-12335350 Msa0838100:intron 20.0%
!!! TTTTTTTTTTATCCAAGCAT+GGG - chr5_4:12335412-12335431 None:intergenic 20.0%
!!! TTTTTTTTTTTATCCAAGCA+TGG - chr5_4:12335413-12335432 None:intergenic 20.0%
!! AACTAAATATTCATCAATCA+CGG - chr5_4:12335551-12335570 None:intergenic 20.0%
!!! ATATCATAATATTTTGTCTG+TGG + chr5_4:12335634-12335653 Msa0838100:intron 20.0%
!! AAATATCACTGTAAAAGAAA+TGG - chr5_4:12335739-12335758 None:intergenic 20.0%
! ATTCAATCCATAACTAGTTA+CGG - chr5_4:12331374-12331393 None:intergenic 25.0%
!!! TTCTTCTTTGAAATTGGTTT+TGG - chr5_4:12331698-12331717 None:intergenic 25.0%
! TAAACATAACGAAGAAAGAA+CGG + chr5_4:12331783-12331802 Msa0838100:CDS 25.0%
! AAAGTTATGAAGAAGAAAAG+AGG + chr5_4:12331839-12331858 Msa0838100:CDS 25.0%
! AAGTTATGAAGAAGAAAAGA+GGG + chr5_4:12331840-12331859 Msa0838100:CDS 25.0%
!!! TATCGATTTGAATGAGTATA+AGG + chr5_4:12331880-12331899 Msa0838100:CDS 25.0%
!!! TATTTTTGTTAATGCTGTTG+AGG + chr5_4:12332146-12332165 Msa0838100:intron 25.0%
! TTGTATTGCTCTTATTGTTT+AGG + chr5_4:12332451-12332470 Msa0838100:intron 25.0%
! TGTATTGCTCTTATTGTTTA+GGG + chr5_4:12332452-12332471 Msa0838100:intron 25.0%
!!! TATGCTTGTTAGATAACTTT+TGG + chr5_4:12332598-12332617 Msa0838100:intron 25.0%
!!! TTGGATTTGCTTTTGATTTA+TGG + chr5_4:12332701-12332720 Msa0838100:intron 25.0%
!!! TGGATTTGCTTTTGATTTAT+GGG + chr5_4:12332702-12332721 Msa0838100:intron 25.0%
!! TGGATCATTTTATTCATTGA+TGG + chr5_4:12333092-12333111 Msa0838100:intron 25.0%
!! TATTCATTGATGGTTAAATC+CGG + chr5_4:12333102-12333121 Msa0838100:intron 25.0%
! TTCTCATTGTTTGCAATATA+TGG + chr5_4:12333152-12333171 Msa0838100:intron 25.0%
! TTACTTCAACATCAAAACAA+AGG - chr5_4:12333404-12333423 None:intergenic 25.0%
!!! TGTTGCATTTTTTTCAATGT+TGG + chr5_4:12333466-12333485 Msa0838100:intron 25.0%
! CTCATTATTTGTAGGATAAA+TGG + chr5_4:12333578-12333597 Msa0838100:intron 25.0%
!!! TACTTTTAGAATCTTTGTTG+CGG + chr5_4:12333638-12333657 Msa0838100:CDS 25.0%
!!! TTGTTTTACTTTTTCAAGGA+TGG + chr5_4:12333759-12333778 Msa0838100:intron 25.0%
! GTAAGAAAATCAACAGATAA+AGG - chr5_4:12333929-12333948 None:intergenic 25.0%
! AATATGCTGAAAACAACTTA+TGG + chr5_4:12334149-12334168 Msa0838100:intron 25.0%
!!! ACAAGAGTACTTTAATTGTT+CGG - chr5_4:12334408-12334427 None:intergenic 25.0%
!! TGAATATAGATGCTTTTAAC+TGG + chr5_4:12334720-12334739 Msa0838100:intron 25.0%
! CAGCCTTTCAAAAAAAAAAA+AGG + chr5_4:12334862-12334881 Msa0838100:intron 25.0%
!!! GACCCTTTTTTTTTTTTGAA+AGG - chr5_4:12334868-12334887 None:intergenic 25.0%
! CAAAAAAAAAAAAGGGTCAT+TGG + chr5_4:12334870-12334889 Msa0838100:intron 25.0%
!! ACATGTATTCTTTAGAAAAC+AGG + chr5_4:12335166-12335185 Msa0838100:intron 25.0%
! CTAAGTCATTAAAAACCTAT+CGG + chr5_4:12335298-12335317 Msa0838100:intron 25.0%
!!! ATTTATCTTTTGTTTGTCTC+AGG + chr5_4:12335766-12335785 Msa0838100:intron 25.0%
TTCAATCCATAACTAGTTAC+GGG - chr5_4:12331373-12331392 None:intergenic 30.0%
!!! TTGGTTTTTTGTTGTTTACG+AGG - chr5_4:12331679-12331698 None:intergenic 30.0%
AAAGAAGAAAAAGAAGACAG+TGG + chr5_4:12331709-12331728 Msa0838100:CDS 30.0%
TTTATCAGGAACAAGATTCT+CGG - chr5_4:12331741-12331760 None:intergenic 30.0%
AGAATCTTGTTCCTGATAAA+TGG + chr5_4:12331741-12331760 Msa0838100:CDS 30.0%
TGAACTTCTTTCCATTTATC+AGG - chr5_4:12331755-12331774 None:intergenic 30.0%
GGCTTATAAAGAAGCTAAAT+TGG + chr5_4:12331901-12331920 Msa0838100:CDS 30.0%
! TAAGGTTTTTGTTGAGAAAG+AGG + chr5_4:12331949-12331968 Msa0838100:CDS 30.0%
CAAACACATGTATTTACGTT+TGG + chr5_4:12332247-12332266 Msa0838100:intron 30.0%
TGACACAATAATCTATGAAG+CGG - chr5_4:12332322-12332341 None:intergenic 30.0%
!! TATGAAATGTATTGGTGTCA+GGG + chr5_4:12332346-12332365 Msa0838100:intron 30.0%
!! GACATTTTGAAAAATAAGGG+TGG + chr5_4:12332677-12332696 Msa0838100:intron 30.0%
TTTGAAAAATAAGGGTGGTT+TGG + chr5_4:12332682-12332701 Msa0838100:intron 30.0%
! TCTCTTCAGATAAGTGTTTT+TGG + chr5_4:12332901-12332920 Msa0838100:intron 30.0%
TTGGAGAAGTTTATCCAAAA+TGG + chr5_4:12332920-12332939 Msa0838100:intron 30.0%
ATCCAAAATGGCTCTTAAAT+TGG + chr5_4:12332932-12332951 Msa0838100:intron 30.0%
TTTGTTTATATTGCCATCCT+AGG - chr5_4:12333052-12333071 None:intergenic 30.0%
GAAATTTGACTGTGATGAAA+TGG + chr5_4:12333072-12333091 Msa0838100:intron 30.0%
! ATTCATTGATGGTTAAATCC+GGG + chr5_4:12333103-12333122 Msa0838100:intron 30.0%
GCATAAAATGAATATCTTCC+CGG - chr5_4:12333124-12333143 None:intergenic 30.0%
! TCTTTCATGCTTTTGTGTAT+AGG + chr5_4:12333203-12333222 Msa0838100:intron 30.0%
!!! ACTAGAGAGTTCTTATTTTC+CGG - chr5_4:12333378-12333397 None:intergenic 30.0%
! TGGAATCATAATAGAAGTGT+AGG + chr5_4:12333486-12333505 Msa0838100:intron 30.0%
! GGAATCATAATAGAAGTGTA+GGG + chr5_4:12333487-12333506 Msa0838100:intron 30.0%
! GAATCATAATAGAAGTGTAG+GGG + chr5_4:12333488-12333507 Msa0838100:intron 30.0%
! ATTCACTTGTTTGTTACCTT+CGG + chr5_4:12333518-12333537 Msa0838100:intron 30.0%
ATATAGAGATTACTTACCGA+AGG - chr5_4:12333537-12333556 None:intergenic 30.0%
GGCTAATACTCATTATTTGT+AGG + chr5_4:12333570-12333589 Msa0838100:intron 30.0%
TGATAACAATGATGAATTCC+CGG - chr5_4:12333985-12334004 None:intergenic 30.0%
! TAATAGATTAAGGGCATGTT+TGG - chr5_4:12334258-12334277 None:intergenic 30.0%
AAGCAAATGCATAGAATATC+AGG - chr5_4:12334318-12334337 None:intergenic 30.0%
CAATGTGGATATAAATCTTC+AGG + chr5_4:12334432-12334451 Msa0838100:CDS 30.0%
GAGGTAGAAATGCTAATTAT+TGG - chr5_4:12334478-12334497 None:intergenic 30.0%
! TGAATTTTGTTCTCAAACAG+TGG - chr5_4:12334516-12334535 None:intergenic 30.0%
!! AAATTCATTTGCTGTGTCTT+AGG + chr5_4:12334529-12334548 Msa0838100:intron 30.0%
AAAAACTCGCGGATAAAAAA+GGG - chr5_4:12334808-12334827 None:intergenic 30.0%
AAAAAACTCGCGGATAAAAA+AGG - chr5_4:12334809-12334828 None:intergenic 30.0%
! TGAATGTAGGTGCTTTTAAT+GGG + chr5_4:12334995-12335014 Msa0838100:intron 30.0%
TTTCATCTAAATCACCTAAC+TGG - chr5_4:12335222-12335241 None:intergenic 30.0%
AGTTAGGTGATTTAGATGAA+AGG + chr5_4:12335221-12335240 Msa0838100:intron 30.0%
! CGATAGGTTTTTAATGACTT+AGG - chr5_4:12335300-12335319 None:intergenic 30.0%
!! AGGCTTGATTGAATTTGTTT+TGG + chr5_4:12335523-12335542 Msa0838100:intron 30.0%
!! CATATGGAAACTTTAGCTTT+AGG + chr5_4:12335994-12336013 Msa0838100:three_prime_UTR 30.0%
TCAAAACCCGTAACTAGTTA+TGG + chr5_4:12331364-12331383 Msa0838100:five_prime_UTR 35.0%
! TTGTGGATTATGAACAAGTG+TGG - chr5_4:12331438-12331457 None:intergenic 35.0%
TGGAAGAAGAAGAAGAAGAA+GGG - chr5_4:12331487-12331506 None:intergenic 35.0%
TGAAAAGATTGAAACTTGCG+AGG - chr5_4:12331512-12331531 None:intergenic 35.0%
! AGAGAATTTTGTGGAAGTTG+CGG - chr5_4:12331547-12331566 None:intergenic 35.0%
! GTGATGAAGAGAGAATTTTG+TGG - chr5_4:12331556-12331575 None:intergenic 35.0%
AACTACGAAGAACACATCAT+CGG + chr5_4:12331590-12331609 Msa0838100:CDS 35.0%
TTGTCGGAAGTTGGAAAAAT+GGG - chr5_4:12331653-12331672 None:intergenic 35.0%
TTCAAATCGATATCCCTCAA+AGG - chr5_4:12331872-12331891 None:intergenic 35.0%
AAAACCTTACCAAGAACCAA+AGG - chr5_4:12331938-12331957 None:intergenic 35.0%
ATGATGAAGAAGAAGAAGGT+GGG + chr5_4:12331972-12331991 Msa0838100:CDS 35.0%
!!! AGTTTTAGATTGAACGTGTC+AGG + chr5_4:12332196-12332215 Msa0838100:intron 35.0%
GCTTCATAGATTATTGTGTC+AGG + chr5_4:12332321-12332340 Msa0838100:intron 35.0%
GTCAGGTGTATGAAATGTAT+TGG + chr5_4:12332338-12332357 Msa0838100:intron 35.0%
! GTATGAAATGTATTGGTGTC+AGG + chr5_4:12332345-12332364 Msa0838100:intron 35.0%
TCAGGGTGTATGAAATGTAT+TGG + chr5_4:12332363-12332382 Msa0838100:intron 35.0%
CACATACATGTAGTTACCTT+TGG + chr5_4:12332393-12332412 Msa0838100:intron 35.0%
CAAGCACATGTAGTTATGTT+TGG + chr5_4:12332512-12332531 Msa0838100:intron 35.0%
GTAGTGAAAATCAACTTCCT+TGG + chr5_4:12332642-12332661 Msa0838100:intron 35.0%
! TTTGATTTATGGGAGCTTGT+TGG + chr5_4:12332712-12332731 Msa0838100:intron 35.0%
! CACCAATTTAAGAGCCATTT+TGG - chr5_4:12332937-12332956 None:intergenic 35.0%
GTTGTATATTGCCATCCATT+AGG - chr5_4:12332980-12332999 None:intergenic 35.0%
TTCAGTAAGTATTCCATGTC+TGG + chr5_4:12333298-12333317 Msa0838100:intron 35.0%
! TAATAGAAGTGTAGGGGAAA+AGG + chr5_4:12333494-12333513 Msa0838100:intron 35.0%
ACACGGAAGATTATAATGTG+TGG + chr5_4:12333711-12333730 Msa0838100:intron 35.0%
TTTGATCGCTCTTTACAAAG+CGG + chr5_4:12333782-12333801 Msa0838100:CDS 35.0%
CTCACATTATCTTGCACAAA+CGG - chr5_4:12333861-12333880 None:intergenic 35.0%
! CTGTTTTCATAAGCTATCCT+GGG + chr5_4:12334116-12334135 Msa0838100:intron 35.0%
TTATATCCCTAGTTACCTGT+TGG + chr5_4:12334289-12334308 Msa0838100:intron 35.0%
TAGAATATCAGGATACCAAC+AGG - chr5_4:12334307-12334326 None:intergenic 35.0%
!! TTGCTTTGTTGTTTATGTGC+TGG + chr5_4:12334332-12334351 Msa0838100:intron 35.0%
TTGTACAGCATAGTGAATCA+AGG - chr5_4:12334374-12334393 None:intergenic 35.0%
! AGTACTCTTGTTGTACAATG+TGG + chr5_4:12334417-12334436 Msa0838100:CDS 35.0%
! TTCTACCTCTTACTCTTTTG+TGG + chr5_4:12334489-12334508 Msa0838100:intron 35.0%
ACCTTGTGTGTTAGATAATG+TGG + chr5_4:12334695-12334714 Msa0838100:intron 35.0%
CCTTGTGTGTTAGATAATGT+GGG + chr5_4:12334696-12334715 Msa0838100:intron 35.0%
!! AGATGCTTTTAACTGGTCAT+TGG + chr5_4:12334727-12334746 Msa0838100:intron 35.0%
!! GATGCTTTTAACTGGTCATT+GGG + chr5_4:12334728-12334747 Msa0838100:intron 35.0%
ACAAACATTCATCATGACAC+TGG + chr5_4:12334932-12334951 Msa0838100:intron 35.0%
! CTGAATGTAGGTGCTTTTAA+TGG + chr5_4:12334994-12335013 Msa0838100:intron 35.0%
GGTAAAATATCAGTTGTCAC+TGG + chr5_4:12335023-12335042 Msa0838100:intron 35.0%
TTAAATGTAACCTCGTGTGT+TGG + chr5_4:12335126-12335145 Msa0838100:intron 35.0%
! AATCACCTAACTGGTTCTTA+AGG - chr5_4:12335213-12335232 None:intergenic 35.0%
! GTTTTTCTTCAACAACCGAT+AGG - chr5_4:12335316-12335335 None:intergenic 35.0%
ATTGACTAATCAACGTGTCA+CGG - chr5_4:12335473-12335492 None:intergenic 35.0%
AGCAGTAAGCAGATTAATAC+TGG + chr5_4:12335713-12335732 Msa0838100:intron 35.0%
!! ATCTTTTGTTTGTCTCAGGA+TGG + chr5_4:12335770-12335789 Msa0838100:intron 35.0%
!! TGACATTTTGACCAGAGTAA+AGG - chr5_4:12335817-12335836 None:intergenic 35.0%
! ATGATTTGGACTGACAAGTA+AGG + chr5_4:12335919-12335938 Msa0838100:three_prime_UTR 35.0%
! TGATTTGGACTGACAAGTAA+GGG + chr5_4:12335920-12335939 Msa0838100:three_prime_UTR 35.0%
!! GAAACTTTAGCTTTAGGACA+AGG + chr5_4:12336000-12336019 Msa0838100:three_prime_UTR 35.0%
GAAGAAGAAGAAGAAGGGAA+TGG - chr5_4:12331482-12331501 None:intergenic 40.0%
GTGGAAGAAGAAGAAGAAGA+AGG - chr5_4:12331488-12331507 None:intergenic 40.0%
CTTCGTAGTTGTTGTCATGT+TGG - chr5_4:12331580-12331599 None:intergenic 40.0%
TGTCGGAAGTTGGAAAAATG+GGG - chr5_4:12331652-12331671 None:intergenic 40.0%
GTTGTCGGAAGTTGGAAAAA+TGG - chr5_4:12331654-12331673 None:intergenic 40.0%
GTTGTTTACGAGGTTGTTGT+CGG - chr5_4:12331669-12331688 None:intergenic 40.0%
! AAAGAGGGTTGATTCCTTTG+AGG + chr5_4:12331855-12331874 Msa0838100:CDS 40.0%
! AAGAGGGTTGATTCCTTTGA+GGG + chr5_4:12331856-12331875 Msa0838100:CDS 40.0%
GAGGATGATGAAGAAGAAGA+AGG + chr5_4:12331968-12331987 Msa0838100:CDS 40.0%
GATGATGAAGAAGAAGAAGG+TGG + chr5_4:12331971-12331990 Msa0838100:CDS 40.0%
!! AATCCTAGATGGGCTGTTTA+TGG + chr5_4:12332022-12332041 Msa0838100:CDS 40.0%
!! ATCCTAGATGGGCTGTTTAT+GGG + chr5_4:12332023-12332042 Msa0838100:CDS 40.0%
CAATGACACGTAGATACCAA+AGG - chr5_4:12332412-12332431 None:intergenic 40.0%
CTATGTGTCAGTGTCATATC+CGG + chr5_4:12332538-12332557 Msa0838100:intron 40.0%
AGCAACACAGACACATATAC+CGG - chr5_4:12332560-12332579 None:intergenic 40.0%
!! ACTTCCTTGGTGATGATGTA+TGG + chr5_4:12332655-12332674 Msa0838100:intron 40.0%
ATGTCCATACATCATCACCA+AGG - chr5_4:12332662-12332681 None:intergenic 40.0%
TCACAACCTTTGGTACCTAA+TGG + chr5_4:12332962-12332981 Msa0838100:intron 40.0%
AACCTTTGGTACCTAATGGA+TGG + chr5_4:12332966-12332985 Msa0838100:intron 40.0%
GCTACATAAACAACCTAGGA+TGG + chr5_4:12333036-12333055 Msa0838100:intron 40.0%
TTGCAAACAATGAGAAGCAG+CGG - chr5_4:12333148-12333167 None:intergenic 40.0%
! TTTTGTGTATAGGTCGTCCT+AGG + chr5_4:12333213-12333232 Msa0838100:intron 40.0%
TTGTTCCATCGTTGATGTTG+CGG + chr5_4:12333428-12333447 Msa0838100:intron 40.0%
GCTCTTTACAAAGCGGTAAT+TGG + chr5_4:12333789-12333808 Msa0838100:CDS 40.0%
! TCTCAAGAGACTGTTGGTTA+TGG - chr5_4:12333826-12333845 None:intergenic 40.0%
CAACAGTCTCTTGAGAAACT+CGG + chr5_4:12333830-12333849 Msa0838100:CDS 40.0%
!! GCTGTTTTCATAAGCTATCC+TGG + chr5_4:12334115-12334134 Msa0838100:intron 40.0%
AGACTGTTCAGAAGAGCTTA+TGG - chr5_4:12334194-12334213 None:intergenic 40.0%
AGGATACCAACAGGTAACTA+GGG - chr5_4:12334298-12334317 None:intergenic 40.0%
GTTGTTTATGTGCTGGAAAC+AGG + chr5_4:12334339-12334358 Msa0838100:intron 40.0%
TTTATGTGCTGGAAACAGGA+TGG + chr5_4:12334343-12334362 Msa0838100:intron 40.0%
TTATGTGCTGGAAACAGGAT+GGG + chr5_4:12334344-12334363 Msa0838100:intron 40.0%
TACAGCATAGTGAATCAAGG+TGG - chr5_4:12334371-12334390 None:intergenic 40.0%
!! TCATTTGCTGTGTCTTAGGA+TGG + chr5_4:12334533-12334552 Msa0838100:intron 40.0%
GTCTGAACAGCAAGATGTAA+TGG - chr5_4:12334566-12334585 None:intergenic 40.0%
! GTGAAGCTTCTGCTGATTAA+AGG + chr5_4:12334602-12334621 Msa0838100:CDS 40.0%
CCCACATTATCTAACACACA+AGG - chr5_4:12334699-12334718 None:intergenic 40.0%
!!! ACTGGTCATTGGGTTTTTTG+TGG + chr5_4:12334738-12334757 Msa0838100:intron 40.0%
!!! CTGGTCATTGGGTTTTTTGT+GGG + chr5_4:12334739-12334758 Msa0838100:intron 40.0%
!!! TTGGGTTTTTTGTGGGTTTG+TGG + chr5_4:12334746-12334765 Msa0838100:intron 40.0%
TGTGGTGTTCCGTATAATTG+CGG + chr5_4:12334764-12334783 Msa0838100:intron 40.0%
AATGGGATGCCGCAATTATA+CGG - chr5_4:12334776-12334795 None:intergenic 40.0%
ATTTACCTACGAAGCAACTC+AGG + chr5_4:12335047-12335066 Msa0838100:intron 40.0%
CTCTTCCTTAAGAACCAGTT+AGG + chr5_4:12335205-12335224 Msa0838100:intron 40.0%
GAAAGACTTCCCTGGTTAAT+GGG - chr5_4:12335278-12335297 None:intergenic 40.0%
TCACTAAAGAAGCAAGTGCT+TGG - chr5_4:12335372-12335391 None:intergenic 40.0%
TACATATCTAGTCCCATGCT+TGG + chr5_4:12335397-12335416 Msa0838100:intron 40.0%
TTTGACCAGAGTAAAGGCAA+AGG - chr5_4:12335811-12335830 None:intergenic 40.0%
! AGCCATTGCTGAGTTTTTCA+TGG + chr5_4:12335949-12335968 Msa0838100:three_prime_UTR 40.0%
TGCCATGAAAAACTCAGCAA+TGG - chr5_4:12335954-12335973 None:intergenic 40.0%
! ATTGCTGAGTTTTTCATGGC+AGG + chr5_4:12335953-12335972 Msa0838100:three_prime_UTR 40.0%
! TGGAGAGAAGAAGAGTGTGT+GGG - chr5_4:12331462-12331481 None:intergenic 45.0%
! ATGGAGAGAAGAAGAGTGTG+TGG - chr5_4:12331463-12331482 None:intergenic 45.0%
AGATTGAAACTTGCGAGGTG+TGG - chr5_4:12331507-12331526 None:intergenic 45.0%
! ATTGGCTCAGTTGAAGCCTT+TGG + chr5_4:12331919-12331938 Msa0838100:CDS 45.0%
!! CAGTTGAAGCCTTTGGTTCT+TGG + chr5_4:12331926-12331945 Msa0838100:CDS 45.0%
!! GAAGCCTTTGGTTCTTGGTA+AGG + chr5_4:12331931-12331950 Msa0838100:CDS 45.0%
TAGTGCCTAGGAATCCTAGA+TGG + chr5_4:12332011-12332030 Msa0838100:CDS 45.0%
AGTGCCTAGGAATCCTAGAT+GGG + chr5_4:12332012-12332031 Msa0838100:CDS 45.0%
TGTTTATGGGAGAGGTTTCG+AGG + chr5_4:12332036-12332055 Msa0838100:CDS 45.0%
GACTCTGCTGCTATGAAAAC+TGG + chr5_4:12332091-12332110 Msa0838100:CDS 45.0%
TCTGCTGCTATGAAAACTGG+AGG + chr5_4:12332094-12332113 Msa0838100:CDS 45.0%
CTACGTGTCAGTGTCGTATA+TGG + chr5_4:12332273-12332292 Msa0838100:intron 45.0%
! CTACGTGTCATTGTCACATC+TGG + chr5_4:12332419-12332438 Msa0838100:intron 45.0%
!! TATTGTTTAGGGTGCCGTTC+TGG + chr5_4:12332463-12332482 Msa0838100:intron 45.0%
!! TGGTGCTACTTCACAACCTT+TGG + chr5_4:12332952-12332971 Msa0838100:intron 45.0%
TGCCATCCATTAGGTACCAA+AGG - chr5_4:12332971-12332990 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr5_4:12333009-12333028 Msa0838100:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr5_4:12333010-12333029 Msa0838100:intron 45.0%
GTCGGCTACATAAACAACCT+AGG + chr5_4:12333032-12333051 Msa0838100:intron 45.0%
TCGTCCTAGGTTGTTTACCA+GGG + chr5_4:12333226-12333245 Msa0838100:CDS 45.0%
GAAGTAGCAACTGACAAGTC+TGG - chr5_4:12333281-12333300 None:intergenic 45.0%
CAGTGATTGTTCACCAGACA+TGG - chr5_4:12333314-12333333 None:intergenic 45.0%
TTACTCCGCAACATCAACGA+TGG - chr5_4:12333436-12333455 None:intergenic 45.0%
! CTTGCAGCAAAAGTGTGCAA+AGG - chr5_4:12333607-12333626 None:intergenic 45.0%
! TTGCACACTTTTGCTGCAAG+CGG + chr5_4:12333607-12333626 Msa0838100:CDS 45.0%
CGAGTTTCTCAAGAGACTGT+TGG - chr5_4:12333832-12333851 None:intergenic 45.0%
CAATGATGAATTCCCGGTGA+GGG - chr5_4:12333979-12333998 None:intergenic 45.0%
ACAATGATGAATTCCCGGTG+AGG - chr5_4:12333980-12333999 None:intergenic 45.0%
TAAGCTATCCTGGGAGCTTA+TGG + chr5_4:12334125-12334144 Msa0838100:intron 45.0%
GCATATTTCCATAAGCTCCC+AGG - chr5_4:12334136-12334155 None:intergenic 45.0%
CAGGATACCAACAGGTAACT+AGG - chr5_4:12334299-12334318 None:intergenic 45.0%
TATGTGCTGGAAACAGGATG+GGG + chr5_4:12334345-12334364 Msa0838100:intron 45.0%
GTGGTCCACAAAAGAGTAAG+AGG - chr5_4:12334497-12334516 None:intergenic 45.0%
CAAGACGCACAAAAAACTCG+CGG - chr5_4:12334819-12334838 None:intergenic 45.0%
!! AATAGAAGCGGGCTGAATGT+AGG + chr5_4:12334982-12335001 Msa0838100:intron 45.0%
!! AGGTGCTTTTAATGGGTCGT+TGG + chr5_4:12335002-12335021 Msa0838100:intron 45.0%
CAACATAACACCAACACACG+AGG - chr5_4:12335139-12335158 None:intergenic 45.0%
!! CTCGTGTGTTGGTGTTATGT+TGG + chr5_4:12335137-12335156 Msa0838100:intron 45.0%
AAGAGATTCGCCCATTAACC+AGG + chr5_4:12335265-12335284 Msa0838100:intron 45.0%
AGAGATTCGCCCATTAACCA+GGG + chr5_4:12335266-12335285 Msa0838100:intron 45.0%
GGAAAGACTTCCCTGGTTAA+TGG - chr5_4:12335279-12335298 None:intergenic 45.0%
TGACTTAGGAAAGACTTCCC+TGG - chr5_4:12335286-12335305 None:intergenic 45.0%
TTCTTCTTATCCCCGTCTGT+CGG - chr5_4:12335886-12335905 None:intergenic 45.0%
!!! ACATTTTTATTTTAAAAAAA+TGG - chr5_4:12336107-12336126 None:intergenic 5.0%
! AAGAAGAGTGTGTGGGGTTG+TGG - chr5_4:12331455-12331474 None:intergenic 50.0%
! GGAGAGAAGAAGAGTGTGTG+GGG - chr5_4:12331461-12331480 None:intergenic 50.0%
GACTGTCTTGTCTTCGAGGA+AGG + chr5_4:12331614-12331633 Msa0838100:CDS 50.0%
ACGAGGTTGTTGTCGGAAGT+TGG - chr5_4:12331662-12331681 None:intergenic 50.0%
!! AAGGTGGGTTGAGTGATGAG+AGG + chr5_4:12331987-12332006 Msa0838100:CDS 50.0%
!! AGGTGGGTTGAGTGATGAGA+GGG + chr5_4:12331988-12332007 Msa0838100:CDS 50.0%
! ACAGCCCATCTAGGATTCCT+AGG - chr5_4:12332019-12332038 None:intergenic 50.0%
CTCCCATAAACAGCCCATCT+AGG - chr5_4:12332028-12332047 None:intergenic 50.0%
!! AGATGGGCTGTTTATGGGAG+AGG + chr5_4:12332028-12332047 Msa0838100:CDS 50.0%
ATACGTGTCAGCCACCAGAA+CGG - chr5_4:12332480-12332499 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr5_4:12333011-12333030 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr5_4:12333008-12333027 Msa0838100:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr5_4:12333014-12333033 Msa0838100:intron 50.0%
GTCGTCCTAGGTTGTTTACC+AGG + chr5_4:12333225-12333244 Msa0838100:CDS 50.0%
TCCTAGGTTGTTTACCAGGG+AGG + chr5_4:12333229-12333248 Msa0838100:CDS 50.0%
TCCTCCCTGGTAAACAACCT+AGG - chr5_4:12333233-12333252 None:intergenic 50.0%
GTTGTTTACCAGGGAGGAGA+GGG + chr5_4:12333235-12333254 Msa0838100:CDS 50.0%
TTGCTGTGTCTTAGGATGGC+TGG + chr5_4:12334537-12334556 Msa0838100:intron 50.0%
GAATGCCTGAGTTGCTTCGT+AGG - chr5_4:12335055-12335074 None:intergenic 50.0%
GCCTTGCAGGAGAAGTGATA+AGG + chr5_4:12335503-12335522 Msa0838100:intron 50.0%
GCCTTATCACTTCTCCTGCA+AGG - chr5_4:12335507-12335526 None:intergenic 50.0%
GAGTAAAGGCAAAGGTCGAG+TGG - chr5_4:12335803-12335822 None:intergenic 50.0%
CTCGACCTTTGCCTTTACTC+TGG + chr5_4:12335803-12335822 Msa0838100:CDS 50.0%
TTATAGACGCTCCCGACAGA+CGG + chr5_4:12335871-12335890 Msa0838100:CDS 50.0%
TCTTCTTATCCCCGTCTGTC+GGG - chr5_4:12335885-12335904 None:intergenic 50.0%
GCAAGCAGCTCTTCAGCATA+TGG + chr5_4:12335978-12335997 Msa0838100:three_prime_UTR 50.0%
CGGAGACTGTCTTGTCTTCG+AGG + chr5_4:12331610-12331629 Msa0838100:CDS 55.0%
GTGATGAGAGGGTAGTGCCT+AGG + chr5_4:12331999-12332018 Msa0838100:CDS 55.0%
CAGGTGCGCTTGACACGTAA+TGG + chr5_4:12332215-12332234 Msa0838100:intron 55.0%
!! TGTTTAGGGTGCCGTTCTGG+TGG + chr5_4:12332466-12332485 Msa0838100:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr5_4:12333016-12333035 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr5_4:12333022-12333041 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr5_4:12333023-12333042 None:intergenic 55.0%
GGTTGTTTACCAGGGAGGAG+AGG + chr5_4:12333234-12333253 Msa0838100:CDS 55.0%
CAACAAATCCCTCTCCTCCC+TGG - chr5_4:12333246-12333265 None:intergenic 55.0%
AATCTCAGTCCTCGCCTTGC+AGG + chr5_4:12335490-12335509 Msa0838100:intron 55.0%
ATCACTTCTCCTGCAAGGCG+AGG - chr5_4:12335502-12335521 None:intergenic 55.0%
!! GTCTGTCGGGAGCGTCTATA+AGG - chr5_4:12335872-12335891 None:intergenic 55.0%
TATAGACGCTCCCGACAGAC+GGG + chr5_4:12335872-12335891 Msa0838100:CDS 55.0%
GATGAATTCCCGGTGAGGGC+AGG - chr5_4:12333975-12333994 None:intergenic 60.0%
ATAGACGCTCCCGACAGACG+GGG + chr5_4:12335873-12335892 Msa0838100:CDS 60.0%
CGTGCTCTTCCTGCCCTCAC+CGG + chr5_4:12333963-12333982 Msa0838100:intron 65.0%
GTGCTCTTCCTGCCCTCACC+GGG + chr5_4:12333964-12333983 Msa0838100:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 12331321 12336166 12331321 ID=Msa0838100;Name=Msa0838100
chr5_4 mRNA 12331321 12336166 12331321 ID=Msa0838100-mRNA-1;Parent=Msa0838100;Name=Msa0838100-mRNA-1;_AED=0.09;_eAED=0.09;_QI=71|1|1|1|1|1|7|256|439
chr5_4 exon 12331321 12332115 12331321 ID=Msa0838100-mRNA-1:exon:5429;Parent=Msa0838100-mRNA-1
chr5_4 exon 12333225 12333301 12333225 ID=Msa0838100-mRNA-1:exon:5430;Parent=Msa0838100-mRNA-1
chr5_4 exon 12333592 12333690 12333592 ID=Msa0838100-mRNA-1:exon:5431;Parent=Msa0838100-mRNA-1
chr5_4 exon 12333777 12333875 12333777 ID=Msa0838100-mRNA-1:exon:5432;Parent=Msa0838100-mRNA-1
chr5_4 exon 12334361 12334459 12334361 ID=Msa0838100-mRNA-1:exon:5433;Parent=Msa0838100-mRNA-1
chr5_4 exon 12334551 12334649 12334551 ID=Msa0838100-mRNA-1:exon:5434;Parent=Msa0838100-mRNA-1
chr5_4 exon 12335788 12336166 12335788 ID=Msa0838100-mRNA-1:exon:5435;Parent=Msa0838100-mRNA-1
chr5_4 five_prime_UTR 12331321 12331391 12331321 ID=Msa0838100-mRNA-1:five_prime_utr;Parent=Msa0838100-mRNA-1
chr5_4 CDS 12331392 12332115 12331392 ID=Msa0838100-mRNA-1:cds;Parent=Msa0838100-mRNA-1
chr5_4 CDS 12333225 12333301 12333225 ID=Msa0838100-mRNA-1:cds;Parent=Msa0838100-mRNA-1
chr5_4 CDS 12333592 12333690 12333592 ID=Msa0838100-mRNA-1:cds;Parent=Msa0838100-mRNA-1
chr5_4 CDS 12333777 12333875 12333777 ID=Msa0838100-mRNA-1:cds;Parent=Msa0838100-mRNA-1
chr5_4 CDS 12334361 12334459 12334361 ID=Msa0838100-mRNA-1:cds;Parent=Msa0838100-mRNA-1
chr5_4 CDS 12334551 12334649 12334551 ID=Msa0838100-mRNA-1:cds;Parent=Msa0838100-mRNA-1
chr5_4 CDS 12335788 12335910 12335788 ID=Msa0838100-mRNA-1:cds;Parent=Msa0838100-mRNA-1
chr5_4 three_prime_UTR 12335911 12336166 12335911 ID=Msa0838100-mRNA-1:three_prime_utr;Parent=Msa0838100-mRNA-1
Gene Sequence

>Msa0838100

ATGTTGTCAATTGCAACAAGAACAACAAAAATGTTCAATTTTTCCACACTTGTTCATAATCCACAACCCCACACACTCTTCTTCTCTCCATTCCCTTCTTCTTCTTCTTCTTCCACACCTCGCAAGTTTCAATCTTTTCAATCTCTCACAAACCGCAACTTCCACAAAATTCTCTCTTCATCACACCAACATGACAACAACTACGAAGAACACATCATCGGAGACTGTCTTGTCTTCGAGGAAGGCATTTTCGAAGACCCCATTTTTCCAACTTCCGACAACAACCTCGTAAACAACAAAAAACCAAAACCAATTTCAAAGAAGAAAAAGAAGACAGTGGTAAAGTCCGAGAATCTTGTTCCTGATAAATGGAAAGAAGTTCAAGCAGAGATAAACATAACGAAGAAAGAACGGCGTAAGATAGCTCAAGAGATTGAGTTTAATAGTAAAGTTATGAAGAAGAAAAGAGGGTTGATTCCTTTGAGGGATATCGATTTGAATGAGTATAAGGCTTATAAAGAAGCTAAATTGGCTCAGTTGAAGCCTTTGGTTCTTGGTAAGGTTTTTGTTGAGAAAGAGGATGATGAAGAAGAAGAAGGTGGGTTGAGTGATGAGAGGGTAGTGCCTAGGAATCCTAGATGGGCTGTTTATGGGAGAGGTTTCGAGGATGTTAATGAGTTTTTGAATAGTGAGAGTTATGACTCTGCTGCTATGAAAACTGGAGGTCGTCCTAGGTTGTTTACCAGGGAGGAGAGGGATTTGTTGAGTAAGAAAAAGCCAGACTTGTCAGTTGCTACTTCAGATAAATGGCTTCCTTTGCACACTTTTGCTGCAAGCGGAGAATCTTTACTTTTAGAATCTTTGTTGCGGCATGATGTTGATATTAATGTTATGGATAAGGATGGTTTGATCGCTCTTTACAAAGCGGTAATTGGAAGAAAGCATGCCATAACCAACAGTCTCTTGAGAAACTCGGCGAATCCGTTTGTGCAAGATAATGATGGGGCCACCTTGATTCACTATGCTGTACAAACAGCGTCTGTCCGAACAATTAAAGTACTCTTGTTGTACAATGTGGATATAAATCTTCAGGACAATGATGGCTGGACACCATTACATCTTGCTGTTCAGACTCAGAGAACTGATATAGTGAAGCTTCTGCTGATTAAAGGTGCTGATCAGAAATTAAAAAACAAGGATGGTTTAACTCCACTCGACCTTTGCCTTTACTCTGGTCAAAATGTCAGAACATATGAGTTAATCAAGTTGTTGAAACAGCCTTATAGACGCTCCCGACAGACGGGGATAAGAAGAAAATAA

Protein sequence

>Msa0838100

MLSIATRTTKMFNFSTLVHNPQPHTLFFSPFPSSSSSSTPRKFQSFQSLTNRNFHKILSSSHQHDNNYEEHIIGDCLVFEEGIFEDPIFPTSDNNLVNNKKPKPISKKKKKTVVKSENLVPDKWKEVQAEINITKKERRKIAQEIEFNSKVMKKKRGLIPLRDIDLNEYKAYKEAKLAQLKPLVLGKVFVEKEDDEEEEGGLSDERVVPRNPRWAVYGRGFEDVNEFLNSESYDSAAMKTGGRPRLFTREERDLLSKKKPDLSVATSDKWLPLHTFAASGESLLLESLLRHDVDINVMDKDGLIALYKAVIGRKHAITNSLLRNSANPFVQDNDGATLIHYAVQTASVRTIKVLLLYNVDINLQDNDGWTPLHLAVQTQRTDIVKLLLIKGADQKLKNKDGLTPLDLCLYSGQNVRTYELIKLLKQPYRRSRQTGIRRK*