Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071500 | XP_003592350.1 | 86.239 | 109 | 15 | 0 | 1 | 109 | 203 | 311 | 1.41e-57 | 191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071500 | sp|Q9FLH8|SCRK7_ARATH | 73.394 | 109 | 29 | 0 | 1 | 109 | 203 | 311 | 1.00e-51 | 168 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071500 | G7IC32 | 86.239 | 109 | 15 | 0 | 1 | 109 | 203 | 311 | 6.75e-58 | 191 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016570 | Msa0071500 | 0.807259 | 5.515884e-50 | -8.615850e-47 |
| Msa0016580 | Msa0071500 | 0.801441 | 8.989267e-49 | -8.615850e-47 |
| Msa0071500 | Msa0102070 | 0.819436 | 1.162516e-52 | -8.615850e-47 |
| Msa0071500 | Msa0114060 | 0.806614 | 7.550152e-50 | -8.615850e-47 |
| Msa0071500 | Msa0131770 | 0.813194 | 2.896403e-51 | -8.615850e-47 |
| Msa0071500 | Msa0142220 | 0.812234 | 4.696978e-51 | -8.615850e-47 |
| Msa0071500 | Msa0227480 | 0.813655 | 2.292620e-51 | -8.615850e-47 |
| Msa0071500 | Msa0288100 | 0.809036 | 2.307789e-50 | -8.615850e-47 |
| Msa0071500 | Msa0290870 | 0.809219 | 2.108645e-50 | -8.615850e-47 |
| Msa0071500 | Msa0294030 | 0.808865 | 2.509765e-50 | -8.615850e-47 |
| Msa0071500 | Msa0340450 | 0.804287 | 2.322760e-49 | -8.615850e-47 |
| Msa0071500 | Msa0342240 | 0.801368 | 9.306834e-49 | -8.615850e-47 |
| Msa0071500 | Msa0395570 | 0.812807 | 3.519833e-51 | -8.615850e-47 |
| Msa0071500 | Msa0430420 | 0.800036 | 1.739765e-48 | -8.615850e-47 |
| Msa0071500 | Msa0452900 | 0.813132 | 2.987664e-51 | -8.615850e-47 |
| Msa0071500 | Msa0491590 | 0.812218 | 4.735588e-51 | -8.615850e-47 |
| Msa0071500 | Msa0541130 | 0.806891 | 6.598683e-50 | -8.615850e-47 |
| Msa0071500 | Msa0600700 | 0.802567 | 5.276792e-49 | -8.615850e-47 |
| Msa0071500 | Msa0604350 | 0.806938 | 6.449059e-50 | -8.615850e-47 |
| Msa0071500 | Msa0661650 | 0.806024 | 1.005536e-49 | -8.615850e-47 |
| Msa0071500 | Msa0673450 | 0.805097 | 1.573427e-49 | -8.615850e-47 |
| Msa0071500 | Msa0678930 | 0.816803 | 4.580802e-52 | -8.615850e-47 |
| Msa0071500 | Msa0694370 | 0.815300 | 9.921277e-52 | -8.615850e-47 |
| Msa0071500 | Msa0726140 | 0.808500 | 3.003844e-50 | -8.615850e-47 |
| Msa0071500 | Msa0729800 | 0.815055 | 1.124867e-51 | -8.615850e-47 |
| Msa0071500 | Msa0745060 | 0.813037 | 3.134228e-51 | -8.615850e-47 |
| Msa0071500 | Msa0760130 | 0.803493 | 3.395030e-49 | -8.615850e-47 |
| Msa0071500 | Msa0764960 | 0.801497 | 8.754847e-49 | -8.615850e-47 |
| Msa0071500 | Msa0766630 | 0.837672 | 4.526624e-57 | -8.615850e-47 |
| Msa0071500 | Msa0783160 | 0.808303 | 3.309298e-50 | -8.615850e-47 |
| Msa0071500 | Msa0811080 | 0.812477 | 4.157353e-51 | -8.615850e-47 |
| Msa0071500 | Msa0825860 | 0.810957 | 8.900153e-51 | -8.615850e-47 |
| Msa0071500 | Msa0844490 | 0.800087 | 1.698897e-48 | -8.615850e-47 |
| Msa0071500 | Msa0846330 | 0.801558 | 8.509675e-49 | -8.615850e-47 |
| Msa0071500 | Msa0846350 | 0.814187 | 1.750767e-51 | -8.615850e-47 |
| Msa0071500 | Msa0858980 | 0.809160 | 2.170937e-50 | -8.615850e-47 |
| Msa0071500 | Msa0865320 | 0.802138 | 6.468352e-49 | -8.615850e-47 |
| Msa0071500 | Msa0907260 | 0.818870 | 1.564316e-52 | -8.615850e-47 |
| Msa0071500 | Msa0956270 | 0.817664 | 2.933012e-52 | -8.615850e-47 |
| Msa0071500 | Msa0974070 | 0.805599 | 1.234770e-49 | -8.615850e-47 |
| Msa0071500 | Msa0974080 | 0.804712 | 1.893505e-49 | -8.615850e-47 |
| Msa0071500 | Msa0981370 | 0.816117 | 6.525489e-52 | -8.615850e-47 |
| Msa0071500 | Msa1014540 | 0.824031 | 1.006071e-53 | -8.615850e-47 |
| Msa0071500 | Msa1016280 | 0.817298 | 3.545341e-52 | -8.615850e-47 |
| Msa0071500 | Msa1023950 | 0.812789 | 3.553421e-51 | -8.615850e-47 |
| Msa0071500 | Msa1024240 | 0.805815 | 1.112742e-49 | -8.615850e-47 |
| Msa0071500 | Msa1025360 | 0.805105 | 1.567439e-49 | -8.615850e-47 |
| Msa0071500 | Msa1044840 | 0.804213 | 2.405921e-49 | -8.615850e-47 |
| Msa0071500 | Msa1100980 | 0.806527 | 7.879022e-50 | -8.615850e-47 |
| Msa0071500 | Msa1109440 | 0.827125 | 1.859404e-54 | -8.615850e-47 |
| Msa0071500 | Msa1114030 | 0.807674 | 4.505014e-50 | -8.615850e-47 |
| Msa0071500 | Msa1121490 | 0.803748 | 3.005874e-49 | -8.615850e-47 |
| Msa0071500 | Msa1146110 | 0.815296 | 9.942602e-52 | -8.615850e-47 |
| Msa0071500 | Msa1187940 | 0.812342 | 4.449432e-51 | -8.615850e-47 |
| Msa0071500 | Msa1195190 | 0.819758 | 9.814420e-53 | -8.615850e-47 |
| Msa0071500 | Msa1246510 | 0.806122 | 9.590671e-50 | -8.615850e-47 |
| Msa0071500 | Msa1251910 | 0.839765 | 1.302654e-57 | -8.615850e-47 |
| Msa0071500 | Msa1253000 | 0.822429 | 2.380482e-53 | -8.615850e-47 |
| Msa0071500 | Msa1269670 | 0.817386 | 3.388318e-52 | -8.615850e-47 |
| Msa0071500 | Msa1270230 | 0.814680 | 1.361941e-51 | -8.615850e-47 |
| Msa0071500 | Msa1277660 | 0.802440 | 5.605551e-49 | -8.615850e-47 |
| Msa0071500 | Msa1284680 | 0.808809 | 2.579942e-50 | -8.615850e-47 |
| Msa0071500 | Msa1285930 | 0.813873 | 2.053059e-51 | -8.615850e-47 |
| Msa0071500 | Msa1287810 | 0.804809 | 1.807847e-49 | -8.615850e-47 |
| Msa0071500 | Msa1382690 | 0.815829 | 7.565647e-52 | -8.615850e-47 |
| Msa0071500 | Msa1433120 | 0.819480 | 1.136193e-52 | -8.615850e-47 |
| Msa0071500 | Msa1466540 | 0.812797 | 3.538360e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071500 | MtrunA17_Chr1g0204101 | 86.239 | 109 | 15 | 0 | 1 | 109 | 203 | 311 | 1.30e-61 | 191 |
| Msa0071500 | MtrunA17_Chr1g0183241 | 84.404 | 109 | 17 | 0 | 1 | 109 | 269 | 377 | 7.91e-58 | 183 |
| Msa0071500 | MtrunA17_Chr6g0474331 | 78.899 | 109 | 23 | 0 | 1 | 109 | 208 | 316 | 6.98e-56 | 176 |
| Msa0071500 | MtrunA17_Chr1g0177321 | 80.734 | 109 | 21 | 0 | 1 | 109 | 336 | 444 | 1.63e-49 | 163 |
| Msa0071500 | MtrunA17_Chr1g0177771 | 80.734 | 109 | 21 | 0 | 1 | 109 | 419 | 527 | 2.04e-48 | 161 |
| Msa0071500 | MtrunA17_Chr1g0171921 | 80.734 | 109 | 21 | 0 | 1 | 109 | 362 | 470 | 3.11e-48 | 160 |
| Msa0071500 | MtrunA17_Chr5g0434971 | 64.220 | 109 | 38 | 1 | 1 | 109 | 247 | 354 | 2.88e-43 | 145 |
| Msa0071500 | MtrunA17_Chr1g0183661 | 74.257 | 101 | 19 | 1 | 9 | 109 | 171 | 264 | 5.79e-43 | 142 |
| Msa0071500 | MtrunA17_Chr7g0246421 | 59.633 | 109 | 44 | 0 | 1 | 109 | 58 | 166 | 1.72e-40 | 132 |
| Msa0071500 | MtrunA17_Chr1g0188291 | 55.556 | 108 | 46 | 2 | 2 | 109 | 189 | 294 | 1.36e-34 | 121 |
| Msa0071500 | MtrunA17_Chr4g0033631 | 57.798 | 109 | 44 | 2 | 1 | 109 | 195 | 301 | 7.57e-33 | 116 |
| Msa0071500 | MtrunA17_Chr2g0329451 | 55.046 | 109 | 47 | 2 | 1 | 109 | 194 | 300 | 1.42e-32 | 115 |
| Msa0071500 | MtrunA17_Chr4g0020911 | 79.487 | 78 | 16 | 0 | 1 | 78 | 112 | 189 | 2.32e-32 | 112 |
| Msa0071500 | MtrunA17_Chr1g0176221 | 54.128 | 109 | 20 | 1 | 1 | 109 | 103 | 181 | 1.51e-25 | 95.1 |
| Msa0071500 | MtrunA17_Chr1g0171911 | 66.667 | 42 | 14 | 0 | 11 | 52 | 22 | 63 | 8.00e-13 | 58.5 |
| Msa0071500 | MtrunA17_Chr5g0419371 | 27.132 | 129 | 75 | 2 | 1 | 110 | 402 | 530 | 1.00e-11 | 60.1 |
| Msa0071500 | MtrunA17_Chr4g0008441 | 38.554 | 83 | 46 | 2 | 33 | 110 | 345 | 427 | 2.15e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0071500 | AT5G51830.2 | 73.394 | 109 | 29 | 0 | 1 | 109 | 203 | 311 | 1.02e-52 | 168 |
| Msa0071500 | AT5G51830.1 | 73.394 | 109 | 29 | 0 | 1 | 109 | 203 | 311 | 1.02e-52 | 168 |
| Msa0071500 | AT1G66430.1 | 66.055 | 109 | 36 | 1 | 1 | 109 | 245 | 352 | 2.20e-44 | 148 |
| Msa0071500 | AT2G31390.1 | 57.798 | 109 | 44 | 2 | 1 | 109 | 189 | 295 | 5.65e-35 | 122 |
| Msa0071500 | AT4G10260.1 | 59.259 | 108 | 42 | 2 | 2 | 109 | 187 | 292 | 1.36e-34 | 121 |
| Msa0071500 | AT1G06030.1 | 55.046 | 109 | 47 | 2 | 1 | 109 | 191 | 297 | 1.25e-33 | 119 |
| Msa0071500 | AT3G59480.1 | 55.046 | 109 | 47 | 2 | 1 | 109 | 190 | 296 | 1.84e-33 | 118 |
| Msa0071500 | AT1G06020.1 | 53.211 | 109 | 49 | 1 | 1 | 109 | 190 | 296 | 1.77e-31 | 113 |
| Msa0071500 | AT1G50390.1 | 43.119 | 109 | 31 | 1 | 1 | 109 | 36 | 113 | 3.00e-21 | 82.8 |
| Msa0071500 | AT3G54090.1 | 29.371 | 143 | 59 | 4 | 4 | 110 | 300 | 436 | 6.27e-13 | 63.9 |
| Msa0071500 | AT1G69200.1 | 31.496 | 127 | 68 | 4 | 3 | 110 | 401 | 527 | 1.38e-12 | 62.8 |
Find 33 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAACCATAATGGAATATTT+TGG | 0.235298 | 1_2:+43449954 | None:intergenic |
| CAGGCCAAAATATTCCATTA+TGG | 0.292003 | 1_2:-43449958 | Msa0071500:five_prime_UTR |
| CAATAAGAAGCTTGAGATTA+GGG | 0.330590 | 1_2:+43449561 | None:intergenic |
| CGAATTACCTCGAAAATACT+TGG | 0.375128 | 1_2:+43449165 | None:intergenic |
| ACAATAAGAAGCTTGAGATT+AGG | 0.381243 | 1_2:+43449560 | None:intergenic |
| GAACTGGTATAATGAGCATA+TGG | 0.394625 | 1_2:-43449801 | Msa0071500:exon |
| TTTAATTTAATACTGATTGC+AGG | 0.398055 | 1_2:-43449977 | Msa0071500:five_prime_UTR |
| TCAAACTGATGGAACCATAA+TGG | 0.399197 | 1_2:+43449944 | None:intergenic |
| CATGGTGTCAATCTCAAATT+CGG | 0.412055 | 1_2:+43449844 | None:intergenic |
| TGGCAAAACAGAACGCTTCT+CGG | 0.447275 | 1_2:+43449048 | None:intergenic |
| GGATCTAGCAGATGTAATAA+AGG | 0.449697 | 1_2:-43449779 | Msa0071500:intron |
| CTGGTGATGCATTTGTTAGT+GGG | 0.458027 | 1_2:-43449212 | Msa0071500:CDS |
| GCTGGTGATGCATTTGTTAG+TGG | 0.461233 | 1_2:-43449213 | Msa0071500:CDS |
| CCAGCACCAGTTGTGTCAAC+AGG | 0.471899 | 1_2:+43449231 | None:intergenic |
| TCAGACGAGGCTGCTCGAAC+TGG | 0.475775 | 1_2:-43449817 | Msa0071500:five_prime_UTR |
| GTTCGAGCAGCCTCGTCTGA+TGG | 0.491161 | 1_2:+43449820 | None:intergenic |
| GTTGAACCTGTTGACACAAC+TGG | 0.496302 | 1_2:-43449237 | Msa0071500:CDS |
| AAGCTTCTTATTGTTACTGA+AGG | 0.496838 | 1_2:-43449551 | Msa0071500:CDS |
| CCTGTTGACACAACTGGTGC+TGG | 0.498429 | 1_2:-43449231 | Msa0071500:CDS |
| GCAAGATGAGCCGACTTGCA+TGG | 0.520566 | 1_2:+43449913 | None:intergenic |
| AACTGGTATAATGAGCATAT+GGG | 0.540901 | 1_2:-43449800 | Msa0071500:exon |
| TATTGTTACTGAAGGGTCGA+AGG | 0.544356 | 1_2:-43449543 | Msa0071500:CDS |
| GCAGCCTCGTCTGATGGCCA+TGG | 0.544803 | 1_2:+43449826 | None:intergenic |
| AGCTTCTTATTGTTACTGAA+GGG | 0.544876 | 1_2:-43449550 | Msa0071500:CDS |
| TGGCTCGTCAATCAAACTGA+TGG | 0.563370 | 1_2:+43449933 | None:intergenic |
| ATTGTTACTGAAGGGTCGAA+GGG | 0.587847 | 1_2:-43449542 | Msa0071500:CDS |
| CGAATTTGAGATTGACACCA+TGG | 0.607928 | 1_2:-43449843 | Msa0071500:five_prime_UTR |
| AGAGTCTTTAGCGATTCTCA+AGG | 0.627558 | 1_2:+43449888 | None:intergenic |
| GAATTACCTCGAAAATACTT+GGG | 0.629303 | 1_2:+43449166 | None:intergenic |
| GACACCATGGCCATCAGACG+AGG | 0.640375 | 1_2:-43449830 | Msa0071500:five_prime_UTR |
| GATTGACGAGCCATGCAAGT+CGG | 0.649771 | 1_2:-43449923 | Msa0071500:five_prime_UTR |
| AATACAACATCATCATCACA+AGG | 0.729371 | 1_2:+43449599 | None:intergenic |
| GGGTTGTAGATATTACACCA+AGG | 0.768244 | 1_2:-43449522 | Msa0071500:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTTAATACTGATTGC+AGG | - | chr1_2:43449065-43449084 | Msa0071500:CDS | 20.0% |
| !! | TTGTAAAGTGTATTGTATAA+AGG | + | chr1_2:43449314-43449333 | None:intergenic | 20.0% |
| !! | AGAAAATAATGAAATGACTT+TGG | + | chr1_2:43449554-43449573 | None:intergenic | 20.0% |
| !!! | TTTAATTTAATACTGATTGC+AGG | - | chr1_2:43449065-43449084 | Msa0071500:CDS | 20.0% |
| !! | TTGTAAAGTGTATTGTATAA+AGG | + | chr1_2:43449314-43449333 | None:intergenic | 20.0% |
| !! | AGAAAATAATGAAATGACTT+TGG | + | chr1_2:43449554-43449573 | None:intergenic | 20.0% |
| ! | TAAGAAAATAACACTTCAGA+TGG | + | chr1_2:43449371-43449390 | None:intergenic | 25.0% |
| !!! | GATGAGATTACTTTTTTGAT+TGG | - | chr1_2:43449410-43449429 | Msa0071500:intron | 25.0% |
| ! | AAAAAAAAGTTGTGAGTGTT+TGG | - | chr1_2:43449930-43449949 | Msa0071500:five_prime_UTR | 25.0% |
| !!! | TTTGATGAAGTTATTTTGTG+TGG | - | chr1_2:43449954-43449973 | Msa0071500:five_prime_UTR | 25.0% |
| ! | TAAGAAAATAACACTTCAGA+TGG | + | chr1_2:43449371-43449390 | None:intergenic | 25.0% |
| !!! | GATGAGATTACTTTTTTGAT+TGG | - | chr1_2:43449410-43449429 | Msa0071500:intron | 25.0% |
| ! | AAAAAAAAGTTGTGAGTGTT+TGG | - | chr1_2:43449930-43449949 | Msa0071500:five_prime_UTR | 25.0% |
| !!! | TTTGATGAAGTTATTTTGTG+TGG | - | chr1_2:43449954-43449973 | Msa0071500:five_prime_UTR | 25.0% |
| !! | GGAACCATAATGGAATATTT+TGG | + | chr1_2:43449091-43449110 | None:intergenic | 30.0% |
| AACTGGTATAATGAGCATAT+GGG | - | chr1_2:43449242-43449261 | Msa0071500:CDS | 30.0% | |
| !!! | GAGATTACTTTTTTGATTGG+TGG | - | chr1_2:43449413-43449432 | Msa0071500:intron | 30.0% |
| !!! | ATTACTTTTTTGATTGGTGG+TGG | - | chr1_2:43449416-43449435 | Msa0071500:intron | 30.0% |
| AATACAACATCATCATCACA+AGG | + | chr1_2:43449446-43449465 | None:intergenic | 30.0% | |
| CAATAAGAAGCTTGAGATTA+GGG | + | chr1_2:43449484-43449503 | None:intergenic | 30.0% | |
| ACAATAAGAAGCTTGAGATT+AGG | + | chr1_2:43449485-43449504 | None:intergenic | 30.0% | |
| AAGCTTCTTATTGTTACTGA+AGG | - | chr1_2:43449491-43449510 | Msa0071500:intron | 30.0% | |
| AGCTTCTTATTGTTACTGAA+GGG | - | chr1_2:43449492-43449511 | Msa0071500:intron | 30.0% | |
| TGATTACTAAATGTTTGTGC+AGG | - | chr1_2:43449753-43449772 | Msa0071500:intron | 30.0% | |
| GATTACTAAATGTTTGTGCA+GGG | - | chr1_2:43449754-43449773 | Msa0071500:intron | 30.0% | |
| GAATTACCTCGAAAATACTT+GGG | + | chr1_2:43449879-43449898 | None:intergenic | 30.0% | |
| !! | CAAGTATTTTCGAGGTAATT+CGG | - | chr1_2:43449878-43449897 | Msa0071500:five_prime_UTR | 30.0% |
| !! | GGAACCATAATGGAATATTT+TGG | + | chr1_2:43449091-43449110 | None:intergenic | 30.0% |
| AACTGGTATAATGAGCATAT+GGG | - | chr1_2:43449242-43449261 | Msa0071500:CDS | 30.0% | |
| !!! | GAGATTACTTTTTTGATTGG+TGG | - | chr1_2:43449413-43449432 | Msa0071500:intron | 30.0% |
| !!! | ATTACTTTTTTGATTGGTGG+TGG | - | chr1_2:43449416-43449435 | Msa0071500:intron | 30.0% |
| AATACAACATCATCATCACA+AGG | + | chr1_2:43449446-43449465 | None:intergenic | 30.0% | |
| CAATAAGAAGCTTGAGATTA+GGG | + | chr1_2:43449484-43449503 | None:intergenic | 30.0% | |
| ACAATAAGAAGCTTGAGATT+AGG | + | chr1_2:43449485-43449504 | None:intergenic | 30.0% | |
| AAGCTTCTTATTGTTACTGA+AGG | - | chr1_2:43449491-43449510 | Msa0071500:intron | 30.0% | |
| AGCTTCTTATTGTTACTGAA+GGG | - | chr1_2:43449492-43449511 | Msa0071500:intron | 30.0% | |
| TGATTACTAAATGTTTGTGC+AGG | - | chr1_2:43449753-43449772 | Msa0071500:intron | 30.0% | |
| GATTACTAAATGTTTGTGCA+GGG | - | chr1_2:43449754-43449773 | Msa0071500:intron | 30.0% | |
| GAATTACCTCGAAAATACTT+GGG | + | chr1_2:43449879-43449898 | None:intergenic | 30.0% | |
| !! | CAAGTATTTTCGAGGTAATT+CGG | - | chr1_2:43449878-43449897 | Msa0071500:five_prime_UTR | 30.0% |
| CAGGCCAAAATATTCCATTA+TGG | - | chr1_2:43449084-43449103 | Msa0071500:intron | 35.0% | |
| TCAAACTGATGGAACCATAA+TGG | + | chr1_2:43449101-43449120 | None:intergenic | 35.0% | |
| ! | CATGGTGTCAATCTCAAATT+CGG | + | chr1_2:43449201-43449220 | None:intergenic | 35.0% |
| GAACTGGTATAATGAGCATA+TGG | - | chr1_2:43449241-43449260 | Msa0071500:CDS | 35.0% | |
| GGATCTAGCAGATGTAATAA+AGG | - | chr1_2:43449263-43449282 | Msa0071500:CDS | 35.0% | |
| GAAAAAAGAATGACGTGCAA+TGG | + | chr1_2:43449339-43449358 | None:intergenic | 35.0% | |
| TTGCTCTTTATTCTGATGAG+TGG | - | chr1_2:43449574-43449593 | Msa0071500:CDS | 35.0% | |
| ! | AATGTTTGTGCAGGGTTTTA+AGG | - | chr1_2:43449762-43449781 | Msa0071500:intron | 35.0% |
| !! | ATGTTTGTGCAGGGTTTTAA+GGG | - | chr1_2:43449763-43449782 | Msa0071500:intron | 35.0% |
| CGAATTACCTCGAAAATACT+TGG | + | chr1_2:43449880-43449899 | None:intergenic | 35.0% | |
| !! | ATGAAGTTATTTTGTGTGGC+AGG | - | chr1_2:43449958-43449977 | Msa0071500:five_prime_UTR | 35.0% |
| CAGGCCAAAATATTCCATTA+TGG | - | chr1_2:43449084-43449103 | Msa0071500:intron | 35.0% | |
| TCAAACTGATGGAACCATAA+TGG | + | chr1_2:43449101-43449120 | None:intergenic | 35.0% | |
| ! | CATGGTGTCAATCTCAAATT+CGG | + | chr1_2:43449201-43449220 | None:intergenic | 35.0% |
| GAACTGGTATAATGAGCATA+TGG | - | chr1_2:43449241-43449260 | Msa0071500:CDS | 35.0% | |
| GGATCTAGCAGATGTAATAA+AGG | - | chr1_2:43449263-43449282 | Msa0071500:CDS | 35.0% | |
| GAAAAAAGAATGACGTGCAA+TGG | + | chr1_2:43449339-43449358 | None:intergenic | 35.0% | |
| TTGCTCTTTATTCTGATGAG+TGG | - | chr1_2:43449574-43449593 | Msa0071500:CDS | 35.0% | |
| ! | AATGTTTGTGCAGGGTTTTA+AGG | - | chr1_2:43449762-43449781 | Msa0071500:intron | 35.0% |
| !! | ATGTTTGTGCAGGGTTTTAA+GGG | - | chr1_2:43449763-43449782 | Msa0071500:intron | 35.0% |
| CGAATTACCTCGAAAATACT+TGG | + | chr1_2:43449880-43449899 | None:intergenic | 35.0% | |
| !! | ATGAAGTTATTTTGTGTGGC+AGG | - | chr1_2:43449958-43449977 | Msa0071500:five_prime_UTR | 35.0% |
| AGAGTCTTTAGCGATTCTCA+AGG | + | chr1_2:43449157-43449176 | None:intergenic | 40.0% | |
| ! | CGAATTTGAGATTGACACCA+TGG | - | chr1_2:43449199-43449218 | Msa0071500:CDS | 40.0% |
| TATTGTTACTGAAGGGTCGA+AGG | - | chr1_2:43449499-43449518 | Msa0071500:intron | 40.0% | |
| ATTGTTACTGAAGGGTCGAA+GGG | - | chr1_2:43449500-43449519 | Msa0071500:intron | 40.0% | |
| GGGTTGTAGATATTACACCA+AGG | - | chr1_2:43449520-43449539 | Msa0071500:intron | 40.0% | |
| !! | TGATGAGTGGACTGAAATGT+TGG | - | chr1_2:43449587-43449606 | Msa0071500:CDS | 40.0% |
| ACTAGCAGGTTGTAAACCAT+GGG | - | chr1_2:43449658-43449677 | Msa0071500:intron | 40.0% | |
| AATCACTGTTAGCTGAATGC+TGG | + | chr1_2:43449738-43449757 | None:intergenic | 40.0% | |
| ! | CTGGTGATGCATTTGTTAGT+GGG | - | chr1_2:43449830-43449849 | Msa0071500:five_prime_UTR | 40.0% |
| ! | TTCTGACCCAAGTATTTTCG+AGG | - | chr1_2:43449870-43449889 | Msa0071500:five_prime_UTR | 40.0% |
| !! | TTATTTTGTGTGGCAGGATG+AGG | - | chr1_2:43449964-43449983 | Msa0071500:five_prime_UTR | 40.0% |
| ! | AAGCGTTCTGTTTTGCCATT+TGG | - | chr1_2:43449999-43450018 | Msa0071500:five_prime_UTR | 40.0% |
| AGAGTCTTTAGCGATTCTCA+AGG | + | chr1_2:43449157-43449176 | None:intergenic | 40.0% | |
| ! | CGAATTTGAGATTGACACCA+TGG | - | chr1_2:43449199-43449218 | Msa0071500:CDS | 40.0% |
| TATTGTTACTGAAGGGTCGA+AGG | - | chr1_2:43449499-43449518 | Msa0071500:intron | 40.0% | |
| ATTGTTACTGAAGGGTCGAA+GGG | - | chr1_2:43449500-43449519 | Msa0071500:intron | 40.0% | |
| GGGTTGTAGATATTACACCA+AGG | - | chr1_2:43449520-43449539 | Msa0071500:intron | 40.0% | |
| !! | TGATGAGTGGACTGAAATGT+TGG | - | chr1_2:43449587-43449606 | Msa0071500:CDS | 40.0% |
| ACTAGCAGGTTGTAAACCAT+GGG | - | chr1_2:43449658-43449677 | Msa0071500:intron | 40.0% | |
| AATCACTGTTAGCTGAATGC+TGG | + | chr1_2:43449738-43449757 | None:intergenic | 40.0% | |
| ! | CTGGTGATGCATTTGTTAGT+GGG | - | chr1_2:43449830-43449849 | Msa0071500:five_prime_UTR | 40.0% |
| ! | TTCTGACCCAAGTATTTTCG+AGG | - | chr1_2:43449870-43449889 | Msa0071500:five_prime_UTR | 40.0% |
| !! | TTATTTTGTGTGGCAGGATG+AGG | - | chr1_2:43449964-43449983 | Msa0071500:five_prime_UTR | 40.0% |
| TGGCTCGTCAATCAAACTGA+TGG | + | chr1_2:43449112-43449131 | None:intergenic | 45.0% | |
| TGACTTTGGCAAGCTTACCT+TGG | + | chr1_2:43449540-43449559 | None:intergenic | 45.0% | |
| GACTAGCAGGTTGTAAACCA+TGG | - | chr1_2:43449657-43449676 | Msa0071500:intron | 45.0% | |
| GTTGAACCTGTTGACACAAC+TGG | - | chr1_2:43449805-43449824 | Msa0071500:exon | 45.0% | |
| ! | GCTGGTGATGCATTTGTTAG+TGG | - | chr1_2:43449829-43449848 | Msa0071500:five_prime_UTR | 45.0% |
| TGGCAAAACAGAACGCTTCT+CGG | + | chr1_2:43449997-43450016 | None:intergenic | 45.0% | |
| TGGCTCGTCAATCAAACTGA+TGG | + | chr1_2:43449112-43449131 | None:intergenic | 45.0% | |
| TGACTTTGGCAAGCTTACCT+TGG | + | chr1_2:43449540-43449559 | None:intergenic | 45.0% | |
| GACTAGCAGGTTGTAAACCA+TGG | - | chr1_2:43449657-43449676 | Msa0071500:intron | 45.0% | |
| GTTGAACCTGTTGACACAAC+TGG | - | chr1_2:43449805-43449824 | Msa0071500:exon | 45.0% | |
| ! | GCTGGTGATGCATTTGTTAG+TGG | - | chr1_2:43449829-43449848 | Msa0071500:five_prime_UTR | 45.0% |
| TGGCAAAACAGAACGCTTCT+CGG | + | chr1_2:43449997-43450016 | None:intergenic | 45.0% | |
| GATTGACGAGCCATGCAAGT+CGG | - | chr1_2:43449119-43449138 | Msa0071500:intron | 50.0% | |
| CACTCTCAATGACGACTAGC+AGG | - | chr1_2:43449644-43449663 | Msa0071500:CDS | 50.0% | |
| CAGGTTGTAAACCATGGGCA+AGG | - | chr1_2:43449663-43449682 | Msa0071500:intron | 50.0% | |
| CTCAAAGCAAACCTTGCCCA+TGG | + | chr1_2:43449677-43449696 | None:intergenic | 50.0% | |
| ! | CATGGGCAAGGTTTGCTTTG+AGG | - | chr1_2:43449675-43449694 | Msa0071500:intron | 50.0% |
| GATTGACGAGCCATGCAAGT+CGG | - | chr1_2:43449119-43449138 | Msa0071500:intron | 50.0% | |
| CACTCTCAATGACGACTAGC+AGG | - | chr1_2:43449644-43449663 | Msa0071500:CDS | 50.0% | |
| CAGGTTGTAAACCATGGGCA+AGG | - | chr1_2:43449663-43449682 | Msa0071500:intron | 50.0% | |
| CTCAAAGCAAACCTTGCCCA+TGG | + | chr1_2:43449677-43449696 | None:intergenic | 50.0% | |
| ! | CATGGGCAAGGTTTGCTTTG+AGG | - | chr1_2:43449675-43449694 | Msa0071500:intron | 50.0% |
| !! | GCAAGATGAGCCGACTTGCA+TGG | + | chr1_2:43449132-43449151 | None:intergenic | 55.0% |
| CCAGCACCAGTTGTGTCAAC+AGG | + | chr1_2:43449814-43449833 | None:intergenic | 55.0% | |
| CCTGTTGACACAACTGGTGC+TGG | - | chr1_2:43449811-43449830 | Msa0071500:exon | 55.0% | |
| !! | GCAAGATGAGCCGACTTGCA+TGG | + | chr1_2:43449132-43449151 | None:intergenic | 55.0% |
| CCAGCACCAGTTGTGTCAAC+AGG | + | chr1_2:43449814-43449833 | None:intergenic | 55.0% | |
| CCTGTTGACACAACTGGTGC+TGG | - | chr1_2:43449811-43449830 | Msa0071500:exon | 55.0% | |
| GACACCATGGCCATCAGACG+AGG | - | chr1_2:43449212-43449231 | Msa0071500:CDS | 60.0% | |
| GTTCGAGCAGCCTCGTCTGA+TGG | + | chr1_2:43449225-43449244 | None:intergenic | 60.0% | |
| TCAGACGAGGCTGCTCGAAC+TGG | - | chr1_2:43449225-43449244 | Msa0071500:CDS | 60.0% | |
| GACACCATGGCCATCAGACG+AGG | - | chr1_2:43449212-43449231 | Msa0071500:CDS | 60.0% | |
| GTTCGAGCAGCCTCGTCTGA+TGG | + | chr1_2:43449225-43449244 | None:intergenic | 60.0% | |
| TCAGACGAGGCTGCTCGAAC+TGG | - | chr1_2:43449225-43449244 | Msa0071500:CDS | 60.0% | |
| GCAGCCTCGTCTGATGGCCA+TGG | + | chr1_2:43449219-43449238 | None:intergenic | 65.0% | |
| GCAGCCTCGTCTGATGGCCA+TGG | + | chr1_2:43449219-43449238 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 43449046 | 43450018 | 43449046 | ID=Msa0071500;Name=Msa0071500 |
| chr1_2 | mRNA | 43449046 | 43450018 | 43449046 | ID=Msa0071500-mRNA-1;Parent=Msa0071500;Name=Msa0071500-mRNA-1;_AED=0.11;_eAED=0.11;_QI=206|0.66|0.75|1|1|1|4|0|110 |
| chr1_2 | exon | 43449046 | 43449084 | 43449046 | ID=Msa0071500-mRNA-1:exon:13116;Parent=Msa0071500-mRNA-1 |
| chr1_2 | exon | 43449173 | 43449289 | 43449173 | ID=Msa0071500-mRNA-1:exon:13115;Parent=Msa0071500-mRNA-1 |
| chr1_2 | exon | 43449523 | 43449663 | 43449523 | ID=Msa0071500-mRNA-1:exon:13114;Parent=Msa0071500-mRNA-1 |
| chr1_2 | exon | 43449780 | 43450018 | 43449780 | ID=Msa0071500-mRNA-1:exon:13113;Parent=Msa0071500-mRNA-1 |
| chr1_2 | five_prime_UTR | 43449813 | 43450018 | 43449813 | ID=Msa0071500-mRNA-1:five_prime_utr;Parent=Msa0071500-mRNA-1 |
| chr1_2 | CDS | 43449780 | 43449812 | 43449780 | ID=Msa0071500-mRNA-1:cds;Parent=Msa0071500-mRNA-1 |
| chr1_2 | CDS | 43449523 | 43449663 | 43449523 | ID=Msa0071500-mRNA-1:cds;Parent=Msa0071500-mRNA-1 |
| chr1_2 | CDS | 43449173 | 43449289 | 43449173 | ID=Msa0071500-mRNA-1:cds;Parent=Msa0071500-mRNA-1 |
| chr1_2 | CDS | 43449046 | 43449084 | 43449046 | ID=Msa0071500-mRNA-1:cds;Parent=Msa0071500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
