Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541130 | PNX74702.1 | 61.856 | 291 | 69 | 3 | 46 | 295 | 90 | 379 | 4.57e-121 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541130 | sp|B9FJG3|RSLE1_ORYSJ | 30.851 | 282 | 149 | 4 | 46 | 285 | 426 | 703 | 5.24e-37 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541130 | A0A3Q7XA66 | 57.931 | 290 | 81 | 4 | 50 | 298 | 2 | 291 | 1.27e-106 | 322 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003890 | Msa0541130 | 0.805535 | 1.273890e-49 | -8.615850e-47 |
| Msa0006070 | Msa0541130 | 0.819029 | 1.439015e-52 | -8.615850e-47 |
| Msa0006110 | Msa0541130 | 0.813395 | 2.615997e-51 | -8.615850e-47 |
| Msa0011170 | Msa0541130 | 0.815156 | 1.068191e-51 | -8.615850e-47 |
| Msa0015390 | Msa0541130 | 0.814914 | 1.208500e-51 | -8.615850e-47 |
| Msa0017510 | Msa0541130 | 0.824309 | 8.655895e-54 | -8.615850e-47 |
| Msa0020410 | Msa0541130 | 0.801308 | 9.573779e-49 | -8.615850e-47 |
| Msa0036140 | Msa0541130 | 0.804304 | 2.304116e-49 | -8.615850e-47 |
| Msa0037880 | Msa0541130 | 0.805452 | 1.325622e-49 | -8.615850e-47 |
| Msa0044000 | Msa0541130 | 0.802117 | 6.533310e-49 | -8.615850e-47 |
| Msa0044260 | Msa0541130 | 0.816150 | 6.415289e-52 | -8.615850e-47 |
| Msa0044330 | Msa0541130 | 0.819370 | 1.203494e-52 | -8.615850e-47 |
| Msa0052730 | Msa0541130 | 0.806277 | 8.895074e-50 | -8.615850e-47 |
| Msa0054480 | Msa0541130 | 0.804186 | 2.437976e-49 | -8.615850e-47 |
| Msa0064970 | Msa0541130 | 0.804831 | 1.788216e-49 | -8.615850e-47 |
| Msa0068740 | Msa0541130 | -0.802462 | 5.547370e-49 | -8.615850e-47 |
| Msa0071500 | Msa0541130 | 0.806891 | 6.598683e-50 | -8.615850e-47 |
| Msa0074700 | Msa0541130 | 0.810999 | 8.717530e-51 | -8.615850e-47 |
| Msa0075470 | Msa0541130 | 0.808180 | 3.515891e-50 | -8.615850e-47 |
| Msa0078900 | Msa0541130 | 0.805361 | 1.385281e-49 | -8.615850e-47 |
| Msa0084380 | Msa0541130 | 0.823105 | 1.656310e-53 | -8.615850e-47 |
| Msa0091210 | Msa0541130 | -0.800996 | 1.108858e-48 | -8.615850e-47 |
| Msa0095560 | Msa0541130 | 0.808527 | 2.965073e-50 | -8.615850e-47 |
| Msa0112750 | Msa0541130 | 0.822415 | 2.398340e-53 | -8.615850e-47 |
| Msa0114060 | Msa0541130 | 0.827822 | 1.265379e-54 | -8.615850e-47 |
| Msa0119960 | Msa0541130 | 0.819423 | 1.170737e-52 | -8.615850e-47 |
| Msa0127800 | Msa0541130 | 0.801151 | 1.030899e-48 | -8.615850e-47 |
| Msa0131770 | Msa0541130 | 0.825348 | 4.923014e-54 | -8.615850e-47 |
| Msa0142220 | Msa0541130 | 0.832110 | 1.139483e-55 | -8.615850e-47 |
| Msa0157290 | Msa0541130 | 0.824906 | 6.260931e-54 | -8.615850e-47 |
| Msa0161900 | Msa0541130 | 0.811368 | 7.248812e-51 | -8.615850e-47 |
| Msa0166870 | Msa0541130 | 0.801630 | 8.222064e-49 | -8.615850e-47 |
| Msa0178930 | Msa0541130 | 0.832240 | 1.058515e-55 | -8.615850e-47 |
| Msa0188460 | Msa0541130 | 0.821643 | 3.619604e-53 | -8.615850e-47 |
| Msa0208090 | Msa0541130 | 0.835883 | 1.294734e-56 | -8.615850e-47 |
| Msa0210450 | Msa0541130 | 0.825820 | 3.805917e-54 | -8.615850e-47 |
| Msa0212990 | Msa0541130 | 0.811781 | 5.897440e-51 | -8.615850e-47 |
| Msa0216910 | Msa0541130 | 0.802664 | 5.039157e-49 | -8.615850e-47 |
| Msa0220580 | Msa0541130 | 0.811099 | 8.291635e-51 | -8.615850e-47 |
| Msa0222890 | Msa0541130 | 0.816608 | 5.064937e-52 | -8.615850e-47 |
| Msa0223410 | Msa0541130 | -0.802570 | 5.269101e-49 | -8.615850e-47 |
| Msa0231000 | Msa0541130 | 0.800113 | 1.678395e-48 | -8.615850e-47 |
| Msa0371730 | Msa0541130 | 0.813358 | 2.665235e-51 | -8.615850e-47 |
| Msa0379640 | Msa0541130 | 0.806293 | 8.827285e-50 | -8.615850e-47 |
| Msa0381610 | Msa0541130 | -0.807614 | 4.638632e-50 | -8.615850e-47 |
| Msa0388950 | Msa0541130 | 0.814373 | 1.592380e-51 | -8.615850e-47 |
| Msa0395970 | Msa0541130 | 0.803289 | 3.742448e-49 | -8.615850e-47 |
| Msa0402290 | Msa0541130 | 0.814617 | 1.406189e-51 | -8.615850e-47 |
| Msa0407750 | Msa0541130 | 0.827440 | 1.562715e-54 | -8.615850e-47 |
| Msa0411390 | Msa0541130 | 0.801331 | 9.470500e-49 | -8.615850e-47 |
| Msa0412840 | Msa0541130 | 0.801004 | 1.104676e-48 | -8.615850e-47 |
| Msa0430420 | Msa0541130 | 0.819400 | 1.184961e-52 | -8.615850e-47 |
| Msa0431690 | Msa0541130 | 0.804512 | 2.084627e-49 | -8.615850e-47 |
| Msa0436800 | Msa0541130 | 0.824453 | 8.007895e-54 | -8.615850e-47 |
| Msa0440400 | Msa0541130 | 0.816091 | 6.612628e-52 | -8.615850e-47 |
| Msa0440750 | Msa0541130 | 0.831843 | 1.326788e-55 | -8.615850e-47 |
| Msa0443260 | Msa0541130 | 0.815265 | 1.010114e-51 | -8.615850e-47 |
| Msa0455040 | Msa0541130 | 0.810049 | 1.398154e-50 | -8.615850e-47 |
| Msa0455760 | Msa0541130 | 0.803599 | 3.227373e-49 | -8.615850e-47 |
| Msa0464680 | Msa0541130 | 0.808326 | 3.272439e-50 | -8.615850e-47 |
| Msa0466120 | Msa0541130 | 0.819037 | 1.432902e-52 | -8.615850e-47 |
| Msa0477130 | Msa0541130 | -0.806737 | 7.113328e-50 | -8.615850e-47 |
| Msa0479970 | Msa0541130 | 0.806196 | 9.249693e-50 | -8.615850e-47 |
| Msa0481530 | Msa0541130 | 0.802126 | 6.505161e-49 | -8.615850e-47 |
| Msa0251320 | Msa0541130 | 0.816592 | 5.108209e-52 | -8.615850e-47 |
| Msa0257460 | Msa0541130 | 0.826656 | 2.406911e-54 | -8.615850e-47 |
| Msa0260680 | Msa0541130 | 0.801967 | 7.011213e-49 | -8.615850e-47 |
| Msa0267370 | Msa0541130 | 0.805427 | 1.342267e-49 | -8.615850e-47 |
| Msa0270520 | Msa0541130 | 0.805106 | 1.566335e-49 | -8.615850e-47 |
| Msa0273100 | Msa0541130 | 0.805762 | 1.141265e-49 | -8.615850e-47 |
| Msa0280090 | Msa0541130 | 0.827480 | 1.528405e-54 | -8.615850e-47 |
| Msa0285450 | Msa0541130 | 0.816176 | 6.327524e-52 | -8.615850e-47 |
| Msa0287410 | Msa0541130 | 0.807279 | 5.461600e-50 | -8.615850e-47 |
| Msa0288100 | Msa0541130 | 0.805975 | 1.029760e-49 | -8.615850e-47 |
| Msa0305190 | Msa0541130 | 0.817748 | 2.807502e-52 | -8.615850e-47 |
| Msa0306210 | Msa0541130 | -0.820891 | 5.398112e-53 | -8.615850e-47 |
| Msa0319170 | Msa0541130 | 0.828241 | 1.003096e-54 | -8.615850e-47 |
| Msa0321310 | Msa0541130 | 0.801201 | 1.007033e-48 | -8.615850e-47 |
| Msa0339620 | Msa0541130 | 0.801677 | 8.043286e-49 | -8.615850e-47 |
| Msa0340450 | Msa0541130 | 0.819019 | 1.446653e-52 | -8.615850e-47 |
| Msa0345970 | Msa0541130 | 0.812960 | 3.259190e-51 | -8.615850e-47 |
| Msa0355220 | Msa0541130 | 0.811058 | 8.462557e-51 | -8.615850e-47 |
| Msa0357340 | Msa0541130 | 0.805721 | 1.164240e-49 | -8.615850e-47 |
| Msa0363790 | Msa0541130 | 0.811604 | 6.443123e-51 | -8.615850e-47 |
| Msa0484780 | Msa0541130 | 0.815076 | 1.112584e-51 | -8.615850e-47 |
| Msa0488560 | Msa0541130 | 0.800680 | 1.286490e-48 | -8.615850e-47 |
| Msa0512750 | Msa0541130 | 0.820930 | 5.286777e-53 | -8.615850e-47 |
| Msa0512900 | Msa0541130 | 0.824336 | 8.528180e-54 | -8.615850e-47 |
| Msa0517110 | Msa0541130 | 0.808015 | 3.811127e-50 | -8.615850e-47 |
| Msa0518380 | Msa0541130 | 0.800770 | 1.233319e-48 | -8.615850e-47 |
| Msa0532350 | Msa0541130 | 0.818184 | 2.237998e-52 | -8.615850e-47 |
| Msa0534910 | Msa0541130 | 0.817709 | 2.864443e-52 | -8.615850e-47 |
| Msa0541130 | Msa0547320 | 0.824884 | 6.338216e-54 | -8.615850e-47 |
| Msa0541130 | Msa0564390 | 0.819161 | 1.342779e-52 | -8.615850e-47 |
| Msa0541130 | Msa0575700 | 0.816508 | 5.335111e-52 | -8.615850e-47 |
| Msa0541130 | Msa0585560 | 0.801150 | 1.031347e-48 | -8.615850e-47 |
| Msa0541130 | Msa0598780 | 0.813398 | 2.611484e-51 | -8.615850e-47 |
| Msa0541130 | Msa0599890 | 0.803499 | 3.386751e-49 | -8.615850e-47 |
| Msa0541130 | Msa0610430 | 0.829613 | 4.667530e-55 | -8.615850e-47 |
| Msa0541130 | Msa0617640 | 0.823434 | 1.388183e-53 | -8.615850e-47 |
| Msa0541130 | Msa0620960 | 0.825781 | 3.887423e-54 | -8.615850e-47 |
| Msa0541130 | Msa0626090 | 0.824257 | 8.901674e-54 | -8.615850e-47 |
| Msa0541130 | Msa0657970 | 0.835609 | 1.518726e-56 | -8.615850e-47 |
| Msa0541130 | Msa0661190 | -0.803504 | 3.377205e-49 | -8.615850e-47 |
| Msa0541130 | Msa0661650 | 0.816274 | 6.018846e-52 | -8.615850e-47 |
| Msa0541130 | Msa0663390 | 0.806135 | 9.529957e-50 | -8.615850e-47 |
| Msa0541130 | Msa0663810 | 0.816624 | 5.024634e-52 | -8.615850e-47 |
| Msa0541130 | Msa0665020 | 0.807829 | 4.175138e-50 | -8.615850e-47 |
| Msa0541130 | Msa0669320 | 0.803036 | 4.221665e-49 | -8.615850e-47 |
| Msa0541130 | Msa0673460 | 0.828121 | 1.071993e-54 | -8.615850e-47 |
| Msa0541130 | Msa0681270 | 0.805651 | 1.204109e-49 | -8.615850e-47 |
| Msa0541130 | Msa0688270 | 0.833891 | 4.108872e-56 | -8.615850e-47 |
| Msa0541130 | Msa0692040 | -0.815102 | 1.098153e-51 | -8.615850e-47 |
| Msa0541130 | Msa0697060 | 0.804283 | 2.326809e-49 | -8.615850e-47 |
| Msa0541130 | Msa0709400 | 0.802480 | 5.498257e-49 | -8.615850e-47 |
| Msa0541130 | Msa0731940 | 0.839216 | 1.809862e-57 | -8.615850e-47 |
| Msa0541130 | Msa0735170 | 0.818669 | 1.737541e-52 | -8.615850e-47 |
| Msa0541130 | Msa0740510 | 0.815649 | 8.297207e-52 | -8.615850e-47 |
| Msa0541130 | Msa0743720 | 0.813635 | 2.316500e-51 | -8.615850e-47 |
| Msa0541130 | Msa0744170 | -0.800728 | 1.257602e-48 | -8.615850e-47 |
| Msa0541130 | Msa0762970 | 0.800506 | 1.395684e-48 | -8.615850e-47 |
| Msa0541130 | Msa0764960 | 0.842439 | 2.584021e-58 | -8.615850e-47 |
| Msa0541130 | Msa0766630 | 0.828646 | 8.010054e-55 | -8.615850e-47 |
| Msa0541130 | Msa0767760 | 0.801559 | 8.502560e-49 | -8.615850e-47 |
| Msa0541130 | Msa0769920 | 0.819703 | 1.010293e-52 | -8.615850e-47 |
| Msa0541130 | Msa0789250 | 0.831303 | 1.801701e-55 | -8.615850e-47 |
| Msa0541130 | Msa0790510 | 0.802051 | 6.740195e-49 | -8.615850e-47 |
| Msa0541130 | Msa0810220 | 0.830313 | 3.149988e-55 | -8.615850e-47 |
| Msa0541130 | Msa0813400 | 0.803718 | 3.050340e-49 | -8.615850e-47 |
| Msa0541130 | Msa0820770 | 0.818310 | 2.095531e-52 | -8.615850e-47 |
| Msa0541130 | Msa0820850 | 0.834910 | 2.280474e-56 | -8.615850e-47 |
| Msa0541130 | Msa0831850 | 0.803446 | 3.473487e-49 | -8.615850e-47 |
| Msa0541130 | Msa0832340 | 0.807563 | 4.755549e-50 | -8.615850e-47 |
| Msa0541130 | Msa0833300 | 0.801560 | 8.499107e-49 | -8.615850e-47 |
| Msa0541130 | Msa0840820 | 0.806667 | 7.359039e-50 | -8.615850e-47 |
| Msa0541130 | Msa0843780 | -0.802616 | 5.156448e-49 | -8.615850e-47 |
| Msa0541130 | Msa0849030 | 0.815883 | 7.356793e-52 | -8.615850e-47 |
| Msa0541130 | Msa0861090 | 0.814225 | 1.717255e-51 | -8.615850e-47 |
| Msa0541130 | Msa0861130 | 0.837922 | 3.903847e-57 | -8.615850e-47 |
| Msa0541130 | Msa0874980 | 0.804601 | 1.997428e-49 | -8.615850e-47 |
| Msa0541130 | Msa0880020 | 0.801869 | 7.346491e-49 | -8.615850e-47 |
| Msa0541130 | Msa0880140 | 0.819478 | 1.137430e-52 | -8.615850e-47 |
| Msa0541130 | Msa0885280 | 0.819363 | 1.207790e-52 | -8.615850e-47 |
| Msa0541130 | Msa0897330 | 0.821326 | 4.284882e-53 | -8.615850e-47 |
| Msa0541130 | Msa0898750 | 0.816798 | 4.591500e-52 | -8.615850e-47 |
| Msa0541130 | Msa0901400 | 0.812213 | 4.747595e-51 | -8.615850e-47 |
| Msa0541130 | Msa0907070 | 0.809464 | 1.867772e-50 | -8.615850e-47 |
| Msa0541130 | Msa0925290 | 0.809315 | 2.010672e-50 | -8.615850e-47 |
| Msa0541130 | Msa0927290 | 0.818012 | 2.447156e-52 | -8.615850e-47 |
| Msa0541130 | Msa0928130 | 0.809070 | 2.269317e-50 | -8.615850e-47 |
| Msa0541130 | Msa0933100 | 0.822368 | 2.459488e-53 | -8.615850e-47 |
| Msa0541130 | Msa0935910 | 0.803764 | 2.983819e-49 | -8.615850e-47 |
| Msa0541130 | Msa0938220 | 0.801866 | 7.356819e-49 | -8.615850e-47 |
| Msa0541130 | Msa0947660 | 0.819029 | 1.439145e-52 | -8.615850e-47 |
| Msa0541130 | Msa0954910 | 0.809131 | 2.202111e-50 | -8.615850e-47 |
| Msa0541130 | Msa0964310 | 0.812203 | 4.770267e-51 | -8.615850e-47 |
| Msa0541130 | Msa0965610 | 0.801456 | 8.929425e-49 | -8.615850e-47 |
| Msa0541130 | Msa0969450 | 0.816059 | 6.719780e-52 | -8.615850e-47 |
| Msa0541130 | Msa0969520 | 0.841250 | 5.324726e-58 | -8.615850e-47 |
| Msa0541130 | Msa0969600 | 0.808145 | 3.575862e-50 | -8.615850e-47 |
| Msa0541130 | Msa0974070 | 0.816202 | 6.243391e-52 | -8.615850e-47 |
| Msa0541130 | Msa0975220 | 0.803161 | 3.977335e-49 | -8.615850e-47 |
| Msa0541130 | Msa0976670 | 0.818856 | 1.575894e-52 | -8.615850e-47 |
| Msa0541130 | Msa0993290 | 0.834748 | 2.505139e-56 | -8.615850e-47 |
| Msa0541130 | Msa0993600 | 0.834022 | 3.810114e-56 | -8.615850e-47 |
| Msa0541130 | Msa0998690 | 0.808122 | 3.617175e-50 | -8.615850e-47 |
| Msa0541130 | Msa1003620 | 0.827250 | 1.735121e-54 | -8.615850e-47 |
| Msa0541130 | Msa1014540 | 0.837416 | 5.265927e-57 | -8.615850e-47 |
| Msa0541130 | Msa1023950 | 0.843486 | 1.360803e-58 | -8.615850e-47 |
| Msa0541130 | Msa1028970 | 0.804384 | 2.217038e-49 | -8.615850e-47 |
| Msa0541130 | Msa1035480 | 0.816247 | 6.100644e-52 | -8.615850e-47 |
| Msa0541130 | Msa1046460 | 0.816090 | 6.613503e-52 | -8.615850e-47 |
| Msa0541130 | Msa1061680 | 0.817319 | 3.506871e-52 | -8.615850e-47 |
| Msa0541130 | Msa1075220 | -0.824075 | 9.822600e-54 | -8.615850e-47 |
| Msa0541130 | Msa1075540 | 0.836780 | 7.655172e-57 | -8.615850e-47 |
| Msa0541130 | Msa1075650 | 0.833497 | 5.154841e-56 | -8.615850e-47 |
| Msa0541130 | Msa1082500 | 0.834798 | 2.434112e-56 | -8.615850e-47 |
| Msa0541130 | Msa1083840 | 0.808789 | 2.606073e-50 | -8.615850e-47 |
| Msa0541130 | Msa1100050 | 0.815401 | 9.419557e-52 | -8.615850e-47 |
| Msa0541130 | Msa1104090 | 0.800730 | 1.256379e-48 | -8.615850e-47 |
| Msa0541130 | Msa1109680 | 0.803320 | 3.687708e-49 | -8.615850e-47 |
| Msa0541130 | Msa1113170 | 0.816790 | 4.612224e-52 | -8.615850e-47 |
| Msa0541130 | Msa1114030 | 0.801778 | 7.668532e-49 | -8.615850e-47 |
| Msa0541130 | Msa1116260 | 0.806660 | 7.383160e-50 | -8.615850e-47 |
| Msa0541130 | Msa1119480 | 0.819883 | 9.193074e-53 | -8.615850e-47 |
| Msa0541130 | Msa1121480 | 0.809241 | 2.085374e-50 | -8.615850e-47 |
| Msa0541130 | Msa1121490 | 0.836613 | 8.443603e-57 | -8.615850e-47 |
| Msa0541130 | Msa1124960 | 0.806048 | 9.940338e-50 | -8.615850e-47 |
| Msa0541130 | Msa1131220 | 0.819636 | 1.046882e-52 | -8.615850e-47 |
| Msa0541130 | Msa1136090 | 0.801130 | 1.041056e-48 | -8.615850e-47 |
| Msa0541130 | Msa1137570 | 0.820744 | 5.834242e-53 | -8.615850e-47 |
| Msa0541130 | Msa1137690 | 0.806716 | 7.186407e-50 | -8.615850e-47 |
| Msa0541130 | Msa1154280 | 0.816678 | 4.886874e-52 | -8.615850e-47 |
| Msa0541130 | Msa1162550 | -0.818116 | 2.318419e-52 | -8.615850e-47 |
| Msa0541130 | Msa1162780 | 0.810352 | 1.202745e-50 | -8.615850e-47 |
| Msa0541130 | Msa1173100 | 0.815279 | 1.002976e-51 | -8.615850e-47 |
| Msa0541130 | Msa1174040 | 0.834054 | 3.741259e-56 | -8.615850e-47 |
| Msa0541130 | Msa1179770 | 0.807303 | 5.400275e-50 | -8.615850e-47 |
| Msa0541130 | Msa1186950 | -0.812340 | 4.453394e-51 | -8.615850e-47 |
| Msa0541130 | Msa1187950 | 0.817207 | 3.717690e-52 | -8.615850e-47 |
| Msa0541130 | Msa1193290 | 0.821001 | 5.092135e-53 | -8.615850e-47 |
| Msa0541130 | Msa1228590 | 0.816205 | 6.235615e-52 | -8.615850e-47 |
| Msa0541130 | Msa1244250 | 0.812189 | 4.803815e-51 | -8.615850e-47 |
| Msa0541130 | Msa1246510 | 0.811755 | 5.974890e-51 | -8.615850e-47 |
| Msa0541130 | Msa1249490 | 0.807439 | 5.053029e-50 | -8.615850e-47 |
| Msa0541130 | Msa1251910 | 0.812625 | 3.859610e-51 | -8.615850e-47 |
| Msa0541130 | Msa1252140 | 0.801402 | 9.157787e-49 | -8.615850e-47 |
| Msa0541130 | Msa1253020 | 0.827240 | 1.745386e-54 | -8.615850e-47 |
| Msa0541130 | Msa1277660 | 0.832246 | 1.054920e-55 | -8.615850e-47 |
| Msa0541130 | Msa1282580 | -0.822664 | 2.098522e-53 | -8.615850e-47 |
| Msa0541130 | Msa1284680 | 0.848902 | 4.557335e-60 | -8.615850e-47 |
| Msa0541130 | Msa1305340 | 0.811998 | 5.289197e-51 | -8.615850e-47 |
| Msa0541130 | Msa1313140 | 0.820855 | 5.501907e-53 | -8.615850e-47 |
| Msa0541130 | Msa1325860 | -0.820235 | 7.635514e-53 | -8.615850e-47 |
| Msa0541130 | Msa1327680 | 0.814202 | 1.737417e-51 | -8.615850e-47 |
| Msa0541130 | Msa1336670 | 0.807786 | 4.262850e-50 | -8.615850e-47 |
| Msa0541130 | Msa1343760 | 0.801129 | 1.041764e-48 | -8.615850e-47 |
| Msa0541130 | Msa1345920 | 0.825380 | 4.837682e-54 | -8.615850e-47 |
| Msa0541130 | Msa1353470 | 0.839944 | 1.170503e-57 | -8.615850e-47 |
| Msa0541130 | Msa1359040 | 0.815712 | 8.034819e-52 | -8.615850e-47 |
| Msa0541130 | Msa1366810 | 0.806252 | 9.003012e-50 | -8.615850e-47 |
| Msa0541130 | Msa1370070 | -0.824568 | 7.523554e-54 | -8.615850e-47 |
| Msa0541130 | Msa1373030 | 0.825584 | 4.328280e-54 | -8.615850e-47 |
| Msa0541130 | Msa1377500 | 0.805098 | 1.573076e-49 | -8.615850e-47 |
| Msa0541130 | Msa1397860 | 0.811081 | 8.367313e-51 | -8.615850e-47 |
| Msa0541130 | Msa1411020 | 0.804499 | 2.097868e-49 | -8.615850e-47 |
| Msa0541130 | Msa1423870 | 0.809649 | 1.704505e-50 | -8.615850e-47 |
| Msa0541130 | Msa1424750 | 0.804356 | 2.247295e-49 | -8.615850e-47 |
| Msa0541130 | Msa1427230 | 0.815455 | 9.165811e-52 | -8.615850e-47 |
| Msa0541130 | Msa1434350 | 0.801191 | 1.011384e-48 | -8.615850e-47 |
| Msa0541130 | Msa1439320 | 0.803183 | 3.936382e-49 | -8.615850e-47 |
| Msa0541130 | Msa1449340 | -0.801622 | 8.253308e-49 | -8.615850e-47 |
| Msa0541130 | Msa1451570 | 0.800032 | 1.742869e-48 | -8.615850e-47 |
| Msa0541130 | Msa1451620 | -0.808084 | 3.685472e-50 | -8.615850e-47 |
| Msa0541130 | Msa1452240 | 0.801846 | 7.425082e-49 | -8.615850e-47 |
| Msa0541130 | Msa1460830 | 0.814882 | 1.228379e-51 | -8.615850e-47 |
| Msa0541130 | Msa1464940 | 0.812289 | 4.569817e-51 | -8.615850e-47 |
| Msa0541130 | Msa1466540 | 0.854483 | 1.194499e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541130 | MtrunA17_Chr4g0053391 | 42.586 | 263 | 110 | 4 | 66 | 295 | 1 | 255 | 9.38e-64 | 202 |
| Msa0541130 | MtrunA17_Chr4g0052681 | 40.072 | 277 | 127 | 4 | 48 | 287 | 287 | 561 | 3.37e-59 | 199 |
| Msa0541130 | MtrunA17_Chr8g0383041 | 39.711 | 277 | 131 | 4 | 48 | 290 | 287 | 561 | 2.20e-58 | 197 |
| Msa0541130 | MtrunA17_Chr8g0383081 | 37.857 | 280 | 140 | 4 | 48 | 295 | 284 | 561 | 6.23e-58 | 195 |
| Msa0541130 | MtrunA17_Chr8g0383211 | 39.583 | 288 | 145 | 7 | 29 | 288 | 353 | 639 | 1.10e-55 | 191 |
| Msa0541130 | MtrunA17_Chr5g0408131 | 40.889 | 225 | 104 | 4 | 94 | 292 | 5 | 226 | 2.43e-48 | 161 |
| Msa0541130 | MtrunA17_Chr8g0390371 | 78.313 | 83 | 18 | 0 | 208 | 290 | 1 | 83 | 1.53e-43 | 144 |
| Msa0541130 | MtrunA17_Chr1g0192041 | 47.407 | 135 | 68 | 1 | 46 | 177 | 89 | 223 | 1.61e-38 | 136 |
| Msa0541130 | MtrunA17_Chr7g0263231 | 31.359 | 287 | 153 | 5 | 46 | 293 | 797 | 1078 | 1.84e-37 | 141 |
| Msa0541130 | MtrunA17_Chr8g0359341 | 32.734 | 278 | 151 | 4 | 48 | 294 | 444 | 716 | 4.99e-37 | 139 |
| Msa0541130 | MtrunA17_Chr5g0402891 | 33.208 | 265 | 142 | 8 | 55 | 284 | 314 | 578 | 3.47e-36 | 137 |
| Msa0541130 | MtrunA17_Chr8g0354631 | 29.818 | 275 | 147 | 7 | 55 | 284 | 429 | 702 | 1.97e-34 | 132 |
| Msa0541130 | MtrunA17_Chr7g0263261 | 32.404 | 287 | 150 | 7 | 46 | 293 | 738 | 1019 | 2.54e-34 | 132 |
| Msa0541130 | MtrunA17_Chr2g0308821 | 31.387 | 274 | 144 | 6 | 56 | 290 | 396 | 664 | 1.55e-33 | 129 |
| Msa0541130 | MtrunA17_Chr8g0383061 | 35.922 | 206 | 95 | 4 | 113 | 287 | 1 | 200 | 1.08e-31 | 117 |
| Msa0541130 | MtrunA17_Chr4g0052611 | 34.146 | 205 | 115 | 5 | 107 | 291 | 6 | 210 | 1.42e-30 | 115 |
| Msa0541130 | MtrunA17_Chr2g0333261 | 27.273 | 275 | 155 | 4 | 58 | 291 | 415 | 685 | 2.10e-26 | 108 |
| Msa0541130 | MtrunA17_Chr3g0108001 | 56.627 | 83 | 36 | 0 | 215 | 297 | 4 | 86 | 3.55e-26 | 99.8 |
| Msa0541130 | MtrunA17_Chr4g0003151 | 26.259 | 278 | 158 | 4 | 58 | 292 | 396 | 669 | 9.46e-26 | 107 |
| Msa0541130 | MtrunA17_Chr8g0383171 | 37.222 | 180 | 85 | 4 | 135 | 288 | 58 | 235 | 3.28e-24 | 99.0 |
| Msa0541130 | MtrunA17_Chr1g0162951 | 67.925 | 53 | 17 | 0 | 237 | 289 | 1 | 53 | 5.18e-19 | 79.3 |
| Msa0541130 | MtrunA17_Chr8g0383071 | 43.210 | 81 | 43 | 1 | 48 | 125 | 228 | 308 | 7.48e-17 | 79.3 |
| Msa0541130 | MtrunA17_Chr8g0383091 | 36.111 | 144 | 61 | 3 | 113 | 227 | 1 | 142 | 8.96e-17 | 75.9 |
| Msa0541130 | MtrunA17_Chr4g0062411 | 25.101 | 247 | 141 | 7 | 68 | 285 | 419 | 650 | 1.93e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0541130 | AT3G42170.2 | 31.496 | 254 | 159 | 3 | 46 | 284 | 399 | 652 | 2.69e-37 | 140 |
| Msa0541130 | AT3G42170.1 | 31.496 | 254 | 159 | 3 | 46 | 284 | 421 | 674 | 2.77e-37 | 140 |
Find 48 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATCATACTCACTCATTTC+AGG | 0.229469 | 4_1:-24526630 | None:intergenic |
| AGTTTGATGTACTTCTTTAT+TGG | 0.241474 | 4_1:+24526700 | Msa0541130:CDS |
| ATCAACATCTGAACGTGTTC+TGG | 0.293348 | 4_1:-24526861 | None:intergenic |
| GTATCTAGTGCTCTCTATTA+TGG | 0.294754 | 4_1:+24526740 | Msa0541130:CDS |
| AAGTTTGTGATATCATAAAA+TGG | 0.312471 | 4_1:-24526048 | None:intergenic |
| AACTCATCGTAGTTTACTTT+CGG | 0.351711 | 4_1:+24525195 | Msa0541130:CDS |
| GAAGTATTGCTATACTAAAC+TGG | 0.352709 | 4_1:+24526284 | Msa0541130:CDS |
| TTTGAATCCTTCTGCTGAAA+TGG | 0.358930 | 4_1:+24525288 | Msa0541130:CDS |
| CCATACTCAACAAAACTAAA+AGG | 0.365496 | 4_1:-24525241 | None:intergenic |
| GATATCACAAACTTGTTCTC+AGG | 0.397207 | 4_1:+24526057 | Msa0541130:CDS |
| TATTCTTGATCCACGCTTGA+AGG | 0.406408 | 4_1:+24526251 | Msa0541130:CDS |
| GTTGATTTCGGTCATGCTAA+AGG | 0.431012 | 4_1:-24525167 | None:intergenic |
| TATCATACTCACTCATTTCA+GGG | 0.442153 | 4_1:-24526629 | None:intergenic |
| TTGATTTCGGTCATGCTAAA+GGG | 0.451064 | 4_1:-24525166 | None:intergenic |
| TACAGTGTTGTACTAGCCTT+CGG | 0.451398 | 4_1:+24526225 | Msa0541130:CDS |
| TTGTCCTTCTGATGAGGAAT+GGG | 0.454396 | 4_1:+24525993 | Msa0541130:CDS |
| TGGTAAAATTTGAGAAGTAT+TGG | 0.461998 | 4_1:+24526196 | Msa0541130:CDS |
| TGTTGATCTGCACTCGGAGT+TGG | 0.472219 | 4_1:+24526877 | Msa0541130:CDS |
| TTAACTGCTGAAGCTAAGCT+TGG | 0.481769 | 4_1:+24526312 | Msa0541130:CDS |
| CTCTGATGCAACCGTGGTGA+GGG | 0.484093 | 4_1:-24526784 | None:intergenic |
| ATTGTCCTTCTGATGAGGAA+TGG | 0.500134 | 4_1:+24525992 | Msa0541130:CDS |
| TCAAATATTTCACCCACTCT+CGG | 0.506387 | 4_1:-24525270 | None:intergenic |
| GAGTCGTCTTTCAGCATTGG+TGG | 0.511679 | 4_1:+24526804 | Msa0541130:CDS |
| ATAAAATACAAATTTGCAGT+TGG | 0.512953 | 4_1:-24526090 | None:intergenic |
| CTACAGACCATTTCAGCAGA+AGG | 0.516154 | 4_1:-24525295 | None:intergenic |
| AGACATGTCCTTGGATATGA+TGG | 0.516316 | 4_1:+24526176 | Msa0541130:CDS |
| TCAGAGTCGTCTTTCAGCAT+TGG | 0.518324 | 4_1:+24526801 | Msa0541130:CDS |
| TGATGTACTTCTTTATTGGA+AGG | 0.521489 | 4_1:+24526704 | Msa0541130:CDS |
| TGCACTCGGAGTTGGCTGCA+TGG | 0.547361 | 4_1:+24526885 | Msa0541130:CDS |
| TTCTGATGAGGAATGGGAAA+GGG | 0.547458 | 4_1:+24525999 | Msa0541130:CDS |
| TAACTGCTGAAGCTAAGCTT+GGG | 0.549438 | 4_1:+24526313 | Msa0541130:CDS |
| AAGCGTGGAACTCCTATACT+TGG | 0.555136 | 4_1:-24526838 | None:intergenic |
| TAAACATTGTCCTTCTGATG+AGG | 0.557760 | 4_1:+24525987 | Msa0541130:CDS |
| AGTGATTCGAGACATGTCCT+TGG | 0.561936 | 4_1:+24526167 | Msa0541130:CDS |
| CTTTCCCATTCCTCATCAGA+AGG | 0.564810 | 4_1:-24525997 | None:intergenic |
| AGTGCTCTCTATTATGGCAC+GGG | 0.571220 | 4_1:+24526746 | Msa0541130:CDS |
| TAGTGCTCTCTATTATGGCA+CGG | 0.588385 | 4_1:+24526745 | Msa0541130:CDS |
| ACTCTGATGCAACCGTGGTG+AGG | 0.598506 | 4_1:-24526785 | None:intergenic |
| CTTCTGATGAGGAATGGGAA+AGG | 0.603754 | 4_1:+24525998 | Msa0541130:CDS |
| TTCAGATGTTGATCTGCACT+CGG | 0.611205 | 4_1:+24526871 | Msa0541130:CDS |
| CTGAACGTGTTCTGGAAGCG+TGG | 0.615810 | 4_1:-24526853 | None:intergenic |
| AGTATGGTAAAATCCGAGAG+TGG | 0.621638 | 4_1:+24525257 | Msa0541130:CDS |
| TCTGATGCAACCGTGGTGAG+GGG | 0.622550 | 4_1:-24526783 | None:intergenic |
| TGGATCAAGAATAGCTCCGA+AGG | 0.627035 | 4_1:-24526241 | None:intergenic |
| ACTTGCAAGACTTTAAAGCA+TGG | 0.632169 | 4_1:+24526583 | Msa0541130:CDS |
| GTATGGTAAAATCCGAGAGT+GGG | 0.650207 | 4_1:+24525258 | Msa0541130:CDS |
| GCTGAGCATTCCCCTCACCA+CGG | 0.687099 | 4_1:+24526773 | Msa0541130:CDS |
| AGACGACTCTGATGCAACCG+TGG | 0.722435 | 4_1:-24526790 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTGAAAAGATATATGAT+AGG | + | chr4_1:24525335-24525354 | Msa0541130:intron | 15.0% |
| !! | TATTGAAAAGATATATGATA+GGG | + | chr4_1:24525336-24525355 | Msa0541130:intron | 15.0% |
| !! | TGTGAAATACATTAAATTAT+CGG | + | chr4_1:24525795-24525814 | Msa0541130:intron | 15.0% |
| !! | ATTTGATGCAAAAATTTAAA+AGG | + | chr4_1:24526337-24526356 | Msa0541130:CDS | 15.0% |
| !! | ATATTGAAAAGATATATGAT+AGG | + | chr4_1:24525335-24525354 | Msa0541130:intron | 15.0% |
| !! | TATTGAAAAGATATATGATA+GGG | + | chr4_1:24525336-24525355 | Msa0541130:intron | 15.0% |
| !! | TGTGAAATACATTAAATTAT+CGG | + | chr4_1:24525795-24525814 | Msa0541130:intron | 15.0% |
| !! | ATTTGATGCAAAAATTTAAA+AGG | + | chr4_1:24526337-24526356 | Msa0541130:CDS | 15.0% |
| !! | AAGTTTGTGATATCATAAAA+TGG | - | chr4_1:24526051-24526070 | None:intergenic | 20.0% |
| !! | ATAAAATACAAATTTGCAGT+TGG | - | chr4_1:24526093-24526112 | None:intergenic | 20.0% |
| !!! | ATTTGTATTTTATGCAAGTA+TGG | + | chr4_1:24526100-24526119 | Msa0541130:intron | 20.0% |
| !!! | TGAGTATGATATATATTTTG+AGG | + | chr4_1:24526641-24526660 | Msa0541130:CDS | 20.0% |
| !! | AAGTTTGTGATATCATAAAA+TGG | - | chr4_1:24526051-24526070 | None:intergenic | 20.0% |
| !! | ATAAAATACAAATTTGCAGT+TGG | - | chr4_1:24526093-24526112 | None:intergenic | 20.0% |
| !!! | ATTTGTATTTTATGCAAGTA+TGG | + | chr4_1:24526100-24526119 | Msa0541130:intron | 20.0% |
| !!! | TGAGTATGATATATATTTTG+AGG | + | chr4_1:24526641-24526660 | Msa0541130:CDS | 20.0% |
| !!! | ATGAGTTTTTTGGTTGATTT+CGG | - | chr4_1:24525182-24525201 | None:intergenic | 25.0% |
| !!! | CTTTTCAATATCTGAAACTT+CGG | - | chr4_1:24525326-24525345 | None:intergenic | 25.0% |
| ! | GAAGTTAAGCAAATTCTATT+CGG | - | chr4_1:24525397-24525416 | None:intergenic | 25.0% |
| !! | GAATAGAATTTGCTTAACTT+CGG | + | chr4_1:24525396-24525415 | Msa0541130:intron | 25.0% |
| !! | GAAGATATTTTCTATTACCT+TGG | + | chr4_1:24525594-24525613 | Msa0541130:intron | 25.0% |
| ! | TTCAACAAATGATAACATGA+AGG | + | chr4_1:24525624-24525643 | Msa0541130:intron | 25.0% |
| ! | ACTCAATTTAATAGTTCAAG+AGG | + | chr4_1:24525729-24525748 | Msa0541130:intron | 25.0% |
| ! | CTCAATTTAATAGTTCAAGA+GGG | + | chr4_1:24525730-24525749 | Msa0541130:intron | 25.0% |
| ! | ACTTTCAAGCATAAAATATC+CGG | - | chr4_1:24525914-24525933 | None:intergenic | 25.0% |
| !!! | AAAAGCATTTGAGATTTTTC+AGG | + | chr4_1:24525948-24525967 | Msa0541130:intron | 25.0% |
| !! | TGACTTTGTGTTTTTCTAAA+AGG | - | chr4_1:24526137-24526156 | None:intergenic | 25.0% |
| !! | AAATTTTACCATCATATCCA+AGG | - | chr4_1:24526187-24526206 | None:intergenic | 25.0% |
| !! | TGGTAAAATTTGAGAAGTAT+TGG | + | chr4_1:24526196-24526215 | Msa0541130:CDS | 25.0% |
| !!! | GTATGATATATATTTTGAGG+AGG | + | chr4_1:24526644-24526663 | Msa0541130:CDS | 25.0% |
| ! | AGTTTGATGTACTTCTTTAT+TGG | + | chr4_1:24526700-24526719 | Msa0541130:CDS | 25.0% |
| !!! | ATGAGTTTTTTGGTTGATTT+CGG | - | chr4_1:24525182-24525201 | None:intergenic | 25.0% |
| !!! | CTTTTCAATATCTGAAACTT+CGG | - | chr4_1:24525326-24525345 | None:intergenic | 25.0% |
| ! | GAAGTTAAGCAAATTCTATT+CGG | - | chr4_1:24525397-24525416 | None:intergenic | 25.0% |
| !! | GAATAGAATTTGCTTAACTT+CGG | + | chr4_1:24525396-24525415 | Msa0541130:intron | 25.0% |
| !! | GAAGATATTTTCTATTACCT+TGG | + | chr4_1:24525594-24525613 | Msa0541130:intron | 25.0% |
| ! | TTCAACAAATGATAACATGA+AGG | + | chr4_1:24525624-24525643 | Msa0541130:intron | 25.0% |
| ! | ACTCAATTTAATAGTTCAAG+AGG | + | chr4_1:24525729-24525748 | Msa0541130:intron | 25.0% |
| ! | CTCAATTTAATAGTTCAAGA+GGG | + | chr4_1:24525730-24525749 | Msa0541130:intron | 25.0% |
| ! | ACTTTCAAGCATAAAATATC+CGG | - | chr4_1:24525914-24525933 | None:intergenic | 25.0% |
| !!! | AAAAGCATTTGAGATTTTTC+AGG | + | chr4_1:24525948-24525967 | Msa0541130:intron | 25.0% |
| !! | TGACTTTGTGTTTTTCTAAA+AGG | - | chr4_1:24526137-24526156 | None:intergenic | 25.0% |
| !! | AAATTTTACCATCATATCCA+AGG | - | chr4_1:24526187-24526206 | None:intergenic | 25.0% |
| !! | TGGTAAAATTTGAGAAGTAT+TGG | + | chr4_1:24526196-24526215 | Msa0541130:CDS | 25.0% |
| !!! | GTATGATATATATTTTGAGG+AGG | + | chr4_1:24526644-24526663 | Msa0541130:CDS | 25.0% |
| ! | AGTTTGATGTACTTCTTTAT+TGG | + | chr4_1:24526700-24526719 | Msa0541130:CDS | 25.0% |
| !!! | GTAAACTACGATGAGTTTTT+TGG | - | chr4_1:24525192-24525211 | None:intergenic | 30.0% |
| AACTCATCGTAGTTTACTTT+CGG | + | chr4_1:24525195-24525214 | Msa0541130:CDS | 30.0% | |
| CCATACTCAACAAAACTAAA+AGG | - | chr4_1:24525244-24525263 | None:intergenic | 30.0% | |
| !!! | CCTTTTAGTTTTGTTGAGTA+TGG | + | chr4_1:24525241-24525260 | Msa0541130:CDS | 30.0% |
| AATGAAGCTTAAGGATATCA+TGG | + | chr4_1:24525363-24525382 | Msa0541130:intron | 30.0% | |
| ! | CCAGTTTTCATCTACAAAAT+GGG | - | chr4_1:24525467-24525486 | None:intergenic | 30.0% |
| ! | TCCAGTTTTCATCTACAAAA+TGG | - | chr4_1:24525468-24525487 | None:intergenic | 30.0% |
| ! | TGTTTGATTGTCTAAAGCAA+TGG | + | chr4_1:24525560-24525579 | Msa0541130:intron | 30.0% |
| ! | GTTTGATTGTCTAAAGCAAT+GGG | + | chr4_1:24525561-24525580 | Msa0541130:intron | 30.0% |
| ! | TTTGATTGTCTAAAGCAATG+GGG | + | chr4_1:24525562-24525581 | Msa0541130:intron | 30.0% |
| ! | ATTTGTTGAAGCATTATCCA+AGG | - | chr4_1:24525614-24525633 | None:intergenic | 30.0% |
| ! | CAGAGTAATTTAATGGGTAA+TGG | + | chr4_1:24525673-24525692 | Msa0541130:intron | 30.0% |
| ! | TAAGATTAGATGTTTCTACG+AGG | + | chr4_1:24525881-24525900 | Msa0541130:intron | 30.0% |
| ! | GTATTTTATGCAAGTATGGA+AGG | + | chr4_1:24526104-24526123 | Msa0541130:intron | 30.0% |
| AAAAATTTATCCTTCAAGCG+TGG | - | chr4_1:24526264-24526283 | None:intergenic | 30.0% | |
| !! | GAAGTATTGCTATACTAAAC+TGG | + | chr4_1:24526284-24526303 | Msa0541130:CDS | 30.0% |
| CTCATATGATGATTGAGAAA+GGG | - | chr4_1:24526406-24526425 | None:intergenic | 30.0% | |
| ACTCATATGATGATTGAGAA+AGG | - | chr4_1:24526407-24526426 | None:intergenic | 30.0% | |
| TATCATACTCACTCATTTCA+GGG | - | chr4_1:24526632-24526651 | None:intergenic | 30.0% | |
| ATATCATACTCACTCATTTC+AGG | - | chr4_1:24526633-24526652 | None:intergenic | 30.0% | |
| TGATGTACTTCTTTATTGGA+AGG | + | chr4_1:24526704-24526723 | Msa0541130:CDS | 30.0% | |
| ! | GGCTTTTCAGAAAATATTTC+TGG | + | chr4_1:24526906-24526925 | Msa0541130:CDS | 30.0% |
| !!! | GTAAACTACGATGAGTTTTT+TGG | - | chr4_1:24525192-24525211 | None:intergenic | 30.0% |
| AACTCATCGTAGTTTACTTT+CGG | + | chr4_1:24525195-24525214 | Msa0541130:CDS | 30.0% | |
| CCATACTCAACAAAACTAAA+AGG | - | chr4_1:24525244-24525263 | None:intergenic | 30.0% | |
| !!! | CCTTTTAGTTTTGTTGAGTA+TGG | + | chr4_1:24525241-24525260 | Msa0541130:CDS | 30.0% |
| AATGAAGCTTAAGGATATCA+TGG | + | chr4_1:24525363-24525382 | Msa0541130:intron | 30.0% | |
| ! | CCAGTTTTCATCTACAAAAT+GGG | - | chr4_1:24525467-24525486 | None:intergenic | 30.0% |
| ! | TCCAGTTTTCATCTACAAAA+TGG | - | chr4_1:24525468-24525487 | None:intergenic | 30.0% |
| ! | TGTTTGATTGTCTAAAGCAA+TGG | + | chr4_1:24525560-24525579 | Msa0541130:intron | 30.0% |
| ! | GTTTGATTGTCTAAAGCAAT+GGG | + | chr4_1:24525561-24525580 | Msa0541130:intron | 30.0% |
| ! | TTTGATTGTCTAAAGCAATG+GGG | + | chr4_1:24525562-24525581 | Msa0541130:intron | 30.0% |
| ! | ATTTGTTGAAGCATTATCCA+AGG | - | chr4_1:24525614-24525633 | None:intergenic | 30.0% |
| ! | CAGAGTAATTTAATGGGTAA+TGG | + | chr4_1:24525673-24525692 | Msa0541130:intron | 30.0% |
| ! | TAAGATTAGATGTTTCTACG+AGG | + | chr4_1:24525881-24525900 | Msa0541130:intron | 30.0% |
| ! | GTATTTTATGCAAGTATGGA+AGG | + | chr4_1:24526104-24526123 | Msa0541130:intron | 30.0% |
| AAAAATTTATCCTTCAAGCG+TGG | - | chr4_1:24526264-24526283 | None:intergenic | 30.0% | |
| !! | GAAGTATTGCTATACTAAAC+TGG | + | chr4_1:24526284-24526303 | Msa0541130:CDS | 30.0% |
| CTCATATGATGATTGAGAAA+GGG | - | chr4_1:24526406-24526425 | None:intergenic | 30.0% | |
| ACTCATATGATGATTGAGAA+AGG | - | chr4_1:24526407-24526426 | None:intergenic | 30.0% | |
| TATCATACTCACTCATTTCA+GGG | - | chr4_1:24526632-24526651 | None:intergenic | 30.0% | |
| ATATCATACTCACTCATTTC+AGG | - | chr4_1:24526633-24526652 | None:intergenic | 30.0% | |
| TGATGTACTTCTTTATTGGA+AGG | + | chr4_1:24526704-24526723 | Msa0541130:CDS | 30.0% | |
| ! | GGCTTTTCAGAAAATATTTC+TGG | + | chr4_1:24526906-24526925 | Msa0541130:CDS | 30.0% |
| TTGATTTCGGTCATGCTAAA+GGG | - | chr4_1:24525169-24525188 | None:intergenic | 35.0% | |
| TCAAATATTTCACCCACTCT+CGG | - | chr4_1:24525273-24525292 | None:intergenic | 35.0% | |
| TTTGAATCCTTCTGCTGAAA+TGG | + | chr4_1:24525288-24525307 | Msa0541130:CDS | 35.0% | |
| TAGGGAAAGAATGAAGCTTA+AGG | + | chr4_1:24525354-24525373 | Msa0541130:intron | 35.0% | |
| TTTGCTTAACTTCGGATCTT+TGG | + | chr4_1:24525404-24525423 | Msa0541130:intron | 35.0% | |
| ! | GTTTTCATCTACAAAATGGG+CGG | - | chr4_1:24525464-24525483 | None:intergenic | 35.0% |
| ! | CCCATTTTGTAGATGAAAAC+TGG | + | chr4_1:24525464-24525483 | Msa0541130:intron | 35.0% |
| ACATTAAATTATCGGACGCA+AGG | + | chr4_1:24525803-24525822 | Msa0541130:intron | 35.0% | |
| TAATGATTGTGTCAGTGATG+CGG | + | chr4_1:24525837-24525856 | Msa0541130:intron | 35.0% | |
| ! | AAATGCTTTTCTGTACTGCA+AGG | - | chr4_1:24525938-24525957 | None:intergenic | 35.0% |
| !!! | AGCATTTGAGATTTTTCAGG+TGG | + | chr4_1:24525951-24525970 | Msa0541130:intron | 35.0% |
| TAAACATTGTCCTTCTGATG+AGG | + | chr4_1:24525987-24526006 | Msa0541130:CDS | 35.0% | |
| ! | GATATCACAAACTTGTTCTC+AGG | + | chr4_1:24526057-24526076 | Msa0541130:CDS | 35.0% |
| !! | ACTTGCAAGACTTTAAAGCA+TGG | + | chr4_1:24526583-24526602 | Msa0541130:CDS | 35.0% |
| GTATCTAGTGCTCTCTATTA+TGG | + | chr4_1:24526740-24526759 | Msa0541130:CDS | 35.0% | |
| !!! | GACGTGTTTTAACCAAGTAT+AGG | + | chr4_1:24526826-24526845 | Msa0541130:CDS | 35.0% |
| TTGATTTCGGTCATGCTAAA+GGG | - | chr4_1:24525169-24525188 | None:intergenic | 35.0% | |
| TCAAATATTTCACCCACTCT+CGG | - | chr4_1:24525273-24525292 | None:intergenic | 35.0% | |
| TTTGAATCCTTCTGCTGAAA+TGG | + | chr4_1:24525288-24525307 | Msa0541130:CDS | 35.0% | |
| TAGGGAAAGAATGAAGCTTA+AGG | + | chr4_1:24525354-24525373 | Msa0541130:intron | 35.0% | |
| TTTGCTTAACTTCGGATCTT+TGG | + | chr4_1:24525404-24525423 | Msa0541130:intron | 35.0% | |
| ! | GTTTTCATCTACAAAATGGG+CGG | - | chr4_1:24525464-24525483 | None:intergenic | 35.0% |
| ! | CCCATTTTGTAGATGAAAAC+TGG | + | chr4_1:24525464-24525483 | Msa0541130:intron | 35.0% |
| ACATTAAATTATCGGACGCA+AGG | + | chr4_1:24525803-24525822 | Msa0541130:intron | 35.0% | |
| TAATGATTGTGTCAGTGATG+CGG | + | chr4_1:24525837-24525856 | Msa0541130:intron | 35.0% | |
| ! | AAATGCTTTTCTGTACTGCA+AGG | - | chr4_1:24525938-24525957 | None:intergenic | 35.0% |
| !!! | AGCATTTGAGATTTTTCAGG+TGG | + | chr4_1:24525951-24525970 | Msa0541130:intron | 35.0% |
| TAAACATTGTCCTTCTGATG+AGG | + | chr4_1:24525987-24526006 | Msa0541130:CDS | 35.0% | |
| ! | GATATCACAAACTTGTTCTC+AGG | + | chr4_1:24526057-24526076 | Msa0541130:CDS | 35.0% |
| !! | ACTTGCAAGACTTTAAAGCA+TGG | + | chr4_1:24526583-24526602 | Msa0541130:CDS | 35.0% |
| GTATCTAGTGCTCTCTATTA+TGG | + | chr4_1:24526740-24526759 | Msa0541130:CDS | 35.0% | |
| !!! | GACGTGTTTTAACCAAGTAT+AGG | + | chr4_1:24526826-24526845 | Msa0541130:CDS | 35.0% |
| ! | GTTGATTTCGGTCATGCTAA+AGG | - | chr4_1:24525170-24525189 | None:intergenic | 40.0% |
| AGTATGGTAAAATCCGAGAG+TGG | + | chr4_1:24525257-24525276 | Msa0541130:CDS | 40.0% | |
| GTATGGTAAAATCCGAGAGT+GGG | + | chr4_1:24525258-24525277 | Msa0541130:CDS | 40.0% | |
| AGCTTAAGGATATCATGGCT+AGG | + | chr4_1:24525368-24525387 | Msa0541130:intron | 40.0% | |
| TGGACAACAACTACAAGTGA+AGG | + | chr4_1:24525424-24525443 | Msa0541130:intron | 40.0% | |
| TCGCGTGCAGAGTAATTTAA+TGG | + | chr4_1:24525666-24525685 | Msa0541130:intron | 40.0% | |
| CGCGTGCAGAGTAATTTAAT+GGG | + | chr4_1:24525667-24525686 | Msa0541130:intron | 40.0% | |
| AGTTCAAGAGGGTTTGAAAG+TGG | + | chr4_1:24525741-24525760 | Msa0541130:intron | 40.0% | |
| TAAATTATCGGACGCAAGGA+TGG | + | chr4_1:24525807-24525826 | Msa0541130:intron | 40.0% | |
| AATGATTGTGTCAGTGATGC+GGG | + | chr4_1:24525838-24525857 | Msa0541130:intron | 40.0% | |
| ! | GATTAGATGTTTCTACGAGG+TGG | + | chr4_1:24525884-24525903 | Msa0541130:intron | 40.0% |
| ATTGTCCTTCTGATGAGGAA+TGG | + | chr4_1:24525992-24526011 | Msa0541130:CDS | 40.0% | |
| TTGTCCTTCTGATGAGGAAT+GGG | + | chr4_1:24525993-24526012 | Msa0541130:CDS | 40.0% | |
| TTCTGATGAGGAATGGGAAA+GGG | + | chr4_1:24525999-24526018 | Msa0541130:CDS | 40.0% | |
| AGACATGTCCTTGGATATGA+TGG | + | chr4_1:24526176-24526195 | Msa0541130:CDS | 40.0% | |
| !! | TACAGTGTTGTACTAGCCTT+CGG | + | chr4_1:24526225-24526244 | Msa0541130:CDS | 40.0% |
| TATTCTTGATCCACGCTTGA+AGG | + | chr4_1:24526251-24526270 | Msa0541130:CDS | 40.0% | |
| TTAACTGCTGAAGCTAAGCT+TGG | + | chr4_1:24526312-24526331 | Msa0541130:CDS | 40.0% | |
| TAACTGCTGAAGCTAAGCTT+GGG | + | chr4_1:24526313-24526332 | Msa0541130:CDS | 40.0% | |
| !! | AGATGGGTTAGACAATGAGA+TGG | - | chr4_1:24526430-24526449 | None:intergenic | 40.0% |
| TAGTGCTCTCTATTATGGCA+CGG | + | chr4_1:24526745-24526764 | Msa0541130:CDS | 40.0% | |
| ATCAACATCTGAACGTGTTC+TGG | - | chr4_1:24526864-24526883 | None:intergenic | 40.0% | |
| TTCAGATGTTGATCTGCACT+CGG | + | chr4_1:24526871-24526890 | Msa0541130:CDS | 40.0% | |
| ! | GTTGATTTCGGTCATGCTAA+AGG | - | chr4_1:24525170-24525189 | None:intergenic | 40.0% |
| AGTATGGTAAAATCCGAGAG+TGG | + | chr4_1:24525257-24525276 | Msa0541130:CDS | 40.0% | |
| GTATGGTAAAATCCGAGAGT+GGG | + | chr4_1:24525258-24525277 | Msa0541130:CDS | 40.0% | |
| AGCTTAAGGATATCATGGCT+AGG | + | chr4_1:24525368-24525387 | Msa0541130:intron | 40.0% | |
| TGGACAACAACTACAAGTGA+AGG | + | chr4_1:24525424-24525443 | Msa0541130:intron | 40.0% | |
| TCGCGTGCAGAGTAATTTAA+TGG | + | chr4_1:24525666-24525685 | Msa0541130:intron | 40.0% | |
| CGCGTGCAGAGTAATTTAAT+GGG | + | chr4_1:24525667-24525686 | Msa0541130:intron | 40.0% | |
| AGTTCAAGAGGGTTTGAAAG+TGG | + | chr4_1:24525741-24525760 | Msa0541130:intron | 40.0% | |
| TAAATTATCGGACGCAAGGA+TGG | + | chr4_1:24525807-24525826 | Msa0541130:intron | 40.0% | |
| AATGATTGTGTCAGTGATGC+GGG | + | chr4_1:24525838-24525857 | Msa0541130:intron | 40.0% | |
| ! | GATTAGATGTTTCTACGAGG+TGG | + | chr4_1:24525884-24525903 | Msa0541130:intron | 40.0% |
| ATTGTCCTTCTGATGAGGAA+TGG | + | chr4_1:24525992-24526011 | Msa0541130:CDS | 40.0% | |
| TTGTCCTTCTGATGAGGAAT+GGG | + | chr4_1:24525993-24526012 | Msa0541130:CDS | 40.0% | |
| TTCTGATGAGGAATGGGAAA+GGG | + | chr4_1:24525999-24526018 | Msa0541130:CDS | 40.0% | |
| AGACATGTCCTTGGATATGA+TGG | + | chr4_1:24526176-24526195 | Msa0541130:CDS | 40.0% | |
| !! | TACAGTGTTGTACTAGCCTT+CGG | + | chr4_1:24526225-24526244 | Msa0541130:CDS | 40.0% |
| TATTCTTGATCCACGCTTGA+AGG | + | chr4_1:24526251-24526270 | Msa0541130:CDS | 40.0% | |
| TTAACTGCTGAAGCTAAGCT+TGG | + | chr4_1:24526312-24526331 | Msa0541130:CDS | 40.0% | |
| TAACTGCTGAAGCTAAGCTT+GGG | + | chr4_1:24526313-24526332 | Msa0541130:CDS | 40.0% | |
| !! | AGATGGGTTAGACAATGAGA+TGG | - | chr4_1:24526430-24526449 | None:intergenic | 40.0% |
| TAGTGCTCTCTATTATGGCA+CGG | + | chr4_1:24526745-24526764 | Msa0541130:CDS | 40.0% | |
| ATCAACATCTGAACGTGTTC+TGG | - | chr4_1:24526864-24526883 | None:intergenic | 40.0% | |
| TTCAGATGTTGATCTGCACT+CGG | + | chr4_1:24526871-24526890 | Msa0541130:CDS | 40.0% | |
| CTACAGACCATTTCAGCAGA+AGG | - | chr4_1:24525298-24525317 | None:intergenic | 45.0% | |
| CTTCTGCTGAAATGGTCTGT+AGG | + | chr4_1:24525296-24525315 | Msa0541130:intron | 45.0% | |
| AGAATGAAACCTCCACACAC+TGG | + | chr4_1:24525517-24525536 | Msa0541130:intron | 45.0% | |
| AATGCAATACCAGTGTGTGG+AGG | - | chr4_1:24525529-24525548 | None:intergenic | 45.0% | |
| TCCACACACTGGTATTGCAT+TGG | + | chr4_1:24525528-24525547 | Msa0541130:intron | 45.0% | |
| TCCAATGCAATACCAGTGTG+TGG | - | chr4_1:24525532-24525551 | None:intergenic | 45.0% | |
| ATGATTGTGTCAGTGATGCG+GGG | + | chr4_1:24525839-24525858 | Msa0541130:intron | 45.0% | |
| CTTTCCCATTCCTCATCAGA+AGG | - | chr4_1:24526000-24526019 | None:intergenic | 45.0% | |
| CTTCTGATGAGGAATGGGAA+AGG | + | chr4_1:24525998-24526017 | Msa0541130:CDS | 45.0% | |
| AGTGATTCGAGACATGTCCT+TGG | + | chr4_1:24526167-24526186 | Msa0541130:CDS | 45.0% | |
| TGGATCAAGAATAGCTCCGA+AGG | - | chr4_1:24526244-24526263 | None:intergenic | 45.0% | |
| TAACCCATCTAGATCCAGTC+AGG | + | chr4_1:24526440-24526459 | Msa0541130:intron | 45.0% | |
| AACCCATCTAGATCCAGTCA+GGG | + | chr4_1:24526441-24526460 | Msa0541130:intron | 45.0% | |
| AGTGCTCTCTATTATGGCAC+GGG | + | chr4_1:24526746-24526765 | Msa0541130:CDS | 45.0% | |
| TCAGAGTCGTCTTTCAGCAT+TGG | + | chr4_1:24526801-24526820 | Msa0541130:CDS | 45.0% | |
| AAGCGTGGAACTCCTATACT+TGG | - | chr4_1:24526841-24526860 | None:intergenic | 45.0% | |
| CTACAGACCATTTCAGCAGA+AGG | - | chr4_1:24525298-24525317 | None:intergenic | 45.0% | |
| CTTCTGCTGAAATGGTCTGT+AGG | + | chr4_1:24525296-24525315 | Msa0541130:intron | 45.0% | |
| AGAATGAAACCTCCACACAC+TGG | + | chr4_1:24525517-24525536 | Msa0541130:intron | 45.0% | |
| AATGCAATACCAGTGTGTGG+AGG | - | chr4_1:24525529-24525548 | None:intergenic | 45.0% | |
| TCCACACACTGGTATTGCAT+TGG | + | chr4_1:24525528-24525547 | Msa0541130:intron | 45.0% | |
| TCCAATGCAATACCAGTGTG+TGG | - | chr4_1:24525532-24525551 | None:intergenic | 45.0% | |
| ATGATTGTGTCAGTGATGCG+GGG | + | chr4_1:24525839-24525858 | Msa0541130:intron | 45.0% | |
| CTTTCCCATTCCTCATCAGA+AGG | - | chr4_1:24526000-24526019 | None:intergenic | 45.0% | |
| CTTCTGATGAGGAATGGGAA+AGG | + | chr4_1:24525998-24526017 | Msa0541130:CDS | 45.0% | |
| AGTGATTCGAGACATGTCCT+TGG | + | chr4_1:24526167-24526186 | Msa0541130:CDS | 45.0% | |
| TGGATCAAGAATAGCTCCGA+AGG | - | chr4_1:24526244-24526263 | None:intergenic | 45.0% | |
| TAACCCATCTAGATCCAGTC+AGG | + | chr4_1:24526440-24526459 | Msa0541130:intron | 45.0% | |
| AACCCATCTAGATCCAGTCA+GGG | + | chr4_1:24526441-24526460 | Msa0541130:intron | 45.0% | |
| AGTGCTCTCTATTATGGCAC+GGG | + | chr4_1:24526746-24526765 | Msa0541130:CDS | 45.0% | |
| TCAGAGTCGTCTTTCAGCAT+TGG | + | chr4_1:24526801-24526820 | Msa0541130:CDS | 45.0% | |
| AAGCGTGGAACTCCTATACT+TGG | - | chr4_1:24526841-24526860 | None:intergenic | 45.0% | |
| !!! | TAATATTGATTTAATATATT+AGG | + | chr4_1:24526560-24526579 | Msa0541130:intron | 5.0% |
| !!! | TAATATTGATTTAATATATT+AGG | + | chr4_1:24526560-24526579 | Msa0541130:intron | 5.0% |
| GTTTCTACGAGGTGGAACAC+CGG | + | chr4_1:24525892-24525911 | Msa0541130:intron | 50.0% | |
| ACCCATCTAGATCCAGTCAG+GGG | + | chr4_1:24526442-24526461 | Msa0541130:intron | 50.0% | |
| TCCCCTGACTGGATCTAGAT+GGG | - | chr4_1:24526446-24526465 | None:intergenic | 50.0% | |
| TTCCCCTGACTGGATCTAGA+TGG | - | chr4_1:24526447-24526466 | None:intergenic | 50.0% | |
| !! | CTTAGTCTTGTTCCCCTGAC+TGG | - | chr4_1:24526457-24526476 | None:intergenic | 50.0% |
| ! | GAGTCGTCTTTCAGCATTGG+TGG | + | chr4_1:24526804-24526823 | Msa0541130:CDS | 50.0% |
| TGTTGATCTGCACTCGGAGT+TGG | + | chr4_1:24526877-24526896 | Msa0541130:CDS | 50.0% | |
| GTTTCTACGAGGTGGAACAC+CGG | + | chr4_1:24525892-24525911 | Msa0541130:intron | 50.0% | |
| ACCCATCTAGATCCAGTCAG+GGG | + | chr4_1:24526442-24526461 | Msa0541130:intron | 50.0% | |
| TCCCCTGACTGGATCTAGAT+GGG | - | chr4_1:24526446-24526465 | None:intergenic | 50.0% | |
| TTCCCCTGACTGGATCTAGA+TGG | - | chr4_1:24526447-24526466 | None:intergenic | 50.0% | |
| !! | CTTAGTCTTGTTCCCCTGAC+TGG | - | chr4_1:24526457-24526476 | None:intergenic | 50.0% |
| ! | GAGTCGTCTTTCAGCATTGG+TGG | + | chr4_1:24526804-24526823 | Msa0541130:CDS | 50.0% |
| TGTTGATCTGCACTCGGAGT+TGG | + | chr4_1:24526877-24526896 | Msa0541130:CDS | 50.0% | |
| GCGGGGTTAAGTGTTAGCAC+TGG | + | chr4_1:24525856-24525875 | Msa0541130:intron | 55.0% | |
| TCTGATGCAACCGTGGTGAG+GGG | - | chr4_1:24526786-24526805 | None:intergenic | 55.0% | |
| CTCTGATGCAACCGTGGTGA+GGG | - | chr4_1:24526787-24526806 | None:intergenic | 55.0% | |
| ACTCTGATGCAACCGTGGTG+AGG | - | chr4_1:24526788-24526807 | None:intergenic | 55.0% | |
| AGACGACTCTGATGCAACCG+TGG | - | chr4_1:24526793-24526812 | None:intergenic | 55.0% | |
| !! | CTGAACGTGTTCTGGAAGCG+TGG | - | chr4_1:24526856-24526875 | None:intergenic | 55.0% |
| GCGGGGTTAAGTGTTAGCAC+TGG | + | chr4_1:24525856-24525875 | Msa0541130:intron | 55.0% | |
| TCTGATGCAACCGTGGTGAG+GGG | - | chr4_1:24526786-24526805 | None:intergenic | 55.0% | |
| CTCTGATGCAACCGTGGTGA+GGG | - | chr4_1:24526787-24526806 | None:intergenic | 55.0% | |
| ACTCTGATGCAACCGTGGTG+AGG | - | chr4_1:24526788-24526807 | None:intergenic | 55.0% | |
| AGACGACTCTGATGCAACCG+TGG | - | chr4_1:24526793-24526812 | None:intergenic | 55.0% | |
| !! | CTGAACGTGTTCTGGAAGCG+TGG | - | chr4_1:24526856-24526875 | None:intergenic | 55.0% |
| GCTGAGCATTCCCCTCACCA+CGG | + | chr4_1:24526773-24526792 | Msa0541130:CDS | 60.0% | |
| TGCACTCGGAGTTGGCTGCA+TGG | + | chr4_1:24526885-24526904 | Msa0541130:CDS | 60.0% | |
| GCTGAGCATTCCCCTCACCA+CGG | + | chr4_1:24526773-24526792 | Msa0541130:CDS | 60.0% | |
| TGCACTCGGAGTTGGCTGCA+TGG | + | chr4_1:24526885-24526904 | Msa0541130:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 24525156 | 24526953 | 24525156 | ID=Msa0541130;Name=Msa0541130 |
| chr4_1 | mRNA | 24525156 | 24526953 | 24525156 | ID=Msa0541130-mRNA-1;Parent=Msa0541130;Name=Msa0541130-mRNA-1;_AED=0.34;_eAED=0.34;_QI=19|0|0|0.25|0|0.25|4|0|301 |
| chr4_1 | exon | 24525156 | 24525309 | 24525156 | ID=Msa0541130-mRNA-1:exon:6681;Parent=Msa0541130-mRNA-1 |
| chr4_1 | exon | 24525970 | 24526116 | 24525970 | ID=Msa0541130-mRNA-1:exon:6682;Parent=Msa0541130-mRNA-1 |
| chr4_1 | exon | 24526126 | 24526374 | 24526126 | ID=Msa0541130-mRNA-1:exon:6683;Parent=Msa0541130-mRNA-1 |
| chr4_1 | exon | 24526582 | 24526953 | 24526582 | ID=Msa0541130-mRNA-1:exon:6684;Parent=Msa0541130-mRNA-1 |
| chr4_1 | five_prime_UTR | 24525156 | 24525174 | 24525156 | ID=Msa0541130-mRNA-1:five_prime_utr;Parent=Msa0541130-mRNA-1 |
| chr4_1 | CDS | 24525175 | 24525309 | 24525175 | ID=Msa0541130-mRNA-1:cds;Parent=Msa0541130-mRNA-1 |
| chr4_1 | CDS | 24525970 | 24526116 | 24525970 | ID=Msa0541130-mRNA-1:cds;Parent=Msa0541130-mRNA-1 |
| chr4_1 | CDS | 24526126 | 24526374 | 24526126 | ID=Msa0541130-mRNA-1:cds;Parent=Msa0541130-mRNA-1 |
| chr4_1 | CDS | 24526582 | 24526953 | 24526582 | ID=Msa0541130-mRNA-1:cds;Parent=Msa0541130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
