AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0686810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0686810 MtrunA17_Chr4g0036961 95.213 376 18 0 38 413 1 376 0.0 756
Msa0686810 MtrunA17_Chr4g0068121 83.511 376 62 0 38 413 1 376 0.0 677
Msa0686810 MtrunA17_Chr4g0068141 80.851 376 72 0 38 413 1 376 0.0 651
Msa0686810 MtrunA17_Chr3g0134571 43.127 371 199 7 43 409 16 378 7.50e-97 294
Msa0686810 MtrunA17_Chr3g0134551 42.933 375 195 9 43 409 27 390 7.88e-96 292
Msa0686810 MtrunA17_Chr3g0134561 42.204 372 202 8 43 409 27 390 2.50e-95 291
Msa0686810 MtrunA17_Chr3g0082001 42.667 375 196 9 43 409 27 390 3.21e-95 291
Msa0686810 MtrunA17_Chr1g0152811 41.622 370 206 6 43 409 63 425 1.02e-93 288
Msa0686810 MtrunA17_Chr1g0152831 41.253 383 214 7 28 407 47 421 1.00e-92 288
Msa0686810 MtrunA17_Chr3g0104611 36.269 386 224 12 35 409 3 377 4.38e-70 225
Msa0686810 MtrunA17_Chr1g0152791 40.816 196 115 1 214 409 13 207 6.98e-50 167
Msa0686810 MtrunA17_Chr1g0152801 38.710 124 70 4 85 208 11 128 1.52e-17 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0686810 AT4G24220.2 42.049 371 202 8 43 409 26 387 1.49e-95 291
Msa0686810 AT4G24220.1 42.049 371 202 8 43 409 27 388 1.68e-95 291
Msa0686810 AT5G58750.1 32.071 396 245 12 28 410 2 386 3.24e-59 198
Msa0686810 AT5G58750.2 32.552 384 235 12 40 410 6 378 8.20e-59 196

Find 124 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGCACGTAATAGAAATT+TGG 0.168674 4_4:+51438185 None:intergenic
AAGAAGTCACCCACCTCTTT+TGG 0.213578 4_4:-51438436 Msa0686810:CDS
CGTTTAAGAGTATCAGATTC+TGG 0.234355 4_4:-51437605 Msa0686810:CDS
GACTTGATTGTCGAGGAATA+TGG 0.263491 4_4:-51437756 Msa0686810:CDS
TTTCCTTCTTCCATCCTTGA+TGG 0.275110 4_4:-51438521 Msa0686810:CDS
TTCCGGTTTGGAGTGTTATA+TGG 0.277420 4_4:+51438306 None:intergenic
GCTGCCATATGTCGCCATTT+AGG 0.280720 4_4:-51438047 Msa0686810:CDS
ATGAACAAGAGTAAGGATTA+TGG 0.289410 4_4:-51437648 Msa0686810:CDS
CATCGATCCTCTATCATAAT+AGG 0.292341 4_4:-51438119 Msa0686810:CDS
AAAAGAGGTGGGTGACTTCT+TGG 0.296908 4_4:+51438438 None:intergenic
GGAAGCAATTTCCTGCAATT+TGG 0.303114 4_4:+51437722 None:intergenic
TGCGTGATAAGGGTGAGATT+TGG 0.330513 4_4:-51437779 Msa0686810:CDS
ATCAGGCTGCTTCAAGGCTT+TGG 0.337780 4_4:+51438601 None:intergenic
GCACTGGTGGTTGGAGTAAC+AGG 0.353312 4_4:-51438644 Msa0686810:CDS
CAAGCACGTAATAGAAATTT+GGG 0.353974 4_4:+51438186 None:intergenic
AAAGAAAAGGTAATCCTAAA+TGG 0.355473 4_4:+51438033 None:intergenic
GGAGGCCCATGGAAAGTTTA+CGG 0.363918 4_4:-51438572 Msa0686810:CDS
GCGTGATAAGGGTGAGATTT+GGG 0.371349 4_4:-51437778 Msa0686810:CDS
CTTCTTCATCACCTACAAAC+TGG 0.385026 4_4:+51438405 None:intergenic
CAAGGAAGAGTTTGATTTGG+TGG 0.392348 4_4:-51437808 Msa0686810:CDS
TGGGTCACGTTCCAGTTTGT+AGG 0.396862 4_4:-51438416 Msa0686810:CDS
TGGGTGACTTCTTGGGATAT+TGG 0.406438 4_4:+51438446 None:intergenic
ACCCATGTAATGTTTGGTTC+CGG 0.408112 4_4:+51438289 None:intergenic
AAGCAGCCTGATTGTCTTGG+AGG 0.408544 4_4:-51438590 Msa0686810:CDS
TCCCAAGTGTACCTGTTTCC+TGG 0.408987 4_4:+51438008 None:intergenic
TGTAATGTTTGGTTCCGGTT+TGG 0.409989 4_4:+51438294 None:intergenic
TGTTTCGTGGCATATAAGTT+TGG 0.415707 4_4:+51438241 None:intergenic
ACTTGATTGTCGAGGAATAT+GGG 0.422566 4_4:-51437755 Msa0686810:CDS
CTCGCCGCTCCGCCGACGGT+TGG 0.426749 4_4:-51438544 Msa0686810:CDS
CGTTACATCCTATGCACCTT+CGG 0.429287 4_4:-51438156 Msa0686810:CDS
TCCGGTTTGGAGTGTTATAT+GGG 0.429734 4_4:+51438307 None:intergenic
TGAAACTCAAACCGCAGAAC+TGG 0.435621 4_4:+51437684 None:intergenic
GACCGAACCGGATCATGAAC+TGG 0.436608 4_4:+51438266 None:intergenic
TGAACAAGAGTAAGGATTAT+GGG 0.445952 4_4:-51437647 Msa0686810:CDS
AACCGGAACCAAACATTACA+TGG 0.447203 4_4:-51438291 Msa0686810:CDS
TGACAAGGAAGAGTTTGATT+TGG 0.447305 4_4:-51437811 Msa0686810:CDS
CATGGGCCTCCAAGACAATC+AGG 0.450062 4_4:+51438584 None:intergenic
TTGAAGCAGCCTGATTGTCT+TGG 0.454331 4_4:-51438593 Msa0686810:CDS
AAGACAATCAGGCTGCTTCA+AGG 0.459742 4_4:+51438595 None:intergenic
AAAGAGGTGGGTGACTTCTT+GGG 0.459855 4_4:+51438439 None:intergenic
AACTGGCACCGTTGCTTCAA+AGG 0.459967 4_4:+51437701 None:intergenic
GCAGCTCGCCGCTCCGCCGA+CGG 0.460373 4_4:-51438548 Msa0686810:CDS
GGTGGAGTTAATGCGTGATA+AGG 0.462624 4_4:-51437790 Msa0686810:CDS
ATTACAGAACTTGGGGAAGA+AGG 0.466762 4_4:-51440970 Msa0686810:intron
AATATATATAATTAGTTGCA+AGG 0.470663 4_4:-51438776 Msa0686810:intron
GCTTCATAAGACCAAATTGC+AGG 0.471225 4_4:-51437733 Msa0686810:CDS
AGGAAAGTTGGCATCAAGAT+TGG 0.472700 4_4:-51440303 Msa0686810:intron
ATAAGTTTGGTGGACCGAAC+CGG 0.472714 4_4:+51438254 None:intergenic
ATTTCTGGATTACAGAACTT+GGG 0.474565 4_4:-51440978 Msa0686810:intron
CGTTTGTGCAATTAAACGCT+TGG 0.475175 4_4:+51437907 None:intergenic
GTTTAAGAGTATCAGATTCT+GGG 0.476243 4_4:-51437604 Msa0686810:CDS
TTCGTGGCATATAAGTTTGG+TGG 0.479076 4_4:+51438244 None:intergenic
AACTGGACCCATGTAATGTT+TGG 0.479645 4_4:+51438283 None:intergenic
GTTGGAGTAACAGGAATGGC+TGG 0.481819 4_4:-51438635 Msa0686810:CDS
CAAGCGTTTAATTGCACAAA+CGG 0.481885 4_4:-51437906 Msa0686810:CDS
TTACAGAACTTGGGGAAGAA+GGG 0.483404 4_4:-51440969 Msa0686810:intron
GAGTGTTATATGGGTGAGAG+AGG 0.483711 4_4:+51438316 None:intergenic
TAATCCTAAATGGCGACATA+TGG 0.484403 4_4:+51438043 None:intergenic
ATATGGGTGAGAGAGGAAGA+TGG 0.485484 4_4:+51438323 None:intergenic
GCTGCTTCAAGGCTTTGGCT+AGG 0.489750 4_4:+51438606 None:intergenic
CAGTACTTTGTGCTGTGGAC+AGG 0.494865 4_4:-51440932 Msa0686810:intron
ACGTAATAGAAATTTGGGTA+AGG 0.497259 4_4:+51438191 None:intergenic
GTGGAGTTAATGCGTGATAA+GGG 0.499998 4_4:-51437789 Msa0686810:CDS
CGTGGCATATTCTCATGAAA+AGG 0.500622 4_4:+51438218 None:intergenic
GCTGCACCGTAAACTTTCCA+TGG 0.501136 4_4:+51438566 None:intergenic
CATGGGTCCAGTTCATGATC+CGG 0.501165 4_4:-51438273 Msa0686810:CDS
AGGAAGATGGAGAAGATTTG+AGG 0.504270 4_4:+51438336 None:intergenic
ATCCAGGAAACAGGTACACT+TGG 0.505367 4_4:-51438010 Msa0686810:CDS
TGACATACCTATTATGATAG+AGG 0.505635 4_4:+51438112 None:intergenic
AGCATGTTGTGTGCACTCCT+TGG 0.507279 4_4:+51438089 None:intergenic
ACCCATATAACACTCCAAAC+CGG 0.508475 4_4:-51438308 Msa0686810:CDS
GTCCAGTTCATGATCCGGTT+CGG 0.509772 4_4:-51438268 Msa0686810:CDS
CTGTTTCCTGGATAAAGAAA+AGG 0.511918 4_4:+51438020 None:intergenic
AGCTGAGTTGACAGCGTCAA+AGG 0.516806 4_4:+51438490 None:intergenic
TTGGGATATTGGTAACAGCT+TGG 0.520967 4_4:+51438457 None:intergenic
ATCTAGTATGAACAAGAGTA+AGG 0.523341 4_4:-51437655 Msa0686810:CDS
TCTTCAAGATGAAGGAAAGT+TGG 0.525494 4_4:-51440315 Msa0686810:CDS
GCAATTCAATGTTGGTAGAC+GGG 0.530484 4_4:+51437552 None:intergenic
TGCAATTCAATGTTGGTAGA+CGG 0.532767 4_4:+51437551 None:intergenic
TCTCATGAAAAGGTGTTTCG+TGG 0.533034 4_4:+51438228 None:intergenic
AAACCATCAAGGATGGAAGA+AGG 0.533134 4_4:+51438518 None:intergenic
AATTGCTTCCTTTGAAGCAA+CGG 0.544770 4_4:-51437709 Msa0686810:CDS
AAATTTCTATTACGTGCTTG+AGG 0.545697 4_4:-51438183 Msa0686810:CDS
CATCTCAGTACTTTGTGCTG+TGG 0.548850 4_4:-51440937 Msa0686810:CDS
CGTAATAGAAATTTGGGTAA+GGG 0.551405 4_4:+51438192 None:intergenic
GGTGATGAAACCATCAAGGA+TGG 0.551500 4_4:+51438511 None:intergenic
AAAGTGTGTCTTCAAGATGA+AGG 0.553065 4_4:-51440323 Msa0686810:CDS
TTCTGTGATATGACGGATGT+AGG 0.555750 4_4:-51437981 Msa0686810:CDS
TGTACGAAATTCCGTAGCAC+TGG 0.559150 4_4:-51438660 Msa0686810:CDS
TCGACAATGCAATTCAATGT+TGG 0.560282 4_4:+51437544 None:intergenic
TACTCCAACCACCAGTGCTA+CGG 0.560800 4_4:+51438649 None:intergenic
AGATGGAGAAGATTTGAGGA+CGG 0.565001 4_4:+51438340 None:intergenic
TACAGAACTTGGGGAAGAAG+GGG 0.568426 4_4:-51440968 Msa0686810:intron
CTGATTGTCTTGGAGGCCCA+TGG 0.579424 4_4:-51438583 Msa0686810:CDS
GAAACCAACCGTCGGCGGAG+CGG 0.581110 4_4:+51438540 None:intergenic
TTTCTGGATTACAGAACTTG+GGG 0.593836 4_4:-51440977 Msa0686810:intron
ACTGGAACGTGACCCAAAAG+AGG 0.594156 4_4:+51438423 None:intergenic
TATGTGGATGTTGCTTAGTG+AGG 0.596746 4_4:-51437862 Msa0686810:CDS
GATTCTGGGTGGCTAAGCTG+AGG 0.597911 4_4:-51437590 Msa0686810:CDS
GTATGTAACCGAAGGTGCAT+AGG 0.598466 4_4:+51438148 None:intergenic
CAAAGGTGATGAAACCATCA+AGG 0.599116 4_4:+51438507 None:intergenic
ACGAAATTCCGTAGCACTGG+TGG 0.600681 4_4:-51438657 Msa0686810:CDS
GGTGAGAACATTAAGAAGCA+TGG 0.604108 4_4:+51438361 None:intergenic
GCTTGCAAAGCAACATGTGT+GGG 0.604170 4_4:-51437955 Msa0686810:CDS
AAGCAACGGTGCCAGTTCTG+CGG 0.604203 4_4:-51437695 Msa0686810:CDS
TCCAGGAAACAGGTACACTT+GGG 0.618534 4_4:-51438009 Msa0686810:CDS
TTGGAGTAACAGGAATGGCT+GGG 0.618664 4_4:-51438634 Msa0686810:CDS
GGAGCATTTCTGTGATATGA+CGG 0.620486 4_4:-51437988 Msa0686810:CDS
AATTCCGTAGCACTGGTGGT+TGG 0.620890 4_4:-51438653 Msa0686810:CDS
GATTTGGGACTTGATTGTCG+AGG 0.621595 4_4:-51437763 Msa0686810:CDS
AAATTTGGGTAAGGGAGTCG+TGG 0.629424 4_4:+51438200 None:intergenic
GTTTGTGGAGTTGAATGACA+AGG 0.631208 4_4:-51437826 Msa0686810:CDS
CTGCACCGTAAACTTTCCAT+GGG 0.632624 4_4:+51438567 None:intergenic
ATTCTGGGTGGCTAAGCTGA+GGG 0.633204 4_4:-51437589 Msa0686810:CDS
TGCTTGCAAAGCAACATGTG+TGG 0.638014 4_4:-51437956 Msa0686810:CDS
TGTATTGAGTATGTAACCGA+AGG 0.639133 4_4:+51438140 None:intergenic
GGAACGTGACCCAAAAGAGG+TGG 0.641679 4_4:+51438426 None:intergenic
ACCGGAACCAAACATTACAT+GGG 0.645400 4_4:-51438290 Msa0686810:CDS
AGAAGGAAACCAACCGTCGG+CGG 0.647598 4_4:+51438535 None:intergenic
TCATAATAGGTATGTCACCA+AGG 0.670293 4_4:-51438106 Msa0686810:CDS
GAACGTGACCCAAAAGAGGT+GGG 0.673571 4_4:+51438427 None:intergenic
TAAGAGTATCAGATTCTGGG+TGG 0.693537 4_4:-51437601 Msa0686810:CDS
GGTGGTTGGAGTAACAGGAA+TGG 0.704306 4_4:-51438639 Msa0686810:CDS
GGAAGAAGGAAACCAACCGT+CGG 0.707712 4_4:+51438532 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGATTTTTCTTAAATTTT+TGG + chr4_4:51440308-51440327 None:intergenic 10.0%
!! ATATATTAAAAAAAACAAAG+TGG + chr4_4:51440891-51440910 None:intergenic 10.0%
!!! AATATTAGTAGTTGATAAAT+AGG - chr4_4:51438435-51438454 Msa0686810:CDS 15.0%
!!! CTAAATTTTTTTAACAACAT+CGG + chr4_4:51439840-51439859 None:intergenic 15.0%
!! GAAAACTAAAATAAACATAA+GGG + chr4_4:51440114-51440133 None:intergenic 15.0%
!! TGAAAACTAAAATAAACATA+AGG + chr4_4:51440113-51440132 None:intergenic 15.0%
!! GAAAACTAAAATAAACATAA+GGG + chr4_4:51440114-51440133 None:intergenic 15.0%
!! TGAAAACTAAAATAAACATA+AGG + chr4_4:51440113-51440132 None:intergenic 15.0%
!! GAAAACTAAAATAAACATAA+GGG + chr4_4:51440114-51440133 None:intergenic 15.0%
!! TGAAAACTAAAATAAACATA+AGG + chr4_4:51440113-51440132 None:intergenic 15.0%
!! GAAAACTAAAATAAACATAA+GGG + chr4_4:51440114-51440133 None:intergenic 15.0%
!! TGAAAACTAAAATAAACATA+AGG + chr4_4:51440113-51440132 None:intergenic 15.0%
!! TGAAAACTAAAATAAACATA+AGG - chr4_4:51440113-51440132 Msa0686810:intron 15.0%
!! GAAAACTAAAATAAACATAA+GGG - chr4_4:51440114-51440133 Msa0686810:intron 15.0%
!! TGAAAACTAAAATAAACATA+AGG - chr4_4:51440113-51440132 Msa0686810:intron 15.0%
!! GAAAACTAAAATAAACATAA+GGG - chr4_4:51440114-51440133 Msa0686810:intron 15.0%
!!! TATATTATGTCTGAAATAAA+TGG - chr4_4:51440658-51440677 Msa0686810:intron 15.0%
!!! ATATTATGTCTGAAATAAAT+GGG - chr4_4:51440659-51440678 Msa0686810:intron 15.0%
!!! TAAATCGTAGTATTTTATAT+CGG - chr4_4:51440693-51440712 Msa0686810:intron 15.0%
!! AATATATATAATTAGTTGCA+AGG - chr4_4:51440904-51440923 Msa0686810:intron 15.0%
!! CATAATGCAAAAACAAATAA+GGG + chr4_4:51437671-51437690 None:intergenic 20.0%
!! ACATAATGCAAAAACAAATA+AGG + chr4_4:51437672-51437691 None:intergenic 20.0%
!!! TAACAGATCTTTATTTAACA+GGG - chr4_4:51438212-51438231 Msa0686810:CDS 20.0%
!! CAACTTATATATTATTCATC+CGG + chr4_4:51438257-51438276 None:intergenic 20.0%
!!! ATGAATAATATATAAGTTGG+TGG - chr4_4:51438258-51438277 Msa0686810:CDS 20.0%
!! AGTTCACAAATTTATATTTC+TGG - chr4_4:51438687-51438706 Msa0686810:intron 20.0%
!! TATATTATACAAAACGACAT+TGG + chr4_4:51438781-51438800 None:intergenic 20.0%
!! AAACAATAAAATTGGTTATG+TGG - chr4_4:51438814-51438833 Msa0686810:intron 20.0%
!! TAAAAGAAAGAAAAAATTGC+CGG + chr4_4:51438843-51438862 None:intergenic 20.0%
!!! CTATTTTTCTCATTATACAA+TGG + chr4_4:51439413-51439432 None:intergenic 20.0%
!!! AAACACTTTTTGATATTAGA+CGG + chr4_4:51439591-51439610 None:intergenic 20.0%
!!! TCTAATATCAAAAAGTGTTT+CGG - chr4_4:51439591-51439610 Msa0686810:intron 20.0%
!!! TTTTTGTTGTTGTTTTCAAT+AGG + chr4_4:51439642-51439661 None:intergenic 20.0%
!! ATATTCTCATATGTATGAAT+GGG - chr4_4:51439790-51439809 Msa0686810:intron 20.0%
!! CGATGTTGTTAAAAAAATTT+AGG - chr4_4:51439838-51439857 Msa0686810:intron 20.0%
!!! GTTTATTTTAGTTTTCAAGT+TGG - chr4_4:51439886-51439905 Msa0686810:intron 20.0%
!! TTGAAACTTTCAAAACATAA+GGG + chr4_4:51439913-51439932 None:intergenic 20.0%
!! GAAAACTAAAATAAACGTAT+GGG + chr4_4:51439942-51439961 None:intergenic 20.0%
!! TGAAAACTAAAATAAACGTA+TGG + chr4_4:51439943-51439962 None:intergenic 20.0%
!!! GTTTATTTTAGTTTTCAAGT+TGG - chr4_4:51439886-51439905 Msa0686810:intron 20.0%
!!! GTTTATTTTAGTTTTCAAGT+TGG - chr4_4:51439886-51439905 Msa0686810:intron 20.0%
!!! GTTTATTTTAGTTTTCAAGT+TGG - chr4_4:51439886-51439905 Msa0686810:intron 20.0%
!!! GTTTATTTTAGTTTTCAAGT+TGG - chr4_4:51439886-51439905 Msa0686810:intron 20.0%
!!! GTTTATTTTAGTTTTCAAGT+CGG + chr4_4:51439886-51439905 None:intergenic 20.0%
!!! GTTTATTTTAGTTTTCAAGT+TGG + chr4_4:51439886-51439905 None:intergenic 20.0%
!!! TTGAAAACTTTTAAAACGTA+AGG - chr4_4:51440203-51440222 Msa0686810:intron 20.0%
!!! TGAAAACTTTTAAAACGTAA+GGG - chr4_4:51440204-51440223 Msa0686810:intron 20.0%
!!! GTTTATTTTAGTTTTCAAGT+TGG + chr4_4:51439886-51439905 None:intergenic 20.0%
!!! ATCAATAGTAAATTTTGTCT+TGG - chr4_4:51440322-51440341 Msa0686810:CDS 20.0%
!!! GTTTTTAGCATTCTTTTAAT+TGG + chr4_4:51440486-51440505 None:intergenic 20.0%
!! ATTAAAAAAAACAAAGTGGA+TGG + chr4_4:51440887-51440906 None:intergenic 20.0%
! TTAGTACAAAGAAAGAACTT+CGG - chr4_4:51437622-51437641 Msa0686810:CDS 25.0%
!! TCATACTTATATAAAGCATC+TGG + chr4_4:51437931-51437950 None:intergenic 25.0%
! TATAAGTATGAGTTAACAAG+TGG - chr4_4:51437940-51437959 Msa0686810:CDS 25.0%
! TTGGAGAAATTGAAATTTGA+AGG - chr4_4:51437993-51438012 Msa0686810:CDS 25.0%
!! CTAACAGATCTTTATTTAAC+AGG - chr4_4:51438211-51438230 Msa0686810:CDS 25.0%
!! AACAGATCTTTATTTAACAG+GGG - chr4_4:51438213-51438232 Msa0686810:CDS 25.0%
! CGGATGAATAATATATAAGT+TGG - chr4_4:51438255-51438274 Msa0686810:CDS 25.0%
! TATCAACTACTAATATTCCA+TGG + chr4_4:51438432-51438451 None:intergenic 25.0%
!! AATTAAGTTTCATGGTGTTT+TGG - chr4_4:51438532-51438551 Msa0686810:CDS 25.0%
!!! TAATGAGATGATGTTTTAAG+TGG - chr4_4:51438648-51438667 Msa0686810:CDS 25.0%
! GTGAGTGAAAACAATAAAAT+TGG - chr4_4:51438806-51438825 Msa0686810:intron 25.0%
!! GTCTGGTTTCTTAATATATA+TGG - chr4_4:51439282-51439301 Msa0686810:intron 25.0%
!! TCATTAAGCAACTTCTTTTA+GGG + chr4_4:51439316-51439335 None:intergenic 25.0%
!! TTCATTAAGCAACTTCTTTT+AGG + chr4_4:51439317-51439336 None:intergenic 25.0%
! TTCTCATTATACAATGGAAA+AGG + chr4_4:51439407-51439426 None:intergenic 25.0%
! TTCACCACTATTTATTTGTA+AGG + chr4_4:51439442-51439461 None:intergenic 25.0%
! TCATTTGAATTTACTGTGAT+TGG - chr4_4:51439682-51439701 Msa0686810:intron 25.0%
!!! TGTGAACAATTTTTTGCAAT+AGG - chr4_4:51439761-51439780 Msa0686810:intron 25.0%
!!! GTGAACAATTTTTTGCAATA+GGG - chr4_4:51439762-51439781 Msa0686810:intron 25.0%
! CATATTCTCATATGTATGAA+TGG - chr4_4:51439789-51439808 Msa0686810:intron 25.0%
! CTTGAAACTTTCAAAACATA+AGG + chr4_4:51439914-51439933 None:intergenic 25.0%
!!! ATGTTTTGAAAGTTTCAAGT+TGG - chr4_4:51439915-51439934 Msa0686810:intron 25.0%
! TTGAAACTTTCAAAACGTAA+GGG + chr4_4:51440174-51440193 None:intergenic 25.0%
! TTGAAACTTTCAAAACGTAA+GGG - chr4_4:51440174-51440193 Msa0686810:intron 25.0%
!!! CGTTTTAAAAGTTTTCAAGT+TGG + chr4_4:51440201-51440220 None:intergenic 25.0%
! TTGAAACTTTCAAAACGTAA+GGG - chr4_4:51440174-51440193 Msa0686810:intron 25.0%
!! AGTAAATTTTGTCTTGGAAA+TGG - chr4_4:51440328-51440347 Msa0686810:intron 25.0%
! ACAATTCACTGATACAAAAA+TGG + chr4_4:51440412-51440431 None:intergenic 25.0%
! CCAATGCTATAACTATAATT+GGG + chr4_4:51440508-51440527 None:intergenic 25.0%
! TCCAATGCTATAACTATAAT+TGG + chr4_4:51440509-51440528 None:intergenic 25.0%
! AAAGAAAAGGTAATCCTAAA+TGG + chr4_4:51441650-51441669 None:intergenic 25.0%
AACAAAAGCCTTTCCATATA+AGG + chr4_4:51437730-51437749 None:intergenic 30.0%
!! AGAGTTCTTGTTAGTTTGTA+TGG - chr4_4:51437904-51437923 Msa0686810:CDS 30.0%
TGGAAGATCTTGTCATAATT+TGG + chr4_4:51437968-51437987 None:intergenic 30.0%
TTTCAATTTCTCCAATCTAC+TGG + chr4_4:51437988-51438007 None:intergenic 30.0%
!! AGTCTCAACTTTTTAGTACA+GGG + chr4_4:51438057-51438076 None:intergenic 30.0%
!! TAGTCTCAACTTTTTAGTAC+AGG + chr4_4:51438058-51438077 None:intergenic 30.0%
ACTCTGGTGTAATTACTTTA+GGG - chr4_4:51438142-51438161 Msa0686810:CDS 30.0%
! TTGCTTCTCATCCTTTAAAA+TGG - chr4_4:51438187-51438206 Msa0686810:CDS 30.0%
! GATCTGTTAGACCATTTTAA+AGG + chr4_4:51438201-51438220 None:intergenic 30.0%
! ACAGATCTTTATTTAACAGG+GGG - chr4_4:51438214-51438233 Msa0686810:CDS 30.0%
ATATATTATTCATCCGGCTT+TGG + chr4_4:51438251-51438270 None:intergenic 30.0%
! GATTTTCAAAAGTTACTCCA+AGG + chr4_4:51438356-51438375 None:intergenic 30.0%
TCCTATGCAATTAAGTTTCA+TGG - chr4_4:51438524-51438543 Msa0686810:CDS 30.0%
ACCATGAAACTTAATTGCAT+AGG + chr4_4:51438528-51438547 None:intergenic 30.0%
ATGAACTAGTTAAACTAGCA+TGG - chr4_4:51438561-51438580 Msa0686810:CDS 30.0%
!! TATTTCTGGATTACAGAACT+TGG - chr4_4:51438701-51438720 Msa0686810:intron 30.0%
! ATTTCTGGATTACAGAACTT+GGG - chr4_4:51438702-51438721 Msa0686810:intron 30.0%
! TTATGTCTTTAGCATTTTGC+TGG - chr4_4:51438896-51438915 Msa0686810:intron 30.0%
TTAGCGAAATCATTTCATGT+CGG + chr4_4:51439128-51439147 None:intergenic 30.0%
ACAAATAAATAGTGGTGAAG+TGG - chr4_4:51439443-51439462 Msa0686810:intron 30.0%
!! TATCAAAAAGTGTTTCGGAT+AGG - chr4_4:51439596-51439615 Msa0686810:intron 30.0%
! TCGGATAGGATAATTTTAAG+TGG - chr4_4:51439610-51439629 Msa0686810:intron 30.0%
TGAATTTACTGTGATTGGAT+AGG - chr4_4:51439687-51439706 Msa0686810:intron 30.0%
TTTAGGCTTAATTGCATGTT+TGG - chr4_4:51439855-51439874 Msa0686810:intron 30.0%
CTTGAAACTTTCAAAACGTA+AGG + chr4_4:51440173-51440192 None:intergenic 30.0%
!!! ACGTTTTGAAAGTTTCAAGT+TGG + chr4_4:51439975-51439994 None:intergenic 30.0%
CTTGAAACTTTCAAAACGTA+AGG - chr4_4:51440173-51440192 Msa0686810:intron 30.0%
!!! ACGTTTTGAAAGTTTCAAGT+TGG + chr4_4:51439975-51439994 None:intergenic 30.0%
CTTGAAACTTTCAAAACGTA+AGG - chr4_4:51440173-51440192 Msa0686810:intron 30.0%
!!! TTTTGGCTTAATTGCATGTT+TGG + chr4_4:51440291-51440310 None:intergenic 30.0%
CCCAATTATAGTTATAGCAT+TGG - chr4_4:51440505-51440524 Msa0686810:intron 30.0%
! TATGTCTGAAATAAATGGGT+CGG - chr4_4:51440663-51440682 Msa0686810:intron 30.0%
TTTAATCCTTTATCACCGAT+TGG + chr4_4:51440777-51440796 None:intergenic 30.0%
TGGATATACTAATGGAATCT+GGG + chr4_4:51440867-51440886 None:intergenic 30.0%
ATGGATATACTAATGGAATC+TGG + chr4_4:51440868-51440887 None:intergenic 30.0%
AAAGTGGATGGATATACTAA+TGG + chr4_4:51440875-51440894 None:intergenic 30.0%
!! AAAAGCATTAGTGTATTGAC+TGG + chr4_4:51440945-51440964 None:intergenic 30.0%
AATGGAGAAAAACTTAGTAG+CGG + chr4_4:51440981-51441000 None:intergenic 30.0%
TCATCACTTCAGTGTTATAA+TGG + chr4_4:51440999-51441018 None:intergenic 30.0%
!!! AAGAAGCATGGTTTTGTTAA+CGG + chr4_4:51441310-51441329 None:intergenic 30.0%
CGTAATAGAAATTTGGGTAA+GGG + chr4_4:51441491-51441510 None:intergenic 30.0%
ACGTAATAGAAATTTGGGTA+AGG + chr4_4:51441492-51441511 None:intergenic 30.0%
CAAGCACGTAATAGAAATTT+GGG + chr4_4:51441497-51441516 None:intergenic 30.0%
TCAAGCACGTAATAGAAATT+TGG + chr4_4:51441498-51441517 None:intergenic 30.0%
AAATTTCTATTACGTGCTTG+AGG - chr4_4:51441497-51441516 Msa0686810:intron 30.0%
TGACATACCTATTATGATAG+AGG + chr4_4:51441571-51441590 None:intergenic 30.0%
! GGTTTTTGATGTTAAGTTTG+TGG - chr4_4:51441839-51441858 Msa0686810:intron 30.0%
ATCTAGTATGAACAAGAGTA+AGG - chr4_4:51442025-51442044 Msa0686810:intron 30.0%
ATGAACAAGAGTAAGGATTA+TGG - chr4_4:51442032-51442051 Msa0686810:intron 30.0%
TGAACAAGAGTAAGGATTAT+GGG - chr4_4:51442033-51442052 Msa0686810:intron 30.0%
!! GTTTAAGAGTATCAGATTCT+GGG - chr4_4:51442076-51442095 Msa0686810:intron 30.0%
TTAAAATCCGGAATGAGCAA+GGG + chr4_4:51437844-51437863 None:intergenic 35.0%
! TTTAAAATCCGGAATGAGCA+AGG + chr4_4:51437845-51437864 None:intergenic 35.0%
! TTGCTCATTCCGGATTTTAA+AGG - chr4_4:51437844-51437863 Msa0686810:CDS 35.0%
! TGCTCATTCCGGATTTTAAA+GGG - chr4_4:51437845-51437864 Msa0686810:CDS 35.0%
!! ACTAGACTCCCTTTAAAATC+CGG + chr4_4:51437856-51437875 None:intergenic 35.0%
!! TCTCAACTTTTTAGTACAGG+GGG + chr4_4:51438055-51438074 None:intergenic 35.0%
!! GTCTCAACTTTTTAGTACAG+GGG + chr4_4:51438056-51438075 None:intergenic 35.0%
AGAGTCAATCACAATTGCTT+TGG + chr4_4:51438127-51438146 None:intergenic 35.0%
! AAAGCAATTGTGATTGACTC+TGG - chr4_4:51438126-51438145 Msa0686810:CDS 35.0%
GACTCTGGTGTAATTACTTT+AGG - chr4_4:51438141-51438160 Msa0686810:CDS 35.0%
! CAGATCTTTATTTAACAGGG+GGG - chr4_4:51438215-51438234 Msa0686810:CDS 35.0%
ATTGGCAGGATATATTACCA+TGG + chr4_4:51438304-51438323 None:intergenic 35.0%
!! TTTTGATGGCTATTCTACCA+TGG - chr4_4:51438412-51438431 Msa0686810:CDS 35.0%
TTTCTGGATTACAGAACTTG+GGG - chr4_4:51438703-51438722 Msa0686810:intron 35.0%
AAAATTGGTTATGTGGTTGC+CGG - chr4_4:51438821-51438840 Msa0686810:intron 35.0%
! TTTAGCATTTTGCTGGAGAA+GGG - chr4_4:51438903-51438922 Msa0686810:intron 35.0%
ATTAATCATGCCAAGCCTAA+AGG + chr4_4:51439171-51439190 None:intergenic 35.0%
! ATTTTGTCTACATCGGTCAA+TGG + chr4_4:51439236-51439255 None:intergenic 35.0%
! GCAACAGATTTTGTCTACAT+CGG + chr4_4:51439243-51439262 None:intergenic 35.0%
AAAGTGTGTCTTCAAGATGA+AGG - chr4_4:51439357-51439376 Msa0686810:intron 35.0%
TCTTCAAGATGAAGGAAAGT+TGG - chr4_4:51439365-51439384 Msa0686810:intron 35.0%
ACTATTTATTTGTAAGGCGC+TGG + chr4_4:51439436-51439455 None:intergenic 35.0%
AGCGCCTTACAAATAAATAG+TGG - chr4_4:51439435-51439454 Msa0686810:intron 35.0%
TGTGAATTGTAGCAGTGTAT+TGG - chr4_4:51440429-51440448 Msa0686810:intron 35.0%
! AGGCGTAGTTAGATGTTTTA+TGG - chr4_4:51440610-51440629 Msa0686810:intron 35.0%
ACCAAAGATCAAATGCCAAT+CGG - chr4_4:51440721-51440740 Msa0686810:intron 35.0%
TGTTTCGTGGCATATAAGTT+TGG + chr4_4:51441442-51441461 None:intergenic 35.0%
TGTATTGAGTATGTAACCGA+AGG + chr4_4:51441543-51441562 None:intergenic 35.0%
CATCGATCCTCTATCATAAT+AGG - chr4_4:51441561-51441580 Msa0686810:intron 35.0%
TCATAATAGGTATGTCACCA+AGG - chr4_4:51441574-51441593 Msa0686810:intron 35.0%
TAATCCTAAATGGCGACATA+TGG + chr4_4:51441640-51441659 None:intergenic 35.0%
! GGATTACCTTTTCTTTATCC+AGG - chr4_4:51441654-51441673 Msa0686810:intron 35.0%
CTGTTTCCTGGATAAAGAAA+AGG + chr4_4:51441663-51441682 None:intergenic 35.0%
! CTTTTCTTTATCCAGGAAAC+AGG - chr4_4:51441661-51441680 Msa0686810:intron 35.0%
CAAGCGTTTAATTGCACAAA+CGG - chr4_4:51441774-51441793 Msa0686810:intron 35.0%
!! TTTTCACTTGGAAGAGTATG+TGG - chr4_4:51441802-51441821 Msa0686810:intron 35.0%
TGACAAGGAAGAGTTTGATT+TGG - chr4_4:51441869-51441888 Msa0686810:intron 35.0%
ACTTGATTGTCGAGGAATAT+GGG - chr4_4:51441925-51441944 Msa0686810:intron 35.0%
!! AATTGCTTCCTTTGAAGCAA+CGG - chr4_4:51441971-51441990 Msa0686810:intron 35.0%
!! CGTTTAAGAGTATCAGATTC+TGG - chr4_4:51442075-51442094 Msa0686810:intron 35.0%
TGACTCTGCCTTATATGGAA+AGG - chr4_4:51437719-51437738 Msa0686810:CDS 40.0%
AATGTTACCCTTGCTCATTC+CGG - chr4_4:51437834-51437853 Msa0686810:CDS 40.0%
GACAAGATCTTCCAGTAGAT+TGG - chr4_4:51437974-51437993 Msa0686810:CDS 40.0%
!! CTCAACTTTTTAGTACAGGG+GGG + chr4_4:51438054-51438073 None:intergenic 40.0%
TGCAGCTGGTAACAAGTTAT+TGG + chr4_4:51438322-51438341 None:intergenic 40.0%
ATTACAGAACTTGGGGAAGA+AGG - chr4_4:51438710-51438729 Msa0686810:intron 40.0%
TTACAGAACTTGGGGAAGAA+GGG - chr4_4:51438711-51438730 Msa0686810:intron 40.0%
! CTTTAGCATTTTGCTGGAGA+AGG - chr4_4:51438902-51438921 Msa0686810:intron 40.0%
TAGAGAACAACAGTTCCTTC+CGG + chr4_4:51438944-51438963 None:intergenic 40.0%
TAACTGAAGATTGTCTCTGC+TGG - chr4_4:51438962-51438981 Msa0686810:intron 40.0%
TTGCTACCGTTAAAGTGAGA+TGG - chr4_4:51439070-51439089 Msa0686810:intron 40.0%
TGCTACCGTTAAAGTGAGAT+GGG - chr4_4:51439071-51439090 Msa0686810:intron 40.0%
TGCTTCCCATCTCACTTTAA+CGG + chr4_4:51439079-51439098 None:intergenic 40.0%
! GGTTTCTCTAAGAGCAAACA+AGG + chr4_4:51439107-51439126 None:intergenic 40.0%
AAGCCTAAAGGTTCAACATG+AGG + chr4_4:51439159-51439178 None:intergenic 40.0%
TCATGTTGAACCTTTAGGCT+TGG - chr4_4:51439158-51439177 Msa0686810:intron 40.0%
AGGAAAGTTGGCATCAAGAT+TGG - chr4_4:51439377-51439396 Msa0686810:intron 40.0%
TGAAAGACAAAGACTTGCGA+TGG - chr4_4:51439509-51439528 Msa0686810:intron 40.0%
TGATTGGATAGGTTCCATTG+AGG - chr4_4:51439698-51439717 Msa0686810:intron 40.0%
CTAACATTCCTAGACCTCAA+TGG + chr4_4:51439715-51439734 None:intergenic 40.0%
CATTGAGGTCTAGGAATGTT+AGG - chr4_4:51439713-51439732 Msa0686810:intron 40.0%
AACAACATCGGAGTTGAACT+AGG + chr4_4:51439828-51439847 None:intergenic 40.0%
!!! CAAGTTGGTCCCTTATGTTT+TGG - chr4_4:51439901-51439920 Msa0686810:intron 40.0%
CAAGTCGGTCCAAAACATAA+GGG + chr4_4:51440095-51440114 None:intergenic 40.0%
TCAAGTCGGTCCAAAACATA+AGG + chr4_4:51440096-51440115 None:intergenic 40.0%
TTCTTTCTGTGAGAGAACCA+CGG - chr4_4:51440543-51440562 Msa0686810:intron 40.0%
TCTAACTACGCCTTAACATG+CGG + chr4_4:51440603-51440622 None:intergenic 40.0%
ACCGATTGGCATTTGATCTT+TGG + chr4_4:51440725-51440744 None:intergenic 40.0%
! ATCAAATGCCAATCGGTGTT+AGG - chr4_4:51440728-51440747 Msa0686810:intron 40.0%
TGACAATACCTAACACCGAT+TGG + chr4_4:51440739-51440758 None:intergenic 40.0%
! CTTTATCACCGATTGGCAAT+TGG + chr4_4:51440770-51440789 None:intergenic 40.0%
CAATTGCCAATCGGTGATAA+AGG - chr4_4:51440768-51440787 Msa0686810:intron 40.0%
TTTCCTTCTTCCATCCTTGA+TGG - chr4_4:51441159-51441178 Msa0686810:intron 40.0%
AAACCATCAAGGATGGAAGA+AGG + chr4_4:51441165-51441184 None:intergenic 40.0%
CAAAGGTGATGAAACCATCA+AGG + chr4_4:51441176-51441195 None:intergenic 40.0%
! TTGGGATATTGGTAACAGCT+TGG + chr4_4:51441226-51441245 None:intergenic 40.0%
CTTCTTCATCACCTACAAAC+TGG + chr4_4:51441278-51441297 None:intergenic 40.0%
GGTGAGAACATTAAGAAGCA+TGG + chr4_4:51441322-51441341 None:intergenic 40.0%
AGATGGAGAAGATTTGAGGA+CGG + chr4_4:51441343-51441362 None:intergenic 40.0%
AGGAAGATGGAGAAGATTTG+AGG + chr4_4:51441347-51441366 None:intergenic 40.0%
ACCCATATAACACTCCAAAC+CGG - chr4_4:51441372-51441391 Msa0686810:intron 40.0%
!! TCCGGTTTGGAGTGTTATAT+GGG + chr4_4:51441376-51441395 None:intergenic 40.0%
!! TTCCGGTTTGGAGTGTTATA+TGG + chr4_4:51441377-51441396 None:intergenic 40.0%
! TGTAATGTTTGGTTCCGGTT+TGG + chr4_4:51441389-51441408 None:intergenic 40.0%
AACCGGAACCAAACATTACA+TGG - chr4_4:51441389-51441408 Msa0686810:intron 40.0%
ACCGGAACCAAACATTACAT+GGG - chr4_4:51441390-51441409 Msa0686810:intron 40.0%
! ACCCATGTAATGTTTGGTTC+CGG + chr4_4:51441394-51441413 None:intergenic 40.0%
AACTGGACCCATGTAATGTT+TGG + chr4_4:51441400-51441419 None:intergenic 40.0%
TTCGTGGCATATAAGTTTGG+TGG + chr4_4:51441439-51441458 None:intergenic 40.0%
!! TCTCATGAAAAGGTGTTTCG+TGG + chr4_4:51441455-51441474 None:intergenic 40.0%
CGTGGCATATTCTCATGAAA+AGG + chr4_4:51441465-51441484 None:intergenic 40.0%
! GGAGCATTTCTGTGATATGA+CGG - chr4_4:51441692-51441711 Msa0686810:intron 40.0%
!! TTCTGTGATATGACGGATGT+AGG - chr4_4:51441699-51441718 Msa0686810:intron 40.0%
CGTTTGTGCAATTAAACGCT+TGG + chr4_4:51441776-51441795 None:intergenic 40.0%
! TATGTGGATGTTGCTTAGTG+AGG - chr4_4:51441818-51441837 Msa0686810:intron 40.0%
GTTTGTGGAGTTGAATGACA+AGG - chr4_4:51441854-51441873 Msa0686810:intron 40.0%
!! CAAGGAAGAGTTTGATTTGG+TGG - chr4_4:51441872-51441891 Msa0686810:intron 40.0%
GTGGAGTTAATGCGTGATAA+GGG - chr4_4:51441891-51441910 Msa0686810:intron 40.0%
GACTTGATTGTCGAGGAATA+TGG - chr4_4:51441924-51441943 Msa0686810:intron 40.0%
GCTTCATAAGACCAAATTGC+AGG - chr4_4:51441947-51441966 Msa0686810:intron 40.0%
GGAAGCAATTTCCTGCAATT+TGG + chr4_4:51441961-51441980 None:intergenic 40.0%
!! TAAGAGTATCAGATTCTGGG+TGG - chr4_4:51442079-51442098 Msa0686810:intron 40.0%
! GTAGCTGACTCTGCCTTATA+TGG - chr4_4:51437714-51437733 Msa0686810:CDS 45.0%
ATTACCATGGCGACAACGAA+AGG + chr4_4:51438291-51438310 None:intergenic 45.0%
GCTGGTAACAAGTTATTGGC+AGG + chr4_4:51438318-51438337 None:intergenic 45.0%
!!! CTGCGCAATGATGGTTTTGA+TGG - chr4_4:51438398-51438417 Msa0686810:CDS 45.0%
TACAGAACTTGGGGAAGAAG+GGG - chr4_4:51438712-51438731 Msa0686810:intron 45.0%
CATCTCAGTACTTTGTGCTG+TGG - chr4_4:51438743-51438762 Msa0686810:intron 45.0%
!! AGGGTTGACTAGCTTGTTTC+CGG - chr4_4:51438922-51438941 Msa0686810:intron 45.0%
!! TTGACTAGCTTGTTTCCGGA+AGG - chr4_4:51438926-51438945 Msa0686810:intron 45.0%
GAGAACACTAGTCGCTGTTT+CGG - chr4_4:51439033-51439052 Msa0686810:intron 45.0%
GAGCCTCATGTTGAACCTTT+AGG - chr4_4:51439153-51439172 Msa0686810:intron 45.0%
! TTTTCCTGCACTATGCTGTC+TGG - chr4_4:51439265-51439284 Msa0686810:intron 45.0%
GCGAGTCTCATTCTCTATTC+AGG + chr4_4:51439542-51439561 None:intergenic 45.0%
GATAGGTTCCATTGAGGTCT+AGG - chr4_4:51439704-51439723 Msa0686810:intron 45.0%
TAGGAATGTTAGGCAATCGC+AGG - chr4_4:51439723-51439742 Msa0686810:intron 45.0%
GTTTACACCATACCCATAGG+TGG + chr4_4:51440569-51440588 None:intergenic 45.0%
CCTTAACATGCGGTTTCTGA+GGG + chr4_4:51440593-51440612 None:intergenic 45.0%
ACGCAGATCCAATTGCCAAT+CGG - chr4_4:51440759-51440778 Msa0686810:intron 45.0%
TGTACGAAATTCCGTAGCAC+TGG - chr4_4:51441020-51441039 Msa0686810:intron 45.0%
TTGGAGTAACAGGAATGGCT+GGG - chr4_4:51441046-51441065 Msa0686810:intron 45.0%
AAGACAATCAGGCTGCTTCA+AGG + chr4_4:51441088-51441107 None:intergenic 45.0%
TTGAAGCAGCCTGATTGTCT+TGG - chr4_4:51441087-51441106 Msa0686810:intron 45.0%
CTGCACCGTAAACTTTCCAT+GGG + chr4_4:51441116-51441135 None:intergenic 45.0%
GGTGATGAAACCATCAAGGA+TGG + chr4_4:51441172-51441191 None:intergenic 45.0%
TGGGTGACTTCTTGGGATAT+TGG + chr4_4:51441237-51441256 None:intergenic 45.0%
AAAGAGGTGGGTGACTTCTT+GGG + chr4_4:51441244-51441263 None:intergenic 45.0%
AAAAGAGGTGGGTGACTTCT+TGG + chr4_4:51441245-51441264 None:intergenic 45.0%
! AAGAAGTCACCCACCTCTTT+TGG - chr4_4:51441244-51441263 Msa0686810:intron 45.0%
! AGAAGTCACCCACCTCTTTT+GGG - chr4_4:51441245-51441264 Msa0686810:intron 45.0%
ATATGGGTGAGAGAGGAAGA+TGG + chr4_4:51441360-51441379 None:intergenic 45.0%
GAGTGTTATATGGGTGAGAG+AGG + chr4_4:51441367-51441386 None:intergenic 45.0%
! ATAAGTTTGGTGGACCGAAC+CGG + chr4_4:51441429-51441448 None:intergenic 45.0%
AAATTTGGGTAAGGGAGTCG+TGG + chr4_4:51441483-51441502 None:intergenic 45.0%
CGTTACATCCTATGCACCTT+CGG - chr4_4:51441524-51441543 Msa0686810:intron 45.0%
! GTATGTAACCGAAGGTGCAT+AGG + chr4_4:51441535-51441554 None:intergenic 45.0%
ATCCAGGAAACAGGTACACT+TGG - chr4_4:51441670-51441689 Msa0686810:intron 45.0%
TCCAGGAAACAGGTACACTT+GGG - chr4_4:51441671-51441690 Msa0686810:intron 45.0%
TGCTTGCAAAGCAACATGTG+TGG - chr4_4:51441724-51441743 Msa0686810:intron 45.0%
GCTTGCAAAGCAACATGTGT+GGG - chr4_4:51441725-51441744 Msa0686810:intron 45.0%
! CAAACGGCGATGTTTTCACT+TGG - chr4_4:51441790-51441809 Msa0686810:intron 45.0%
GGTGGAGTTAATGCGTGATA+AGG - chr4_4:51441890-51441909 Msa0686810:intron 45.0%
TGCGTGATAAGGGTGAGATT+TGG - chr4_4:51441901-51441920 Msa0686810:intron 45.0%
GCGTGATAAGGGTGAGATTT+GGG - chr4_4:51441902-51441921 Msa0686810:intron 45.0%
! GATTTGGGACTTGATTGTCG+AGG - chr4_4:51441917-51441936 Msa0686810:intron 45.0%
TGAAACTCAAACCGCAGAAC+TGG + chr4_4:51441999-51442018 None:intergenic 45.0%
AGGATAACTGATGCTGCAGC+TGG + chr4_4:51438336-51438355 None:intergenic 50.0%
GCTGCAGCATCAGTTATCCT+TGG - chr4_4:51438336-51438355 Msa0686810:CDS 50.0%
AACCATCATTGCGCAGCAGA+GGG + chr4_4:51438394-51438413 None:intergenic 50.0%
AAACCATCATTGCGCAGCAG+AGG + chr4_4:51438395-51438414 None:intergenic 50.0%
! AGCAAGGACATGCTGACTAC+AGG + chr4_4:51438484-51438503 None:intergenic 50.0%
CATGTCCTTGCTGCTGAAAC+AGG - chr4_4:51438492-51438511 Msa0686810:CDS 50.0%
TCCTTGCTGCTGAAACAGGT+TGG - chr4_4:51438496-51438515 Msa0686810:CDS 50.0%
ACCAACCTGTTTCAGCAGCA+AGG + chr4_4:51438500-51438519 None:intergenic 50.0%
CAGTACTTTGTGCTGTGGAC+AGG - chr4_4:51438748-51438767 Msa0686810:intron 50.0%
! GTCGCTGTTTCGGTTGACAA+TGG - chr4_4:51439043-51439062 Msa0686810:intron 50.0%
GAAACCAGACAGCATAGTGC+AGG + chr4_4:51439272-51439291 None:intergenic 50.0%
GGCGTTTACACCATACCCAT+AGG + chr4_4:51440572-51440591 None:intergenic 50.0%
CCCTCAGAAACCGCATGTTA+AGG - chr4_4:51440590-51440609 Msa0686810:intron 50.0%
GCCTTAACATGCGGTTTCTG+AGG + chr4_4:51440594-51440613 None:intergenic 50.0%
! ACGAAATTCCGTAGCACTGG+TGG - chr4_4:51441023-51441042 Msa0686810:intron 50.0%
!! AATTCCGTAGCACTGGTGGT+TGG - chr4_4:51441027-51441046 Msa0686810:intron 50.0%
TACTCCAACCACCAGTGCTA+CGG + chr4_4:51441034-51441053 None:intergenic 50.0%
GGTGGTTGGAGTAACAGGAA+TGG - chr4_4:51441041-51441060 Msa0686810:intron 50.0%
GTTGGAGTAACAGGAATGGC+TGG - chr4_4:51441045-51441064 Msa0686810:intron 50.0%
ATCAGGCTGCTTCAAGGCTT+TGG + chr4_4:51441082-51441101 None:intergenic 50.0%
AAGCAGCCTGATTGTCTTGG+AGG - chr4_4:51441090-51441109 Msa0686810:intron 50.0%
GGAGGCCCATGGAAAGTTTA+CGG - chr4_4:51441108-51441127 Msa0686810:intron 50.0%
GCTGCACCGTAAACTTTCCA+TGG + chr4_4:51441117-51441136 None:intergenic 50.0%
GGAAGAAGGAAACCAACCGT+CGG + chr4_4:51441151-51441170 None:intergenic 50.0%
! AGCTGAGTTGACAGCGTCAA+AGG + chr4_4:51441193-51441212 None:intergenic 50.0%
GAACGTGACCCAAAAGAGGT+GGG + chr4_4:51441256-51441275 None:intergenic 50.0%
ACTGGAACGTGACCCAAAAG+AGG + chr4_4:51441260-51441279 None:intergenic 50.0%
TGGGTCACGTTCCAGTTTGT+AGG - chr4_4:51441264-51441283 Msa0686810:intron 50.0%
CATGGGTCCAGTTCATGATC+CGG - chr4_4:51441407-51441426 Msa0686810:intron 50.0%
GTCCAGTTCATGATCCGGTT+CGG - chr4_4:51441412-51441431 Msa0686810:intron 50.0%
AGCATGTTGTGTGCACTCCT+TGG + chr4_4:51441594-51441613 None:intergenic 50.0%
GCTGCCATATGTCGCCATTT+AGG - chr4_4:51441633-51441652 Msa0686810:intron 50.0%
TCCCAAGTGTACCTGTTTCC+TGG + chr4_4:51441675-51441694 None:intergenic 50.0%
AACTGGCACCGTTGCTTCAA+AGG + chr4_4:51441982-51442001 None:intergenic 50.0%
ATTCTGGGTGGCTAAGCTGA+GGG - chr4_4:51442091-51442110 Msa0686810:intron 50.0%
TCGACCTTTCGTTGTCGCCA+TGG - chr4_4:51438284-51438303 Msa0686810:CDS 55.0%
TGCGCAGCAGAGGGTCAAAA+AGG + chr4_4:51438385-51438404 None:intergenic 55.0%
AGAGAACCACGGCCACCTAT+GGG - chr4_4:51440554-51440573 Msa0686810:intron 55.0%
! GCACTGGTGGTTGGAGTAAC+AGG - chr4_4:51441036-51441055 Msa0686810:intron 55.0%
! GCTGCTTCAAGGCTTTGGCT+AGG + chr4_4:51441077-51441096 None:intergenic 55.0%
CATGGGCCTCCAAGACAATC+AGG + chr4_4:51441099-51441118 None:intergenic 55.0%
CTGATTGTCTTGGAGGCCCA+TGG - chr4_4:51441097-51441116 Msa0686810:intron 55.0%
AGAAGGAAACCAACCGTCGG+CGG + chr4_4:51441148-51441167 None:intergenic 55.0%
GGAACGTGACCCAAAAGAGG+TGG + chr4_4:51441257-51441276 None:intergenic 55.0%
GACCGAACCGGATCATGAAC+TGG + chr4_4:51441417-51441436 None:intergenic 55.0%
! AAGCAACGGTGCCAGTTCTG+CGG - chr4_4:51441985-51442004 Msa0686810:intron 55.0%
GATTCTGGGTGGCTAAGCTG+AGG - chr4_4:51442090-51442109 Msa0686810:intron 55.0%
GACCCTCTGCTGCGCAATGA+TGG - chr4_4:51438389-51438408 Msa0686810:CDS 60.0%
GAGAGAACCACGGCCACCTA+TGG - chr4_4:51440553-51440572 Msa0686810:intron 60.0%
ACCACGGCCACCTATGGGTA+TGG - chr4_4:51440559-51440578 Msa0686810:intron 60.0%
ACCATACCCATAGGTGGCCG+TGG + chr4_4:51440563-51440582 None:intergenic 60.0%
GGGTCTCGTGCAGCCAAAGC+CGG - chr4_4:51438235-51438254 Msa0686810:CDS 65.0%
GAAACCAACCGTCGGCGGAG+CGG + chr4_4:51441143-51441162 None:intergenic 65.0%
! GCAGCTCGCCGCTCCGCCGA+CGG - chr4_4:51441132-51441151 Msa0686810:intron 80.0%
! CTCGCCGCTCCGCCGACGGT+TGG - chr4_4:51441136-51441155 Msa0686810:intron 80.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 51437557 51442145 51437557 ID=Msa0686810;Name=Msa0686810
chr4_4 mRNA 51437557 51442145 51437557 ID=Msa0686810-mRNA-1;Parent=Msa0686810;Name=Msa0686810-mRNA-1;_AED=0.32;_eAED=0.35;_QI=0|0|0|0.4|1|1|5|0|413
chr4_4 exon 51442140 51442145 51442140 ID=Msa0686810-mRNA-1:exon:13323;Parent=Msa0686810-mRNA-1
chr4_4 exon 51440933 51440985 51440933 ID=Msa0686810-mRNA-1:exon:13322;Parent=Msa0686810-mRNA-1
chr4_4 exon 51440304 51440346 51440304 ID=Msa0686810-mRNA-1:exon:13321;Parent=Msa0686810-mRNA-1
chr4_4 exon 51438777 51438783 51438777 ID=Msa0686810-mRNA-1:exon:13320;Parent=Msa0686810-mRNA-1
chr4_4 exon 51437557 51438689 51437557 ID=Msa0686810-mRNA-1:exon:13319;Parent=Msa0686810-mRNA-1
chr4_4 CDS 51442140 51442145 51442140 ID=Msa0686810-mRNA-1:cds;Parent=Msa0686810-mRNA-1
chr4_4 CDS 51440933 51440985 51440933 ID=Msa0686810-mRNA-1:cds;Parent=Msa0686810-mRNA-1
chr4_4 CDS 51440304 51440346 51440304 ID=Msa0686810-mRNA-1:cds;Parent=Msa0686810-mRNA-1
chr4_4 CDS 51438777 51438783 51438777 ID=Msa0686810-mRNA-1:cds;Parent=Msa0686810-mRNA-1
chr4_4 CDS 51437557 51438689 51437557 ID=Msa0686810-mRNA-1:cds;Parent=Msa0686810-mRNA-1
Gene Sequence

>Msa0686810

ATGATTAACTTGGGGAAGAAGGGGTGTGTTTTCATCTCAGTACTTTGTGCTGTGGACAGCAAAGTGTGTCTTCAAGATGAAGGAAAGTTGGCATCAAGATTGTTGCAAGTGATGAATGTACGAAATTCCGTAGCACTGGTGGTTGGAGTAACAGGAATGGCTGGGCTAAGCCTAGCCAAAGCCTTGAAGCAGCCTGATTGTCTTGGAGGCCCATGGAAAGTTTACGGTGCAGCTCGCCGCTCCGCCGACGGTTGGTTTCCTTCTTCCATCCTTGATGGTTTCATCACCTTTGACGCTGTCAACTCAGCTGACACACATACCAAGCTGTTACCAATATCCCAAGAAGTCACCCACCTCTTTTGGGTCACGTTCCAGTTTGTAGGTGATGAAGAAGTTAACATCACCGTTAACAAAACCATGCTTCTTAATGTTCTCACCGTCCTCAAATCTTCTCCATCTTCCTCTCTCACCCATATAACACTCCAAACCGGAACCAAACATTACATGGGTCCAGTTCATGATCCGGTTCGGTCCACCAAACTTATATGCCACGAAACACCTTTTCATGAGAATATGCCACGACTCCCTTACCCAAATTTCTATTACGTGCTTGAGGATCTCGTTACATCCTATGCACCTTCGGTTACATACTCAATACATCGATCCTCTATCATAATAGGTATGTCACCAAGGAGTGCACACAACATGCTAATGAAGCTAGCAGTATATGCTGCCATATGTCGCCATTTAGGATTACCTTTTCTTTATCCAGGAAACAGGTACACTTGGGAGCATTTCTGTGATATGACGGATGTAGGCGTGCTTGCAAAGCAACATGTGTGGGCTGCAGTTACAGAAAATGCTAAGAACCAAGCGTTTAATTGCACAAACGGCGATGTTTTCACTTGGAAGAGTATGTGGATGTTGCTTAGTGAGGTTTTTGATGTTAAGTTTGTGGAGTTGAATGACAAGGAAGAGTTTGATTTGGTGGAGTTAATGCGTGATAAGGGTGAGATTTGGGACTTGATTGTCGAGGAATATGGGCTTCATAAGACCAAATTGCAGGAAATTGCTTCCTTTGAAGCAACGGTGCCAGTTCTGCGGTTTGAGTTTCAACATGTATCTAGTATGAACAAGAGTAAGGATTATGGGTTCTTTGAGTATGCTGATACGTTTAAGAGTATCAGATTCTGGGTGGCTAAGCTGAGGGAGATGAAACTCGTACCCGTCTACCAACATTGA

Protein sequence

>Msa0686810

MINLGKKGCVFISVLCAVDSKVCLQDEGKLASRLLQVMNVRNSVALVVGVTGMAGLSLAKALKQPDCLGGPWKVYGAARRSADGWFPSSILDGFITFDAVNSADTHTKLLPISQEVTHLFWVTFQFVGDEEVNITVNKTMLLNVLTVLKSSPSSSLTHITLQTGTKHYMGPVHDPVRSTKLICHETPFHENMPRLPYPNFYYVLEDLVTSYAPSVTYSIHRSSIIIGMSPRSAHNMLMKLAVYAAICRHLGLPFLYPGNRYTWEHFCDMTDVGVLAKQHVWAAVTENAKNQAFNCTNGDVFTWKSMWMLLSEVFDVKFVELNDKEEFDLVELMRDKGEIWDLIVEEYGLHKTKLQEIASFEATVPVLRFEFQHVSSMNKSKDYGFFEYADTFKSIRFWVAKLREMKLVPVYQH*