Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194280 | XP_003593786.1 | 93.407 | 273 | 13 | 1 | 1 | 268 | 1 | 273 | 0.0 | 515 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194280 | sp|Q8LFP7|NIP12_ARATH | 68.093 | 257 | 70 | 2 | 24 | 268 | 38 | 294 | 1.10e-120 | 349 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194280 | G7ILK7 | 93.407 | 273 | 13 | 1 | 1 | 268 | 1 | 273 | 0.0 | 515 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0194280 | 0.828672 | 7.892830e-55 | -8.615850e-47 |
| Msa0024210 | Msa0194280 | -0.801047 | 1.082385e-48 | -8.615850e-47 |
| Msa0024680 | Msa0194280 | 0.805252 | 1.460059e-49 | -8.615850e-47 |
| Msa0032840 | Msa0194280 | -0.824816 | 6.575254e-54 | -8.615850e-47 |
| Msa0053110 | Msa0194280 | 0.807153 | 5.808523e-50 | -8.615850e-47 |
| Msa0069330 | Msa0194280 | 0.803078 | 4.138093e-49 | -8.615850e-47 |
| Msa0073670 | Msa0194280 | 0.814050 | 1.876444e-51 | -8.615850e-47 |
| Msa0096670 | Msa0194280 | 0.807779 | 4.278223e-50 | -8.615850e-47 |
| Msa0104550 | Msa0194280 | 0.802046 | 6.756525e-49 | -8.615850e-47 |
| Msa0105420 | Msa0194280 | 0.800491 | 1.405694e-48 | -8.615850e-47 |
| Msa0110970 | Msa0194280 | 0.832556 | 8.836258e-56 | -8.615850e-47 |
| Msa0114540 | Msa0194280 | -0.834983 | 2.185805e-56 | -8.615850e-47 |
| Msa0120010 | Msa0194280 | -0.801041 | 1.085632e-48 | -8.615850e-47 |
| Msa0120020 | Msa0194280 | -0.803141 | 4.016879e-49 | -8.615850e-47 |
| Msa0120040 | Msa0194280 | -0.808018 | 3.805177e-50 | -8.615850e-47 |
| Msa0120330 | Msa0194280 | 0.805825 | 1.107245e-49 | -8.615850e-47 |
| Msa0124340 | Msa0194280 | 0.805020 | 1.633285e-49 | -8.615850e-47 |
| Msa0136080 | Msa0194280 | 0.812922 | 3.322887e-51 | -8.615850e-47 |
| Msa0136110 | Msa0194280 | 0.811435 | 7.013025e-51 | -8.615850e-47 |
| Msa0137150 | Msa0194280 | 0.807298 | 5.411658e-50 | -8.615850e-47 |
| Msa0138820 | Msa0194280 | -0.810503 | 1.115984e-50 | -8.615850e-47 |
| Msa0140780 | Msa0194280 | 0.806913 | 6.530648e-50 | -8.615850e-47 |
| Msa0143080 | Msa0194280 | 0.821007 | 5.075840e-53 | -8.615850e-47 |
| Msa0146260 | Msa0194280 | 0.801287 | 9.670370e-49 | -8.615850e-47 |
| Msa0148100 | Msa0194280 | 0.808286 | 3.337733e-50 | -8.615850e-47 |
| Msa0157290 | Msa0194280 | 0.829607 | 4.682238e-55 | -8.615850e-47 |
| Msa0172350 | Msa0194280 | 0.819161 | 1.343160e-52 | -8.615850e-47 |
| Msa0194280 | Msa0197230 | 0.816512 | 5.322996e-52 | -8.615850e-47 |
| Msa0194280 | Msa0215320 | -0.805175 | 1.515082e-49 | -8.615850e-47 |
| Msa0194280 | Msa0230550 | -0.823075 | 1.683471e-53 | -8.615850e-47 |
| Msa0194280 | Msa0235980 | 0.950078 | 3.454616e-108 | -8.615850e-47 |
| Msa0194280 | Msa0236980 | 0.821458 | 3.994792e-53 | -8.615850e-47 |
| Msa0194280 | Msa0238890 | 0.822356 | 2.474403e-53 | -8.615850e-47 |
| Msa0194280 | Msa0259560 | 0.826090 | 3.281934e-54 | -8.615850e-47 |
| Msa0194280 | Msa0267760 | 0.816678 | 4.885933e-52 | -8.615850e-47 |
| Msa0194280 | Msa0274290 | 0.954400 | 3.219668e-112 | -8.615850e-47 |
| Msa0194280 | Msa0277530 | 0.802658 | 5.054310e-49 | -8.615850e-47 |
| Msa0194280 | Msa0287650 | 0.824966 | 6.061750e-54 | -8.615850e-47 |
| Msa0194280 | Msa0294560 | -0.800821 | 1.203721e-48 | -8.615850e-47 |
| Msa0194280 | Msa0308830 | 0.803111 | 4.074507e-49 | -8.615850e-47 |
| Msa0194280 | Msa0314480 | 0.961825 | 3.742233e-120 | -8.615850e-47 |
| Msa0194280 | Msa0328210 | 0.804146 | 2.485308e-49 | -8.615850e-47 |
| Msa0194280 | Msa0344570 | 0.821741 | 3.436181e-53 | -8.615850e-47 |
| Msa0194280 | Msa0369570 | 0.809171 | 2.159195e-50 | -8.615850e-47 |
| Msa0194280 | Msa0378340 | 0.806914 | 6.524888e-50 | -8.615850e-47 |
| Msa0194280 | Msa0392420 | 0.803294 | 3.734219e-49 | -8.615850e-47 |
| Msa0194280 | Msa0392460 | 0.804447 | 2.150752e-49 | -8.615850e-47 |
| Msa0194280 | Msa0392490 | 0.822701 | 2.057287e-53 | -8.615850e-47 |
| Msa0194280 | Msa0402820 | 0.810360 | 1.197971e-50 | -8.615850e-47 |
| Msa0194280 | Msa0418220 | 0.801123 | 1.044650e-48 | -8.615850e-47 |
| Msa0194280 | Msa0423520 | 0.807274 | 5.475461e-50 | -8.615850e-47 |
| Msa0194280 | Msa0427690 | 0.808289 | 3.331494e-50 | -8.615850e-47 |
| Msa0194280 | Msa0430820 | 0.809831 | 1.557721e-50 | -8.615850e-47 |
| Msa0194280 | Msa0436280 | -0.814218 | 1.722912e-51 | -8.615850e-47 |
| Msa0194280 | Msa0449830 | 0.808542 | 2.942363e-50 | -8.615850e-47 |
| Msa0194280 | Msa0461720 | 0.806395 | 8.399374e-50 | -8.615850e-47 |
| Msa0194280 | Msa0475790 | 0.808313 | 3.292598e-50 | -8.615850e-47 |
| Msa0194280 | Msa0487570 | 0.805653 | 1.203127e-49 | -8.615850e-47 |
| Msa0194280 | Msa0487630 | 0.829092 | 6.244020e-55 | -8.615850e-47 |
| Msa0194280 | Msa0497420 | 0.809853 | 1.541192e-50 | -8.615850e-47 |
| Msa0194280 | Msa0503590 | 0.819722 | 1.000293e-52 | -8.615850e-47 |
| Msa0194280 | Msa0518520 | 0.806484 | 8.042921e-50 | -8.615850e-47 |
| Msa0194280 | Msa0523460 | 0.800098 | 1.690328e-48 | -8.615850e-47 |
| Msa0194280 | Msa0526710 | 0.810469 | 1.134856e-50 | -8.615850e-47 |
| Msa0194280 | Msa0537920 | 0.815214 | 1.036857e-51 | -8.615850e-47 |
| Msa0194280 | Msa0551950 | 0.803436 | 3.489194e-49 | -8.615850e-47 |
| Msa0194280 | Msa0574890 | 0.838978 | 2.085570e-57 | -8.615850e-47 |
| Msa0194280 | Msa0590680 | 0.808170 | 3.532360e-50 | -8.615850e-47 |
| Msa0194280 | Msa0601530 | 0.804017 | 2.643242e-49 | -8.615850e-47 |
| Msa0194280 | Msa0646090 | 0.808283 | 3.341468e-50 | -8.615850e-47 |
| Msa0194280 | Msa0687000 | 0.813695 | 2.247368e-51 | -8.615850e-47 |
| Msa0194280 | Msa0701280 | 0.801046 | 1.083295e-48 | -8.615850e-47 |
| Msa0194280 | Msa0702350 | 0.802969 | 4.359261e-49 | -8.615850e-47 |
| Msa0194280 | Msa0720040 | 0.814401 | 1.569563e-51 | -8.615850e-47 |
| Msa0194280 | Msa0723000 | 0.802808 | 4.705440e-49 | -8.615850e-47 |
| Msa0194280 | Msa0741900 | 0.803867 | 2.840374e-49 | -8.615850e-47 |
| Msa0194280 | Msa0761580 | 0.807047 | 6.117529e-50 | -8.615850e-47 |
| Msa0194280 | Msa0761940 | 0.800896 | 1.162228e-48 | -8.615850e-47 |
| Msa0194280 | Msa0777570 | -0.817066 | 3.999265e-52 | -8.615850e-47 |
| Msa0194280 | Msa0787750 | 0.812148 | 4.905995e-51 | -8.615850e-47 |
| Msa0194280 | Msa0804680 | 0.809602 | 1.745076e-50 | -8.615850e-47 |
| Msa0194280 | Msa0807930 | 0.805226 | 1.478357e-49 | -8.615850e-47 |
| Msa0194280 | Msa0822990 | 0.801152 | 1.030171e-48 | -8.615850e-47 |
| Msa0194280 | Msa0824680 | 0.805613 | 1.226678e-49 | -8.615850e-47 |
| Msa0194280 | Msa0841940 | 0.800167 | 1.636752e-48 | -8.615850e-47 |
| Msa0194280 | Msa0849100 | 0.809675 | 1.682710e-50 | -8.615850e-47 |
| Msa0194280 | Msa0862100 | 0.805423 | 1.344814e-49 | -8.615850e-47 |
| Msa0194280 | Msa0863870 | 0.809051 | 2.290158e-50 | -8.615850e-47 |
| Msa0194280 | Msa0869100 | 0.805436 | 1.335936e-49 | -8.615850e-47 |
| Msa0194280 | Msa0872310 | 0.823600 | 1.269408e-53 | -8.615850e-47 |
| Msa0194280 | Msa0880140 | 0.830720 | 2.505870e-55 | -8.615850e-47 |
| Msa0194280 | Msa0896210 | 0.807023 | 6.190027e-50 | -8.615850e-47 |
| Msa0194280 | Msa0896220 | 0.833903 | 4.081578e-56 | -8.615850e-47 |
| Msa0194280 | Msa0896970 | 0.817996 | 2.467748e-52 | -8.615850e-47 |
| Msa0194280 | Msa0908050 | 0.808655 | 2.783834e-50 | -8.615850e-47 |
| Msa0194280 | Msa0930780 | 0.837366 | 5.423612e-57 | -8.615850e-47 |
| Msa0194280 | Msa0936340 | 0.831206 | 1.903596e-55 | -8.615850e-47 |
| Msa0194280 | Msa0937550 | 0.819225 | 1.298935e-52 | -8.615850e-47 |
| Msa0194280 | Msa0955300 | 0.804433 | 2.165399e-49 | -8.615850e-47 |
| Msa0194280 | Msa0979550 | 0.826604 | 2.475857e-54 | -8.615850e-47 |
| Msa0194280 | Msa0996080 | 0.835828 | 1.336814e-56 | -8.615850e-47 |
| Msa0194280 | Msa1007610 | -0.809802 | 1.580467e-50 | -8.615850e-47 |
| Msa0194280 | Msa1008060 | -0.821598 | 3.707424e-53 | -8.615850e-47 |
| Msa0194280 | Msa1013770 | 0.816754 | 4.698765e-52 | -8.615850e-47 |
| Msa0194280 | Msa1014270 | 0.824677 | 7.092470e-54 | -8.615850e-47 |
| Msa0194280 | Msa1037700 | -0.806250 | 9.013713e-50 | -8.615850e-47 |
| Msa0194280 | Msa1040400 | 0.802751 | 4.835464e-49 | -8.615850e-47 |
| Msa0194280 | Msa1041530 | 0.810551 | 1.089607e-50 | -8.615850e-47 |
| Msa0194280 | Msa1044340 | 0.800992 | 1.110822e-48 | -8.615850e-47 |
| Msa0194280 | Msa1055260 | 0.803332 | 3.666610e-49 | -8.615850e-47 |
| Msa0194280 | Msa1055280 | 0.808184 | 3.509183e-50 | -8.615850e-47 |
| Msa0194280 | Msa1078710 | 0.815629 | 8.383013e-52 | -8.615850e-47 |
| Msa0194280 | Msa1093840 | 0.802879 | 4.549362e-49 | -8.615850e-47 |
| Msa0194280 | Msa1123880 | 0.829258 | 5.691613e-55 | -8.615850e-47 |
| Msa0194280 | Msa1124680 | -0.806337 | 8.637802e-50 | -8.615850e-47 |
| Msa0194280 | Msa1125000 | 0.802252 | 6.126252e-49 | -8.615850e-47 |
| Msa0194280 | Msa1127140 | 0.805433 | 1.338081e-49 | -8.615850e-47 |
| Msa0194280 | Msa1127950 | 0.810918 | 9.075364e-51 | -8.615850e-47 |
| Msa0194280 | Msa1128710 | 0.812854 | 3.437583e-51 | -8.615850e-47 |
| Msa0194280 | Msa1133710 | 0.823798 | 1.140844e-53 | -8.615850e-47 |
| Msa0194280 | Msa1134110 | 0.803114 | 4.068338e-49 | -8.615850e-47 |
| Msa0194280 | Msa1139810 | 0.804749 | 1.860224e-49 | -8.615850e-47 |
| Msa0194280 | Msa1154030 | 0.823342 | 1.458791e-53 | -8.615850e-47 |
| Msa0194280 | Msa1165870 | 0.804646 | 1.954733e-49 | -8.615850e-47 |
| Msa0194280 | Msa1169710 | 0.817960 | 2.514667e-52 | -8.615850e-47 |
| Msa0194280 | Msa1179460 | 0.801963 | 7.024573e-49 | -8.615850e-47 |
| Msa0194280 | Msa1193290 | 0.801919 | 7.173044e-49 | -8.615850e-47 |
| Msa0194280 | Msa1211090 | 0.825885 | 3.673313e-54 | -8.615850e-47 |
| Msa0194280 | Msa1218280 | -0.823310 | 1.483889e-53 | -8.615850e-47 |
| Msa0194280 | Msa1222970 | 0.803171 | 3.959524e-49 | -8.615850e-47 |
| Msa0194280 | Msa1227950 | 0.800085 | 1.700131e-48 | -8.615850e-47 |
| Msa0194280 | Msa1228890 | 0.806853 | 6.721829e-50 | -8.615850e-47 |
| Msa0194280 | Msa1237030 | 0.806698 | 7.248315e-50 | -8.615850e-47 |
| Msa0194280 | Msa1264020 | 0.803218 | 3.871393e-49 | -8.615850e-47 |
| Msa0194280 | Msa1267220 | 0.808355 | 3.225979e-50 | -8.615850e-47 |
| Msa0194280 | Msa1269580 | -0.806327 | 8.683260e-50 | -8.615850e-47 |
| Msa0194280 | Msa1284260 | 0.806007 | 1.013848e-49 | -8.615850e-47 |
| Msa0194280 | Msa1293770 | 0.804953 | 1.686351e-49 | -8.615850e-47 |
| Msa0194280 | Msa1303240 | 0.807005 | 6.243148e-50 | -8.615850e-47 |
| Msa0194280 | Msa1303250 | 0.828046 | 1.117439e-54 | -8.615850e-47 |
| Msa0194280 | Msa1305740 | 0.813654 | 2.293858e-51 | -8.615850e-47 |
| Msa0194280 | Msa1317980 | 0.800215 | 1.599870e-48 | -8.615850e-47 |
| Msa0194280 | Msa1318120 | 0.820652 | 6.126648e-53 | -8.615850e-47 |
| Msa0194280 | Msa1320740 | 0.823613 | 1.260625e-53 | -8.615850e-47 |
| Msa0194280 | Msa1322860 | 0.809790 | 1.589763e-50 | -8.615850e-47 |
| Msa0194280 | Msa1327050 | 0.809748 | 1.622910e-50 | -8.615850e-47 |
| Msa0194280 | Msa1351760 | 0.820037 | 8.473745e-53 | -8.615850e-47 |
| Msa0194280 | Msa1361400 | 0.800654 | 1.302143e-48 | -8.615850e-47 |
| Msa0194280 | Msa1362510 | 0.813786 | 2.145329e-51 | -8.615850e-47 |
| Msa0194280 | Msa1373510 | 0.800352 | 1.500309e-48 | -8.615850e-47 |
| Msa0194280 | Msa1374040 | 0.800713 | 1.266491e-48 | -8.615850e-47 |
| Msa0194280 | Msa1374550 | 0.844640 | 6.668827e-59 | -8.615850e-47 |
| Msa0194280 | Msa1382720 | 0.814081 | 1.846979e-51 | -8.615850e-47 |
| Msa0194280 | Msa1390310 | 0.814583 | 1.430594e-51 | -8.615850e-47 |
| Msa0194280 | Msa1411700 | 0.800963 | 1.126195e-48 | -8.615850e-47 |
| Msa0194280 | Msa1414930 | 0.810882 | 9.240138e-51 | -8.615850e-47 |
| Msa0194280 | Msa1429360 | -0.814919 | 1.205267e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194280 | MtrunA17_Chr2g0284581 | 93.407 | 273 | 13 | 1 | 1 | 268 | 1 | 273 | 0.0 | 515 |
| Msa0194280 | MtrunA17_Chr2g0284591 | 77.652 | 264 | 54 | 1 | 7 | 265 | 5 | 268 | 9.02e-153 | 427 |
| Msa0194280 | MtrunA17_Chr2g0284601 | 92.727 | 220 | 11 | 1 | 54 | 268 | 6 | 225 | 1.17e-145 | 407 |
| Msa0194280 | MtrunA17_Chr2g0284611 | 74.812 | 266 | 62 | 1 | 1 | 261 | 1 | 266 | 3.69e-144 | 405 |
| Msa0194280 | MtrunA17_Chr8g0379911 | 72.761 | 268 | 68 | 1 | 1 | 263 | 1 | 268 | 3.75e-142 | 400 |
| Msa0194280 | MtrunA17_Chr8g0379901 | 67.159 | 271 | 84 | 1 | 3 | 268 | 4 | 274 | 1.42e-131 | 373 |
| Msa0194280 | MtrunA17_Chr2g0284631 | 66.544 | 272 | 79 | 3 | 1 | 260 | 53 | 324 | 2.06e-129 | 370 |
| Msa0194280 | MtrunA17_Chr4g0044201 | 53.086 | 243 | 94 | 3 | 32 | 267 | 29 | 258 | 3.06e-85 | 255 |
| Msa0194280 | MtrunA17_Chr5g0435051 | 50.209 | 239 | 105 | 4 | 18 | 248 | 22 | 254 | 1.91e-75 | 230 |
| Msa0194280 | MtrunA17_Chr3g0079421 | 51.046 | 239 | 109 | 3 | 18 | 251 | 8 | 243 | 1.47e-74 | 228 |
| Msa0194280 | MtrunA17_Chr4g0001221 | 46.614 | 251 | 120 | 4 | 21 | 260 | 58 | 305 | 9.28e-62 | 197 |
| Msa0194280 | MtrunA17_Chr7g0217331 | 44.395 | 223 | 116 | 3 | 31 | 246 | 28 | 249 | 1.25e-60 | 192 |
| Msa0194280 | MtrunA17_Chr1g0201331 | 45.200 | 250 | 113 | 5 | 26 | 254 | 54 | 300 | 7.01e-59 | 189 |
| Msa0194280 | MtrunA17_Chr5g0426131 | 44.061 | 261 | 120 | 7 | 15 | 255 | 5 | 259 | 3.30e-58 | 186 |
| Msa0194280 | MtrunA17_Chr2g0333771 | 47.442 | 215 | 103 | 3 | 36 | 243 | 78 | 289 | 1.02e-57 | 186 |
| Msa0194280 | MtrunA17_Chr1g0184541 | 38.605 | 215 | 126 | 3 | 38 | 247 | 62 | 275 | 1.09e-40 | 142 |
| Msa0194280 | MtrunA17_Chr4g0001111 | 50.667 | 150 | 69 | 2 | 34 | 181 | 71 | 217 | 8.88e-37 | 130 |
| Msa0194280 | MtrunA17_Chr4g0001161 | 47.518 | 141 | 69 | 2 | 51 | 189 | 1 | 138 | 1.27e-29 | 108 |
| Msa0194280 | MtrunA17_Chr4g0001151 | 42.857 | 133 | 56 | 3 | 51 | 181 | 1 | 115 | 5.80e-20 | 87.4 |
| Msa0194280 | MtrunA17_Chr1g0188771 | 30.705 | 241 | 144 | 8 | 24 | 248 | 10 | 243 | 7.05e-19 | 83.6 |
| Msa0194280 | MtrunA17_Chr8g0340161 | 31.401 | 207 | 130 | 5 | 37 | 231 | 18 | 224 | 8.04e-19 | 83.2 |
| Msa0194280 | MtrunA17_Chr1g0146161 | 30.357 | 224 | 135 | 8 | 19 | 231 | 7 | 220 | 3.92e-18 | 81.3 |
| Msa0194280 | MtrunA17_Chr1g0146171 | 30.120 | 249 | 151 | 9 | 19 | 253 | 7 | 246 | 4.12e-17 | 78.6 |
| Msa0194280 | MtrunA17_Chr4g0001121 | 41.935 | 93 | 45 | 2 | 177 | 260 | 6 | 98 | 1.68e-16 | 73.2 |
| Msa0194280 | MtrunA17_Chr6g0478191 | 28.395 | 243 | 153 | 8 | 21 | 248 | 7 | 243 | 1.91e-16 | 76.6 |
| Msa0194280 | MtrunA17_Chr2g0331261 | 29.032 | 248 | 159 | 8 | 18 | 251 | 3 | 247 | 4.14e-16 | 75.9 |
| Msa0194280 | MtrunA17_Chr5g0399341 | 32.609 | 230 | 139 | 9 | 37 | 251 | 18 | 246 | 7.54e-16 | 75.1 |
| Msa0194280 | MtrunA17_Chr7g0264961 | 29.778 | 225 | 143 | 7 | 37 | 247 | 20 | 243 | 9.91e-14 | 69.3 |
| Msa0194280 | MtrunA17_Chr4g0030861 | 30.396 | 227 | 139 | 9 | 43 | 251 | 26 | 251 | 5.66e-12 | 64.3 |
| Msa0194280 | MtrunA17_Chr2g0326621 | 29.609 | 179 | 107 | 5 | 72 | 232 | 84 | 261 | 9.76e-12 | 63.9 |
| Msa0194280 | MtrunA17_Chr3g0145671 | 26.957 | 230 | 138 | 7 | 38 | 242 | 37 | 261 | 1.25e-11 | 63.5 |
| Msa0194280 | MtrunA17_Chr5g0436701 | 29.493 | 217 | 124 | 9 | 41 | 232 | 58 | 270 | 2.19e-11 | 62.8 |
| Msa0194280 | MtrunA17_Chr7g0264111 | 27.928 | 222 | 132 | 8 | 38 | 232 | 39 | 259 | 7.20e-11 | 61.2 |
| Msa0194280 | MtrunA17_Chr5g0397391 | 28.505 | 214 | 130 | 7 | 41 | 232 | 55 | 267 | 8.00e-11 | 61.2 |
| Msa0194280 | MtrunA17_Chr8g0386961 | 28.972 | 214 | 129 | 8 | 41 | 232 | 55 | 267 | 8.38e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0194280 | AT4G18910.1 | 68.093 | 257 | 70 | 2 | 24 | 268 | 38 | 294 | 1.12e-121 | 349 |
| Msa0194280 | AT4G19030.1 | 66.535 | 254 | 73 | 2 | 24 | 265 | 41 | 294 | 2.15e-117 | 338 |
| Msa0194280 | AT4G18910.2 | 75.556 | 180 | 37 | 1 | 24 | 196 | 38 | 217 | 1.78e-90 | 267 |
| Msa0194280 | AT5G37820.1 | 55.294 | 255 | 106 | 2 | 18 | 264 | 20 | 274 | 3.08e-90 | 269 |
| Msa0194280 | AT5G37820.2 | 55.294 | 255 | 106 | 2 | 18 | 264 | 56 | 310 | 1.14e-89 | 269 |
| Msa0194280 | AT5G37810.1 | 51.095 | 274 | 122 | 4 | 1 | 263 | 1 | 273 | 6.10e-89 | 266 |
| Msa0194280 | AT4G19030.3 | 70.556 | 180 | 46 | 1 | 24 | 196 | 41 | 220 | 9.82e-87 | 258 |
| Msa0194280 | AT2G34390.1 | 49.301 | 286 | 122 | 4 | 1 | 264 | 1 | 285 | 1.13e-81 | 247 |
| Msa0194280 | AT1G31885.1 | 50.612 | 245 | 109 | 2 | 20 | 252 | 25 | 269 | 4.87e-80 | 244 |
| Msa0194280 | AT2G34390.2 | 52.521 | 238 | 100 | 3 | 39 | 264 | 7 | 243 | 2.26e-77 | 235 |
| Msa0194280 | AT4G19030.2 | 67.879 | 165 | 46 | 1 | 24 | 181 | 41 | 205 | 5.18e-76 | 230 |
| Msa0194280 | AT1G31885.2 | 51.613 | 217 | 93 | 2 | 50 | 254 | 1 | 217 | 2.85e-73 | 225 |
| Msa0194280 | AT2G34390.3 | 53.521 | 213 | 81 | 3 | 1 | 196 | 1 | 212 | 1.37e-65 | 204 |
| Msa0194280 | AT2G34390.4 | 52.500 | 200 | 77 | 3 | 1 | 183 | 1 | 199 | 6.32e-60 | 190 |
| Msa0194280 | AT4G10380.1 | 45.306 | 245 | 114 | 5 | 27 | 254 | 63 | 304 | 1.11e-59 | 192 |
| Msa0194280 | AT1G80760.1 | 49.321 | 221 | 102 | 3 | 34 | 247 | 76 | 293 | 1.50e-59 | 191 |
| Msa0194280 | AT3G06100.1 | 37.615 | 218 | 129 | 3 | 37 | 248 | 45 | 261 | 6.70e-36 | 129 |
| Msa0194280 | AT3G06100.2 | 37.850 | 214 | 126 | 3 | 41 | 248 | 1 | 213 | 3.24e-35 | 126 |
| Msa0194280 | AT1G31885.3 | 56.842 | 95 | 41 | 0 | 20 | 114 | 25 | 119 | 2.29e-31 | 114 |
| Msa0194280 | AT2G29870.1 | 43.590 | 117 | 61 | 1 | 153 | 264 | 20 | 136 | 8.40e-23 | 91.3 |
| Msa0194280 | AT3G16240.1 | 33.333 | 207 | 126 | 5 | 37 | 231 | 18 | 224 | 2.38e-21 | 90.5 |
| Msa0194280 | AT5G47450.1 | 32.900 | 231 | 140 | 8 | 37 | 252 | 18 | 248 | 7.89e-20 | 86.3 |
| Msa0194280 | AT4G17340.1 | 32.174 | 230 | 141 | 8 | 37 | 251 | 18 | 247 | 4.37e-18 | 81.6 |
| Msa0194280 | AT1G17810.1 | 30.364 | 247 | 144 | 8 | 24 | 248 | 13 | 253 | 5.92e-17 | 79.0 |
| Msa0194280 | AT3G06100.3 | 35.461 | 141 | 84 | 3 | 114 | 248 | 41 | 180 | 2.43e-16 | 75.5 |
| Msa0194280 | AT1G73190.1 | 28.968 | 252 | 139 | 9 | 24 | 248 | 13 | 251 | 3.05e-15 | 73.9 |
| Msa0194280 | AT2G25810.1 | 28.761 | 226 | 138 | 8 | 19 | 232 | 7 | 221 | 6.37e-15 | 72.8 |
| Msa0194280 | AT4G35100.1 | 28.696 | 230 | 134 | 8 | 38 | 242 | 38 | 262 | 1.20e-12 | 67.0 |
| Msa0194280 | AT4G35100.2 | 28.696 | 230 | 134 | 8 | 38 | 242 | 38 | 262 | 1.20e-12 | 67.0 |
| Msa0194280 | AT3G26520.1 | 30.952 | 210 | 127 | 6 | 37 | 231 | 21 | 227 | 1.56e-12 | 66.2 |
| Msa0194280 | AT5G60660.1 | 26.891 | 238 | 140 | 8 | 35 | 242 | 36 | 269 | 2.09e-12 | 66.2 |
| Msa0194280 | AT2G36830.1 | 30.736 | 231 | 138 | 8 | 21 | 235 | 7 | 231 | 5.89e-12 | 64.7 |
| Msa0194280 | AT2G16850.1 | 26.609 | 233 | 135 | 8 | 38 | 242 | 36 | 260 | 3.27e-11 | 62.8 |
| Msa0194280 | AT2G39010.1 | 29.474 | 190 | 113 | 7 | 72 | 242 | 81 | 268 | 8.18e-11 | 61.6 |
Find 92 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTCTGTTGGTCACATTTC+TGG | 0.071303 | 2_1:-10171010 | Msa0194280:CDS |
| TATCTTATGTTCGTCATTTC+TGG | 0.082482 | 2_1:-10170175 | Msa0194280:CDS |
| AAGAGACCTGCCCCAATTTA+TGG | 0.163408 | 2_1:+10171731 | None:intergenic |
| AAGAGTGCCTCTTTCCTTAA+AGG | 0.183929 | 2_1:-10169089 | Msa0194280:CDS |
| TCCTGGGATTTCAATTGTTT+GGG | 0.185357 | 2_1:-10171056 | Msa0194280:CDS |
| TTCGCATATGGAAAATAAAT+TGG | 0.195186 | 2_1:+10171832 | None:intergenic |
| GTTCATTATGCTCCAGTAAT+TGG | 0.236923 | 2_1:+10169259 | None:intergenic |
| TAGAGGAATATGGATATATT+TGG | 0.245829 | 2_1:-10169195 | Msa0194280:CDS |
| TGCATGACTCATCACACTTT+TGG | 0.246215 | 2_1:+10171559 | None:intergenic |
| ATCCTGGGATTTCAATTGTT+TGG | 0.255375 | 2_1:-10171057 | Msa0194280:CDS |
| CTTATTCTTTGTCGGTGATA+TGG | 0.259310 | 2_1:-10171643 | Msa0194280:exon |
| GGGTCTCACTGTTATGGTTT+TGG | 0.266153 | 2_1:-10171035 | Msa0194280:CDS |
| TGCATCCACCAAAAGGTTTC+CGG | 0.271933 | 2_1:-10170954 | Msa0194280:CDS |
| TTCCTTAAAGGAGTAGAAAA+TGG | 0.281136 | 2_1:-10169077 | Msa0194280:CDS |
| ACGTACTTCTTGATATTTGC+AGG | 0.286199 | 2_1:-10171127 | Msa0194280:CDS |
| TTTGTTAACAGGCCAATTAC+TGG | 0.289918 | 2_1:-10169271 | Msa0194280:intron |
| CTGCTTAACCGGAAACCTTT+TGG | 0.301395 | 2_1:+10170946 | None:intergenic |
| TGTTTGGGGTCTCACTGTTA+TGG | 0.308145 | 2_1:-10171041 | Msa0194280:CDS |
| TATATAATATCTCAAGTTCT+TGG | 0.312865 | 2_1:-10170319 | Msa0194280:CDS |
| CATATCACCGACAAAGAATA+AGG | 0.326631 | 2_1:+10171644 | None:intergenic |
| GCAGGTCCTAAGCTCCTTGC+AGG | 0.331255 | 2_1:+10169236 | None:intergenic |
| ATAAAGAGTTTAGAGGAATA+TGG | 0.344662 | 2_1:-10169205 | Msa0194280:CDS |
| AGAGACCTGCCCCAATTTAT+GGG | 0.348925 | 2_1:+10171732 | None:intergenic |
| GCATCATCCTTATTCTTTGT+CGG | 0.365447 | 2_1:-10171651 | Msa0194280:five_prime_UTR |
| TATCTCTAGTTAATTTAGAT+TGG | 0.367884 | 2_1:-10168949 | Msa0194280:three_prime_UTR |
| ACTCGGATCACCTGCTTAAC+CGG | 0.396444 | 2_1:+10170935 | None:intergenic |
| TCCTGCTGGTTCTGATCTCC+AGG | 0.406259 | 2_1:-10170227 | Msa0194280:CDS |
| ATTGTTCATAAAGAGTTTAG+AGG | 0.413252 | 2_1:-10169212 | Msa0194280:CDS |
| TTCTGATCTCCAGGCATTTG+TGG | 0.415818 | 2_1:-10170218 | Msa0194280:CDS |
| ATGTAATTTACTTTATGTTA+CGG | 0.424850 | 2_1:-10168864 | Msa0194280:three_prime_UTR |
| TTCTACTCCTTTAAGGAAAG+AGG | 0.436744 | 2_1:+10169082 | None:intergenic |
| ATGAACCCTGCAAGGAGCTT+AGG | 0.445185 | 2_1:-10169242 | Msa0194280:CDS |
| AGTAGATCCAACTGCAAGTC+CGG | 0.451623 | 2_1:+10169668 | None:intergenic |
| ACACTTAGGCTTATATTCAA+TGG | 0.454254 | 2_1:-10170277 | Msa0194280:CDS |
| GACAAAGTGGTAACACATCC+TGG | 0.456746 | 2_1:-10171073 | Msa0194280:CDS |
| CAAAAGGTTTCCGGTTAAGC+AGG | 0.462415 | 2_1:-10170945 | Msa0194280:intron |
| TAAGTGAGTTAGATTTATCA+AGG | 0.466276 | 2_1:-10169048 | Msa0194280:exon |
| CTCTTACTAATTTCACGCAC+TGG | 0.467398 | 2_1:+10169107 | None:intergenic |
| TTACATTCAAAACCATTTCG+TGG | 0.488661 | 2_1:+10171595 | None:intergenic |
| GCAAAAGAGGCACATAGTCT+TGG | 0.488743 | 2_1:+10171535 | None:intergenic |
| AGTCTTATAAAGAGGAAGGA+TGG | 0.488962 | 2_1:+10171763 | None:intergenic |
| ACAACTCTTGGTGCCATAGC+TGG | 0.490463 | 2_1:-10169167 | Msa0194280:CDS |
| AAGCAATGGAAACCACGAAA+TGG | 0.491267 | 2_1:-10171607 | Msa0194280:CDS |
| TTGGTGCCATAGCTGGTACA+TGG | 0.491349 | 2_1:-10169160 | Msa0194280:CDS |
| ATACACACCTTCTGCAAAAG+AGG | 0.497346 | 2_1:+10171522 | None:intergenic |
| TATTTGGTATCAACAACTCT+TGG | 0.500417 | 2_1:-10169179 | Msa0194280:CDS |
| AACTCTTTATGAACAATAGC+AGG | 0.503476 | 2_1:+10169218 | None:intergenic |
| TGCAGGGTGTGCTGCTGTTG+TGG | 0.511373 | 2_1:-10171110 | Msa0194280:CDS |
| TTGCTCATGCATCCACCAAA+AGG | 0.514247 | 2_1:-10170961 | Msa0194280:CDS |
| TATAAAGAGGAAGGATGGGA+TGG | 0.516676 | 2_1:+10171768 | None:intergenic |
| CCTGGGATTTCAATTGTTTG+GGG | 0.520676 | 2_1:-10171055 | Msa0194280:CDS |
| TGAATTCAACCACAAATGCC+TGG | 0.521494 | 2_1:+10170209 | None:intergenic |
| GTCTTATAAAGAGGAAGGAT+GGG | 0.525684 | 2_1:+10171764 | None:intergenic |
| GAGTGCCCATAAATTGGGGC+AGG | 0.526299 | 2_1:-10171737 | Msa0194280:five_prime_UTR |
| TTACCACTTTGTCATTGTCA+AGG | 0.527510 | 2_1:+10171083 | None:intergenic |
| GGAGATTACCGCTCTATTGT+CGG | 0.528942 | 2_1:+10170144 | None:intergenic |
| GTAGTTGGTAGCAGAGGTTG+TGG | 0.535028 | 2_1:-10171152 | Msa0194280:intron |
| CACTCAAAAGTCTTATAAAG+AGG | 0.535047 | 2_1:+10171755 | None:intergenic |
| TGGTGCCATAGCTGGTACAT+GGG | 0.538881 | 2_1:-10169159 | Msa0194280:CDS |
| TCGCAGATTGGTGAGTTGGC+CGG | 0.540241 | 2_1:-10169687 | Msa0194280:intron |
| ATAAAGAGGAAGGATGGGAT+GGG | 0.542417 | 2_1:+10171769 | None:intergenic |
| CAAAAGTCTTATAAAGAGGA+AGG | 0.550367 | 2_1:+10171759 | None:intergenic |
| CCCCAAACAATTGAAATCCC+AGG | 0.550515 | 2_1:+10171055 | None:intergenic |
| TATGTTCGTCATTTCTGGAG+TGG | 0.553193 | 2_1:-10170170 | Msa0194280:CDS |
| GCATGAGCAATGGTGACAGC+AGG | 0.555499 | 2_1:+10170974 | None:intergenic |
| TAGTTGGTAGCAGAGGTTGT+GGG | 0.558311 | 2_1:-10171151 | Msa0194280:CDS |
| AATATCGCAGATTGGTGAGT+TGG | 0.558536 | 2_1:-10169691 | Msa0194280:intron |
| GCACTGGCTTGTTTGTGTAC+CGG | 0.558893 | 2_1:+10169123 | None:intergenic |
| TAGGCTTATATTCAATGGCA+AGG | 0.559061 | 2_1:-10170272 | Msa0194280:CDS |
| ATATACATAACTAGAGGAAA+CGG | 0.565529 | 2_1:-10168912 | Msa0194280:three_prime_UTR |
| CATGGGCATATACTTTCATC+CGG | 0.565944 | 2_1:-10169142 | Msa0194280:CDS |
| CTTGGATCAACTCTTGCAAG+TGG | 0.567738 | 2_1:-10170301 | Msa0194280:CDS |
| CTTAAAGGAGTAGAAAATGG+TGG | 0.573302 | 2_1:-10169074 | Msa0194280:CDS |
| CGTACTTCTTGATATTTGCA+GGG | 0.575700 | 2_1:-10171126 | Msa0194280:CDS |
| GCCTGGAGATCAGAACCAGC+AGG | 0.579301 | 2_1:+10170226 | None:intergenic |
| ATATGCCCATGTACCAGCTA+TGG | 0.580208 | 2_1:+10169154 | None:intergenic |
| ACTTGAGATATTATATAAGC+CGG | 0.584944 | 2_1:+10170325 | None:intergenic |
| GAGTTGGCCGGACTTGCAGT+TGG | 0.596194 | 2_1:-10169675 | Msa0194280:CDS |
| GCTGATCATTCATCAAGCAA+TGG | 0.606516 | 2_1:-10171621 | Msa0194280:CDS |
| ACAAAGTGGTAACACATCCT+GGG | 0.613941 | 2_1:-10171072 | Msa0194280:CDS |
| GGAGCATAATGAACCCTGCA+AGG | 0.625076 | 2_1:-10169250 | Msa0194280:CDS |
| CAGGTCCTAAGCTCCTTGCA+GGG | 0.629880 | 2_1:+10169237 | None:intergenic |
| GTAACATAAAGTAAATTACA+TGG | 0.638499 | 2_1:+10168866 | None:intergenic |
| CTCTTGCAAGTGGAACACTT+AGG | 0.640873 | 2_1:-10170291 | Msa0194280:CDS |
| TATGTAATATACATAACTAG+AGG | 0.643201 | 2_1:-10168918 | Msa0194280:three_prime_UTR |
| TTGAATGTAGTTGGTAGCAG+AGG | 0.649135 | 2_1:-10171158 | Msa0194280:intron |
| AGTTGGTAGCAGAGGTTGTG+GGG | 0.653045 | 2_1:-10171150 | Msa0194280:CDS |
| TTTGGTGGATGCATGAGCAA+TGG | 0.663155 | 2_1:+10170964 | None:intergenic |
| GATTACCGCTCTATTGTCGG+TGG | 0.674328 | 2_1:+10170147 | None:intergenic |
| GATTTATCAAGGATTGCACG+AGG | 0.684895 | 2_1:-10169037 | Msa0194280:three_prime_UTR |
| GAACCTTGACAATGACAAAG+TGG | 0.704582 | 2_1:-10171086 | Msa0194280:CDS |
| AGTGGCCACCGACAATAGAG+CGG | 0.719424 | 2_1:-10170152 | Msa0194280:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTCAATAATTTTTTAGA+TGG | - | chr2_1:10169896-10169915 | Msa0194280:intron | 10.0% |
| !!! | AACAAATTTTTTATTTTCAA+CGG | + | chr2_1:10170576-10170595 | None:intergenic | 10.0% |
| !!! | TTTATTTTTCTTTTGAAAAT+TGG | - | chr2_1:10170819-10170838 | Msa0194280:intron | 10.0% |
| !!! | TTATTTTTCTTTTGAAAATT+GGG | - | chr2_1:10170820-10170839 | Msa0194280:intron | 10.0% |
| !! | ATATTGACAAAAAAAATAAA+AGG | + | chr2_1:10170926-10170945 | None:intergenic | 10.0% |
| !!! | ATCTTTGTTATTAAAGTATT+AGG | + | chr2_1:10169286-10169305 | None:intergenic | 15.0% |
| !!! | TACTTTAGAGATTAAATTAA+CGG | - | chr2_1:10169382-10169401 | Msa0194280:intron | 15.0% |
| !!! | GATATATGTGATTTTAAATA+TGG | - | chr2_1:10169413-10169432 | Msa0194280:intron | 15.0% |
| !! | GAGTATTTGTTTATATATAA+GGG | + | chr2_1:10170518-10170537 | None:intergenic | 15.0% |
| !!! | AGAGTATTTGTTTATATATA+AGG | + | chr2_1:10170519-10170538 | None:intergenic | 15.0% |
| !! | ATGTAATTTACTTTATGTTA+CGG | - | chr2_1:10171768-10171787 | Msa0194280:five_prime_UTR | 15.0% |
| !!! | TTGAAAATAATTTTCGCATA+TGG | + | chr2_1:10168815-10168834 | None:intergenic | 20.0% |
| !!! | GAATTTAATCTCTAAAGTAT+CGG | - | chr2_1:10169184-10169203 | Msa0194280:CDS | 20.0% |
| !! | GAATCAATGTTGAAATAAAA+TGG | - | chr2_1:10169435-10169454 | Msa0194280:intron | 20.0% |
| !!! | GAATATAGTTTTAAAGAACT+CGG | + | chr2_1:10169717-10169736 | None:intergenic | 20.0% |
| !! | AATGTATCTGATTCAAAATT+TGG | - | chr2_1:10169780-10169799 | Msa0194280:intron | 20.0% |
| !! | AAGAAAATATGATTGCTTTA+AGG | + | chr2_1:10169983-10170002 | None:intergenic | 20.0% |
| !! | CCATATTATGAATTCAAAAA+CGG | + | chr2_1:10170150-10170169 | None:intergenic | 20.0% |
| !! | TTTGGATAATATGCAAAAAA+TGG | + | chr2_1:10170215-10170234 | None:intergenic | 20.0% |
| !! | GTACAATTAAGTATACTATT+TGG | + | chr2_1:10170233-10170252 | None:intergenic | 20.0% |
| !! | TATATAATATCTCAAGTTCT+TGG | - | chr2_1:10170313-10170332 | Msa0194280:CDS | 20.0% |
| !! | ATAAACAAATACTCTTGTAT+TGG | - | chr2_1:10170524-10170543 | Msa0194280:intron | 20.0% |
| !! | ACATGTTAATGAATATAATG+TGG | - | chr2_1:10170790-10170809 | Msa0194280:intron | 20.0% |
| !! | TATCTCTAGTTAATTTAGAT+TGG | - | chr2_1:10171683-10171702 | Msa0194280:five_prime_UTR | 20.0% |
| !! | TATGTAATATACATAACTAG+AGG | - | chr2_1:10171714-10171733 | Msa0194280:five_prime_UTR | 20.0% |
| !! | GTAACATAAAGTAAATTACA+TGG | + | chr2_1:10171769-10171788 | None:intergenic | 20.0% |
| ! | TTCGCATATGGAAAATAAAT+TGG | + | chr2_1:10168803-10168822 | None:intergenic | 25.0% |
| !!! | GAAATGGTTTTGAATGTAAA+TGG | - | chr2_1:10169041-10169060 | Msa0194280:three_prime_UTR | 25.0% |
| ! | TGTATTATGTTGAATGTAGT+TGG | - | chr2_1:10169465-10169484 | Msa0194280:intron | 25.0% |
| !!! | CAATAATTTTTTAGATGGTG+TGG | - | chr2_1:10169901-10169920 | Msa0194280:intron | 25.0% |
| ! | AAATGACATAATATAGAGCA+TGG | + | chr2_1:10170110-10170129 | None:intergenic | 25.0% |
| !!! | CCGTTTTTGAATTCATAATA+TGG | - | chr2_1:10170147-10170166 | Msa0194280:intron | 25.0% |
| ! | GCAAAAAATGGAAAAAGTTT+AGG | + | chr2_1:10170203-10170222 | None:intergenic | 25.0% |
| ! | ACTTGAGATATTATATAAGC+CGG | + | chr2_1:10170310-10170329 | None:intergenic | 25.0% |
| ! | TTGTTTATATATAAGGGCAA+AGG | + | chr2_1:10170512-10170531 | None:intergenic | 25.0% |
| !! | TTCATTAACATGTGTTTCTA+AGG | + | chr2_1:10170783-10170802 | None:intergenic | 25.0% |
| !! | TTGAGGTTTGATTTATAGTT+AGG | + | chr2_1:10171023-10171042 | None:intergenic | 25.0% |
| !!! | TTCTCAATATGTTTAGTTTG+AGG | + | chr2_1:10171040-10171059 | None:intergenic | 25.0% |
| ! | TCTAACATTTACTCTCTTAT+TGG | + | chr2_1:10171188-10171207 | None:intergenic | 25.0% |
| ! | TAATCTTATTGAAGAACTCT+CGG | + | chr2_1:10171273-10171292 | None:intergenic | 25.0% |
| !! | AATCCTATATGTTTGTTAAC+AGG | - | chr2_1:10171350-10171369 | Msa0194280:intron | 25.0% |
| ! | ATTGTTCATAAAGAGTTTAG+AGG | - | chr2_1:10171420-10171439 | Msa0194280:intron | 25.0% |
| ! | ATAAAGAGTTTAGAGGAATA+TGG | - | chr2_1:10171427-10171446 | Msa0194280:intron | 25.0% |
| ! | TAGAGGAATATGGATATATT+TGG | - | chr2_1:10171437-10171456 | Msa0194280:intron | 25.0% |
| ! | TAAGTGAGTTAGATTTATCA+AGG | - | chr2_1:10171584-10171603 | Msa0194280:CDS | 25.0% |
| ! | ATATACATAACTAGAGGAAA+CGG | - | chr2_1:10171720-10171739 | Msa0194280:five_prime_UTR | 25.0% |
| !!! | TCGATTTTTTCATCGAATTA+TGG | - | chr2_1:10171809-10171828 | Msa0194280:five_prime_UTR | 25.0% |
| !!! | CGATTTTTTCATCGAATTAT+GGG | - | chr2_1:10171810-10171829 | Msa0194280:five_prime_UTR | 25.0% |
| ! | CAAAAGTCTTATAAAGAGGA+AGG | + | chr2_1:10168876-10168895 | None:intergenic | 30.0% |
| ! | CACTCAAAAGTCTTATAAAG+AGG | + | chr2_1:10168880-10168899 | None:intergenic | 30.0% |
| TTACATTCAAAACCATTTCG+TGG | + | chr2_1:10169040-10169059 | None:intergenic | 30.0% | |
| CAAAAAAGTTCTATGTAGAG+TGG | + | chr2_1:10169144-10169163 | None:intergenic | 30.0% | |
| TGCTTTATATGCGAAAAAGT+TGG | - | chr2_1:10169744-10169763 | Msa0194280:intron | 30.0% | |
| GCTTTATATGCGAAAAAGTT+GGG | - | chr2_1:10169745-10169764 | Msa0194280:intron | 30.0% | |
| AATCCATATGCTTCAAAGTT+GGG | + | chr2_1:10169830-10169849 | None:intergenic | 30.0% | |
| TAATCCATATGCTTCAAAGT+TGG | + | chr2_1:10169831-10169850 | None:intergenic | 30.0% | |
| AAAACGGTTGCATACATATA+CGG | + | chr2_1:10170134-10170153 | None:intergenic | 30.0% | |
| GGAAGAGAAATTTCAATTGA+AGG | + | chr2_1:10170182-10170201 | None:intergenic | 30.0% | |
| TCTTCAATCTATAATCTTGC+AGG | - | chr2_1:10170282-10170301 | Msa0194280:CDS | 30.0% | |
| ACACTTAGGCTTATATTCAA+TGG | - | chr2_1:10170355-10170374 | Msa0194280:intron | 30.0% | |
| TATCTTATGTTCGTCATTTC+TGG | - | chr2_1:10170457-10170476 | Msa0194280:intron | 30.0% | |
| AATTGCAAATATGTCACAAG+TGG | - | chr2_1:10170665-10170684 | Msa0194280:intron | 30.0% | |
| ! | ACAATAGTGTTGAAGATTGA+TGG | + | chr2_1:10170721-10170740 | None:intergenic | 30.0% |
| ! | TTTTTGTCAATATCGCAGAT+TGG | - | chr2_1:10170933-10170952 | Msa0194280:intron | 30.0% |
| CTTCTAAATGTTATGTTTGC+CGG | - | chr2_1:10170990-10171009 | Msa0194280:CDS | 30.0% | |
| TTCTAAATGTTATGTTTGCC+GGG | - | chr2_1:10170991-10171010 | Msa0194280:CDS | 30.0% | |
| TTTATAGTTAGGTTCATACC+CGG | + | chr2_1:10171012-10171031 | None:intergenic | 30.0% | |
| TAACAATCACTCTCTTATTG+AGG | - | chr2_1:10171093-10171112 | Msa0194280:CDS | 30.0% | |
| AACAATCACTCTCTTATTGA+GGG | - | chr2_1:10171094-10171113 | Msa0194280:CDS | 30.0% | |
| TTATTGGATCAAACTCACAT+GGG | + | chr2_1:10171172-10171191 | None:intergenic | 30.0% | |
| TAAGAGAGTAAATGTTAGAG+AGG | - | chr2_1:10171189-10171208 | Msa0194280:intron | 30.0% | |
| TAGAGAGGACATTAGAAAAA+AGG | - | chr2_1:10171204-10171223 | Msa0194280:intron | 30.0% | |
| CATTCCTCAAATATAGTTAG+TGG | - | chr2_1:10171236-10171255 | Msa0194280:intron | 30.0% | |
| AACTCTTTATGAACAATAGC+AGG | + | chr2_1:10171417-10171436 | None:intergenic | 30.0% | |
| TATTTGGTATCAACAACTCT+TGG | - | chr2_1:10171453-10171472 | Msa0194280:intron | 30.0% | |
| TTCCTTAAAGGAGTAGAAAA+TGG | - | chr2_1:10171555-10171574 | Msa0194280:CDS | 30.0% | |
| GTCTTATAAAGAGGAAGGAT+GGG | + | chr2_1:10168871-10168890 | None:intergenic | 35.0% | |
| ! | AGTCTTATAAAGAGGAAGGA+TGG | + | chr2_1:10168872-10168891 | None:intergenic | 35.0% |
| !! | ACTTTTGAGTGCCCATAAAT+TGG | - | chr2_1:10168889-10168908 | Msa0194280:three_prime_UTR | 35.0% |
| !! | CTTTTGAGTGCCCATAAATT+GGG | - | chr2_1:10168890-10168909 | Msa0194280:three_prime_UTR | 35.0% |
| !! | TTTTGAGTGCCCATAAATTG+GGG | - | chr2_1:10168891-10168910 | Msa0194280:three_prime_UTR | 35.0% |
| GCATCATCCTTATTCTTTGT+CGG | - | chr2_1:10168981-10169000 | Msa0194280:three_prime_UTR | 35.0% | |
| CATATCACCGACAAAGAATA+AGG | + | chr2_1:10168991-10169010 | None:intergenic | 35.0% | |
| CTTATTCTTTGTCGGTGATA+TGG | - | chr2_1:10168989-10169008 | Msa0194280:three_prime_UTR | 35.0% | |
| AGTTCTATGTAGAGTGGTTT+AGG | + | chr2_1:10169138-10169157 | None:intergenic | 35.0% | |
| ACGTACTTCTTGATATTTGC+AGG | - | chr2_1:10169505-10169524 | Msa0194280:intron | 35.0% | |
| CGTACTTCTTGATATTTGCA+GGG | - | chr2_1:10169506-10169525 | Msa0194280:intron | 35.0% | |
| TTACCACTTTGTCATTGTCA+AGG | + | chr2_1:10169552-10169571 | None:intergenic | 35.0% | |
| ATCCTGGGATTTCAATTGTT+TGG | - | chr2_1:10169575-10169594 | Msa0194280:intron | 35.0% | |
| TCCTGGGATTTCAATTGTTT+GGG | - | chr2_1:10169576-10169595 | Msa0194280:intron | 35.0% | |
| !!! | ATGGTTTTGGTTTACTCTGT+TGG | - | chr2_1:10169610-10169629 | Msa0194280:intron | 35.0% |
| ATCTATAATCTTGCAGGTAC+CGG | - | chr2_1:10170288-10170307 | Msa0194280:CDS | 35.0% | |
| TAGGCTTATATTCAATGGCA+AGG | - | chr2_1:10170360-10170379 | Msa0194280:intron | 35.0% | |
| AAATATGTCACAAGTGGACA+TGG | - | chr2_1:10170671-10170690 | Msa0194280:intron | 35.0% | |
| AATATGTCACAAGTGGACAT+GGG | - | chr2_1:10170672-10170691 | Msa0194280:intron | 35.0% | |
| ! | CATATTAACACGTGTCGTTA+AGG | + | chr2_1:10170902-10170921 | None:intergenic | 35.0% |
| CTTATTGGATCAAACTCACA+TGG | + | chr2_1:10171173-10171192 | None:intergenic | 35.0% | |
| GTGTCCACTAACTATATTTG+AGG | + | chr2_1:10171243-10171262 | None:intergenic | 35.0% | |
| TGGCCTGTTAACAAACATAT+AGG | + | chr2_1:10171356-10171375 | None:intergenic | 35.0% | |
| TTTGTTAACAGGCCAATTAC+TGG | - | chr2_1:10171361-10171380 | Msa0194280:intron | 35.0% | |
| GTTCATTATGCTCCAGTAAT+TGG | + | chr2_1:10171376-10171395 | None:intergenic | 35.0% | |
| ! | TTCTACTCCTTTAAGGAAAG+AGG | + | chr2_1:10171553-10171572 | None:intergenic | 35.0% |
| ! | CACCATTTTCTACTCCTTTA+AGG | + | chr2_1:10171560-10171579 | None:intergenic | 35.0% |
| CTTAAAGGAGTAGAAAATGG+TGG | - | chr2_1:10171558-10171577 | Msa0194280:CDS | 35.0% | |
| ATAAAGAGGAAGGATGGGAT+GGG | + | chr2_1:10168866-10168885 | None:intergenic | 40.0% | |
| TATAAAGAGGAAGGATGGGA+TGG | + | chr2_1:10168867-10168886 | None:intergenic | 40.0% | |
| GCTGATCATTCATCAAGCAA+TGG | - | chr2_1:10169011-10169030 | Msa0194280:three_prime_UTR | 40.0% | |
| AAGCAATGGAAACCACGAAA+TGG | - | chr2_1:10169025-10169044 | Msa0194280:three_prime_UTR | 40.0% | |
| ! | GCATGACTCATCACACTTTT+GGG | + | chr2_1:10169075-10169094 | None:intergenic | 40.0% |
| ! | TGCATGACTCATCACACTTT+TGG | + | chr2_1:10169076-10169095 | None:intergenic | 40.0% |
| ATACACACCTTCTGCAAAAG+AGG | + | chr2_1:10169113-10169132 | None:intergenic | 40.0% | |
| !! | TTGAATGTAGTTGGTAGCAG+AGG | - | chr2_1:10169474-10169493 | Msa0194280:intron | 40.0% |
| GAACCTTGACAATGACAAAG+TGG | - | chr2_1:10169546-10169565 | Msa0194280:intron | 40.0% | |
| ACAAAGTGGTAACACATCCT+GGG | - | chr2_1:10169560-10169579 | Msa0194280:intron | 40.0% | |
| CCTGGGATTTCAATTGTTTG+GGG | - | chr2_1:10169577-10169596 | Msa0194280:intron | 40.0% | |
| TACTCTGTTGGTCACATTTC+TGG | - | chr2_1:10169622-10169641 | Msa0194280:intron | 40.0% | |
| TTCGCATATAAAGCACACGA+CGG | + | chr2_1:10169739-10169758 | None:intergenic | 40.0% | |
| !! | TGACCCAACTTTGAAGCATA+TGG | - | chr2_1:10169824-10169843 | Msa0194280:intron | 40.0% |
| GATGTTATGCGTGACTATGA+TGG | - | chr2_1:10169866-10169885 | Msa0194280:intron | 40.0% | |
| !! | GGCAAGGAAAACCATTTTTC+AGG | - | chr2_1:10170376-10170395 | Msa0194280:intron | 40.0% |
| !! | CAGGAAGTGTTCCTGAAAAA+TGG | + | chr2_1:10170390-10170409 | None:intergenic | 40.0% |
| TGAATTCAACCACAAATGCC+TGG | + | chr2_1:10170426-10170445 | None:intergenic | 40.0% | |
| ! | TATGTTCGTCATTTCTGGAG+TGG | - | chr2_1:10170462-10170481 | Msa0194280:intron | 40.0% |
| AATATCGCAGATTGGTGAGT+TGG | - | chr2_1:10170941-10170960 | Msa0194280:intron | 40.0% | |
| TCTTATTGAGGGAACTCATG+TGG | - | chr2_1:10171105-10171124 | Msa0194280:CDS | 40.0% | |
| GAATTGGGTATCACCTAAAG+TGG | + | chr2_1:10171137-10171156 | None:intergenic | 40.0% | |
| CATGTCGTCACAATTCAGTT+TGG | - | chr2_1:10171297-10171316 | Msa0194280:intron | 40.0% | |
| CATGGGCATATACTTTCATC+CGG | - | chr2_1:10171490-10171509 | Msa0194280:intron | 40.0% | |
| CTCTTACTAATTTCACGCAC+TGG | + | chr2_1:10171528-10171547 | None:intergenic | 40.0% | |
| !! | AAGAGTGCCTCTTTCCTTAA+AGG | - | chr2_1:10171543-10171562 | Msa0194280:CDS | 40.0% |
| GATTTATCAAGGATTGCACG+AGG | - | chr2_1:10171595-10171614 | Msa0194280:CDS | 40.0% | |
| AGAGACCTGCCCCAATTTAT+GGG | + | chr2_1:10168903-10168922 | None:intergenic | 45.0% | |
| AAGAGACCTGCCCCAATTTA+TGG | + | chr2_1:10168904-10168923 | None:intergenic | 45.0% | |
| ! | GCAAAAGAGGCACATAGTCT+TGG | + | chr2_1:10169100-10169119 | None:intergenic | 45.0% |
| ! | CTATGTGCCTCTTTTGCAGA+AGG | - | chr2_1:10169103-10169122 | Msa0194280:CDS | 45.0% |
| !! | TAGTTGGTAGCAGAGGTTGT+GGG | - | chr2_1:10169481-10169500 | Msa0194280:intron | 45.0% |
| GACAAAGTGGTAACACATCC+TGG | - | chr2_1:10169559-10169578 | Msa0194280:intron | 45.0% | |
| CCCCAAACAATTGAAATCCC+AGG | + | chr2_1:10169580-10169599 | None:intergenic | 45.0% | |
| ! | TGTTTGGGGTCTCACTGTTA+TGG | - | chr2_1:10169591-10169610 | Msa0194280:intron | 45.0% |
| ! | GGGTCTCACTGTTATGGTTT+TGG | - | chr2_1:10169597-10169616 | Msa0194280:intron | 45.0% |
| ! | TTTGGTGGATGCATGAGCAA+TGG | + | chr2_1:10169671-10169690 | None:intergenic | 45.0% |
| TTGCTCATGCATCCACCAAA+AGG | - | chr2_1:10169671-10169690 | Msa0194280:CDS | 45.0% | |
| TGCATCCACCAAAAGGTTTC+CGG | - | chr2_1:10169678-10169697 | Msa0194280:CDS | 45.0% | |
| ! | CTTAACCGGAAACCTTTTGG+TGG | + | chr2_1:10169686-10169705 | None:intergenic | 45.0% |
| ! | CTGCTTAACCGGAAACCTTT+TGG | + | chr2_1:10169689-10169708 | None:intergenic | 45.0% |
| CAAAAGGTTTCCGGTTAAGC+AGG | - | chr2_1:10169687-10169706 | Msa0194280:intron | 45.0% | |
| CTTGGATCAACTCTTGCAAG+TGG | - | chr2_1:10170331-10170350 | Msa0194280:CDS | 45.0% | |
| CTCTTGCAAGTGGAACACTT+AGG | - | chr2_1:10170341-10170360 | Msa0194280:intron | 45.0% | |
| !! | TTTTCAGGAACACTTCCTGC+TGG | - | chr2_1:10170391-10170410 | Msa0194280:intron | 45.0% |
| TTCTGATCTCCAGGCATTTG+TGG | - | chr2_1:10170414-10170433 | Msa0194280:intron | 45.0% | |
| GGAGATTACCGCTCTATTGT+CGG | + | chr2_1:10170491-10170510 | None:intergenic | 45.0% | |
| AGTAGATCCAACTGCAAGTC+CGG | + | chr2_1:10170967-10170986 | None:intergenic | 45.0% | |
| CATGTGGATCACACCACTTT+AGG | - | chr2_1:10171121-10171140 | Msa0194280:CDS | 45.0% | |
| !! | GGGTCTCACACTTTGGAATT+GGG | + | chr2_1:10171152-10171171 | None:intergenic | 45.0% |
| !! | TGGGTCTCACACTTTGGAAT+TGG | + | chr2_1:10171153-10171172 | None:intergenic | 45.0% |
| ATATGCCCATGTACCAGCTA+TGG | + | chr2_1:10171481-10171500 | None:intergenic | 45.0% | |
| !! | GTAGTTGGTAGCAGAGGTTG+TGG | - | chr2_1:10169480-10169499 | Msa0194280:intron | 50.0% |
| !! | AGTTGGTAGCAGAGGTTGTG+GGG | - | chr2_1:10169482-10169501 | Msa0194280:intron | 50.0% |
| ACTCGGATCACCTGCTTAAC+CGG | + | chr2_1:10169700-10169719 | None:intergenic | 50.0% | |
| GATTACCGCTCTATTGTCGG+TGG | + | chr2_1:10170488-10170507 | None:intergenic | 50.0% | |
| CTCACATGGGTCTCACACTT+TGG | + | chr2_1:10171159-10171178 | None:intergenic | 50.0% | |
| GGAGCATAATGAACCCTGCA+AGG | - | chr2_1:10171382-10171401 | Msa0194280:intron | 50.0% | |
| ATGAACCCTGCAAGGAGCTT+AGG | - | chr2_1:10171390-10171409 | Msa0194280:intron | 50.0% | |
| !! | ACAACTCTTGGTGCCATAGC+TGG | - | chr2_1:10171465-10171484 | Msa0194280:intron | 50.0% |
| !! | TTGGTGCCATAGCTGGTACA+TGG | - | chr2_1:10171472-10171491 | Msa0194280:intron | 50.0% |
| !! | TGGTGCCATAGCTGGTACAT+GGG | - | chr2_1:10171473-10171492 | Msa0194280:intron | 50.0% |
| !! | GCACTGGCTTGTTTGTGTAC+CGG | + | chr2_1:10171512-10171531 | None:intergenic | 50.0% |
| GAGTGCCCATAAATTGGGGC+AGG | - | chr2_1:10168895-10168914 | Msa0194280:three_prime_UTR | 55.0% | |
| GCATGAGCAATGGTGACAGC+AGG | + | chr2_1:10169661-10169680 | None:intergenic | 55.0% | |
| !! | TCCTGCTGGTTCTGATCTCC+AGG | - | chr2_1:10170405-10170424 | Msa0194280:intron | 55.0% |
| AGTGGCCACCGACAATAGAG+CGG | - | chr2_1:10170480-10170499 | Msa0194280:intron | 55.0% | |
| ! | TCGCAGATTGGTGAGTTGGC+CGG | - | chr2_1:10170945-10170964 | Msa0194280:intron | 55.0% |
| CAGGTCCTAAGCTCCTTGCA+GGG | + | chr2_1:10171398-10171417 | None:intergenic | 55.0% | |
| ! | TGCAGGGTGTGCTGCTGTTG+TGG | - | chr2_1:10169522-10169541 | Msa0194280:intron | 60.0% |
| GCCTGGAGATCAGAACCAGC+AGG | + | chr2_1:10170409-10170428 | None:intergenic | 60.0% | |
| GAGTTGGCCGGACTTGCAGT+TGG | - | chr2_1:10170957-10170976 | Msa0194280:CDS | 60.0% | |
| GCAGGTCCTAAGCTCCTTGC+AGG | + | chr2_1:10171399-10171418 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 10168791 | 10171863 | 10168791 | ID=Msa0194280;Name=Msa0194280 |
| chr2_1 | mRNA | 10168791 | 10171863 | 10168791 | ID=Msa0194280-mRNA-1;Parent=Msa0194280;Name=Msa0194280-mRNA-1;_AED=0.12;_eAED=0.12;_QI=217|0.75|0.8|1|1|1|5|273|268 |
| chr2_1 | exon | 10168791 | 10169282 | 10168791 | ID=Msa0194280-mRNA-1:exon:4641;Parent=Msa0194280-mRNA-1 |
| chr2_1 | exon | 10169656 | 10169703 | 10169656 | ID=Msa0194280-mRNA-1:exon:4640;Parent=Msa0194280-mRNA-1 |
| chr2_1 | exon | 10170153 | 10170350 | 10170153 | ID=Msa0194280-mRNA-1:exon:4639;Parent=Msa0194280-mRNA-1 |
| chr2_1 | exon | 10170946 | 10171170 | 10170946 | ID=Msa0194280-mRNA-1:exon:4638;Parent=Msa0194280-mRNA-1 |
| chr2_1 | exon | 10171530 | 10171863 | 10171530 | ID=Msa0194280-mRNA-1:exon:4637;Parent=Msa0194280-mRNA-1 |
| chr2_1 | five_prime_UTR | 10171647 | 10171863 | 10171647 | ID=Msa0194280-mRNA-1:five_prime_utr;Parent=Msa0194280-mRNA-1 |
| chr2_1 | CDS | 10171530 | 10171646 | 10171530 | ID=Msa0194280-mRNA-1:cds;Parent=Msa0194280-mRNA-1 |
| chr2_1 | CDS | 10170946 | 10171170 | 10170946 | ID=Msa0194280-mRNA-1:cds;Parent=Msa0194280-mRNA-1 |
| chr2_1 | CDS | 10170153 | 10170350 | 10170153 | ID=Msa0194280-mRNA-1:cds;Parent=Msa0194280-mRNA-1 |
| chr2_1 | CDS | 10169656 | 10169703 | 10169656 | ID=Msa0194280-mRNA-1:cds;Parent=Msa0194280-mRNA-1 |
| chr2_1 | CDS | 10169064 | 10169282 | 10169064 | ID=Msa0194280-mRNA-1:cds;Parent=Msa0194280-mRNA-1 |
| chr2_1 | three_prime_UTR | 10168791 | 10169063 | 10168791 | ID=Msa0194280-mRNA-1:three_prime_utr;Parent=Msa0194280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
