Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235980 | XP_003593786.1 | 97.802 | 273 | 6 | 0 | 1 | 273 | 1 | 273 | 0.0 | 547 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235980 | sp|Q8LFP7|NIP12_ARATH | 70.980 | 255 | 67 | 1 | 26 | 273 | 40 | 294 | 3.69e-130 | 373 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235980 | G7ILK7 | 97.802 | 273 | 6 | 0 | 1 | 273 | 1 | 273 | 0.0 | 547 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032840 | Msa0235980 | -0.829755 | 4.310936e-55 | -8.615850e-47 |
| Msa0073670 | Msa0235980 | 0.827858 | 1.240178e-54 | -8.615850e-47 |
| Msa0096670 | Msa0235980 | 0.807231 | 5.592169e-50 | -8.615850e-47 |
| Msa0114540 | Msa0235980 | -0.825949 | 3.547024e-54 | -8.615850e-47 |
| Msa0137150 | Msa0235980 | 0.802422 | 5.653404e-49 | -8.615850e-47 |
| Msa0143080 | Msa0235980 | 0.834624 | 2.691366e-56 | -8.615850e-47 |
| Msa0172350 | Msa0235980 | 0.818947 | 1.501974e-52 | -8.615850e-47 |
| Msa0172960 | Msa0235980 | -0.803058 | 4.178181e-49 | -8.615850e-47 |
| Msa0183620 | Msa0235980 | 0.806500 | 7.981006e-50 | -8.615850e-47 |
| Msa0194280 | Msa0235980 | 0.950078 | 3.454616e-108 | -8.615850e-47 |
| Msa0194970 | Msa0235980 | 0.813628 | 2.324608e-51 | -8.615850e-47 |
| Msa0199710 | Msa0235980 | 0.800746 | 1.247075e-48 | -8.615850e-47 |
| Msa0230550 | Msa0235980 | -0.827382 | 1.613812e-54 | -8.615850e-47 |
| Msa0235980 | Msa0236980 | 0.832443 | 9.428335e-56 | -8.615850e-47 |
| Msa0235980 | Msa0259560 | 0.826458 | 2.682582e-54 | -8.615850e-47 |
| Msa0235980 | Msa0267760 | 0.817198 | 3.733442e-52 | -8.615850e-47 |
| Msa0235980 | Msa0274290 | 0.931556 | 3.173048e-94 | -8.615850e-47 |
| Msa0235980 | Msa0314480 | 0.980402 | 3.900126e-150 | -8.615850e-47 |
| Msa0235980 | Msa0328210 | 0.824966 | 6.061245e-54 | -8.615850e-47 |
| Msa0235980 | Msa0378340 | 0.812502 | 4.105415e-51 | -8.615850e-47 |
| Msa0235980 | Msa0402820 | 0.805575 | 1.249574e-49 | -8.615850e-47 |
| Msa0235980 | Msa0418220 | 0.813483 | 2.501303e-51 | -8.615850e-47 |
| Msa0235980 | Msa0427690 | 0.812786 | 3.558004e-51 | -8.615850e-47 |
| Msa0235980 | Msa0436280 | -0.809273 | 2.053094e-50 | -8.615850e-47 |
| Msa0235980 | Msa0464630 | 0.805538 | 1.271775e-49 | -8.615850e-47 |
| Msa0235980 | Msa0469910 | -0.803256 | 3.802329e-49 | -8.615850e-47 |
| Msa0235980 | Msa0497420 | 0.811426 | 7.042863e-51 | -8.615850e-47 |
| Msa0235980 | Msa0518520 | 0.812379 | 4.367548e-51 | -8.615850e-47 |
| Msa0235980 | Msa0526710 | 0.808192 | 3.494371e-50 | -8.615850e-47 |
| Msa0235980 | Msa0537920 | 0.808176 | 3.522844e-50 | -8.615850e-47 |
| Msa0235980 | Msa0560470 | 0.805604 | 1.232322e-49 | -8.615850e-47 |
| Msa0235980 | Msa0574890 | 0.805992 | 1.021255e-49 | -8.615850e-47 |
| Msa0235980 | Msa0590680 | 0.815180 | 1.054958e-51 | -8.615850e-47 |
| Msa0235980 | Msa0639120 | 0.802085 | 6.631140e-49 | -8.615850e-47 |
| Msa0235980 | Msa0642650 | 0.803650 | 3.151001e-49 | -8.615850e-47 |
| Msa0235980 | Msa0669850 | 0.806600 | 7.601513e-50 | -8.615850e-47 |
| Msa0235980 | Msa0678860 | 0.802323 | 5.923213e-49 | -8.615850e-47 |
| Msa0235980 | Msa0687000 | 0.813157 | 2.950955e-51 | -8.615850e-47 |
| Msa0235980 | Msa0696620 | 0.802913 | 4.475831e-49 | -8.615850e-47 |
| Msa0235980 | Msa0712310 | 0.803610 | 3.211491e-49 | -8.615850e-47 |
| Msa0235980 | Msa0761580 | 0.811136 | 8.139554e-51 | -8.615850e-47 |
| Msa0235980 | Msa0787750 | 0.835635 | 1.495944e-56 | -8.615850e-47 |
| Msa0235980 | Msa0797120 | 0.804491 | 2.105878e-49 | -8.615850e-47 |
| Msa0235980 | Msa0830990 | 0.812823 | 3.492830e-51 | -8.615850e-47 |
| Msa0235980 | Msa0840850 | -0.807908 | 4.016497e-50 | -8.615850e-47 |
| Msa0235980 | Msa0846030 | 0.809850 | 1.543307e-50 | -8.615850e-47 |
| Msa0235980 | Msa0872310 | 0.824773 | 6.729267e-54 | -8.615850e-47 |
| Msa0235980 | Msa0877420 | 0.812230 | 4.707482e-51 | -8.615850e-47 |
| Msa0235980 | Msa0896220 | 0.802977 | 4.342266e-49 | -8.615850e-47 |
| Msa0235980 | Msa0905550 | 0.801584 | 8.403640e-49 | -8.615850e-47 |
| Msa0235980 | Msa0922540 | 0.817236 | 3.660595e-52 | -8.615850e-47 |
| Msa0235980 | Msa0930780 | 0.825955 | 3.534742e-54 | -8.615850e-47 |
| Msa0235980 | Msa0936340 | 0.810859 | 9.346733e-51 | -8.615850e-47 |
| Msa0235980 | Msa0937550 | 0.815722 | 7.992892e-52 | -8.615850e-47 |
| Msa0235980 | Msa0955300 | 0.804202 | 2.419011e-49 | -8.615850e-47 |
| Msa0235980 | Msa0979550 | 0.814996 | 1.159225e-51 | -8.615850e-47 |
| Msa0235980 | Msa0996080 | 0.821191 | 4.603372e-53 | -8.615850e-47 |
| Msa0235980 | Msa1008060 | -0.800769 | 1.233939e-48 | -8.615850e-47 |
| Msa0235980 | Msa1013770 | 0.803664 | 3.129550e-49 | -8.615850e-47 |
| Msa0235980 | Msa1014270 | 0.822940 | 1.809817e-53 | -8.615850e-47 |
| Msa0235980 | Msa1018050 | 0.801526 | 8.638173e-49 | -8.615850e-47 |
| Msa0235980 | Msa1041530 | 0.803232 | 3.845935e-49 | -8.615850e-47 |
| Msa0235980 | Msa1044340 | 0.800769 | 1.233793e-48 | -8.615850e-47 |
| Msa0235980 | Msa1049510 | -0.805375 | 1.375945e-49 | -8.615850e-47 |
| Msa0235980 | Msa1055260 | 0.800523 | 1.384867e-48 | -8.615850e-47 |
| Msa0235980 | Msa1123880 | 0.827470 | 1.536869e-54 | -8.615850e-47 |
| Msa0235980 | Msa1133710 | 0.806621 | 7.527159e-50 | -8.615850e-47 |
| Msa0235980 | Msa1134110 | 0.802776 | 4.777100e-49 | -8.615850e-47 |
| Msa0235980 | Msa1165870 | 0.807708 | 4.430399e-50 | -8.615850e-47 |
| Msa0235980 | Msa1211090 | 0.814749 | 1.314809e-51 | -8.615850e-47 |
| Msa0235980 | Msa1218280 | -0.800669 | 1.293414e-48 | -8.615850e-47 |
| Msa0235980 | Msa1237030 | 0.824545 | 7.617776e-54 | -8.615850e-47 |
| Msa0235980 | Msa1269580 | -0.802122 | 6.516642e-49 | -8.615850e-47 |
| Msa0235980 | Msa1305740 | 0.812164 | 4.866129e-51 | -8.615850e-47 |
| Msa0235980 | Msa1323060 | 0.806325 | 8.690015e-50 | -8.615850e-47 |
| Msa0235980 | Msa1367880 | 0.805021 | 1.632391e-49 | -8.615850e-47 |
| Msa0235980 | Msa1373510 | 0.830699 | 2.535395e-55 | -8.615850e-47 |
| Msa0235980 | Msa1382410 | 0.819558 | 1.090694e-52 | -8.615850e-47 |
| Msa0235980 | Msa1382720 | 0.827131 | 1.853567e-54 | -8.615850e-47 |
| Msa0235980 | Msa1390310 | 0.824222 | 9.070995e-54 | -8.615850e-47 |
| Msa0235980 | Msa1414930 | 0.800261 | 1.565804e-48 | -8.615850e-47 |
| Msa0235980 | Msa1429360 | -0.808906 | 2.459891e-50 | -8.615850e-47 |
| Msa0235980 | Msa1444450 | 0.803219 | 3.869577e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235980 | MtrunA17_Chr2g0284581 | 97.802 | 273 | 6 | 0 | 1 | 273 | 1 | 273 | 0.0 | 547 |
| Msa0235980 | MtrunA17_Chr2g0284591 | 81.061 | 264 | 50 | 0 | 7 | 270 | 5 | 268 | 4.14e-163 | 453 |
| Msa0235980 | MtrunA17_Chr2g0284601 | 97.727 | 220 | 5 | 0 | 54 | 273 | 6 | 225 | 4.90e-157 | 436 |
| Msa0235980 | MtrunA17_Chr2g0284611 | 78.195 | 266 | 58 | 0 | 1 | 266 | 1 | 266 | 2.59e-154 | 431 |
| Msa0235980 | MtrunA17_Chr8g0379911 | 76.493 | 268 | 63 | 0 | 1 | 268 | 1 | 268 | 8.06e-153 | 427 |
| Msa0235980 | MtrunA17_Chr8g0379901 | 70.480 | 271 | 80 | 0 | 3 | 273 | 4 | 274 | 2.13e-142 | 401 |
| Msa0235980 | MtrunA17_Chr2g0284631 | 69.853 | 272 | 75 | 2 | 1 | 265 | 53 | 324 | 7.24e-141 | 399 |
| Msa0235980 | MtrunA17_Chr4g0044201 | 55.967 | 243 | 92 | 2 | 32 | 272 | 29 | 258 | 1.62e-94 | 279 |
| Msa0235980 | MtrunA17_Chr5g0435051 | 49.612 | 258 | 121 | 3 | 1 | 253 | 1 | 254 | 7.93e-85 | 254 |
| Msa0235980 | MtrunA17_Chr3g0079421 | 53.556 | 239 | 108 | 2 | 18 | 256 | 8 | 243 | 5.06e-84 | 252 |
| Msa0235980 | MtrunA17_Chr4g0001221 | 50.840 | 238 | 108 | 3 | 34 | 265 | 71 | 305 | 1.96e-70 | 219 |
| Msa0235980 | MtrunA17_Chr7g0217331 | 47.085 | 223 | 115 | 2 | 31 | 251 | 28 | 249 | 6.68e-69 | 214 |
| Msa0235980 | MtrunA17_Chr2g0333771 | 51.163 | 215 | 100 | 2 | 36 | 248 | 78 | 289 | 1.28e-67 | 212 |
| Msa0235980 | MtrunA17_Chr5g0426131 | 45.522 | 268 | 129 | 7 | 1 | 260 | 1 | 259 | 4.75e-67 | 209 |
| Msa0235980 | MtrunA17_Chr1g0201331 | 46.800 | 250 | 114 | 4 | 26 | 259 | 54 | 300 | 2.56e-66 | 208 |
| Msa0235980 | MtrunA17_Chr1g0184541 | 39.535 | 215 | 129 | 1 | 38 | 252 | 62 | 275 | 1.37e-47 | 160 |
| Msa0235980 | MtrunA17_Chr4g0001111 | 50.667 | 150 | 69 | 2 | 34 | 181 | 71 | 217 | 9.46e-37 | 130 |
| Msa0235980 | MtrunA17_Chr4g0001161 | 47.518 | 141 | 69 | 2 | 51 | 189 | 1 | 138 | 1.27e-29 | 109 |
| Msa0235980 | MtrunA17_Chr8g0340161 | 32.850 | 207 | 132 | 3 | 37 | 236 | 18 | 224 | 1.18e-25 | 101 |
| Msa0235980 | MtrunA17_Chr4g0001121 | 49.462 | 93 | 43 | 1 | 177 | 265 | 6 | 98 | 2.42e-25 | 96.7 |
| Msa0235980 | MtrunA17_Chr1g0188771 | 32.218 | 239 | 144 | 6 | 26 | 253 | 12 | 243 | 4.29e-24 | 97.8 |
| Msa0235980 | MtrunA17_Chr2g0331261 | 30.568 | 229 | 150 | 5 | 37 | 256 | 19 | 247 | 7.35e-23 | 94.4 |
| Msa0235980 | MtrunA17_Chr5g0399341 | 33.913 | 230 | 141 | 7 | 37 | 256 | 18 | 246 | 1.21e-22 | 93.6 |
| Msa0235980 | MtrunA17_Chr1g0146161 | 32.143 | 224 | 136 | 7 | 19 | 236 | 7 | 220 | 4.20e-22 | 92.0 |
| Msa0235980 | MtrunA17_Chr6g0478191 | 29.583 | 240 | 153 | 6 | 24 | 253 | 10 | 243 | 6.17e-22 | 92.0 |
| Msa0235980 | MtrunA17_Chr1g0146171 | 32.000 | 250 | 150 | 9 | 19 | 258 | 7 | 246 | 2.87e-21 | 90.1 |
| Msa0235980 | MtrunA17_Chr4g0001151 | 42.857 | 133 | 56 | 3 | 51 | 181 | 1 | 115 | 9.73e-20 | 87.0 |
| Msa0235980 | MtrunA17_Chr4g0030861 | 32.159 | 227 | 140 | 7 | 43 | 256 | 26 | 251 | 2.08e-17 | 79.3 |
| Msa0235980 | MtrunA17_Chr7g0264961 | 30.667 | 225 | 146 | 6 | 37 | 252 | 20 | 243 | 2.96e-17 | 79.0 |
| Msa0235980 | MtrunA17_Chr3g0145671 | 28.384 | 229 | 141 | 5 | 38 | 247 | 37 | 261 | 1.33e-16 | 77.8 |
| Msa0235980 | MtrunA17_Chr2g0326621 | 30.899 | 178 | 111 | 3 | 72 | 237 | 84 | 261 | 1.61e-16 | 77.8 |
| Msa0235980 | MtrunA17_Chr5g0436701 | 31.019 | 216 | 127 | 7 | 41 | 237 | 58 | 270 | 2.92e-16 | 77.0 |
| Msa0235980 | MtrunA17_Chr7g0264111 | 29.412 | 221 | 135 | 6 | 38 | 237 | 39 | 259 | 9.89e-16 | 75.5 |
| Msa0235980 | MtrunA17_Chr5g0397391 | 30.047 | 213 | 133 | 5 | 41 | 237 | 55 | 267 | 1.05e-15 | 75.5 |
| Msa0235980 | MtrunA17_Chr1g0212671 | 32.227 | 211 | 130 | 5 | 37 | 237 | 20 | 227 | 1.24e-15 | 74.7 |
| Msa0235980 | MtrunA17_Chr8g0386961 | 30.516 | 213 | 132 | 6 | 41 | 237 | 55 | 267 | 1.34e-15 | 75.1 |
| Msa0235980 | MtrunA17_Chr3g0113211 | 28.638 | 213 | 136 | 5 | 41 | 237 | 58 | 270 | 8.80e-15 | 72.8 |
| Msa0235980 | MtrunA17_Chr4g0006001 | 29.245 | 212 | 135 | 5 | 41 | 237 | 59 | 270 | 1.72e-14 | 72.0 |
| Msa0235980 | MtrunA17_Chr1g0199731 | 28.796 | 191 | 118 | 4 | 72 | 247 | 82 | 269 | 2.14e-14 | 71.6 |
| Msa0235980 | MtrunA17_Chr4g0020781 | 28.125 | 192 | 128 | 3 | 84 | 273 | 30 | 213 | 6.92e-13 | 66.2 |
| Msa0235980 | MtrunA17_Chr7g0222791 | 30.263 | 228 | 135 | 8 | 37 | 251 | 20 | 236 | 7.25e-13 | 66.6 |
| Msa0235980 | MtrunA17_Chr4g0029071 | 29.282 | 181 | 110 | 5 | 72 | 237 | 82 | 259 | 5.94e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0235980 | AT4G18910.1 | 70.980 | 255 | 67 | 1 | 26 | 273 | 40 | 294 | 3.75e-131 | 373 |
| Msa0235980 | AT4G19030.1 | 68.651 | 252 | 72 | 1 | 26 | 270 | 43 | 294 | 4.49e-125 | 358 |
| Msa0235980 | AT5G37820.1 | 58.431 | 255 | 103 | 1 | 18 | 269 | 20 | 274 | 7.86e-100 | 293 |
| Msa0235980 | AT5G37820.2 | 58.431 | 255 | 103 | 1 | 18 | 269 | 56 | 310 | 2.99e-99 | 293 |
| Msa0235980 | AT5G37810.1 | 54.015 | 274 | 119 | 3 | 1 | 268 | 1 | 273 | 1.42e-98 | 290 |
| Msa0235980 | AT4G18910.2 | 75.410 | 183 | 38 | 1 | 26 | 201 | 40 | 222 | 6.01e-92 | 271 |
| Msa0235980 | AT1G31885.1 | 53.036 | 247 | 109 | 1 | 20 | 259 | 25 | 271 | 3.07e-90 | 270 |
| Msa0235980 | AT2G34390.1 | 51.748 | 286 | 120 | 3 | 1 | 269 | 1 | 285 | 3.24e-90 | 269 |
| Msa0235980 | AT4G19030.3 | 70.330 | 182 | 47 | 1 | 26 | 200 | 43 | 224 | 1.80e-87 | 260 |
| Msa0235980 | AT2G34390.2 | 55.462 | 238 | 98 | 2 | 39 | 269 | 7 | 243 | 4.96e-86 | 257 |
| Msa0235980 | AT1G31885.2 | 54.839 | 217 | 91 | 1 | 50 | 259 | 1 | 217 | 1.63e-83 | 251 |
| Msa0235980 | AT4G19030.2 | 68.519 | 162 | 44 | 1 | 27 | 181 | 44 | 205 | 2.44e-75 | 229 |
| Msa0235980 | AT2G34390.3 | 54.128 | 218 | 82 | 3 | 1 | 201 | 1 | 217 | 1.36e-68 | 212 |
| Msa0235980 | AT4G10380.1 | 47.755 | 245 | 113 | 4 | 27 | 259 | 63 | 304 | 1.51e-67 | 212 |
| Msa0235980 | AT1G80760.1 | 52.036 | 221 | 101 | 2 | 34 | 252 | 76 | 293 | 1.79e-67 | 212 |
| Msa0235980 | AT2G34390.4 | 52.500 | 200 | 77 | 3 | 1 | 183 | 1 | 199 | 1.64e-59 | 189 |
| Msa0235980 | AT3G06100.1 | 40.367 | 218 | 128 | 2 | 37 | 253 | 45 | 261 | 2.16e-44 | 151 |
| Msa0235980 | AT3G06100.2 | 40.654 | 214 | 125 | 2 | 41 | 253 | 1 | 213 | 5.17e-44 | 149 |
| Msa0235980 | AT1G31885.3 | 56.842 | 95 | 41 | 0 | 20 | 114 | 25 | 119 | 2.33e-31 | 114 |
| Msa0235980 | AT2G29870.1 | 48.718 | 117 | 60 | 0 | 153 | 269 | 20 | 136 | 1.51e-30 | 111 |
| Msa0235980 | AT3G16240.1 | 34.783 | 207 | 128 | 3 | 37 | 236 | 18 | 224 | 3.41e-28 | 108 |
| Msa0235980 | AT5G47450.1 | 34.199 | 231 | 142 | 6 | 37 | 257 | 18 | 248 | 9.28e-27 | 105 |
| Msa0235980 | AT4G17340.1 | 33.478 | 230 | 143 | 6 | 37 | 256 | 18 | 247 | 8.50e-25 | 99.8 |
| Msa0235980 | AT3G06100.3 | 39.716 | 141 | 83 | 2 | 114 | 253 | 41 | 180 | 9.04e-25 | 98.2 |
| Msa0235980 | AT1G17810.1 | 32.794 | 247 | 143 | 7 | 24 | 253 | 13 | 253 | 2.34e-23 | 96.3 |
| Msa0235980 | AT1G73190.1 | 30.556 | 252 | 140 | 7 | 24 | 253 | 13 | 251 | 7.97e-22 | 92.4 |
| Msa0235980 | AT2G25810.1 | 30.837 | 227 | 137 | 7 | 19 | 237 | 7 | 221 | 5.89e-19 | 84.0 |
| Msa0235980 | AT3G26520.1 | 32.381 | 210 | 129 | 5 | 37 | 236 | 21 | 227 | 3.02e-18 | 82.0 |
| Msa0235980 | AT4G35100.1 | 30.131 | 229 | 137 | 6 | 38 | 247 | 38 | 262 | 1.38e-17 | 80.9 |
| Msa0235980 | AT4G35100.2 | 30.131 | 229 | 137 | 6 | 38 | 247 | 38 | 262 | 1.38e-17 | 80.9 |
| Msa0235980 | AT5G60660.1 | 28.270 | 237 | 143 | 6 | 35 | 247 | 36 | 269 | 2.14e-17 | 80.5 |
| Msa0235980 | AT2G36830.1 | 32.301 | 226 | 136 | 7 | 26 | 240 | 12 | 231 | 2.24e-17 | 79.7 |
| Msa0235980 | AT2G16850.1 | 28.017 | 232 | 138 | 6 | 38 | 247 | 36 | 260 | 3.65e-16 | 77.0 |
| Msa0235980 | AT2G39010.1 | 31.217 | 189 | 116 | 5 | 72 | 247 | 81 | 268 | 9.23e-16 | 75.9 |
| Msa0235980 | AT4G01470.1 | 30.288 | 208 | 138 | 3 | 37 | 237 | 20 | 227 | 1.10e-15 | 75.1 |
| Msa0235980 | AT3G53420.1 | 29.319 | 191 | 117 | 4 | 72 | 247 | 82 | 269 | 1.58e-15 | 75.1 |
| Msa0235980 | AT3G53420.2 | 29.319 | 191 | 117 | 4 | 72 | 247 | 82 | 269 | 1.58e-15 | 75.1 |
| Msa0235980 | AT1G01620.2 | 31.492 | 181 | 106 | 4 | 72 | 237 | 17 | 194 | 1.14e-14 | 71.6 |
| Msa0235980 | AT3G54820.1 | 26.923 | 234 | 144 | 5 | 38 | 247 | 38 | 268 | 1.17e-14 | 72.8 |
| Msa0235980 | AT1G01620.1 | 31.492 | 181 | 106 | 4 | 72 | 237 | 89 | 266 | 2.00e-14 | 72.0 |
| Msa0235980 | AT2G37170.1 | 28.272 | 191 | 119 | 4 | 72 | 247 | 80 | 267 | 3.41e-14 | 71.2 |
| Msa0235980 | AT3G61430.2 | 27.830 | 212 | 138 | 5 | 41 | 237 | 55 | 266 | 4.15e-14 | 71.2 |
| Msa0235980 | AT3G61430.1 | 27.830 | 212 | 138 | 5 | 41 | 237 | 55 | 266 | 4.15e-14 | 71.2 |
| Msa0235980 | AT4G00430.1 | 31.492 | 181 | 106 | 4 | 72 | 237 | 90 | 267 | 6.06e-14 | 70.9 |
| Msa0235980 | AT2G37170.2 | 28.272 | 191 | 119 | 4 | 72 | 247 | 123 | 310 | 6.32e-14 | 71.2 |
| Msa0235980 | AT2G37180.1 | 28.272 | 191 | 119 | 4 | 72 | 247 | 80 | 267 | 7.15e-14 | 70.5 |
| Msa0235980 | AT3G47440.1 | 29.630 | 216 | 142 | 5 | 37 | 244 | 22 | 235 | 9.66e-14 | 69.7 |
| Msa0235980 | AT2G45960.1 | 27.830 | 212 | 138 | 5 | 41 | 237 | 55 | 266 | 1.22e-13 | 69.7 |
| Msa0235980 | AT4G23400.1 | 30.939 | 181 | 107 | 4 | 72 | 237 | 90 | 267 | 1.83e-13 | 69.3 |
| Msa0235980 | AT2G45960.3 | 28.351 | 194 | 127 | 4 | 41 | 222 | 55 | 248 | 7.55e-13 | 67.8 |
| Msa0235980 | AT2G45960.2 | 28.351 | 194 | 127 | 4 | 41 | 222 | 55 | 248 | 7.99e-13 | 67.4 |
Find 85 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTCTGTTGGTCACATTTC+TGG | 0.071303 | 2_2:+8847805 | Msa0235980:CDS |
| TATCTTATGTTCGTCATTTC+TGG | 0.082482 | 2_2:+8848640 | Msa0235980:CDS |
| TGCATGACTCATCACAATTT+TGG | 0.127021 | 2_2:-8847258 | None:intergenic |
| AAGAGTGCCTCTTTCCTTAA+AGG | 0.183929 | 2_2:+8849752 | Msa0235980:CDS |
| TCCTGGGATTTCAATTGTTT+GGG | 0.185357 | 2_2:+8847759 | Msa0235980:CDS |
| TTCATTGATGCTCCAGTAAT+TGG | 0.244218 | 2_2:-8849581 | None:intergenic |
| TAGAGGAATATGGATATATT+TGG | 0.245829 | 2_2:+8849646 | Msa0235980:CDS |
| ATCCTGGGATTTCAATTGTT+TGG | 0.255375 | 2_2:+8847758 | Msa0235980:CDS |
| CTTATTCTTTGTCGGTGATA+TGG | 0.259310 | 2_2:+8847174 | Msa0235980:exon |
| GGGTCTCACTGTTATGGTTT+TGG | 0.266153 | 2_2:+8847780 | Msa0235980:CDS |
| TGCATCCACCAAAAGGTTTC+CGG | 0.271933 | 2_2:+8847861 | Msa0235980:CDS |
| TTCCTTAAAGGAGTAGAAAA+TGG | 0.281136 | 2_2:+8849764 | Msa0235980:CDS |
| ACGTACTTCTTGATATTTGC+AGG | 0.286199 | 2_2:+8847688 | Msa0235980:CDS |
| TTTGTTAACAGGCCAATTAC+TGG | 0.289918 | 2_2:+8849569 | Msa0235980:intron |
| CTGCTTAACCGGAAACCTTT+TGG | 0.301395 | 2_2:-8847869 | None:intergenic |
| TGTTTGGGGTCTCACTGTTA+TGG | 0.308145 | 2_2:+8847774 | Msa0235980:CDS |
| TATATAATATCTCAAGTTCT+TGG | 0.312865 | 2_2:+8848496 | Msa0235980:CDS |
| CATATCACCGACAAAGAATA+AGG | 0.326631 | 2_2:-8847173 | None:intergenic |
| CTTCTAAATGTTATGTTTGC+CGG | 0.328211 | 2_2:+8849198 | Msa0235980:CDS |
| GCAGGTCCTAAGCTCCTTGC+AGG | 0.331255 | 2_2:-8849605 | None:intergenic |
| ATAAAGAGTTTAGAGGAATA+TGG | 0.344662 | 2_2:+8849636 | Msa0235980:CDS |
| TTACATTCAAAACCATTTCA+TGG | 0.353026 | 2_2:-8847222 | None:intergenic |
| GCATCATCCTTATTCTTTGT+CGG | 0.365447 | 2_2:+8847166 | Msa0235980:five_prime_UTR |
| TATCTCTAGTTAATTTAGAT+TGG | 0.367884 | 2_2:+8849892 | Msa0235980:three_prime_UTR |
| ACTCGGATCACCTGCTTAAC+CGG | 0.396444 | 2_2:-8847880 | None:intergenic |
| TCCTGCTGGTTCTGATCTCC+AGG | 0.406259 | 2_2:+8848588 | Msa0235980:CDS |
| ATTGTTCATAAAGAGTTTAG+AGG | 0.413252 | 2_2:+8849629 | Msa0235980:CDS |
| TTCTGATCTCCAGGCATTTG+TGG | 0.415818 | 2_2:+8848597 | Msa0235980:CDS |
| ATGTAATTTACTTTATGTTA+CGG | 0.424850 | 2_2:+8849977 | Msa0235980:three_prime_UTR |
| TTCTACTCCTTTAAGGAAAG+AGG | 0.436744 | 2_2:-8849759 | None:intergenic |
| ATGAACCCTGCAAGGAGCTT+AGG | 0.445185 | 2_2:+8849599 | Msa0235980:CDS |
| AGTAGATCCAACTGCAAGTC+CGG | 0.451623 | 2_2:-8849172 | None:intergenic |
| ACACTTAGGCTTATATTCAA+TGG | 0.454254 | 2_2:+8848538 | Msa0235980:CDS |
| GACAAAGTGGTAACACATCC+TGG | 0.456746 | 2_2:+8847742 | Msa0235980:CDS |
| CAAAAGGTTTCCGGTTAAGC+AGG | 0.462415 | 2_2:+8847870 | Msa0235980:CDS |
| TAAGTGAGTTAGATTTATCA+AGG | 0.466276 | 2_2:+8849793 | Msa0235980:exon |
| CTCTTACTAATTTCACGCAC+TGG | 0.467398 | 2_2:-8849734 | None:intergenic |
| AAGCAATGGAAACCATGAAA+TGG | 0.472703 | 2_2:+8847210 | Msa0235980:CDS |
| GCAAAAGAGGCACATAGTCT+TGG | 0.488743 | 2_2:-8847282 | None:intergenic |
| ACAACTCTTGGTGCCATAGC+TGG | 0.490463 | 2_2:+8849674 | Msa0235980:CDS |
| TTGGTGCCATAGCTGGTACA+TGG | 0.491349 | 2_2:+8849681 | Msa0235980:CDS |
| ATACACACCTTCTGCAAAAG+AGG | 0.497346 | 2_2:-8847295 | None:intergenic |
| TTCTAAATGTTATGTTTGCC+GGG | 0.499731 | 2_2:+8849199 | Msa0235980:CDS |
| TATTTGGTATCAACAACTCT+TGG | 0.500417 | 2_2:+8849662 | Msa0235980:CDS |
| AACTCTTTATGAACAATAGC+AGG | 0.503476 | 2_2:-8849623 | None:intergenic |
| TGCAGGGTGTGCTGCTGTTG+TGG | 0.511373 | 2_2:+8847705 | Msa0235980:CDS |
| TTGCTCATGCATCCACCAAA+AGG | 0.514247 | 2_2:+8847854 | Msa0235980:CDS |
| CCTGGGATTTCAATTGTTTG+GGG | 0.520676 | 2_2:+8847760 | Msa0235980:CDS |
| TGAATTCAACCACAAATGCC+TGG | 0.521494 | 2_2:-8848606 | None:intergenic |
| GAGTGCCCATAAATTGGGGC+AGG | 0.526299 | 2_2:+8847080 | None:intergenic |
| TTACCACTTTGTCATTGTCA+AGG | 0.527510 | 2_2:-8847732 | None:intergenic |
| GGAGATTACCGCTCTATTGT+CGG | 0.528942 | 2_2:-8848671 | None:intergenic |
| GTAGTTGGTAGCAGAGGTTG+TGG | 0.535028 | 2_2:+8847663 | Msa0235980:intron |
| TGGTGCCATAGCTGGTACAT+GGG | 0.538881 | 2_2:+8849682 | Msa0235980:CDS |
| TCGCAGATTGGTGAGTTGGC+CGG | 0.540241 | 2_2:+8849153 | Msa0235980:intron |
| CCCCAAACAATTGAAATCCC+AGG | 0.550515 | 2_2:-8847760 | None:intergenic |
| TATGTTCGTCATTTCTGGAG+TGG | 0.553193 | 2_2:+8848645 | Msa0235980:CDS |
| GCATGAGCAATGGTGACAGC+AGG | 0.555499 | 2_2:-8847841 | None:intergenic |
| TAGTTGGTAGCAGAGGTTGT+GGG | 0.558311 | 2_2:+8847664 | Msa0235980:intron |
| AATATCGCAGATTGGTGAGT+TGG | 0.558536 | 2_2:+8849149 | Msa0235980:intron |
| GCACTGGCTTGTTTGTGTAC+CGG | 0.558893 | 2_2:-8849718 | None:intergenic |
| TAGGCTTATATTCAATGGCA+AGG | 0.559061 | 2_2:+8848543 | Msa0235980:CDS |
| ATATACATAACTAGAGGAAA+CGG | 0.565529 | 2_2:+8849929 | Msa0235980:three_prime_UTR |
| CATGGGCATATACTTTCATC+CGG | 0.565944 | 2_2:+8849699 | Msa0235980:CDS |
| CTTGGATCAACTCTTGCAAG+TGG | 0.567738 | 2_2:+8848514 | Msa0235980:CDS |
| CTTAAAGGAGTAGAAAATGG+TGG | 0.573302 | 2_2:+8849767 | Msa0235980:CDS |
| CGTACTTCTTGATATTTGCA+GGG | 0.575700 | 2_2:+8847689 | Msa0235980:CDS |
| GCCTGGAGATCAGAACCAGC+AGG | 0.579301 | 2_2:-8848589 | None:intergenic |
| ATATGCCCATGTACCAGCTA+TGG | 0.580208 | 2_2:-8849687 | None:intergenic |
| ACTTGAGATATTATATAAGC+CGG | 0.584944 | 2_2:-8848490 | None:intergenic |
| GAGTTGGCCGGACTTGCAGT+TGG | 0.596194 | 2_2:+8849165 | Msa0235980:CDS |
| GCTGATCATTCATCAAGCAA+TGG | 0.606516 | 2_2:+8847196 | Msa0235980:CDS |
| ACAAAGTGGTAACACATCCT+GGG | 0.613941 | 2_2:+8847743 | Msa0235980:CDS |
| GAGCATCAATGAACCCTGCA+AGG | 0.617643 | 2_2:+8849591 | Msa0235980:CDS |
| CAGGTCCTAAGCTCCTTGCA+GGG | 0.629880 | 2_2:-8849604 | None:intergenic |
| GTAACATAAAGTAAATTACA+TGG | 0.638499 | 2_2:-8849975 | None:intergenic |
| CTCTTGCAAGTGGAACACTT+AGG | 0.640873 | 2_2:+8848524 | Msa0235980:CDS |
| TATGTAATATACATAACTAG+AGG | 0.643201 | 2_2:+8849923 | Msa0235980:three_prime_UTR |
| TTGAATGTAGTTGGTAGCAG+AGG | 0.649135 | 2_2:+8847657 | Msa0235980:intron |
| AGTTGGTAGCAGAGGTTGTG+GGG | 0.653045 | 2_2:+8847665 | Msa0235980:intron |
| TTTGGTGGATGCATGAGCAA+TGG | 0.663155 | 2_2:-8847851 | None:intergenic |
| GATTACCGCTCTATTGTCGG+TGG | 0.674328 | 2_2:-8848668 | None:intergenic |
| GATTTATCAAGGATTGCACG+AGG | 0.684895 | 2_2:+8849804 | Msa0235980:three_prime_UTR |
| GAACCTTGACAATGACAAAG+TGG | 0.704582 | 2_2:+8847729 | Msa0235980:CDS |
| AGTGGCCACCGACAATAGAG+CGG | 0.719424 | 2_2:+8848663 | Msa0235980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTCAATAATTTTTTAGA+TGG | + | chr2_2:8848079-8848098 | Msa0235980:intron | 10.0% |
| !!! | TTTATTTTTCTTTTGAAAAT+TGG | + | chr2_2:8849027-8849046 | Msa0235980:intron | 10.0% |
| !!! | TTATTTTTCTTTTGAAAATT+GGG | + | chr2_2:8849028-8849047 | Msa0235980:intron | 10.0% |
| !! | ATATTGACAAAAAAAATAAA+AGG | - | chr2_2:8849134-8849153 | None:intergenic | 10.0% |
| !!! | GAATTTAATCTCTAAAATAT+CGG | + | chr2_2:8847369-8847388 | Msa0235980:intron | 15.0% |
| !!! | ATCTTTGTTATTAAAGTATT+AGG | - | chr2_2:8847471-8847490 | None:intergenic | 15.0% |
| !! | TAAAGAGTAAAATACTTTAA+AGG | + | chr2_2:8847555-8847574 | Msa0235980:intron | 15.0% |
| !!! | TACTTTAAAGGTTAAATTAA+CGG | + | chr2_2:8847567-8847586 | Msa0235980:intron | 15.0% |
| !! | GAGTATTTGTTTATATATAA+GGG | - | chr2_2:8848701-8848720 | None:intergenic | 15.0% |
| !!! | AGAGTATTTGTTTATATATA+AGG | - | chr2_2:8848702-8848721 | None:intergenic | 15.0% |
| !! | ATGTAATTTACTTTATGTTA+CGG | + | chr2_2:8849977-8849996 | Msa0235980:three_prime_UTR | 15.0% |
| !!! | CTGATATGTGATTTTAAATA+TGG | + | chr2_2:8847596-8847615 | Msa0235980:intron | 20.0% |
| !! | GAATCAATGTTGAAATAAAA+TGG | + | chr2_2:8847618-8847637 | Msa0235980:intron | 20.0% |
| !!! | GAATATAGTTTTAAAGAACT+CGG | - | chr2_2:8847900-8847919 | None:intergenic | 20.0% |
| !! | AATGTATCTGATTCAAAATT+TGG | + | chr2_2:8847963-8847982 | Msa0235980:intron | 20.0% |
| !! | AAGAAAATATGATTGCTTTA+AGG | - | chr2_2:8848166-8848185 | None:intergenic | 20.0% |
| !! | CCATATTATGAATTCAAAAA+CGG | - | chr2_2:8848333-8848352 | None:intergenic | 20.0% |
| !! | TTTGGATAATATGCAAAAAA+TGG | - | chr2_2:8848398-8848417 | None:intergenic | 20.0% |
| !! | GTACAATTAAGTATACTATT+TGG | - | chr2_2:8848416-8848435 | None:intergenic | 20.0% |
| !! | TATATAATATCTCAAGTTCT+TGG | + | chr2_2:8848496-8848515 | Msa0235980:CDS | 20.0% |
| !! | ACATGTTAATGAATATAATG+TGG | + | chr2_2:8848998-8849017 | Msa0235980:intron | 20.0% |
| !! | TATCTCTAGTTAATTTAGAT+TGG | + | chr2_2:8849892-8849911 | Msa0235980:three_prime_UTR | 20.0% |
| !! | TATGTAATATACATAACTAG+AGG | + | chr2_2:8849923-8849942 | Msa0235980:three_prime_UTR | 20.0% |
| !! | GTAACATAAAGTAAATTACA+TGG | - | chr2_2:8849978-8849997 | None:intergenic | 20.0% |
| ! | TTACATTCAAAACCATTTCA+TGG | - | chr2_2:8847225-8847244 | None:intergenic | 25.0% |
| !!! | GAAATGGTTTTGAATGTAAA+TGG | + | chr2_2:8847226-8847245 | Msa0235980:CDS | 25.0% |
| ! | TGTATTATGTTGAATGTAGT+TGG | + | chr2_2:8847648-8847667 | Msa0235980:intron | 25.0% |
| !!! | CAATAATTTTTTAGATGGTG+TGG | + | chr2_2:8848084-8848103 | Msa0235980:intron | 25.0% |
| ! | AAATGACATAATATAGAGCA+TGG | - | chr2_2:8848293-8848312 | None:intergenic | 25.0% |
| !!! | CCGTTTTTGAATTCATAATA+TGG | + | chr2_2:8848330-8848349 | Msa0235980:intron | 25.0% |
| ! | GCAAAAAATGGAAAAAGTTT+AGG | - | chr2_2:8848386-8848405 | None:intergenic | 25.0% |
| ! | ACTTGAGATATTATATAAGC+CGG | - | chr2_2:8848493-8848512 | None:intergenic | 25.0% |
| ! | TTGTTTATATATAAGGGCAA+AGG | - | chr2_2:8848695-8848714 | None:intergenic | 25.0% |
| !! | GAATATACACAACTTTTCAA+CGG | - | chr2_2:8848759-8848778 | None:intergenic | 25.0% |
| !! | TTCATTAACATGTGTTTCTA+AGG | - | chr2_2:8848991-8849010 | None:intergenic | 25.0% |
| !! | TTGAGGTTTGATTTATAGTT+AGG | - | chr2_2:8849231-8849250 | None:intergenic | 25.0% |
| !!! | TTCTCAATATGTTTAGTTTG+AGG | - | chr2_2:8849248-8849267 | None:intergenic | 25.0% |
| ! | TCTAACATTTACTCTCTTAT+TGG | - | chr2_2:8849396-8849415 | None:intergenic | 25.0% |
| ! | TAATCTTATTGAAGAACTCT+CGG | - | chr2_2:8849481-8849500 | None:intergenic | 25.0% |
| !! | AATCCTATATGTTTGTTAAC+AGG | + | chr2_2:8849558-8849577 | Msa0235980:intron | 25.0% |
| ! | ATTGTTCATAAAGAGTTTAG+AGG | + | chr2_2:8849629-8849648 | Msa0235980:CDS | 25.0% |
| ! | ATAAAGAGTTTAGAGGAATA+TGG | + | chr2_2:8849636-8849655 | Msa0235980:CDS | 25.0% |
| ! | TAGAGGAATATGGATATATT+TGG | + | chr2_2:8849646-8849665 | Msa0235980:CDS | 25.0% |
| ! | TAAGTGAGTTAGATTTATCA+AGG | + | chr2_2:8849793-8849812 | Msa0235980:exon | 25.0% |
| ! | ATATACATAACTAGAGGAAA+CGG | + | chr2_2:8849929-8849948 | Msa0235980:three_prime_UTR | 25.0% |
| !!! | TCGATTTTTTCATCGAATTA+TGG | + | chr2_2:8850018-8850037 | Msa0235980:three_prime_UTR | 25.0% |
| !!! | CGATTTTTTCATCGAATTAT+GGG | + | chr2_2:8850019-8850038 | Msa0235980:three_prime_UTR | 25.0% |
| CAAAAAAGTTCTATGTAGAG+TGG | - | chr2_2:8847329-8847348 | None:intergenic | 30.0% | |
| TGCTTTATATGCGAAAAAGT+TGG | + | chr2_2:8847927-8847946 | Msa0235980:intron | 30.0% | |
| GCTTTATATGCGAAAAAGTT+GGG | + | chr2_2:8847928-8847947 | Msa0235980:intron | 30.0% | |
| AATCCATATGCTTCAAAGTT+GGG | - | chr2_2:8848013-8848032 | None:intergenic | 30.0% | |
| TAATCCATATGCTTCAAAGT+TGG | - | chr2_2:8848014-8848033 | None:intergenic | 30.0% | |
| AAAACGGTTGCATACATATA+CGG | - | chr2_2:8848317-8848336 | None:intergenic | 30.0% | |
| GGAAGAGAAATTTCAATTGA+AGG | - | chr2_2:8848365-8848384 | None:intergenic | 30.0% | |
| TCTTCAATCTATAATCTTGC+AGG | + | chr2_2:8848465-8848484 | Msa0235980:intron | 30.0% | |
| ACACTTAGGCTTATATTCAA+TGG | + | chr2_2:8848538-8848557 | Msa0235980:CDS | 30.0% | |
| TATCTTATGTTCGTCATTTC+TGG | + | chr2_2:8848640-8848659 | Msa0235980:CDS | 30.0% | |
| AATTGCAAATATGTCACAAG+TGG | + | chr2_2:8848873-8848892 | Msa0235980:intron | 30.0% | |
| ! | ACAATAGTGTTGAAGATTGA+TGG | - | chr2_2:8848929-8848948 | None:intergenic | 30.0% |
| ! | TTTTTGTCAATATCGCAGAT+TGG | + | chr2_2:8849141-8849160 | Msa0235980:intron | 30.0% |
| CTTCTAAATGTTATGTTTGC+CGG | + | chr2_2:8849198-8849217 | Msa0235980:CDS | 30.0% | |
| TTCTAAATGTTATGTTTGCC+GGG | + | chr2_2:8849199-8849218 | Msa0235980:CDS | 30.0% | |
| TTTATAGTTAGGTTCATACC+CGG | - | chr2_2:8849220-8849239 | None:intergenic | 30.0% | |
| TAACAATCACTCTCTTATTG+AGG | + | chr2_2:8849301-8849320 | Msa0235980:intron | 30.0% | |
| AACAATCACTCTCTTATTGA+GGG | + | chr2_2:8849302-8849321 | Msa0235980:intron | 30.0% | |
| TTATTGGATCAAACTCACAT+GGG | - | chr2_2:8849380-8849399 | None:intergenic | 30.0% | |
| TAAGAGAGTAAATGTTAGAG+AGG | + | chr2_2:8849397-8849416 | Msa0235980:intron | 30.0% | |
| TAGAGAGGACATTAGAAAAA+AGG | + | chr2_2:8849412-8849431 | Msa0235980:intron | 30.0% | |
| CATTCCTCAAATATAGTTAG+TGG | + | chr2_2:8849444-8849463 | Msa0235980:intron | 30.0% | |
| AACTCTTTATGAACAATAGC+AGG | - | chr2_2:8849626-8849645 | None:intergenic | 30.0% | |
| TATTTGGTATCAACAACTCT+TGG | + | chr2_2:8849662-8849681 | Msa0235980:CDS | 30.0% | |
| TTCCTTAAAGGAGTAGAAAA+TGG | + | chr2_2:8849764-8849783 | Msa0235980:CDS | 30.0% | |
| GCATCATCCTTATTCTTTGT+CGG | + | chr2_2:8847166-8847185 | Msa0235980:five_prime_UTR | 35.0% | |
| CATATCACCGACAAAGAATA+AGG | - | chr2_2:8847176-8847195 | None:intergenic | 35.0% | |
| CTTATTCTTTGTCGGTGATA+TGG | + | chr2_2:8847174-8847193 | Msa0235980:exon | 35.0% | |
| AAGCAATGGAAACCATGAAA+TGG | + | chr2_2:8847210-8847229 | Msa0235980:CDS | 35.0% | |
| ! | GCATGACTCATCACAATTTT+GGG | - | chr2_2:8847260-8847279 | None:intergenic | 35.0% |
| ! | TGCATGACTCATCACAATTT+TGG | - | chr2_2:8847261-8847280 | None:intergenic | 35.0% |
| AGTTCTATGTAGAGTGGTTT+AGG | - | chr2_2:8847323-8847342 | None:intergenic | 35.0% | |
| ACGTACTTCTTGATATTTGC+AGG | + | chr2_2:8847688-8847707 | Msa0235980:CDS | 35.0% | |
| CGTACTTCTTGATATTTGCA+GGG | + | chr2_2:8847689-8847708 | Msa0235980:CDS | 35.0% | |
| TTACCACTTTGTCATTGTCA+AGG | - | chr2_2:8847735-8847754 | None:intergenic | 35.0% | |
| ATCCTGGGATTTCAATTGTT+TGG | + | chr2_2:8847758-8847777 | Msa0235980:CDS | 35.0% | |
| TCCTGGGATTTCAATTGTTT+GGG | + | chr2_2:8847759-8847778 | Msa0235980:CDS | 35.0% | |
| !!! | ATGGTTTTGGTTTACTCTGT+TGG | + | chr2_2:8847793-8847812 | Msa0235980:CDS | 35.0% |
| ATCTATAATCTTGCAGGTAC+CGG | + | chr2_2:8848471-8848490 | Msa0235980:intron | 35.0% | |
| TAGGCTTATATTCAATGGCA+AGG | + | chr2_2:8848543-8848562 | Msa0235980:CDS | 35.0% | |
| AAATATGTCACAAGTGGACA+TGG | + | chr2_2:8848879-8848898 | Msa0235980:intron | 35.0% | |
| AATATGTCACAAGTGGACAT+GGG | + | chr2_2:8848880-8848899 | Msa0235980:intron | 35.0% | |
| ! | CATATTAACACGTGTCGTTA+AGG | - | chr2_2:8849110-8849129 | None:intergenic | 35.0% |
| CTTATTGGATCAAACTCACA+TGG | - | chr2_2:8849381-8849400 | None:intergenic | 35.0% | |
| GTGTCCACTAACTATATTTG+AGG | - | chr2_2:8849451-8849470 | None:intergenic | 35.0% | |
| TGGCCTGTTAACAAACATAT+AGG | - | chr2_2:8849564-8849583 | None:intergenic | 35.0% | |
| TTTGTTAACAGGCCAATTAC+TGG | + | chr2_2:8849569-8849588 | Msa0235980:intron | 35.0% | |
| TTCATTGATGCTCCAGTAAT+TGG | - | chr2_2:8849584-8849603 | None:intergenic | 35.0% | |
| ! | TTCTACTCCTTTAAGGAAAG+AGG | - | chr2_2:8849762-8849781 | None:intergenic | 35.0% |
| ! | CACCATTTTCTACTCCTTTA+AGG | - | chr2_2:8849769-8849788 | None:intergenic | 35.0% |
| CTTAAAGGAGTAGAAAATGG+TGG | + | chr2_2:8849767-8849786 | Msa0235980:CDS | 35.0% | |
| GCTGATCATTCATCAAGCAA+TGG | + | chr2_2:8847196-8847215 | Msa0235980:CDS | 40.0% | |
| ATACACACCTTCTGCAAAAG+AGG | - | chr2_2:8847298-8847317 | None:intergenic | 40.0% | |
| !! | TTGAATGTAGTTGGTAGCAG+AGG | + | chr2_2:8847657-8847676 | Msa0235980:intron | 40.0% |
| GAACCTTGACAATGACAAAG+TGG | + | chr2_2:8847729-8847748 | Msa0235980:CDS | 40.0% | |
| ACAAAGTGGTAACACATCCT+GGG | + | chr2_2:8847743-8847762 | Msa0235980:CDS | 40.0% | |
| CCTGGGATTTCAATTGTTTG+GGG | + | chr2_2:8847760-8847779 | Msa0235980:CDS | 40.0% | |
| TACTCTGTTGGTCACATTTC+TGG | + | chr2_2:8847805-8847824 | Msa0235980:CDS | 40.0% | |
| TTCGCATATAAAGCACACGA+CGG | - | chr2_2:8847922-8847941 | None:intergenic | 40.0% | |
| !! | TGACCCAACTTTGAAGCATA+TGG | + | chr2_2:8848007-8848026 | Msa0235980:intron | 40.0% |
| GATGTTATGCGTGACTATGA+TGG | + | chr2_2:8848049-8848068 | Msa0235980:intron | 40.0% | |
| !! | GGCAAGGAAAACCATTTTTC+AGG | + | chr2_2:8848559-8848578 | Msa0235980:CDS | 40.0% |
| !! | CAGGAAGTGTTCCTGAAAAA+TGG | - | chr2_2:8848573-8848592 | None:intergenic | 40.0% |
| TGAATTCAACCACAAATGCC+TGG | - | chr2_2:8848609-8848628 | None:intergenic | 40.0% | |
| ! | TATGTTCGTCATTTCTGGAG+TGG | + | chr2_2:8848645-8848664 | Msa0235980:CDS | 40.0% |
| AATATCGCAGATTGGTGAGT+TGG | + | chr2_2:8849149-8849168 | Msa0235980:intron | 40.0% | |
| TCTTATTGAGGGAACTCATG+TGG | + | chr2_2:8849313-8849332 | Msa0235980:intron | 40.0% | |
| GAATTGGGTATCACCTAAAG+TGG | - | chr2_2:8849345-8849364 | None:intergenic | 40.0% | |
| CATGTCGTCACAATTCAGTT+TGG | + | chr2_2:8849505-8849524 | Msa0235980:intron | 40.0% | |
| CATGGGCATATACTTTCATC+CGG | + | chr2_2:8849699-8849718 | Msa0235980:CDS | 40.0% | |
| CTCTTACTAATTTCACGCAC+TGG | - | chr2_2:8849737-8849756 | None:intergenic | 40.0% | |
| !! | AAGAGTGCCTCTTTCCTTAA+AGG | + | chr2_2:8849752-8849771 | Msa0235980:CDS | 40.0% |
| GATTTATCAAGGATTGCACG+AGG | + | chr2_2:8849804-8849823 | Msa0235980:three_prime_UTR | 40.0% | |
| ! | GCAAAAGAGGCACATAGTCT+TGG | - | chr2_2:8847285-8847304 | None:intergenic | 45.0% |
| ! | CTATGTGCCTCTTTTGCAGA+AGG | + | chr2_2:8847288-8847307 | Msa0235980:CDS | 45.0% |
| !! | TAGTTGGTAGCAGAGGTTGT+GGG | + | chr2_2:8847664-8847683 | Msa0235980:intron | 45.0% |
| GACAAAGTGGTAACACATCC+TGG | + | chr2_2:8847742-8847761 | Msa0235980:CDS | 45.0% | |
| CCCCAAACAATTGAAATCCC+AGG | - | chr2_2:8847763-8847782 | None:intergenic | 45.0% | |
| ! | TGTTTGGGGTCTCACTGTTA+TGG | + | chr2_2:8847774-8847793 | Msa0235980:CDS | 45.0% |
| ! | GGGTCTCACTGTTATGGTTT+TGG | + | chr2_2:8847780-8847799 | Msa0235980:CDS | 45.0% |
| ! | TTTGGTGGATGCATGAGCAA+TGG | - | chr2_2:8847854-8847873 | None:intergenic | 45.0% |
| TTGCTCATGCATCCACCAAA+AGG | + | chr2_2:8847854-8847873 | Msa0235980:CDS | 45.0% | |
| TGCATCCACCAAAAGGTTTC+CGG | + | chr2_2:8847861-8847880 | Msa0235980:CDS | 45.0% | |
| ! | CTTAACCGGAAACCTTTTGG+TGG | - | chr2_2:8847869-8847888 | None:intergenic | 45.0% |
| ! | CTGCTTAACCGGAAACCTTT+TGG | - | chr2_2:8847872-8847891 | None:intergenic | 45.0% |
| CAAAAGGTTTCCGGTTAAGC+AGG | + | chr2_2:8847870-8847889 | Msa0235980:CDS | 45.0% | |
| CTTGGATCAACTCTTGCAAG+TGG | + | chr2_2:8848514-8848533 | Msa0235980:CDS | 45.0% | |
| CTCTTGCAAGTGGAACACTT+AGG | + | chr2_2:8848524-8848543 | Msa0235980:CDS | 45.0% | |
| !! | TTTTCAGGAACACTTCCTGC+TGG | + | chr2_2:8848574-8848593 | Msa0235980:CDS | 45.0% |
| TTCTGATCTCCAGGCATTTG+TGG | + | chr2_2:8848597-8848616 | Msa0235980:CDS | 45.0% | |
| GGAGATTACCGCTCTATTGT+CGG | - | chr2_2:8848674-8848693 | None:intergenic | 45.0% | |
| AGTAGATCCAACTGCAAGTC+CGG | - | chr2_2:8849175-8849194 | None:intergenic | 45.0% | |
| CATGTGGATCACACCACTTT+AGG | + | chr2_2:8849329-8849348 | Msa0235980:intron | 45.0% | |
| !! | GGGTCTCACACTTTGGAATT+GGG | - | chr2_2:8849360-8849379 | None:intergenic | 45.0% |
| !! | TGGGTCTCACACTTTGGAAT+TGG | - | chr2_2:8849361-8849380 | None:intergenic | 45.0% |
| ATATGCCCATGTACCAGCTA+TGG | - | chr2_2:8849690-8849709 | None:intergenic | 45.0% | |
| !! | GTAGTTGGTAGCAGAGGTTG+TGG | + | chr2_2:8847663-8847682 | Msa0235980:intron | 50.0% |
| !! | AGTTGGTAGCAGAGGTTGTG+GGG | + | chr2_2:8847665-8847684 | Msa0235980:intron | 50.0% |
| ACTCGGATCACCTGCTTAAC+CGG | - | chr2_2:8847883-8847902 | None:intergenic | 50.0% | |
| GATTACCGCTCTATTGTCGG+TGG | - | chr2_2:8848671-8848690 | None:intergenic | 50.0% | |
| CTCACATGGGTCTCACACTT+TGG | - | chr2_2:8849367-8849386 | None:intergenic | 50.0% | |
| GAGCATCAATGAACCCTGCA+AGG | + | chr2_2:8849591-8849610 | Msa0235980:CDS | 50.0% | |
| ATGAACCCTGCAAGGAGCTT+AGG | + | chr2_2:8849599-8849618 | Msa0235980:CDS | 50.0% | |
| !! | ACAACTCTTGGTGCCATAGC+TGG | + | chr2_2:8849674-8849693 | Msa0235980:CDS | 50.0% |
| !! | TTGGTGCCATAGCTGGTACA+TGG | + | chr2_2:8849681-8849700 | Msa0235980:CDS | 50.0% |
| !! | TGGTGCCATAGCTGGTACAT+GGG | + | chr2_2:8849682-8849701 | Msa0235980:CDS | 50.0% |
| !! | GCACTGGCTTGTTTGTGTAC+CGG | - | chr2_2:8849721-8849740 | None:intergenic | 50.0% |
| GCATGAGCAATGGTGACAGC+AGG | - | chr2_2:8847844-8847863 | None:intergenic | 55.0% | |
| !! | TCCTGCTGGTTCTGATCTCC+AGG | + | chr2_2:8848588-8848607 | Msa0235980:CDS | 55.0% |
| AGTGGCCACCGACAATAGAG+CGG | + | chr2_2:8848663-8848682 | Msa0235980:CDS | 55.0% | |
| ! | TCGCAGATTGGTGAGTTGGC+CGG | + | chr2_2:8849153-8849172 | Msa0235980:intron | 55.0% |
| CAGGTCCTAAGCTCCTTGCA+GGG | - | chr2_2:8849607-8849626 | None:intergenic | 55.0% | |
| ! | TGCAGGGTGTGCTGCTGTTG+TGG | + | chr2_2:8847705-8847724 | Msa0235980:CDS | 60.0% |
| GCCTGGAGATCAGAACCAGC+AGG | - | chr2_2:8848592-8848611 | None:intergenic | 60.0% | |
| GAGTTGGCCGGACTTGCAGT+TGG | + | chr2_2:8849165-8849184 | Msa0235980:CDS | 60.0% | |
| GCAGGTCCTAAGCTCCTTGC+AGG | - | chr2_2:8849608-8849627 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 8847095 | 8850072 | 8847095 | ID=Msa0235980;Name=Msa0235980 |
| chr2_2 | mRNA | 8847095 | 8850072 | 8847095 | ID=Msa0235980-mRNA-1;Parent=Msa0235980;Name=Msa0235980-mRNA-1;_AED=0.36;_eAED=0.36;_QI=98|1|1|1|1|1|5|273|273 |
| chr2_2 | exon | 8847095 | 8847309 | 8847095 | ID=Msa0235980-mRNA-1:exon:3816;Parent=Msa0235980-mRNA-1 |
| chr2_2 | exon | 8847667 | 8847891 | 8847667 | ID=Msa0235980-mRNA-1:exon:3817;Parent=Msa0235980-mRNA-1 |
| chr2_2 | exon | 8848487 | 8848684 | 8848487 | ID=Msa0235980-mRNA-1:exon:3818;Parent=Msa0235980-mRNA-1 |
| chr2_2 | exon | 8849159 | 8849220 | 8849159 | ID=Msa0235980-mRNA-1:exon:3819;Parent=Msa0235980-mRNA-1 |
| chr2_2 | exon | 8849580 | 8850072 | 8849580 | ID=Msa0235980-mRNA-1:exon:3820;Parent=Msa0235980-mRNA-1 |
| chr2_2 | five_prime_UTR | 8847095 | 8847192 | 8847095 | ID=Msa0235980-mRNA-1:five_prime_utr;Parent=Msa0235980-mRNA-1 |
| chr2_2 | CDS | 8847193 | 8847309 | 8847193 | ID=Msa0235980-mRNA-1:cds;Parent=Msa0235980-mRNA-1 |
| chr2_2 | CDS | 8847667 | 8847891 | 8847667 | ID=Msa0235980-mRNA-1:cds;Parent=Msa0235980-mRNA-1 |
| chr2_2 | CDS | 8848487 | 8848684 | 8848487 | ID=Msa0235980-mRNA-1:cds;Parent=Msa0235980-mRNA-1 |
| chr2_2 | CDS | 8849159 | 8849220 | 8849159 | ID=Msa0235980-mRNA-1:cds;Parent=Msa0235980-mRNA-1 |
| chr2_2 | CDS | 8849580 | 8849799 | 8849580 | ID=Msa0235980-mRNA-1:cds;Parent=Msa0235980-mRNA-1 |
| chr2_2 | three_prime_UTR | 8849800 | 8850072 | 8849800 | ID=Msa0235980-mRNA-1:three_prime_utr;Parent=Msa0235980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
