Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196840 | XP_013462864.1 | 87.374 | 198 | 4 | 2 | 1 | 190 | 1 | 185 | 1.27e-114 | 333 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196840 | sp|Q9ZS51|PMP22_ARATH | 61.421 | 197 | 53 | 3 | 1 | 187 | 1 | 184 | 2.96e-81 | 242 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196840 | I3SQE0 | 87.374 | 198 | 4 | 2 | 1 | 190 | 1 | 185 | 6.05e-115 | 333 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020410 | Msa0196840 | 0.802071 | 6.676388e-49 | -8.615850e-47 |
| Msa0043980 | Msa0196840 | 0.803348 | 3.638442e-49 | -8.615850e-47 |
| Msa0057680 | Msa0196840 | -0.805923 | 1.055753e-49 | -8.615850e-47 |
| Msa0079070 | Msa0196840 | 0.831435 | 1.672018e-55 | -8.615850e-47 |
| Msa0104240 | Msa0196840 | 0.802621 | 5.143306e-49 | -8.615850e-47 |
| Msa0114060 | Msa0196840 | 0.802487 | 5.482241e-49 | -8.615850e-47 |
| Msa0138020 | Msa0196840 | 0.803662 | 3.132436e-49 | -8.615850e-47 |
| Msa0196840 | Msa0211150 | 0.808206 | 3.470640e-50 | -8.615850e-47 |
| Msa0196840 | Msa0217290 | 0.817696 | 2.884290e-52 | -8.615850e-47 |
| Msa0196840 | Msa0218370 | 0.805567 | 1.254413e-49 | -8.615850e-47 |
| Msa0196840 | Msa0219590 | 0.821619 | 3.667221e-53 | -8.615850e-47 |
| Msa0196840 | Msa0241140 | 0.804825 | 1.793847e-49 | -8.615850e-47 |
| Msa0196840 | Msa0260680 | 0.804665 | 1.937258e-49 | -8.615850e-47 |
| Msa0196840 | Msa0280090 | 0.830772 | 2.433092e-55 | -8.615850e-47 |
| Msa0196840 | Msa0317970 | 0.800892 | 1.164616e-48 | -8.615850e-47 |
| Msa0196840 | Msa0342750 | 0.825570 | 4.362469e-54 | -8.615850e-47 |
| Msa0196840 | Msa0363790 | 0.807485 | 4.938935e-50 | -8.615850e-47 |
| Msa0196840 | Msa0379690 | 0.804830 | 1.789286e-49 | -8.615850e-47 |
| Msa0196840 | Msa0383800 | 0.829479 | 5.031588e-55 | -8.615850e-47 |
| Msa0196840 | Msa0411390 | 0.812176 | 4.836789e-51 | -8.615850e-47 |
| Msa0196840 | Msa0423860 | 0.812148 | 4.905785e-51 | -8.615850e-47 |
| Msa0196840 | Msa0434180 | 0.822386 | 2.435169e-53 | -8.615850e-47 |
| Msa0196840 | Msa0455760 | 0.813051 | 3.112516e-51 | -8.615850e-47 |
| Msa0196840 | Msa0518380 | 0.802837 | 4.641967e-49 | -8.615850e-47 |
| Msa0196840 | Msa0641670 | 0.813334 | 2.697485e-51 | -8.615850e-47 |
| Msa0196840 | Msa0679710 | 0.803544 | 3.314443e-49 | -8.615850e-47 |
| Msa0196840 | Msa0681270 | 0.802757 | 4.820470e-49 | -8.615850e-47 |
| Msa0196840 | Msa0707250 | 0.806829 | 6.803041e-50 | -8.615850e-47 |
| Msa0196840 | Msa0731940 | 0.800655 | 1.301591e-48 | -8.615850e-47 |
| Msa0196840 | Msa0748970 | 0.803315 | 3.697374e-49 | -8.615850e-47 |
| Msa0196840 | Msa0818060 | 0.834883 | 2.316575e-56 | -8.615850e-47 |
| Msa0196840 | Msa0822500 | 0.806291 | 8.833648e-50 | -8.615850e-47 |
| Msa0196840 | Msa0831110 | 0.800936 | 1.140713e-48 | -8.615850e-47 |
| Msa0196840 | Msa0831850 | 0.804860 | 1.763663e-49 | -8.615850e-47 |
| Msa0196840 | Msa0832340 | 0.809255 | 2.070784e-50 | -8.615850e-47 |
| Msa0196840 | Msa0849030 | 0.812087 | 5.057952e-51 | -8.615850e-47 |
| Msa0196840 | Msa0888260 | 0.807851 | 4.130844e-50 | -8.615850e-47 |
| Msa0196840 | Msa0901070 | 0.800433 | 1.444802e-48 | -8.615850e-47 |
| Msa0196840 | Msa0967280 | 0.800968 | 1.123466e-48 | -8.615850e-47 |
| Msa0196840 | Msa0969810 | 0.821511 | 3.882968e-53 | -8.615850e-47 |
| Msa0196840 | Msa1063690 | 0.801436 | 9.013219e-49 | -8.615850e-47 |
| Msa0196840 | Msa1075650 | 0.813711 | 2.228745e-51 | -8.615850e-47 |
| Msa0196840 | Msa1089460 | 0.800102 | 1.686621e-48 | -8.615850e-47 |
| Msa0196840 | Msa1104090 | 0.802363 | 5.812131e-49 | -8.615850e-47 |
| Msa0196840 | Msa1104560 | 0.832668 | 8.287681e-56 | -8.615850e-47 |
| Msa0196840 | Msa1109680 | 0.829054 | 6.377882e-55 | -8.615850e-47 |
| Msa0196840 | Msa1111870 | 0.812256 | 4.645922e-51 | -8.615850e-47 |
| Msa0196840 | Msa1121490 | 0.810764 | 9.798925e-51 | -8.615850e-47 |
| Msa0196840 | Msa1162780 | 0.806917 | 6.515990e-50 | -8.615850e-47 |
| Msa0196840 | Msa1181250 | 0.812879 | 3.394565e-51 | -8.615850e-47 |
| Msa0196840 | Msa1181330 | 0.805701 | 1.175815e-49 | -8.615850e-47 |
| Msa0196840 | Msa1231840 | 0.803867 | 2.839530e-49 | -8.615850e-47 |
| Msa0196840 | Msa1240510 | 0.803232 | 3.845157e-49 | -8.615850e-47 |
| Msa0196840 | Msa1280320 | 0.804081 | 2.563170e-49 | -8.615850e-47 |
| Msa0196840 | Msa1305810 | 0.831430 | 1.676800e-55 | -8.615850e-47 |
| Msa0196840 | Msa1308870 | 0.802856 | 4.600439e-49 | -8.615850e-47 |
| Msa0196840 | Msa1346840 | 0.800778 | 1.228378e-48 | -8.615850e-47 |
| Msa0196840 | Msa1355890 | 0.808150 | 3.566814e-50 | -8.615850e-47 |
| Msa0196840 | Msa1458750 | 0.805484 | 1.305775e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196840 | MtrunA17_Chr2g0288811 | 87.374 | 198 | 4 | 2 | 1 | 190 | 1 | 185 | 1.16e-118 | 333 |
| Msa0196840 | MtrunA17_Chr1g0187331 | 51.042 | 192 | 73 | 2 | 1 | 184 | 1 | 179 | 2.49e-66 | 201 |
| Msa0196840 | MtrunA17_Chr6g0465041 | 26.455 | 189 | 114 | 4 | 12 | 190 | 56 | 229 | 5.87e-18 | 78.6 |
| Msa0196840 | MtrunA17_Chr8g0390511 | 24.390 | 205 | 106 | 5 | 10 | 179 | 9 | 199 | 4.32e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0196840 | AT4G04470.1 | 61.421 | 197 | 53 | 3 | 1 | 187 | 1 | 184 | 3.01e-82 | 242 |
| Msa0196840 | AT4G04470.2 | 61.421 | 197 | 53 | 3 | 1 | 187 | 1 | 184 | 3.01e-82 | 242 |
| Msa0196840 | AT4G14305.1 | 52.083 | 192 | 71 | 2 | 1 | 184 | 1 | 179 | 8.68e-70 | 210 |
| Msa0196840 | AT4G14305.2 | 55.629 | 151 | 59 | 1 | 42 | 184 | 17 | 167 | 1.28e-60 | 187 |
| Msa0196840 | AT5G43140.1 | 25.967 | 181 | 109 | 4 | 12 | 182 | 82 | 247 | 8.99e-17 | 76.3 |
| Msa0196840 | AT5G19750.1 | 24.390 | 164 | 112 | 5 | 35 | 189 | 128 | 288 | 1.28e-12 | 65.1 |
Find 57 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTGGAGCTGGTTATCT+TGG | 0.238729 | 2_1:+14396678 | Msa0196840:CDS |
| AAATGAAGAATGTGAAAATT+AGG | 0.284698 | 2_1:-14395106 | None:intergenic |
| ATAAACAGAACATCACAATT+TGG | 0.286842 | 2_1:+14399076 | Msa0196840:three_prime_UTR |
| TCTTCCTCTGTTCGGTTGTT+TGG | 0.299490 | 2_1:-14394823 | None:intergenic |
| GCTGGTTATCTTGGACCGTT+TGG | 0.328716 | 2_1:+14396687 | Msa0196840:CDS |
| GCACTACTTTCATATAATAC+TGG | 0.340075 | 2_1:+14396710 | Msa0196840:CDS |
| CTGCAGTTCTGGCCTGTTGT+TGG | 0.341557 | 2_1:+14398439 | Msa0196840:intron |
| AGTAATAATCTCTCAAACTT+TGG | 0.342670 | 2_1:+14399047 | Msa0196840:three_prime_UTR |
| ATAGTGTCTCAGAAGCTTAC+TGG | 0.346392 | 2_1:+14395178 | Msa0196840:CDS |
| AAGCACACAGAAATAAAATA+TGG | 0.350207 | 2_1:-14398861 | None:intergenic |
| TAGAAGCATCTACTATATAT+TGG | 0.354508 | 2_1:-14398806 | None:intergenic |
| TGCAGTTCTGGCCTGTTGTT+GGG | 0.356972 | 2_1:+14398440 | Msa0196840:intron |
| ATTACTGCTGGTGTGTTGTC+AGG | 0.361890 | 2_1:+14395145 | Msa0196840:CDS |
| ACTTTCTTAAAGACCATTAC+CGG | 0.374637 | 2_1:+14398981 | Msa0196840:three_prime_UTR |
| GTTTGGTTTGACCGGAGAAA+TGG | 0.380454 | 2_1:-14394806 | None:intergenic |
| TACTATGGATTGGTTATTGA+AGG | 0.391033 | 2_1:+14397306 | Msa0196840:CDS |
| CTGGTTATCTTGGACCGTTT+GGG | 0.403594 | 2_1:+14396688 | Msa0196840:CDS |
| TAATTTATCCACCCAACAAC+AGG | 0.412614 | 2_1:-14398451 | None:intergenic |
| ACAGCTTAGTAGCATTTGTC+TGG | 0.437917 | 2_1:+14398509 | Msa0196840:CDS |
| TGGATGCAGCTTCTTGGAGC+TGG | 0.445936 | 2_1:+14396669 | Msa0196840:intron |
| ATGGGTTCTGTTGCAAAGAA+TGG | 0.448957 | 2_1:+14394845 | Msa0196840:CDS |
| GTTCGGTTGTTTGGTTTGAC+CGG | 0.450505 | 2_1:-14394814 | None:intergenic |
| TATGAGCATCTAACCGGTAA+TGG | 0.466046 | 2_1:-14398994 | None:intergenic |
| TTTAACTATGAGCATCTAAC+CGG | 0.467833 | 2_1:-14399000 | None:intergenic |
| AGTGGATTGCAGGCCAACCT+TGG | 0.469090 | 2_1:+14398233 | Msa0196840:intron |
| TGTGAAAGCTAGAGTGAAGA+AGG | 0.470690 | 2_1:+14398261 | Msa0196840:CDS |
| TTTCATGATATACTATGGAT+TGG | 0.471729 | 2_1:+14397296 | Msa0196840:CDS |
| TTTGGTTTGACCGGAGAAAT+GGG | 0.484408 | 2_1:-14394805 | None:intergenic |
| AGAACCCATCTTCCTCTGTT+CGG | 0.484457 | 2_1:-14394831 | None:intergenic |
| CATGATGCTTTCTGCACTGA+TGG | 0.489068 | 2_1:-14398289 | None:intergenic |
| TGACATTGACTAAATCTTGA+GGG | 0.499512 | 2_1:+14398773 | Msa0196840:CDS |
| AAGATGTCAACTGTTCAATC+AGG | 0.510636 | 2_1:-14397254 | None:intergenic |
| GTGGATTGCAGGCCAACCTT+GGG | 0.520335 | 2_1:+14398234 | Msa0196840:intron |
| AACAACCGAACAGAGGAAGA+TGG | 0.525352 | 2_1:+14394826 | Msa0196840:exon |
| TGCTCATAGTTAAAATGCTA+TGG | 0.528139 | 2_1:+14399009 | Msa0196840:three_prime_UTR |
| TGGACACAACAAACTACTAA+AGG | 0.531752 | 2_1:-14398841 | None:intergenic |
| AAACTTACCTTGGTTCTCAA+AGG | 0.541254 | 2_1:-14394902 | None:intergenic |
| CTTTCACATTGACCCAAGGT+TGG | 0.541997 | 2_1:-14398246 | None:intergenic |
| ATGAAAATCAAATTGTTCAA+AGG | 0.546395 | 2_1:-14397279 | None:intergenic |
| ATATGAAAGTAGTGCCCAAA+CGG | 0.548043 | 2_1:-14396702 | None:intergenic |
| GTAAAACAGGTCATTACTGC+TGG | 0.549845 | 2_1:+14395133 | Msa0196840:CDS |
| CATCAGTGCAGAAAGCATCA+TGG | 0.557769 | 2_1:+14398290 | Msa0196840:CDS |
| TTACTGCTGGTGTGTTGTCA+GGG | 0.558027 | 2_1:+14395146 | Msa0196840:CDS |
| ACAGACGCAACCCATTTCTC+CGG | 0.561506 | 2_1:+14394795 | Msa0196840:five_prime_UTR |
| ACAACCGAACAGAGGAAGAT+GGG | 0.572600 | 2_1:+14394827 | Msa0196840:exon |
| CTAGCTTTCACATTGACCCA+AGG | 0.576629 | 2_1:-14398250 | None:intergenic |
| ATGACATTGACTAAATCTTG+AGG | 0.588326 | 2_1:+14398772 | Msa0196840:CDS |
| AGTTCTGGCCTGTTGTTGGG+TGG | 0.605028 | 2_1:+14398443 | Msa0196840:intron |
| AGAACATCCTTTGAGAACCA+AGG | 0.607155 | 2_1:+14394895 | Msa0196840:CDS |
| AGACAAATGCTACTAAGCTG+TGG | 0.616134 | 2_1:-14398507 | None:intergenic |
| GTGAAAGCTAGAGTGAAGAA+GGG | 0.635285 | 2_1:+14398262 | Msa0196840:CDS |
| ATGTCATAGATCGTGCTCGA+AGG | 0.638913 | 2_1:-14398756 | None:intergenic |
| AAAACAACACGGAAATGAAG+AGG | 0.640824 | 2_1:-14398484 | None:intergenic |
| CTAAGCTGTGGAAAACAACA+CGG | 0.662691 | 2_1:-14398495 | None:intergenic |
| CAAACCAAACAACCGAACAG+AGG | 0.665643 | 2_1:+14394819 | Msa0196840:five_prime_UTR |
| AAATTATGATCATTGTACCA+AGG | 0.677602 | 2_1:+14399100 | Msa0196840:three_prime_UTR |
| AGTGCAGAAAGCATCATGGA+CGG | 0.692696 | 2_1:+14398294 | Msa0196840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTCATATAATTTTTTTTTAT+TGG | + | chr2_1:14396649-14396668 | Msa0196840:intron | 10.0% |
| !!! | AAGTAGATTTTTTTATACAA+GGG | - | chr2_1:14394998-14395017 | None:intergenic | 15.0% |
| !!! | AAAGTAGATTTTTTTATACA+AGG | - | chr2_1:14394999-14395018 | None:intergenic | 15.0% |
| !! | ATTCAAATTGAAAAACAAAA+TGG | - | chr2_1:14395257-14395276 | None:intergenic | 15.0% |
| !!! | AAAATTTCTTTTGATGATTT+TGG | + | chr2_1:14396213-14396232 | Msa0196840:intron | 15.0% |
| !! | TACAATAATTGTAAAAGAAA+TGG | - | chr2_1:14396500-14396519 | None:intergenic | 15.0% |
| !! | TATTTATATATAGCAACAAA+AGG | - | chr2_1:14396615-14396634 | None:intergenic | 15.0% |
| !! | TATATAAATATGTATGCATT+AGG | + | chr2_1:14396625-14396644 | Msa0196840:intron | 15.0% |
| !! | AATAAAATTACTAGTTGAAT+AGG | - | chr2_1:14397472-14397491 | None:intergenic | 15.0% |
| !!! | AGCTCAATTTTATTTTAATA+AGG | + | chr2_1:14397570-14397589 | Msa0196840:intron | 15.0% |
| !!! | TGATTAAAATCAAATGTTTT+TGG | - | chr2_1:14398035-14398054 | None:intergenic | 15.0% |
| !! | TATGTATATAATGAAAAAAG+TGG | + | chr2_1:14398215-14398234 | Msa0196840:intron | 15.0% |
| !!! | TAGTTGTTTTTTCTCTTATT+AGG | + | chr2_1:14394721-14394740 | Msa0196840:five_prime_UTR | 20.0% |
| !!! | AGTAGATTTTTTTATACAAG+GGG | - | chr2_1:14394997-14395016 | None:intergenic | 20.0% |
| !! | AAATGAAGAATGTGAAAATT+AGG | - | chr2_1:14395109-14395128 | None:intergenic | 20.0% |
| !!! | AATTTTCACATTCTTCATTT+TGG | + | chr2_1:14395109-14395128 | Msa0196840:CDS | 20.0% |
| !! | AATTGAATTTGTAGTGTTAA+AGG | + | chr2_1:14395308-14395327 | Msa0196840:intron | 20.0% |
| !! | ATTGAATTTGTAGTGTTAAA+GGG | + | chr2_1:14395309-14395328 | Msa0196840:intron | 20.0% |
| !!! | ATTAAAGGTTGATAAGTTAA+AGG | + | chr2_1:14395363-14395382 | Msa0196840:intron | 20.0% |
| !! | TAAAAAATGAATTATAGTGC+TGG | + | chr2_1:14395453-14395472 | Msa0196840:intron | 20.0% |
| !!! | TGATATTTGTTAATGAAGTT+CGG | + | chr2_1:14395538-14395557 | Msa0196840:intron | 20.0% |
| !! | CTCAAAAAAATATTTCAACA+TGG | - | chr2_1:14395914-14395933 | None:intergenic | 20.0% |
| !!! | CATGTTGAAATATTTTTTTG+AGG | + | chr2_1:14395912-14395931 | Msa0196840:intron | 20.0% |
| !! | AATATTGGAAATTCAATAGA+AGG | - | chr2_1:14396272-14396291 | None:intergenic | 20.0% |
| !! | GAGATAGTACTATATTATTA+AGG | + | chr2_1:14396301-14396320 | Msa0196840:intron | 20.0% |
| !! | TAGTACTATATTATTAAGGA+TGG | + | chr2_1:14396305-14396324 | Msa0196840:intron | 20.0% |
| !! | AGTACTATATTATTAAGGAT+GGG | + | chr2_1:14396306-14396325 | Msa0196840:intron | 20.0% |
| !!! | GCTGTTTAAAATGTTAATAT+TGG | + | chr2_1:14396367-14396386 | Msa0196840:intron | 20.0% |
| !!! | TTGTCTATATACTTTTCTTT+TGG | - | chr2_1:14396415-14396434 | None:intergenic | 20.0% |
| !!! | TATAGACAAACATTTTTGAA+AGG | + | chr2_1:14396426-14396445 | Msa0196840:intron | 20.0% |
| !!! | ATAGACAAACATTTTTGAAA+GGG | + | chr2_1:14396427-14396446 | Msa0196840:intron | 20.0% |
| !! | ATGGAAATACTTAAAAATTC+AGG | + | chr2_1:14396921-14396940 | Msa0196840:intron | 20.0% |
| !! | TGGAAATACTTAAAAATTCA+GGG | + | chr2_1:14396922-14396941 | Msa0196840:intron | 20.0% |
| !!! | TCTCTTTGAATTTTTTTTTC+AGG | + | chr2_1:14397230-14397249 | Msa0196840:intron | 20.0% |
| !! | ATGAAAATCAAATTGTTCAA+AGG | - | chr2_1:14397282-14397301 | None:intergenic | 20.0% |
| !!! | TTGATTTTCATGATATACTA+TGG | + | chr2_1:14397291-14397310 | Msa0196840:CDS | 20.0% |
| !!! | TAACTTTTTCATTTAGTTGA+AGG | + | chr2_1:14397348-14397367 | Msa0196840:intron | 20.0% |
| !!! | TGGTCTTTGAAAAAAAAAAA+GGG | + | chr2_1:14397794-14397813 | Msa0196840:intron | 20.0% |
| !!! | ATCAGTTTTAAAATGCAATT+TGG | + | chr2_1:14397932-14397951 | Msa0196840:intron | 20.0% |
| !!! | TTTTAAAATGCAATTTGGAA+TGG | + | chr2_1:14397937-14397956 | Msa0196840:intron | 20.0% |
| !!! | TATATATGCTGTTTTATTTC+AGG | + | chr2_1:14398719-14398738 | Msa0196840:intron | 20.0% |
| !!! | ATATATGCTGTTTTATTTCA+GGG | + | chr2_1:14398720-14398739 | Msa0196840:intron | 20.0% |
| !! | TTTTTCTCTTATTAGGACTT+TGG | + | chr2_1:14394728-14394747 | Msa0196840:five_prime_UTR | 25.0% |
| !!! | TGAAATATTTTTTTGAGGAG+AGG | + | chr2_1:14395917-14395936 | Msa0196840:intron | 25.0% |
| !!! | GAAATATTTTTTTGAGGAGA+GGG | + | chr2_1:14395918-14395937 | Msa0196840:intron | 25.0% |
| !!! | TAAACTATTTTTTTGAGGAG+AGG | + | chr2_1:14396074-14396093 | Msa0196840:intron | 25.0% |
| !!! | AAACTATTTTTTTGAGGAGA+GGG | + | chr2_1:14396075-14396094 | Msa0196840:intron | 25.0% |
| ! | TTGAATTTCCAATATTCATG+TGG | + | chr2_1:14396276-14396295 | Msa0196840:intron | 25.0% |
| !! | TAAACAGCTTTTTATCATAG+CGG | - | chr2_1:14396355-14396374 | None:intergenic | 25.0% |
| !! | ATACTGGAAAAGATTTTCAA+AGG | + | chr2_1:14396726-14396745 | Msa0196840:CDS | 25.0% |
| ! | AAAGAAAGATTCAAAAACTG+TGG | + | chr2_1:14396749-14396768 | Msa0196840:CDS | 25.0% |
| ! | TTTCATGATATACTATGGAT+TGG | + | chr2_1:14397296-14397315 | Msa0196840:CDS | 25.0% |
| ! | TATACCAAGTCAAATACATA+TGG | + | chr2_1:14397381-14397400 | Msa0196840:intron | 25.0% |
| ! | TCAAATACATATGGAAAGTA+TGG | + | chr2_1:14397390-14397409 | Msa0196840:intron | 25.0% |
| !! | GTGGTCTTTGAAAAAAAAAA+AGG | + | chr2_1:14397793-14397812 | Msa0196840:intron | 25.0% |
| ! | CTTAAAATTCGTACAAAAGA+TGG | + | chr2_1:14398062-14398081 | Msa0196840:intron | 25.0% |
| !! | TTGTGTACAACTTTTTACAT+TGG | - | chr2_1:14398102-14398121 | None:intergenic | 25.0% |
| ! | AATGGAAATGGGATAAAAAT+GGG | - | chr2_1:14398165-14398184 | None:intergenic | 25.0% |
| ! | AAATGGAAATGGGATAAAAA+TGG | - | chr2_1:14398166-14398185 | None:intergenic | 25.0% |
| !! | TTTTACACGTAAATGGAAAT+GGG | - | chr2_1:14398176-14398195 | None:intergenic | 25.0% |
| !! | ATTTTACACGTAAATGGAAA+TGG | - | chr2_1:14398177-14398196 | None:intergenic | 25.0% |
| ! | ATTTCCATTTACGTGTAAAA+TGG | + | chr2_1:14398176-14398195 | Msa0196840:intron | 25.0% |
| ! | TATATACATAACTACCAACA+AGG | - | chr2_1:14398205-14398224 | None:intergenic | 25.0% |
| ! | TTAAGAAGTTAAGGAAAGTT+GGG | - | chr2_1:14398562-14398581 | None:intergenic | 25.0% |
| ! | TATACACACTTAAGAAGTTA+AGG | - | chr2_1:14398571-14398590 | None:intergenic | 25.0% |
| ! | TAATTGTTGCTATAGACTAA+CGG | + | chr2_1:14398609-14398628 | Msa0196840:intron | 25.0% |
| !!! | TATATGCTGTTTTATTTCAG+GGG | + | chr2_1:14398721-14398740 | Msa0196840:intron | 25.0% |
| !!! | TAGAAGCATCTACTATATAT+TGG | - | chr2_1:14398809-14398828 | None:intergenic | 25.0% |
| ! | AAGCACACAGAAATAAAATA+TGG | - | chr2_1:14398864-14398883 | None:intergenic | 25.0% |
| !!! | ACATGAGAGAATACATTTTT+TGG | + | chr2_1:14398945-14398964 | Msa0196840:three_prime_UTR | 25.0% |
| ! | AGTAATAATCTCTCAAACTT+TGG | + | chr2_1:14399047-14399066 | Msa0196840:three_prime_UTR | 25.0% |
| ! | ATAAACAGAACATCACAATT+TGG | + | chr2_1:14399076-14399095 | Msa0196840:three_prime_UTR | 25.0% |
| ! | AAATTATGATCATTGTACCA+AGG | + | chr2_1:14399100-14399119 | Msa0196840:three_prime_UTR | 25.0% |
| AAAGAAGAGAAAACTTACCT+TGG | - | chr2_1:14394915-14394934 | None:intergenic | 30.0% | |
| !! | AAATCTACTTTTAGTCCTTC+AGG | + | chr2_1:14395008-14395027 | Msa0196840:intron | 30.0% |
| !! | TCCTTCAGGTATTGAATTAT+TGG | + | chr2_1:14395022-14395041 | Msa0196840:intron | 30.0% |
| ACCAATAATTCAATACCTGA+AGG | - | chr2_1:14395026-14395045 | None:intergenic | 30.0% | |
| !! | TTCAGGTATTGAATTATTGG+TGG | + | chr2_1:14395025-14395044 | Msa0196840:intron | 30.0% |
| !! | TCAGGTATTGAATTATTGGT+GGG | + | chr2_1:14395026-14395045 | Msa0196840:intron | 30.0% |
| !!! | TCTTCATTTTGGAGTAAAAC+AGG | + | chr2_1:14395120-14395139 | Msa0196840:CDS | 30.0% |
| CAAAAGACTTCTTCTTAAAG+TGG | + | chr2_1:14395219-14395238 | Msa0196840:intron | 30.0% | |
| ATTTGTAGTGTTAAAGGGTT+TGG | + | chr2_1:14395314-14395333 | Msa0196840:intron | 30.0% | |
| TTTGTAGTGTTAAAGGGTTT+GGG | + | chr2_1:14395315-14395334 | Msa0196840:intron | 30.0% | |
| AGTTTGAGCTAAGTGATTAA+AGG | + | chr2_1:14395348-14395367 | Msa0196840:intron | 30.0% | |
| ATATTTGTCGGTGAAAGATT+AGG | + | chr2_1:14395597-14395616 | Msa0196840:intron | 30.0% | |
| TATTTGTCGGTGAAAGATTA+GGG | + | chr2_1:14395598-14395617 | Msa0196840:intron | 30.0% | |
| TCTTACCTTGTAGACAAATT+TGG | - | chr2_1:14395848-14395867 | None:intergenic | 30.0% | |
| ! | ATTTCAACATGGATTGAATC+AGG | - | chr2_1:14395903-14395922 | None:intergenic | 30.0% |
| !!! | TAGACTATTTTTTTGAGGAG+AGG | + | chr2_1:14395996-14396015 | Msa0196840:intron | 30.0% |
| !!! | AGACTATTTTTTTGAGGAGA+GGG | + | chr2_1:14395997-14396016 | Msa0196840:intron | 30.0% |
| !!! | GTGGCTAAACTATTTTTTTG+AGG | + | chr2_1:14396069-14396088 | Msa0196840:intron | 30.0% |
| TATCTCTTCCACATGAATAT+TGG | - | chr2_1:14396287-14396306 | None:intergenic | 30.0% | |
| ! | TATATTATTAAGGATGGGCT+TGG | + | chr2_1:14396311-14396330 | Msa0196840:intron | 30.0% |
| ! | ATATTATTAAGGATGGGCTT+GGG | + | chr2_1:14396312-14396331 | Msa0196840:intron | 30.0% |
| CTTGGGTTTGATAAACAATT+AGG | + | chr2_1:14396329-14396348 | Msa0196840:intron | 30.0% | |
| !! | TATTGGTTCTATTTCTCATC+TGG | + | chr2_1:14396384-14396403 | Msa0196840:intron | 30.0% |
| AGAAAGGAAGATAAATGTGA+TGG | - | chr2_1:14396546-14396565 | None:intergenic | 30.0% | |
| TGCAAATGACTGTAAAAGAA+AGG | - | chr2_1:14396562-14396581 | None:intergenic | 30.0% | |
| GCACTACTTTCATATAATAC+TGG | + | chr2_1:14396710-14396729 | Msa0196840:CDS | 30.0% | |
| TCTATCTATGACCTAAATTC+AGG | + | chr2_1:14396816-14396835 | Msa0196840:intron | 30.0% | |
| AGTCATGTGTAAAATGTGTT+TGG | - | chr2_1:14397017-14397036 | None:intergenic | 30.0% | |
| !! | TACTATGGATTGGTTATTGA+AGG | + | chr2_1:14397306-14397325 | Msa0196840:CDS | 30.0% |
| CTTTCCATATGTATTTGACT+TGG | - | chr2_1:14397388-14397407 | None:intergenic | 30.0% | |
| TTGTCATCAGTGTCAAAAAT+AGG | + | chr2_1:14397426-14397445 | Msa0196840:intron | 30.0% | |
| AGATATCCTAAAATGATGTG+TGG | + | chr2_1:14397518-14397537 | Msa0196840:intron | 30.0% | |
| ! | TTATGTCCACACATCATTTT+AGG | - | chr2_1:14397527-14397546 | None:intergenic | 30.0% |
| GTGGACATAAACTTACTTAT+CGG | + | chr2_1:14397537-14397556 | Msa0196840:intron | 30.0% | |
| TCAACTCGACTTAAATTAGT+GGG | + | chr2_1:14397634-14397653 | Msa0196840:intron | 30.0% | |
| AATCTCATTTGCAATACGAT+CGG | + | chr2_1:14398138-14398157 | Msa0196840:intron | 30.0% | |
| !! | TAATGAAAAAAGTGGATTGC+AGG | + | chr2_1:14398223-14398242 | Msa0196840:intron | 30.0% |
| AGAAAGACAGGAGAAAAAAA+GGG | - | chr2_1:14398539-14398558 | None:intergenic | 30.0% | |
| CTTAAGAAGTTAAGGAAAGT+TGG | - | chr2_1:14398563-14398582 | None:intergenic | 30.0% | |
| TCTTAAGTGTGTATAGTTTG+AGG | + | chr2_1:14398576-14398595 | Msa0196840:intron | 30.0% | |
| !!! | ATATGCTGTTTTATTTCAGG+GGG | + | chr2_1:14398722-14398741 | Msa0196840:intron | 30.0% |
| ! | ATGACATTGACTAAATCTTG+AGG | + | chr2_1:14398772-14398791 | Msa0196840:CDS | 30.0% |
| ! | TGACATTGACTAAATCTTGA+GGG | + | chr2_1:14398773-14398792 | Msa0196840:CDS | 30.0% |
| ACTTTCTTAAAGACCATTAC+CGG | + | chr2_1:14398981-14399000 | Msa0196840:three_prime_UTR | 30.0% | |
| TTTAACTATGAGCATCTAAC+CGG | - | chr2_1:14399003-14399022 | None:intergenic | 30.0% | |
| TGCTCATAGTTAAAATGCTA+TGG | + | chr2_1:14399009-14399028 | Msa0196840:three_prime_UTR | 30.0% | |
| ! | AAACTTACCTTGGTTCTCAA+AGG | - | chr2_1:14394905-14394924 | None:intergenic | 35.0% |
| GGTGAAGCAAAAACAAACAT+GGG | - | chr2_1:14394976-14394995 | None:intergenic | 35.0% | |
| ! | GTTGATAAGTTAAAGGTGCA+GGG | + | chr2_1:14395370-14395389 | Msa0196840:intron | 35.0% |
| CAGCTTGTATTTAGATACTG+CGG | + | chr2_1:14395632-14395651 | Msa0196840:intron | 35.0% | |
| ! | CCTTTGGGTAAGTTGAAATT+GGG | - | chr2_1:14395727-14395746 | None:intergenic | 35.0% |
| CCAATTTCAACTTACCCAAA+GGG | + | chr2_1:14395725-14395744 | Msa0196840:intron | 35.0% | |
| CATGACCAAATTTGTCTACA+AGG | + | chr2_1:14395840-14395859 | Msa0196840:intron | 35.0% | |
| ACAAGGTAAGAATGTGTACA+TGG | + | chr2_1:14395857-14395876 | Msa0196840:intron | 35.0% | |
| !!! | GTGGCTAGACTATTTTTTTG+AGG | + | chr2_1:14395991-14396010 | Msa0196840:intron | 35.0% |
| TTCTTGTATGAGTCTGACTT+TGG | - | chr2_1:14396171-14396190 | None:intergenic | 35.0% | |
| ! | TTTTATTGGATGCAGCTTCT+TGG | + | chr2_1:14396663-14396682 | Msa0196840:intron | 35.0% |
| ATATGAAAGTAGTGCCCAAA+CGG | - | chr2_1:14396705-14396724 | None:intergenic | 35.0% | |
| ATTCAAAAACTGTGGTCAAG+AGG | + | chr2_1:14396757-14396776 | Msa0196840:CDS | 35.0% | |
| TTCAAAAACTGTGGTCAAGA+GGG | + | chr2_1:14396758-14396777 | Msa0196840:CDS | 35.0% | |
| AAGATGTCAACTGTTCAATC+AGG | - | chr2_1:14397257-14397276 | None:intergenic | 35.0% | |
| TTCATTTAGTTGAAGGAGCA+TGG | + | chr2_1:14397355-14397374 | Msa0196840:intron | 35.0% | |
| AGTTGAATAGGAATGCCATT+GGG | - | chr2_1:14397460-14397479 | None:intergenic | 35.0% | |
| TAGTTGAATAGGAATGCCAT+TGG | - | chr2_1:14397461-14397480 | None:intergenic | 35.0% | |
| TATTGTGAGAGCTCCATATT+GGG | + | chr2_1:14397611-14397630 | Msa0196840:intron | 35.0% | |
| GTCAACTCGACTTAAATTAG+TGG | + | chr2_1:14397633-14397652 | Msa0196840:intron | 35.0% | |
| ! | GACTTAAATTAGTGGGTGTT+TGG | + | chr2_1:14397641-14397660 | Msa0196840:intron | 35.0% |
| TTGCAGCTTCAAGAAAATTG+CGG | - | chr2_1:14397710-14397729 | None:intergenic | 35.0% | |
| ! | TGTGGTTGTAACGTGAATTT+TGG | + | chr2_1:14397750-14397769 | Msa0196840:intron | 35.0% |
| AATACCAAACACAGACTTAG+TGG | + | chr2_1:14397774-14397793 | Msa0196840:intron | 35.0% | |
| ! | AAAGGGTATGCATGATACAA+TGG | + | chr2_1:14397811-14397830 | Msa0196840:intron | 35.0% |
| ! | GCATCCATTTTACACGTAAA+TGG | - | chr2_1:14398183-14398202 | None:intergenic | 35.0% |
| AGAACTGCAGTTCAATTCAA+TGG | - | chr2_1:14398429-14398448 | None:intergenic | 35.0% | |
| ATTGAATTGAACTGCAGTTC+TGG | + | chr2_1:14398428-14398447 | Msa0196840:intron | 35.0% | |
| TAATTTATCCACCCAACAAC+AGG | - | chr2_1:14398454-14398473 | None:intergenic | 35.0% | |
| AAAACAACACGGAAATGAAG+AGG | - | chr2_1:14398487-14398506 | None:intergenic | 35.0% | |
| GAGAAAGACAGGAGAAAAAA+AGG | - | chr2_1:14398540-14398559 | None:intergenic | 35.0% | |
| !! | ATTTAGCGTGTTTGTTGTGT+TGG | - | chr2_1:14398655-14398674 | None:intergenic | 35.0% |
| TGGACACAACAAACTACTAA+AGG | - | chr2_1:14398844-14398863 | None:intergenic | 35.0% | |
| !! | TTTGGTTTGACCGGAGAAAT+GGG | - | chr2_1:14394808-14394827 | None:intergenic | 40.0% |
| ATGGGTTCTGTTGCAAAGAA+TGG | + | chr2_1:14394845-14394864 | Msa0196840:CDS | 40.0% | |
| ! | AGAACATCCTTTGAGAACCA+AGG | + | chr2_1:14394895-14394914 | Msa0196840:CDS | 40.0% |
| GGGTGAAGCAAAAACAAACA+TGG | - | chr2_1:14394977-14394996 | None:intergenic | 40.0% | |
| GTAAAACAGGTCATTACTGC+TGG | + | chr2_1:14395133-14395152 | Msa0196840:CDS | 40.0% | |
| ATAGTGTCTCAGAAGCTTAC+TGG | + | chr2_1:14395178-14395197 | Msa0196840:CDS | 40.0% | |
| !! | GGTTGATAAGTTAAAGGTGC+AGG | + | chr2_1:14395369-14395388 | Msa0196840:intron | 40.0% |
| CCCAATTTCAACTTACCCAA+AGG | + | chr2_1:14395724-14395743 | Msa0196840:intron | 40.0% | |
| ! | CCCTTTGGGTAAGTTGAAAT+TGG | - | chr2_1:14395728-14395747 | None:intergenic | 40.0% |
| TTCAACTTACCCAAAGGGTT+TGG | + | chr2_1:14395730-14395749 | Msa0196840:intron | 40.0% | |
| !! | TTACAGATTGATGGCGTGTT+TGG | - | chr2_1:14395802-14395821 | None:intergenic | 40.0% |
| ! | GCACTGACATTACAGATTGA+TGG | - | chr2_1:14395811-14395830 | None:intergenic | 40.0% |
| CTGTAATGTCAGTGCTACAT+AGG | + | chr2_1:14395816-14395835 | Msa0196840:intron | 40.0% | |
| !! | TTTTTGAGGAGAGGGTGAAT+TGG | + | chr2_1:14395926-14395945 | Msa0196840:intron | 40.0% |
| !! | TTTTTGAGGAGAGGGTGAAT+TGG | + | chr2_1:14395926-14395945 | Msa0196840:intron | 40.0% |
| !! | TTTTTGAGGAGAGGGTGAAT+TGG | + | chr2_1:14395926-14395945 | Msa0196840:intron | 40.0% |
| AACTTGTGCAGAGATCCAAA+AGG | + | chr2_1:14396145-14396164 | Msa0196840:intron | 40.0% | |
| CAACAATTAACATGAGTGCC+AGG | - | chr2_1:14396842-14396861 | None:intergenic | 40.0% | |
| CAGTTAACTCATGCAGTGTA+TGG | + | chr2_1:14396902-14396921 | Msa0196840:intron | 40.0% | |
| ACTCCTAATGCACACAACAA+AGG | + | chr2_1:14397164-14397183 | Msa0196840:intron | 40.0% | |
| ! | TCTCCTTTGTTGTGTGCATT+AGG | - | chr2_1:14397170-14397189 | None:intergenic | 40.0% |
| AATAGGAATGCCATTGGGTT+GGG | - | chr2_1:14397455-14397474 | None:intergenic | 40.0% | |
| TAAGGTCTCTTGTCACATGT+TGG | + | chr2_1:14397588-14397607 | Msa0196840:intron | 40.0% | |
| GTATTGTGAGAGCTCCATAT+TGG | + | chr2_1:14397610-14397629 | Msa0196840:intron | 40.0% | |
| !! | TAAGTCGAGTTGACCCAATA+TGG | - | chr2_1:14397627-14397646 | None:intergenic | 40.0% |
| ! | TGGGTGTTTGGTAATCAAGT+GGG | + | chr2_1:14397653-14397672 | Msa0196840:intron | 40.0% |
| CAAGAAAATTGCGGTGGAAA+GGG | - | chr2_1:14397701-14397720 | None:intergenic | 40.0% | |
| TCAAGAAAATTGCGGTGGAA+AGG | - | chr2_1:14397702-14397721 | None:intergenic | 40.0% | |
| AAGACCACTAAGTCTGTGTT+TGG | - | chr2_1:14397781-14397800 | None:intergenic | 40.0% | |
| ! | TTCACCTGTCTGATGATGAT+TGG | + | chr2_1:14397884-14397903 | Msa0196840:intron | 40.0% |
| GTGTAAAATGGATGCCTTGT+TGG | + | chr2_1:14398188-14398207 | Msa0196840:intron | 40.0% | |
| TGTGAAAGCTAGAGTGAAGA+AGG | + | chr2_1:14398261-14398280 | Msa0196840:CDS | 40.0% | |
| GTGAAAGCTAGAGTGAAGAA+GGG | + | chr2_1:14398262-14398281 | Msa0196840:CDS | 40.0% | |
| CTAAGCTGTGGAAAACAACA+CGG | - | chr2_1:14398498-14398517 | None:intergenic | 40.0% | |
| AGACAAATGCTACTAAGCTG+TGG | - | chr2_1:14398510-14398529 | None:intergenic | 40.0% | |
| ACAGCTTAGTAGCATTTGTC+TGG | + | chr2_1:14398509-14398528 | Msa0196840:CDS | 40.0% | |
| TATGAGCATCTAACCGGTAA+TGG | - | chr2_1:14398997-14399016 | None:intergenic | 40.0% | |
| !! | GTTTGGTTTGACCGGAGAAA+TGG | - | chr2_1:14394809-14394828 | None:intergenic | 45.0% |
| !! | GTTCGGTTGTTTGGTTTGAC+CGG | - | chr2_1:14394817-14394836 | None:intergenic | 45.0% |
| CAAACCAAACAACCGAACAG+AGG | + | chr2_1:14394819-14394838 | Msa0196840:five_prime_UTR | 45.0% | |
| TCTTCCTCTGTTCGGTTGTT+TGG | - | chr2_1:14394826-14394845 | None:intergenic | 45.0% | |
| AACAACCGAACAGAGGAAGA+TGG | + | chr2_1:14394826-14394845 | Msa0196840:exon | 45.0% | |
| ACAACCGAACAGAGGAAGAT+GGG | + | chr2_1:14394827-14394846 | Msa0196840:exon | 45.0% | |
| AGAACCCATCTTCCTCTGTT+CGG | - | chr2_1:14394834-14394853 | None:intergenic | 45.0% | |
| ATTACTGCTGGTGTGTTGTC+AGG | + | chr2_1:14395145-14395164 | Msa0196840:CDS | 45.0% | |
| TTACTGCTGGTGTGTTGTCA+GGG | + | chr2_1:14395146-14395165 | Msa0196840:CDS | 45.0% | |
| ! | ATAGTGCTGGAACAGCAACT+CGG | + | chr2_1:14395466-14395485 | Msa0196840:intron | 45.0% |
| AATATCAGCTGCCCTAGAGT+CGG | - | chr2_1:14395582-14395601 | None:intergenic | 45.0% | |
| CTAGGGCAGCTGATATTTGT+CGG | + | chr2_1:14395585-14395604 | Msa0196840:intron | 45.0% | |
| ACCACTAGTCCAAACCCTTT+GGG | - | chr2_1:14395742-14395761 | None:intergenic | 45.0% | |
| TGTACATGGATGTTCTCACG+TGG | + | chr2_1:14395871-14395890 | Msa0196840:intron | 45.0% | |
| ATGCAATTCATGGCTAGGTG+TGG | + | chr2_1:14395972-14395991 | Msa0196840:intron | 45.0% | |
| ATGAATTGCATCATCCCTGC+CGG | - | chr2_1:14396041-14396060 | None:intergenic | 45.0% | |
| GGATGATGCAATTCATGGCT+AGG | + | chr2_1:14396045-14396064 | Msa0196840:intron | 45.0% | |
| ATGCAATTCATGGCTAGGTG+TGG | + | chr2_1:14395972-14395991 | Msa0196840:intron | 45.0% | |
| !! | TGAGTCTGACTTTGGCCTTT+TGG | - | chr2_1:14396163-14396182 | None:intergenic | 45.0% |
| GTTGCTGCTAATCGTAGCTT+TGG | + | chr2_1:14396464-14396483 | Msa0196840:intron | 45.0% | |
| CTTCTTGGAGCTGGTTATCT+TGG | + | chr2_1:14396678-14396697 | Msa0196840:CDS | 45.0% | |
| CTGGTTATCTTGGACCGTTT+GGG | + | chr2_1:14396688-14396707 | Msa0196840:CDS | 45.0% | |
| CTATGACCTAAATTCAGGCC+TGG | + | chr2_1:14396821-14396840 | Msa0196840:intron | 45.0% | |
| AAATAGGCTACCCAACCCAA+TGG | + | chr2_1:14397442-14397461 | Msa0196840:intron | 45.0% | |
| GAATAGGAATGCCATTGGGT+TGG | - | chr2_1:14397456-14397475 | None:intergenic | 45.0% | |
| ! | GTGGGTGTTTGGTAATCAAG+TGG | + | chr2_1:14397652-14397671 | Msa0196840:intron | 45.0% |
| GAAAGGGTTTAAACGTGAGG+TGG | - | chr2_1:14397685-14397704 | None:intergenic | 45.0% | |
| GTGGAAAGGGTTTAAACGTG+AGG | - | chr2_1:14397688-14397707 | None:intergenic | 45.0% | |
| CAGCTTCAAGAAAATTGCGG+TGG | - | chr2_1:14397707-14397726 | None:intergenic | 45.0% | |
| GATACAATGGACCTGACTCT+CGG | + | chr2_1:14397824-14397843 | Msa0196840:intron | 45.0% | |
| TTTCTTTACCTCCGAGAGTC+AGG | - | chr2_1:14397838-14397857 | None:intergenic | 45.0% | |
| CCATCCAATCATCATCAGAC+AGG | - | chr2_1:14397891-14397910 | None:intergenic | 45.0% | |
| ! | CCTGTCTGATGATGATTGGA+TGG | + | chr2_1:14397888-14397907 | Msa0196840:intron | 45.0% |
| CTTTCACATTGACCCAAGGT+TGG | - | chr2_1:14398249-14398268 | None:intergenic | 45.0% | |
| ! | CTAGCTTTCACATTGACCCA+AGG | - | chr2_1:14398253-14398272 | None:intergenic | 45.0% |
| CATGATGCTTTCTGCACTGA+TGG | - | chr2_1:14398292-14398311 | None:intergenic | 45.0% | |
| !! | CATCAGTGCAGAAAGCATCA+TGG | + | chr2_1:14398290-14398309 | Msa0196840:CDS | 45.0% |
| !! | AGTGCAGAAAGCATCATGGA+CGG | + | chr2_1:14398294-14398313 | Msa0196840:CDS | 45.0% |
| AGGAAAGTTGGGAGAAAGAC+AGG | - | chr2_1:14398551-14398570 | None:intergenic | 45.0% | |
| GCTATAGACTAACGGCTGTT+TGG | + | chr2_1:14398617-14398636 | Msa0196840:intron | 45.0% | |
| !! | CGTGTTTGTTGTGTTGGTGT+TGG | - | chr2_1:14398649-14398668 | None:intergenic | 45.0% |
| ATGTCATAGATCGTGCTCGA+AGG | - | chr2_1:14398759-14398778 | None:intergenic | 45.0% | |
| ACAGACGCAACCCATTTCTC+CGG | + | chr2_1:14394795-14394814 | Msa0196840:five_prime_UTR | 50.0% | |
| ! | GCAGGGTTTAAGTTCTGACG+AGG | + | chr2_1:14395387-14395406 | Msa0196840:intron | 50.0% |
| TGCCTACATCTCCGACTCTA+GGG | + | chr2_1:14395568-14395587 | Msa0196840:intron | 50.0% | |
| ! | ACCCAAAGGGTTTGGACTAG+TGG | + | chr2_1:14395738-14395757 | Msa0196840:intron | 50.0% |
| GACCACTAGTCCAAACCCTT+TGG | - | chr2_1:14395743-14395762 | None:intergenic | 50.0% | |
| GCGTCTAACACAGACACATG+TGG | - | chr2_1:14395780-14395799 | None:intergenic | 50.0% | |
| CATGGATGTTCTCACGTGGA+AGG | + | chr2_1:14395875-14395894 | Msa0196840:intron | 50.0% | |
| GTGAATTGGTACAAGTCCCC+CGG | + | chr2_1:14395940-14395959 | Msa0196840:intron | 50.0% | |
| GACGGATGCAATTCATGGCT+AGG | + | chr2_1:14395967-14395986 | Msa0196840:intron | 50.0% | |
| GTGAATTGGTACAAGTCCCC+CGG | + | chr2_1:14395940-14395959 | Msa0196840:intron | 50.0% | |
| TGAATTGCATCATCCCTGCC+GGG | - | chr2_1:14396040-14396059 | None:intergenic | 50.0% | |
| GGCAGGGATGATGCAATTCA+TGG | + | chr2_1:14396040-14396059 | Msa0196840:intron | 50.0% | |
| GCTGGTTATCTTGGACCGTT+TGG | + | chr2_1:14396687-14396706 | Msa0196840:CDS | 50.0% | |
| TGAGTGCCAGGCCTGAATTT+AGG | - | chr2_1:14396830-14396849 | None:intergenic | 50.0% | |
| ! | GTTAGCTTCAGCTGAACGTG+TGG | + | chr2_1:14397732-14397751 | Msa0196840:intron | 50.0% |
| ! | TGCAGTTCTGGCCTGTTGTT+GGG | + | chr2_1:14398440-14398459 | Msa0196840:intron | 50.0% |
| !! | TGTTGTGTTGGTGTTGGCAG+AGG | - | chr2_1:14398643-14398662 | None:intergenic | 50.0% |
| GTGCCTACATCTCCGACTCT+AGG | + | chr2_1:14395567-14395586 | Msa0196840:intron | 55.0% | |
| TGCCCTAGAGTCGGAGATGT+AGG | - | chr2_1:14395573-14395592 | None:intergenic | 55.0% | |
| TGAATTGCATCCGTCCCTGC+CGG | - | chr2_1:14395962-14395981 | None:intergenic | 55.0% | |
| GCAGGGACGGATGCAATTCA+TGG | + | chr2_1:14395962-14395981 | Msa0196840:intron | 55.0% | |
| AATTGCATCATCCCTGCCGG+GGG | - | chr2_1:14396038-14396057 | None:intergenic | 55.0% | |
| GAATTGCATCATCCCTGCCG+GGG | - | chr2_1:14396039-14396058 | None:intergenic | 55.0% | |
| ATCCTTCAGCGACAGTGCAC+CGG | - | chr2_1:14396123-14396142 | None:intergenic | 55.0% | |
| TGGATGCAGCTTCTTGGAGC+TGG | + | chr2_1:14396669-14396688 | Msa0196840:intron | 55.0% | |
| ACAATGGACCTGACTCTCGG+AGG | + | chr2_1:14397827-14397846 | Msa0196840:intron | 55.0% | |
| !! | AGTGGATTGCAGGCCAACCT+TGG | + | chr2_1:14398233-14398252 | Msa0196840:intron | 55.0% |
| ! | GTGGATTGCAGGCCAACCTT+GGG | + | chr2_1:14398234-14398253 | Msa0196840:intron | 55.0% |
| ! | CTGCAGTTCTGGCCTGTTGT+TGG | + | chr2_1:14398439-14398458 | Msa0196840:intron | 55.0% |
| ! | AGTTCTGGCCTGTTGTTGGG+TGG | + | chr2_1:14398443-14398462 | Msa0196840:intron | 55.0% |
| ATTGGTACAAGTCCCCCGGC+AGG | + | chr2_1:14395944-14395963 | Msa0196840:intron | 60.0% | |
| TTGGTACAAGTCCCCCGGCA+GGG | + | chr2_1:14395945-14395964 | Msa0196840:intron | 60.0% | |
| AATTGCATCCGTCCCTGCCG+GGG | - | chr2_1:14395960-14395979 | None:intergenic | 60.0% | |
| GAATTGCATCCGTCCCTGCC+GGG | - | chr2_1:14395961-14395980 | None:intergenic | 60.0% | |
| ATTGGTACAAGTCCCCCGGC+AGG | + | chr2_1:14395944-14395963 | Msa0196840:intron | 60.0% | |
| TTGGTACAAGTCCCCCGGCA+GGG | + | chr2_1:14395945-14395964 | Msa0196840:intron | 60.0% | |
| ATTGGTACAAGTCCCCGCCC+CGG | + | chr2_1:14396101-14396120 | Msa0196840:intron | 60.0% | |
| TCCTTCAGCGACAGTGCACC+GGG | - | chr2_1:14396122-14396141 | None:intergenic | 60.0% | |
| GGTGCACTGTCGCTGAAGGA+TGG | + | chr2_1:14396122-14396141 | Msa0196840:intron | 60.0% | |
| TACAAGTCCCCCGGCAGGGA+CGG | + | chr2_1:14395949-14395968 | Msa0196840:intron | 65.0% | |
| ATTGCATCCGTCCCTGCCGG+GGG | - | chr2_1:14395959-14395978 | None:intergenic | 65.0% | |
| CCTTCAGCGACAGTGCACCG+GGG | - | chr2_1:14396121-14396140 | None:intergenic | 65.0% | |
| TCAGCGACAGTGCACCGGGG+CGG | - | chr2_1:14396118-14396137 | None:intergenic | 70.0% | |
| CCCCGGTGCACTGTCGCTGA+AGG | + | chr2_1:14396118-14396137 | Msa0196840:intron | 70.0% | |
| AGCGACAGTGCACCGGGGCG+GGG | - | chr2_1:14396116-14396135 | None:intergenic | 75.0% | |
| CAGCGACAGTGCACCGGGGC+GGG | - | chr2_1:14396117-14396136 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 14394712 | 14399123 | 14394712 | ID=Msa0196840;Name=Msa0196840 |
| chr2_1 | mRNA | 14394712 | 14399123 | 14394712 | ID=Msa0196840-mRNA-1;Parent=Msa0196840;Name=Msa0196840-mRNA-1;_AED=0.14;_eAED=0.14;_QI=133|0.66|0.85|1|0.83|1|7|331|190 |
| chr2_1 | exon | 14394712 | 14394916 | 14394712 | ID=Msa0196840-mRNA-1:exon:6114;Parent=Msa0196840-mRNA-1 |
| chr2_1 | exon | 14395103 | 14395216 | 14395103 | ID=Msa0196840-mRNA-1:exon:6115;Parent=Msa0196840-mRNA-1 |
| chr2_1 | exon | 14396678 | 14396779 | 14396678 | ID=Msa0196840-mRNA-1:exon:6116;Parent=Msa0196840-mRNA-1 |
| chr2_1 | exon | 14397252 | 14397327 | 14397252 | ID=Msa0196840-mRNA-1:exon:6117;Parent=Msa0196840-mRNA-1 |
| chr2_1 | exon | 14398245 | 14398315 | 14398245 | ID=Msa0196840-mRNA-1:exon:6118;Parent=Msa0196840-mRNA-1 |
| chr2_1 | exon | 14398445 | 14398530 | 14398445 | ID=Msa0196840-mRNA-1:exon:6119;Parent=Msa0196840-mRNA-1 |
| chr2_1 | exon | 14398741 | 14399123 | 14398741 | ID=Msa0196840-mRNA-1:exon:6120;Parent=Msa0196840-mRNA-1 |
| chr2_1 | five_prime_UTR | 14394712 | 14394844 | 14394712 | ID=Msa0196840-mRNA-1:five_prime_utr;Parent=Msa0196840-mRNA-1 |
| chr2_1 | CDS | 14394845 | 14394916 | 14394845 | ID=Msa0196840-mRNA-1:cds;Parent=Msa0196840-mRNA-1 |
| chr2_1 | CDS | 14395103 | 14395216 | 14395103 | ID=Msa0196840-mRNA-1:cds;Parent=Msa0196840-mRNA-1 |
| chr2_1 | CDS | 14396678 | 14396779 | 14396678 | ID=Msa0196840-mRNA-1:cds;Parent=Msa0196840-mRNA-1 |
| chr2_1 | CDS | 14397252 | 14397327 | 14397252 | ID=Msa0196840-mRNA-1:cds;Parent=Msa0196840-mRNA-1 |
| chr2_1 | CDS | 14398245 | 14398315 | 14398245 | ID=Msa0196840-mRNA-1:cds;Parent=Msa0196840-mRNA-1 |
| chr2_1 | CDS | 14398445 | 14398530 | 14398445 | ID=Msa0196840-mRNA-1:cds;Parent=Msa0196840-mRNA-1 |
| chr2_1 | CDS | 14398741 | 14398792 | 14398741 | ID=Msa0196840-mRNA-1:cds;Parent=Msa0196840-mRNA-1 |
| chr2_1 | three_prime_UTR | 14398793 | 14399123 | 14398793 | ID=Msa0196840-mRNA-1:three_prime_utr;Parent=Msa0196840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
