Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057680 | XP_003588470.1 | 86.353 | 447 | 27 | 3 | 1 | 413 | 1 | 447 | 0.0 | 743 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057680 | sp|Q94BY9|GAP22_ARATH | 44.355 | 372 | 118 | 9 | 62 | 409 | 90 | 396 | 4.05e-84 | 270 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057680 | G7I3D6 | 86.353 | 447 | 27 | 3 | 1 | 413 | 1 | 447 | 0.0 | 743 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006380 | Msa0057680 | -0.821159 | 4.683234e-53 | -8.615850e-47 |
| Msa0007440 | Msa0057680 | -0.807851 | 4.130370e-50 | -8.615850e-47 |
| Msa0011170 | Msa0057680 | -0.801476 | 8.843069e-49 | -8.615850e-47 |
| Msa0037570 | Msa0057680 | 0.805846 | 1.096036e-49 | -8.615850e-47 |
| Msa0044000 | Msa0057680 | -0.812242 | 4.679359e-51 | -8.615850e-47 |
| Msa0044540 | Msa0057680 | 0.803259 | 3.796713e-49 | -8.615850e-47 |
| Msa0053010 | Msa0057680 | -0.800905 | 1.157329e-48 | -8.615850e-47 |
| Msa0054730 | Msa0057680 | 0.809516 | 1.820643e-50 | -8.615850e-47 |
| Msa0057680 | Msa0063350 | 0.805045 | 1.613489e-49 | -8.615850e-47 |
| Msa0057680 | Msa0068740 | 0.857535 | 1.527541e-62 | -8.615850e-47 |
| Msa0057680 | Msa0075880 | -0.817207 | 3.716493e-52 | -8.615850e-47 |
| Msa0057680 | Msa0076320 | -0.814254 | 1.691690e-51 | -8.615850e-47 |
| Msa0057680 | Msa0079070 | -0.828141 | 1.060303e-54 | -8.615850e-47 |
| Msa0057680 | Msa0084380 | -0.815872 | 7.398618e-52 | -8.615850e-47 |
| Msa0057680 | Msa0105260 | -0.806235 | 9.075523e-50 | -8.615850e-47 |
| Msa0057680 | Msa0114060 | -0.806443 | 8.206370e-50 | -8.615850e-47 |
| Msa0057680 | Msa0127650 | -0.817847 | 2.666294e-52 | -8.615850e-47 |
| Msa0057680 | Msa0131770 | -0.805566 | 1.255158e-49 | -8.615850e-47 |
| Msa0057680 | Msa0180500 | -0.807999 | 3.841183e-50 | -8.615850e-47 |
| Msa0057680 | Msa0194950 | 0.820944 | 5.247198e-53 | -8.615850e-47 |
| Msa0057680 | Msa0196840 | -0.805923 | 1.055753e-49 | -8.615850e-47 |
| Msa0057680 | Msa0204940 | -0.809472 | 1.860753e-50 | -8.615850e-47 |
| Msa0057680 | Msa0211150 | -0.812240 | 4.682741e-51 | -8.615850e-47 |
| Msa0057680 | Msa0220580 | -0.812694 | 3.727647e-51 | -8.615850e-47 |
| Msa0057680 | Msa0220740 | -0.805558 | 1.259561e-49 | -8.615850e-47 |
| Msa0057680 | Msa0233630 | 0.801154 | 1.029166e-48 | -8.615850e-47 |
| Msa0057680 | Msa0260680 | -0.831288 | 1.816905e-55 | -8.615850e-47 |
| Msa0057680 | Msa0280090 | -0.836487 | 9.093793e-57 | -8.615850e-47 |
| Msa0057680 | Msa0306210 | 0.830598 | 2.683583e-55 | -8.615850e-47 |
| Msa0057680 | Msa0315440 | 0.809948 | 1.470100e-50 | -8.615850e-47 |
| Msa0057680 | Msa0342750 | -0.846390 | 2.237888e-59 | -8.615850e-47 |
| Msa0057680 | Msa0383800 | -0.825327 | 4.980813e-54 | -8.615850e-47 |
| Msa0057680 | Msa0390400 | 0.816453 | 5.487279e-52 | -8.615850e-47 |
| Msa0057680 | Msa0405370 | -0.801305 | 9.588722e-49 | -8.615850e-47 |
| Msa0057680 | Msa0416300 | -0.815379 | 9.526318e-52 | -8.615850e-47 |
| Msa0057680 | Msa0434000 | -0.807972 | 3.891882e-50 | -8.615850e-47 |
| Msa0057680 | Msa0434180 | -0.824133 | 9.520969e-54 | -8.615850e-47 |
| Msa0057680 | Msa0436490 | 0.809751 | 1.620385e-50 | -8.615850e-47 |
| Msa0057680 | Msa0453350 | -0.827636 | 1.402499e-54 | -8.615850e-47 |
| Msa0057680 | Msa0459260 | -0.815903 | 7.283212e-52 | -8.615850e-47 |
| Msa0057680 | Msa0460400 | 0.814274 | 1.674572e-51 | -8.615850e-47 |
| Msa0057680 | Msa0472960 | 0.813789 | 2.142245e-51 | -8.615850e-47 |
| Msa0057680 | Msa0479970 | -0.807925 | 3.982774e-50 | -8.615850e-47 |
| Msa0057680 | Msa0493000 | -0.804527 | 2.069584e-49 | -8.615850e-47 |
| Msa0057680 | Msa0502880 | -0.800690 | 1.280360e-48 | -8.615850e-47 |
| Msa0057680 | Msa0519000 | -0.807861 | 4.110476e-50 | -8.615850e-47 |
| Msa0057680 | Msa0528020 | 0.802639 | 5.098752e-49 | -8.615850e-47 |
| Msa0057680 | Msa0529040 | -0.818227 | 2.188569e-52 | -8.615850e-47 |
| Msa0057680 | Msa0548240 | -0.809512 | 1.824047e-50 | -8.615850e-47 |
| Msa0057680 | Msa0578860 | -0.810603 | 1.061846e-50 | -8.615850e-47 |
| Msa0057680 | Msa0585000 | 0.800819 | 1.204885e-48 | -8.615850e-47 |
| Msa0057680 | Msa0587910 | -0.835767 | 1.385643e-56 | -8.615850e-47 |
| Msa0057680 | Msa0602390 | -0.812691 | 3.732381e-51 | -8.615850e-47 |
| Msa0057680 | Msa0610430 | -0.820650 | 6.133238e-53 | -8.615850e-47 |
| Msa0057680 | Msa0616160 | -0.802612 | 5.166297e-49 | -8.615850e-47 |
| Msa0057680 | Msa0626090 | -0.819992 | 8.678002e-53 | -8.615850e-47 |
| Msa0057680 | Msa0649110 | -0.837041 | 6.569197e-57 | -8.615850e-47 |
| Msa0057680 | Msa0649490 | -0.822180 | 2.719252e-53 | -8.615850e-47 |
| Msa0057680 | Msa0657580 | -0.814067 | 1.860534e-51 | -8.615850e-47 |
| Msa0057680 | Msa0661190 | 0.850913 | 1.248377e-60 | -8.615850e-47 |
| Msa0057680 | Msa0673460 | -0.804175 | 2.450419e-49 | -8.615850e-47 |
| Msa0057680 | Msa0679710 | -0.813602 | 2.355192e-51 | -8.615850e-47 |
| Msa0057680 | Msa0709400 | -0.809197 | 2.130984e-50 | -8.615850e-47 |
| Msa0057680 | Msa0740510 | -0.801754 | 7.756200e-49 | -8.615850e-47 |
| Msa0057680 | Msa0747060 | -0.821420 | 4.075624e-53 | -8.615850e-47 |
| Msa0057680 | Msa0748970 | -0.839615 | 1.425232e-57 | -8.615850e-47 |
| Msa0057680 | Msa0796700 | -0.823192 | 1.581072e-53 | -8.615850e-47 |
| Msa0057680 | Msa0800210 | -0.800533 | 1.378159e-48 | -8.615850e-47 |
| Msa0057680 | Msa0802830 | -0.802436 | 5.615995e-49 | -8.615850e-47 |
| Msa0057680 | Msa0808270 | -0.801396 | 9.182772e-49 | -8.615850e-47 |
| Msa0057680 | Msa0810220 | -0.809141 | 2.190599e-50 | -8.615850e-47 |
| Msa0057680 | Msa0820770 | -0.806817 | 6.841925e-50 | -8.615850e-47 |
| Msa0057680 | Msa0820850 | -0.827453 | 1.551885e-54 | -8.615850e-47 |
| Msa0057680 | Msa0827350 | 0.811379 | 7.211643e-51 | -8.615850e-47 |
| Msa0057680 | Msa0832340 | -0.823433 | 1.389062e-53 | -8.615850e-47 |
| Msa0057680 | Msa0835800 | -0.802405 | 5.698451e-49 | -8.615850e-47 |
| Msa0057680 | Msa0844490 | -0.803026 | 4.241661e-49 | -8.615850e-47 |
| Msa0057680 | Msa0849030 | -0.823585 | 1.279641e-53 | -8.615850e-47 |
| Msa0057680 | Msa0861090 | -0.802856 | 4.599878e-49 | -8.615850e-47 |
| Msa0057680 | Msa0861130 | -0.819956 | 8.843609e-53 | -8.615850e-47 |
| Msa0057680 | Msa0868700 | -0.802779 | 4.770599e-49 | -8.615850e-47 |
| Msa0057680 | Msa0901070 | -0.826113 | 3.241114e-54 | -8.615850e-47 |
| Msa0057680 | Msa0925870 | -0.804597 | 2.001846e-49 | -8.615850e-47 |
| Msa0057680 | Msa0932830 | -0.857301 | 1.791980e-62 | -8.615850e-47 |
| Msa0057680 | Msa0942550 | 0.816161 | 6.378376e-52 | -8.615850e-47 |
| Msa0057680 | Msa0942560 | 0.818637 | 1.766762e-52 | -8.615850e-47 |
| Msa0057680 | Msa0945970 | -0.800754 | 1.242544e-48 | -8.615850e-47 |
| Msa0057680 | Msa0947660 | -0.831946 | 1.251184e-55 | -8.615850e-47 |
| Msa0057680 | Msa0966750 | -0.812189 | 4.803768e-51 | -8.615850e-47 |
| Msa0057680 | Msa0969520 | -0.815311 | 9.865966e-52 | -8.615850e-47 |
| Msa0057680 | Msa0969810 | -0.824032 | 1.005385e-53 | -8.615850e-47 |
| Msa0057680 | Msa0974070 | -0.811526 | 6.699099e-51 | -8.615850e-47 |
| Msa0057680 | Msa0976670 | -0.815612 | 8.457850e-52 | -8.615850e-47 |
| Msa0057680 | Msa0993290 | -0.801003 | 1.105360e-48 | -8.615850e-47 |
| Msa0057680 | Msa0999050 | 0.808176 | 3.521907e-50 | -8.615850e-47 |
| Msa0057680 | Msa1014540 | -0.815613 | 8.451967e-52 | -8.615850e-47 |
| Msa0057680 | Msa1043390 | -0.808057 | 3.733146e-50 | -8.615850e-47 |
| Msa0057680 | Msa1048280 | 0.812186 | 4.812091e-51 | -8.615850e-47 |
| Msa0057680 | Msa1058710 | -0.804370 | 2.232340e-49 | -8.615850e-47 |
| Msa0057680 | Msa1063510 | -0.811931 | 5.469013e-51 | -8.615850e-47 |
| Msa0057680 | Msa1088950 | -0.800379 | 1.481925e-48 | -8.615850e-47 |
| Msa0057680 | Msa1109680 | -0.849704 | 2.725173e-60 | -8.615850e-47 |
| Msa0057680 | Msa1124960 | -0.806021 | 1.006970e-49 | -8.615850e-47 |
| Msa0057680 | Msa1150660 | -0.802986 | 4.324697e-49 | -8.615850e-47 |
| Msa0057680 | Msa1154280 | -0.814297 | 1.655487e-51 | -8.615850e-47 |
| Msa0057680 | Msa1167340 | -0.806481 | 8.057167e-50 | -8.615850e-47 |
| Msa0057680 | Msa1172400 | -0.805185 | 1.508384e-49 | -8.615850e-47 |
| Msa0057680 | Msa1174040 | -0.806245 | 9.032868e-50 | -8.615850e-47 |
| Msa0057680 | Msa1201430 | 0.819176 | 1.332519e-52 | -8.615850e-47 |
| Msa0057680 | Msa1241130 | 0.812877 | 3.397618e-51 | -8.615850e-47 |
| Msa0057680 | Msa1244720 | 0.803566 | 3.278919e-49 | -8.615850e-47 |
| Msa0057680 | Msa1249640 | 0.810516 | 1.108823e-50 | -8.615850e-47 |
| Msa0057680 | Msa1253020 | -0.808387 | 3.176043e-50 | -8.615850e-47 |
| Msa0057680 | Msa1254370 | 0.815401 | 9.419519e-52 | -8.615850e-47 |
| Msa0057680 | Msa1296280 | -0.800383 | 1.479127e-48 | -8.615850e-47 |
| Msa0057680 | Msa1305810 | -0.824107 | 9.656154e-54 | -8.615850e-47 |
| Msa0057680 | Msa1325860 | 0.841143 | 5.679936e-58 | -8.615850e-47 |
| Msa0057680 | Msa1332040 | 0.802285 | 6.031113e-49 | -8.615850e-47 |
| Msa0057680 | Msa1379500 | -0.801721 | 7.877909e-49 | -8.615850e-47 |
| Msa0057680 | Msa1403340 | -0.811258 | 7.660821e-51 | -8.615850e-47 |
| Msa0057680 | Msa1406110 | 0.804523 | 2.073326e-49 | -8.615850e-47 |
| Msa0057680 | Msa1412640 | -0.809380 | 1.947588e-50 | -8.615850e-47 |
| Msa0057680 | Msa1420820 | -0.800570 | 1.354650e-48 | -8.615850e-47 |
| Msa0057680 | Msa1424450 | -0.804573 | 2.024761e-49 | -8.615850e-47 |
| Msa0057680 | Msa1444740 | -0.813491 | 2.492067e-51 | -8.615850e-47 |
| Msa0057680 | Msa1445610 | 0.806517 | 7.915485e-50 | -8.615850e-47 |
| Msa0057680 | Msa1452240 | -0.822897 | 1.852745e-53 | -8.615850e-47 |
| Msa0057680 | Msa1453780 | 0.803536 | 3.326588e-49 | -8.615850e-47 |
| Msa0057680 | Msa1458750 | -0.815399 | 9.433441e-52 | -8.615850e-47 |
| Msa0057680 | Msa1466540 | -0.817515 | 3.168730e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057680 | MtrunA17_Chr1g0146661 | 86.353 | 447 | 27 | 3 | 1 | 413 | 1 | 447 | 0.0 | 743 |
| Msa0057680 | MtrunA17_Chr3g0127461 | 56.201 | 379 | 98 | 5 | 62 | 413 | 65 | 402 | 3.09e-128 | 381 |
| Msa0057680 | MtrunA17_Chr2g0329651 | 28.471 | 425 | 212 | 17 | 68 | 414 | 48 | 458 | 1.55e-25 | 109 |
| Msa0057680 | MtrunA17_Chr2g0319591 | 50.633 | 79 | 37 | 1 | 68 | 146 | 36 | 112 | 2.12e-18 | 87.0 |
| Msa0057680 | MtrunA17_Chr2g0319591 | 48.214 | 56 | 29 | 0 | 351 | 406 | 206 | 261 | 8.12e-12 | 66.6 |
| Msa0057680 | MtrunA17_Chr1g0183581 | 46.835 | 79 | 40 | 1 | 68 | 146 | 47 | 123 | 4.16e-17 | 82.8 |
| Msa0057680 | MtrunA17_Chr1g0183581 | 40.580 | 69 | 39 | 1 | 351 | 419 | 189 | 255 | 3.84e-11 | 64.7 |
| Msa0057680 | MtrunA17_Chr4g0064141 | 51.852 | 54 | 26 | 0 | 356 | 409 | 459 | 512 | 1.73e-13 | 72.4 |
| Msa0057680 | MtrunA17_Chr4g0041821 | 44.304 | 79 | 42 | 1 | 68 | 146 | 35 | 111 | 9.44e-12 | 66.6 |
| Msa0057680 | MtrunA17_Chr4g0041821 | 44.643 | 56 | 31 | 0 | 351 | 406 | 202 | 257 | 8.09e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0057680 | AT5G53570.2 | 43.207 | 368 | 128 | 7 | 62 | 409 | 117 | 423 | 8.66e-89 | 280 |
| Msa0057680 | AT5G24390.1 | 44.149 | 376 | 125 | 8 | 62 | 409 | 57 | 375 | 8.32e-86 | 271 |
| Msa0057680 | AT5G53570.1 | 44.355 | 372 | 118 | 9 | 62 | 409 | 90 | 396 | 4.12e-85 | 270 |
| Msa0057680 | AT3G49350.1 | 43.802 | 363 | 142 | 7 | 71 | 413 | 72 | 392 | 8.45e-83 | 264 |
| Msa0057680 | AT5G41940.1 | 39.723 | 433 | 170 | 13 | 19 | 413 | 28 | 407 | 5.18e-81 | 259 |
| Msa0057680 | AT2G20440.1 | 43.182 | 88 | 47 | 2 | 59 | 146 | 34 | 118 | 1.55e-15 | 78.6 |
| Msa0057680 | AT2G20440.2 | 43.182 | 88 | 47 | 2 | 59 | 146 | 34 | 118 | 1.55e-15 | 78.6 |
| Msa0057680 | AT2G20440.3 | 43.182 | 88 | 47 | 2 | 59 | 146 | 34 | 118 | 1.62e-15 | 77.8 |
| Msa0057680 | AT2G43490.1 | 44.872 | 78 | 42 | 1 | 68 | 145 | 50 | 126 | 4.12e-15 | 78.2 |
| Msa0057680 | AT2G43490.7 | 44.872 | 78 | 42 | 1 | 68 | 145 | 50 | 126 | 4.12e-15 | 78.2 |
| Msa0057680 | AT2G43490.3 | 44.872 | 78 | 42 | 1 | 68 | 145 | 50 | 126 | 4.12e-15 | 78.2 |
| Msa0057680 | AT2G43490.2 | 44.872 | 78 | 42 | 1 | 68 | 145 | 50 | 126 | 4.12e-15 | 78.2 |
| Msa0057680 | AT2G43490.4 | 44.872 | 78 | 42 | 1 | 68 | 145 | 50 | 126 | 4.30e-15 | 77.8 |
| Msa0057680 | AT2G43490.5 | 44.872 | 78 | 42 | 1 | 68 | 145 | 50 | 126 | 4.56e-15 | 77.8 |
| Msa0057680 | AT2G43490.6 | 44.872 | 78 | 42 | 1 | 68 | 145 | 46 | 122 | 4.95e-15 | 77.8 |
| Msa0057680 | AT2G43490.8 | 44.872 | 78 | 42 | 1 | 68 | 145 | 46 | 122 | 4.95e-15 | 77.8 |
| Msa0057680 | AT4G28550.3 | 40.909 | 88 | 49 | 2 | 59 | 146 | 34 | 118 | 1.19e-14 | 75.1 |
| Msa0057680 | AT4G28550.1 | 40.909 | 88 | 49 | 2 | 59 | 146 | 34 | 118 | 1.48e-14 | 75.5 |
| Msa0057680 | AT4G28550.2 | 40.909 | 88 | 49 | 2 | 59 | 146 | 34 | 118 | 1.71e-14 | 74.7 |
| Msa0057680 | AT3G59570.1 | 43.590 | 78 | 43 | 1 | 68 | 145 | 50 | 126 | 4.97e-14 | 74.7 |
| Msa0057680 | AT3G59570.2 | 43.590 | 78 | 43 | 1 | 68 | 145 | 50 | 126 | 5.36e-14 | 74.3 |
| Msa0057680 | AT3G59570.3 | 43.590 | 78 | 43 | 1 | 68 | 145 | 50 | 126 | 5.48e-14 | 74.3 |
| Msa0057680 | AT5G52580.2 | 39.437 | 71 | 43 | 0 | 339 | 409 | 467 | 537 | 6.54e-13 | 71.2 |
| Msa0057680 | AT5G52580.1 | 39.437 | 71 | 43 | 0 | 339 | 409 | 450 | 520 | 6.56e-13 | 71.2 |
| Msa0057680 | AT4G27100.2 | 37.805 | 82 | 45 | 2 | 330 | 406 | 172 | 252 | 7.36e-13 | 70.5 |
| Msa0057680 | AT4G27100.2 | 43.038 | 79 | 43 | 1 | 68 | 146 | 35 | 111 | 9.36e-12 | 67.0 |
| Msa0057680 | AT5G52580.3 | 39.437 | 71 | 43 | 0 | 339 | 409 | 456 | 526 | 7.40e-13 | 70.9 |
| Msa0057680 | AT5G54780.1 | 35.955 | 89 | 57 | 0 | 318 | 406 | 162 | 250 | 7.40e-13 | 70.5 |
| Msa0057680 | AT4G27100.1 | 48.214 | 56 | 29 | 0 | 351 | 406 | 197 | 252 | 8.58e-13 | 70.1 |
| Msa0057680 | AT4G27100.1 | 43.038 | 79 | 43 | 1 | 68 | 146 | 35 | 111 | 9.44e-12 | 67.0 |
Find 114 sgRNAs with CRISPR-Local
Find 363 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAGGATCACGAGGCTTTC+TGG | 0.173484 | 1_2:+13874780 | Msa0057680:CDS |
| TCTACCCTTGCGGCCGGTTT+TGG | 0.230656 | 1_2:-13870380 | None:intergenic |
| GCACTATATGACTCTGAAAT+TGG | 0.252631 | 1_2:+13874707 | Msa0057680:CDS |
| AACAGTAAGTTAAATGAAAT+TGG | 0.261328 | 1_2:+13873978 | Msa0057680:CDS |
| CAAACTTCAGCCCTTATTCT+AGG | 0.293493 | 1_2:-13873449 | None:intergenic |
| GAAGTTTGGCCTTTCCTACT+TGG | 0.299579 | 1_2:+13873464 | Msa0057680:CDS |
| GGAAGTCTCATCTCCCTTAC+AGG | 0.307078 | 1_2:+13874448 | Msa0057680:CDS |
| TCCAACGAATATTCAGCTTC+TGG | 0.313416 | 1_2:-13874122 | None:intergenic |
| TGAACTGTTTGAATTACTTC+AGG | 0.344067 | 1_2:-13874212 | None:intergenic |
| TACAGCATCTCTTTCATCAT+TGG | 0.353722 | 1_2:-13873727 | None:intergenic |
| GACTGCTGAGGCTGTTGGCT+TGG | 0.366549 | 1_2:+13874613 | Msa0057680:CDS |
| GGAGCTGTTTGAATTACTTC+AGG | 0.377034 | 1_2:-13874380 | None:intergenic |
| AGGGTGTTCATCCTAGAATA+AGG | 0.393643 | 1_2:+13873438 | Msa0057680:intron |
| AGCTCCTCCTGGTGATGTTC+AGG | 0.398389 | 1_2:+13874397 | Msa0057680:CDS |
| TGCTGAGGCTGTTGGCTTGG+AGG | 0.403153 | 1_2:+13874616 | Msa0057680:CDS |
| AAAAGCTTGTTTACAGAAGA+TGG | 0.412148 | 1_2:+13873278 | Msa0057680:CDS |
| CTAGAATAAGGGCTGAAGTT+TGG | 0.414102 | 1_2:+13873450 | Msa0057680:CDS |
| TGAAAGGAGTGAAACGGAAA+TGG | 0.420899 | 1_2:-13870193 | None:intergenic |
| CTGATGATGCAGCCAGTGCC+AGG | 0.422968 | 1_2:+13874072 | Msa0057680:CDS |
| CTCTGAAATTGGCTACTGCC+AGG | 0.424510 | 1_2:+13874718 | Msa0057680:CDS |
| TGCGAGAGAAATGGTACAAA+AGG | 0.424668 | 1_2:+13870260 | Msa0057680:five_prime_UTR |
| GTTGCCGCCGGTGCCAAAAC+CGG | 0.430972 | 1_2:+13870367 | Msa0057680:CDS |
| TTGAATTACTTCAGGAGCTT+CGG | 0.436302 | 1_2:-13874204 | None:intergenic |
| TCTTCATTAGTTGGTAGCTT+CGG | 0.441825 | 1_2:-13874482 | None:intergenic |
| AGTTCATCCTGATGATGTTC+AGG | 0.447157 | 1_2:+13874229 | Msa0057680:CDS |
| TCAGATATAATACTAACTAT+AGG | 0.447670 | 1_2:-13874761 | None:intergenic |
| GTCGTCTTCACCGCCCTCGC+CGG | 0.450443 | 1_2:+13870445 | Msa0057680:CDS |
| ATATCTTCCTGAACATCATC+AGG | 0.462427 | 1_2:-13874236 | None:intergenic |
| GTGGAGAAGTCTTCATTAGT+TGG | 0.463175 | 1_2:-13874491 | None:intergenic |
| TTTCCATTGCTGAGGTGAAA+GGG | 0.464441 | 1_2:-13873258 | None:intergenic |
| GAAGAATGATGCGAGAGAAA+TGG | 0.468436 | 1_2:+13870251 | Msa0057680:five_prime_UTR |
| GCCATTCTCTCTGTTGCCGC+CGG | 0.473574 | 1_2:+13870355 | Msa0057680:CDS |
| ACGACCGCTGGAGTAGAGTT+AGG | 0.479118 | 1_2:-13870427 | None:intergenic |
| GGAATCCCTGGCAATTCTCA+TGG | 0.480361 | 1_2:-13874348 | None:intergenic |
| CAATGCTGATGCATCTATGC+TGG | 0.494946 | 1_2:+13874169 | Msa0057680:CDS |
| GTCGGTGGTGAAGTGGGAGG+AGG | 0.495221 | 1_2:-13870326 | None:intergenic |
| ACCGGCGGCAACAGAGAGAA+TGG | 0.497704 | 1_2:-13870356 | None:intergenic |
| GGGTGTTCATCCTAGAATAA+GGG | 0.499248 | 1_2:+13873439 | Msa0057680:intron |
| TGAGTTTCCTGCATTGTCTA+CGG | 0.501107 | 1_2:-13873938 | None:intergenic |
| CAGGGAATTCCCGTCTAGCC+AGG | 0.508599 | 1_2:+13874091 | Msa0057680:CDS |
| AGGACCTTCAGTGGAATCCC+TGG | 0.509009 | 1_2:-13874360 | None:intergenic |
| GATGATTGATTGATTACGCA+TGG | 0.513136 | 1_2:-13870137 | None:intergenic |
| TCATTAGTTGGTAGCTTCGG+TGG | 0.513641 | 1_2:-13874479 | None:intergenic |
| AGACGGGAATTCCCTGGCAC+TGG | 0.515347 | 1_2:-13874084 | None:intergenic |
| CGTCAGACTGCTGAGGCTGT+TGG | 0.517440 | 1_2:+13874608 | Msa0057680:CDS |
| ATAGCAGGTCACTCATACCC+TGG | 0.521230 | 1_2:-13874736 | None:intergenic |
| ATTGGCGAAATCAGCTATGA+AGG | 0.523850 | 1_2:+13873996 | Msa0057680:CDS |
| AATTACTTCAGGACCTTCAG+TGG | 0.527735 | 1_2:-13874285 | None:intergenic |
| AATTACTTCAGGACCTTCAG+TGG | 0.527735 | 1_2:-13874369 | None:intergenic |
| TCCAGAAGCTGAATATTCGT+TGG | 0.527847 | 1_2:+13874121 | Msa0057680:CDS |
| AGGAGGATGTGTTCATCTCA+TGG | 0.528185 | 1_2:-13870309 | None:intergenic |
| GATAAATTCTGCTAGCCTCT+AGG | 0.528874 | 1_2:-13874649 | None:intergenic |
| GAATCCCTGGCAATTCTCAT+GGG | 0.529362 | 1_2:-13874347 | None:intergenic |
| AGGGCGGTGAAGACGACCGC+TGG | 0.529476 | 1_2:-13870439 | None:intergenic |
| ACAACCCCATGAGAATTGCC+AGG | 0.531720 | 1_2:+13874342 | Msa0057680:CDS |
| CTGGCTAGACGGGAATTCCC+TGG | 0.533589 | 1_2:-13874090 | None:intergenic |
| TAAGGGAGATGAGACTTCCT+TGG | 0.535684 | 1_2:-13874444 | None:intergenic |
| CGGTGCCAAAACCGGCCGCA+AGG | 0.536301 | 1_2:+13870375 | Msa0057680:CDS |
| GAGTCTGATAATCCGTTGCC+AGG | 0.539078 | 1_2:-13874513 | None:intergenic |
| TTCCATTGCTGAGGTGAAAG+GGG | 0.539622 | 1_2:-13873257 | None:intergenic |
| TTCAAGAATAGCAACTAGTC+GGG | 0.543109 | 1_2:-13874678 | None:intergenic |
| AGTTGTGTCGGTGGTGAAGT+GGG | 0.544520 | 1_2:-13870332 | None:intergenic |
| CAAGGGTAGATTCTCTCTCA+TGG | 0.544993 | 1_2:+13870393 | Msa0057680:CDS |
| AGAGAATCTACCCTTGCGGC+CGG | 0.547528 | 1_2:-13870386 | None:intergenic |
| ATCAGCTATGAAGGAGGTGA+TGG | 0.549643 | 1_2:+13874005 | Msa0057680:CDS |
| CTTCAAGAATAGCAACTAGT+CGG | 0.550202 | 1_2:-13874679 | None:intergenic |
| GTAATTCAAACAGCTCCTCC+TGG | 0.550982 | 1_2:+13874386 | Msa0057680:CDS |
| AGGACCTTCAGTGGAATCCT+CGG | 0.553753 | 1_2:-13874276 | None:intergenic |
| GCGAGAGAAATGGTACAAAA+GGG | 0.556560 | 1_2:+13870261 | Msa0057680:five_prime_UTR |
| AAGAACTCCGTAGACAATGC+AGG | 0.558162 | 1_2:+13873931 | Msa0057680:CDS |
| TATAAGGAGGCAACTAGAGT+TGG | 0.560463 | 1_2:+13874859 | Msa0057680:intron |
| CAGTTGTGTCGGTGGTGAAG+TGG | 0.561492 | 1_2:-13870333 | None:intergenic |
| TCCATTGCTGAGGTGAAAGG+GGG | 0.561826 | 1_2:-13873256 | None:intergenic |
| GACAGCGACGATAGCGACAC+CGG | 0.561997 | 1_2:-13870464 | None:intergenic |
| AAACATAGAAATAACTTGGA+AGG | 0.574892 | 1_2:+13870220 | Msa0057680:five_prime_UTR |
| TCTGAAATTGGCTACTGCCA+GGG | 0.579123 | 1_2:+13874719 | Msa0057680:CDS |
| AGAGAGAATGGCAGTTGTGT+CGG | 0.579452 | 1_2:-13870344 | None:intergenic |
| TACTAACTATAGGAGATAGC+AGG | 0.580560 | 1_2:-13874751 | None:intergenic |
| GACGATAGCGACACCGGCGA+GGG | 0.581275 | 1_2:-13870458 | None:intergenic |
| ATTGCCAGGGATTCCACTGA+AGG | 0.587470 | 1_2:+13874356 | Msa0057680:CDS |
| AAGACTTCTCCACCTGGCAA+CGG | 0.590930 | 1_2:+13874501 | Msa0057680:CDS |
| TCCTCCTGGTGATGTTCAGG+AGG | 0.594285 | 1_2:+13874400 | Msa0057680:CDS |
| TATAGTTAGTATTATATCTG+AGG | 0.596004 | 1_2:+13874763 | Msa0057680:CDS |
| GAAGCTGAATATTCGTTGGA+AGG | 0.596033 | 1_2:+13874125 | Msa0057680:CDS |
| GGTGCCAAAACCGGCCGCAA+GGG | 0.596960 | 1_2:+13870376 | Msa0057680:CDS |
| GGAACTTAGTTCCACCATCA+CGG | 0.599095 | 1_2:-13873307 | None:intergenic |
| GATGGTAGACTCCGTGATGG+TGG | 0.605442 | 1_2:+13873296 | Msa0057680:CDS |
| GGCATACTTACACTCCAAGT+AGG | 0.609422 | 1_2:-13873478 | None:intergenic |
| ACGACCGAGGATTCCACTGA+AGG | 0.611976 | 1_2:+13874272 | Msa0057680:CDS |
| TTATCCTCCTGAACATCACC+AGG | 0.613499 | 1_2:-13874404 | None:intergenic |
| ACTTACACTCCAAGTAGGAA+AGG | 0.619231 | 1_2:-13873473 | None:intergenic |
| GATAGCGACACCGGCGAGGG+CGG | 0.622332 | 1_2:-13870455 | None:intergenic |
| TGATGATGCAGCCAGTGCCA+GGG | 0.627455 | 1_2:+13874073 | Msa0057680:CDS |
| TTCCTGAAAAGAGTGCGCAA+TGG | 0.631766 | 1_2:+13873326 | Msa0057680:CDS |
| CGACGATAGCGACACCGGCG+AGG | 0.635561 | 1_2:-13870459 | None:intergenic |
| AGTAGAGTTAGGTGGTGTTG+CGG | 0.641427 | 1_2:-13870416 | None:intergenic |
| AATCCCTGGCAATTCTCATG+GGG | 0.645141 | 1_2:-13874346 | None:intergenic |
| CAACCCCATGAGAATTGCCA+GGG | 0.645332 | 1_2:+13874343 | Msa0057680:CDS |
| TCAATCAATCATCTAGAACG+TGG | 0.649435 | 1_2:+13870147 | Msa0057680:five_prime_UTR |
| CTAATGAAGACTTCTCCACC+TGG | 0.654850 | 1_2:+13874495 | Msa0057680:CDS |
| TATTATATCTGAGGATCACG+AGG | 0.658927 | 1_2:+13874772 | Msa0057680:CDS |
| TCTGATAATCCGTTGCCAGG+TGG | 0.661785 | 1_2:-13874510 | None:intergenic |
| GAGAATGGCAGTTGTGTCGG+TGG | 0.665810 | 1_2:-13870341 | None:intergenic |
| TGTGTCGGTGGTGAAGTGGG+AGG | 0.668382 | 1_2:-13870329 | None:intergenic |
| ACCACCTAACTCTACTCCAG+CGG | 0.673096 | 1_2:+13870423 | Msa0057680:CDS |
| GGCGAAATCAGCTATGAAGG+AGG | 0.686623 | 1_2:+13873999 | Msa0057680:CDS |
| GAAGATGGTAGACTCCGTGA+TGG | 0.689536 | 1_2:+13873293 | Msa0057680:CDS |
| CAATCCCATGAAAACGACCG+AGG | 0.690414 | 1_2:+13874259 | Msa0057680:CDS |
| TGTAGCACGTCAGACTGCTG+AGG | 0.694637 | 1_2:+13874601 | Msa0057680:intron |
| CAATCCCGTGAAAACTACCA+AGG | 0.696202 | 1_2:+13874427 | Msa0057680:CDS |
| ACCGCTGGAGTAGAGTTAGG+TGG | 0.697640 | 1_2:-13870424 | None:intergenic |
| GGAGGATTACGATCACCTAG+AGG | 0.707323 | 1_2:+13874634 | Msa0057680:CDS |
| TGAGAGAGAATCTACCCTTG+CGG | 0.708065 | 1_2:-13870390 | None:intergenic |
| TCCTCCTGAACATCACCAGG+AGG | 0.720302 | 1_2:-13874401 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATTATTAAAAAA+AGG | + | chr1_2:13871716-13871735 | Msa0057680:intron | 0.0% |
| !! | AATACATAAAAAATAAATGT+TGG | - | chr1_2:13871495-13871514 | None:intergenic | 10.0% |
| !! | ATAATATATATATGAGTAAT+TGG | - | chr1_2:13871709-13871728 | None:intergenic | 10.0% |
| !! | AAAAATTACAAAATAAAACT+GGG | + | chr1_2:13871739-13871758 | Msa0057680:intron | 10.0% |
| !!! | TAAGAATTTATTTTTTTTGA+AGG | + | chr1_2:13872980-13872999 | Msa0057680:intron | 10.0% |
| !!! | TAGTACTTTTAGTTTTAAAT+TGG | + | chr1_2:13870869-13870888 | Msa0057680:intron | 15.0% |
| !! | TTAAAGAGAATTTAAAAACA+AGG | - | chr1_2:13871323-13871342 | None:intergenic | 15.0% |
| !! | AACAAGCAATAAAATTAATT+AGG | - | chr1_2:13871605-13871624 | None:intergenic | 15.0% |
| !! | GAAAAATTACAAAATAAAAC+TGG | + | chr1_2:13871738-13871757 | Msa0057680:intron | 15.0% |
| !! | AAAATTACAAAATAAAACTG+GGG | + | chr1_2:13871740-13871759 | Msa0057680:intron | 15.0% |
| !! | TTAATTGTTACAATTGTTTA+GGG | - | chr1_2:13871843-13871862 | None:intergenic | 15.0% |
| !!! | ATTTAAAATGCAATCATATT+TGG | - | chr1_2:13872727-13872746 | None:intergenic | 15.0% |
| !!! | ATTGTTACTCATATTTTAAT+TGG | + | chr1_2:13873195-13873214 | Msa0057680:intron | 15.0% |
| !! | TAAAAATGAAATAGAAAGAA+TGG | - | chr1_2:13873502-13873521 | None:intergenic | 15.0% |
| !! | TTAATATACAATTATGCATT+AGG | + | chr1_2:13873576-13873595 | Msa0057680:intron | 15.0% |
| !! | CAAAGATATATAAATAATCT+GGG | - | chr1_2:13873787-13873806 | None:intergenic | 15.0% |
| !! | ACAAAGATATATAAATAATC+TGG | - | chr1_2:13873788-13873807 | None:intergenic | 15.0% |
| !!! | ATTTCTATGTTTTTTCTGAA+AGG | - | chr1_2:13870212-13870231 | None:intergenic | 20.0% |
| !! | GAAAAAACATAGAAATAACT+TGG | + | chr1_2:13870216-13870235 | Msa0057680:five_prime_UTR | 20.0% |
| !!! | AAGATTTTGTTATAGGAAAA+TGG | + | chr1_2:13870625-13870644 | Msa0057680:intron | 20.0% |
| !! | TTAAAACCAAAAAAGAAGTA+AGG | - | chr1_2:13870694-13870713 | None:intergenic | 20.0% |
| !!! | TTTTAATTTCGTATCGAAAA+GGG | + | chr1_2:13870708-13870727 | Msa0057680:intron | 20.0% |
| !!! | TTGTTTTATGATTTGAAACT+TGG | + | chr1_2:13870780-13870799 | Msa0057680:intron | 20.0% |
| !!! | CTTTTACTAACTAACATTAA+AGG | - | chr1_2:13870896-13870915 | None:intergenic | 20.0% |
| !! | AACCTTAATGTTAAATGAAA+TGG | + | chr1_2:13871189-13871208 | Msa0057680:intron | 20.0% |
| !! | ACAAATAAATTCCTAGTAAA+AGG | - | chr1_2:13871386-13871405 | None:intergenic | 20.0% |
| !!! | CAGATTTTTTAATATCAATC+TGG | - | chr1_2:13871440-13871459 | None:intergenic | 20.0% |
| !! | AAATTACAAAATAAAACTGG+GGG | + | chr1_2:13871741-13871760 | Msa0057680:intron | 20.0% |
| !! | CTTAATTGTTACAATTGTTT+AGG | - | chr1_2:13871844-13871863 | None:intergenic | 20.0% |
| !!! | TTGTCAAATTAATATTGACT+CGG | + | chr1_2:13872248-13872267 | Msa0057680:intron | 20.0% |
| !!! | TATTAGTGTTTCTGATTTTT+GGG | - | chr1_2:13873053-13873072 | None:intergenic | 20.0% |
| !! | TAAAGTATAGGTGAATAAAT+TGG | - | chr1_2:13873362-13873381 | None:intergenic | 20.0% |
| !! | AACAGTAAGTTAAATGAAAT+TGG | + | chr1_2:13873978-13873997 | Msa0057680:CDS | 20.0% |
| !! | TCAGATATAATACTAACTAT+AGG | - | chr1_2:13874764-13874783 | None:intergenic | 20.0% |
| !! | TATAGTTAGTATTATATCTG+AGG | + | chr1_2:13874763-13874782 | Msa0057680:CDS | 20.0% |
| ! | AAACATAGAAATAACTTGGA+AGG | + | chr1_2:13870220-13870239 | Msa0057680:five_prime_UTR | 25.0% |
| !! | TCGTGTTAATTATGAAGTTT+TGG | + | chr1_2:13870600-13870619 | Msa0057680:intron | 25.0% |
| !!! | TTTGGAGAAGATTTTGTTAT+AGG | + | chr1_2:13870618-13870637 | Msa0057680:intron | 25.0% |
| ! | TAGGAAAATGGATCTTTATT+TGG | + | chr1_2:13870637-13870656 | Msa0057680:intron | 25.0% |
| !!! | GTTTTAATTTCGTATCGAAA+AGG | + | chr1_2:13870707-13870726 | Msa0057680:intron | 25.0% |
| !!! | TGATTTGAAACTTGGATTTT+CGG | + | chr1_2:13870788-13870807 | Msa0057680:intron | 25.0% |
| ! | TTTGATCGAAATAAGGTAAA+GGG | - | chr1_2:13870953-13870972 | None:intergenic | 25.0% |
| ! | TTGAATGTGTATTGCTAAAT+TGG | + | chr1_2:13870993-13871012 | Msa0057680:intron | 25.0% |
| ! | TAAAAACTAGGGTTCATATT+CGG | + | chr1_2:13871036-13871055 | Msa0057680:intron | 25.0% |
| ! | TGTATGCAAGTAATCATATT+TGG | + | chr1_2:13871148-13871167 | Msa0057680:intron | 25.0% |
| ! | GACCATTTCATTTAACATTA+AGG | - | chr1_2:13871194-13871213 | None:intergenic | 25.0% |
| !!! | TTCAAATTGGTCTTTTTTGT+CGG | - | chr1_2:13871244-13871263 | None:intergenic | 25.0% |
| !!! | ACTAGTCTTTAGTTTCAAAT+TGG | - | chr1_2:13871257-13871276 | None:intergenic | 25.0% |
| ! | AATTACAAAATAAAACTGGG+GGG | + | chr1_2:13871742-13871761 | Msa0057680:intron | 25.0% |
| ! | AAAAACAAAAATCCACAAAG+TGG | + | chr1_2:13871811-13871830 | Msa0057680:intron | 25.0% |
| ! | ACAATTGTAACAATTAAGCA+CGG | + | chr1_2:13871846-13871865 | Msa0057680:intron | 25.0% |
| !! | CTTTTAATCTGCAATTTAGT+TGG | - | chr1_2:13872054-13872073 | None:intergenic | 25.0% |
| !! | GGAGAAATTTTATAGTATTC+TGG | + | chr1_2:13872817-13872836 | Msa0057680:intron | 25.0% |
| !!! | CTATTAGTGTTTCTGATTTT+TGG | - | chr1_2:13873054-13873073 | None:intergenic | 25.0% |
| !! | GAAGCACAAATTTAAAGTAT+AGG | - | chr1_2:13873374-13873393 | None:intergenic | 25.0% |
| !! | CATTTTAAATATCTGATGCA+GGG | + | chr1_2:13873419-13873438 | Msa0057680:intron | 25.0% |
| ! | TATACAATTATGCATTAGGA+AGG | + | chr1_2:13873580-13873599 | Msa0057680:intron | 25.0% |
| ! | AAAGAAAGGATAAGGTAAAT+AGG | - | chr1_2:13873616-13873635 | None:intergenic | 25.0% |
| ! | TCTAATAGAAAGAAAGGATA+AGG | - | chr1_2:13873624-13873643 | None:intergenic | 25.0% |
| ! | ATGCTGTAAAAACTCAAAAT+AGG | + | chr1_2:13873742-13873761 | Msa0057680:CDS | 25.0% |
| !!! | AACATCAGGTTGATTTTTTT+TGG | + | chr1_2:13873880-13873899 | Msa0057680:intron | 25.0% |
| !! | TTTTTCTGAAAGGAGTGAAA+CGG | - | chr1_2:13870202-13870221 | None:intergenic | 30.0% |
| AGAAAATAGATCGATCTAGT+TGG | - | chr1_2:13870524-13870543 | None:intergenic | 30.0% | |
| !! | GGTGTTGATGGTAAAATTAT+TGG | + | chr1_2:13870658-13870677 | Msa0057680:intron | 30.0% |
| !!! | CAAGTTCCTTACTTCTTTTT+TGG | + | chr1_2:13870685-13870704 | Msa0057680:intron | 30.0% |
| ! | ATACAAACTTTAAGTTCAGG+TGG | - | chr1_2:13870844-13870863 | None:intergenic | 30.0% |
| ! | CTGATACAAACTTTAAGTTC+AGG | - | chr1_2:13870847-13870866 | None:intergenic | 30.0% |
| GTTTGATCGAAATAAGGTAA+AGG | - | chr1_2:13870954-13870973 | None:intergenic | 30.0% | |
| AACTGAGTTTGATCGAAATA+AGG | - | chr1_2:13870960-13870979 | None:intergenic | 30.0% | |
| ATGTGTATTGCTAAATTGGT+AGG | + | chr1_2:13870997-13871016 | Msa0057680:intron | 30.0% | |
| TGTGTATTGCTAAATTGGTA+GGG | + | chr1_2:13870998-13871017 | Msa0057680:intron | 30.0% | |
| !!! | AGTTTTTAGAGCGTTGAATT+TGG | - | chr1_2:13871024-13871043 | None:intergenic | 30.0% |
| !! | AATTCAACGCTCTAAAAACT+AGG | + | chr1_2:13871024-13871043 | Msa0057680:intron | 30.0% |
| !! | ATTCAACGCTCTAAAAACTA+GGG | + | chr1_2:13871025-13871044 | Msa0057680:intron | 30.0% |
| AATCAAGAAATCGATCAGTT+AGG | - | chr1_2:13871075-13871094 | None:intergenic | 30.0% | |
| ! | TTTGAAACTAAAGACTAGTC+CGG | + | chr1_2:13871258-13871277 | Msa0057680:intron | 30.0% |
| TTAGAGTTTAACGTTTGTAC+CGG | - | chr1_2:13871280-13871299 | None:intergenic | 30.0% | |
| CCTAGTAAAAGGTAATTTAG+TGG | - | chr1_2:13871375-13871394 | None:intergenic | 30.0% | |
| ! | CCACTAAATTACCTTTTACT+AGG | + | chr1_2:13871372-13871391 | Msa0057680:intron | 30.0% |
| ! | AGCTTGTCTAATGTTCATTT+TGG | + | chr1_2:13871555-13871574 | Msa0057680:intron | 30.0% |
| !!! | GTTCATTTTGGAACTTAAGA+AGG | + | chr1_2:13871567-13871586 | Msa0057680:intron | 30.0% |
| ATTGGCAATAGATTAGAGTA+GGG | - | chr1_2:13871691-13871710 | None:intergenic | 30.0% | |
| AATTGGCAATAGATTAGAGT+AGG | - | chr1_2:13871692-13871711 | None:intergenic | 30.0% | |
| !!! | TTGTTTTATTTTGCCCGTTA+GGG | - | chr1_2:13871793-13871812 | None:intergenic | 30.0% |
| !!! | TTTGTTTTATTTTGCCCGTT+AGG | - | chr1_2:13871794-13871813 | None:intergenic | 30.0% |
| CAATTGTAACAATTAAGCAC+GGG | + | chr1_2:13871847-13871866 | Msa0057680:intron | 30.0% | |
| ! | CTTTCAAGCATTTTTCACAT+GGG | - | chr1_2:13871982-13872001 | None:intergenic | 30.0% |
| ! | ACTTTCAAGCATTTTTCACA+TGG | - | chr1_2:13871983-13872002 | None:intergenic | 30.0% |
| ATGTGAAAAATGCTTGAAAG+TGG | + | chr1_2:13871982-13872001 | Msa0057680:intron | 30.0% | |
| TGTGAAAAATGCTTGAAAGT+GGG | + | chr1_2:13871983-13872002 | Msa0057680:intron | 30.0% | |
| TAATTTGACAATGCACTGTT+AGG | - | chr1_2:13872239-13872258 | None:intergenic | 30.0% | |
| !! | TAATATTGACTCGGATAAGA+CGG | + | chr1_2:13872257-13872276 | Msa0057680:intron | 30.0% |
| TACAGTAATGCTCTATGTTA+TGG | + | chr1_2:13872769-13872788 | Msa0057680:intron | 30.0% | |
| AAAAGACTTCTACTAAGAGA+TGG | - | chr1_2:13872899-13872918 | None:intergenic | 30.0% | |
| !!! | TGATGACTAGACTTTTTCAA+TGG | + | chr1_2:13873091-13873110 | Msa0057680:intron | 30.0% |
| !!! | GATGACTAGACTTTTTCAAT+GGG | + | chr1_2:13873092-13873111 | Msa0057680:intron | 30.0% |
| !!! | ATGACTAGACTTTTTCAATG+GGG | + | chr1_2:13873093-13873112 | Msa0057680:intron | 30.0% |
| ! | AAAAGCTTGTTTACAGAAGA+TGG | + | chr1_2:13873278-13873297 | Msa0057680:CDS | 30.0% |
| !! | GTGCTTCTTTTGTTTCTTTT+TGG | + | chr1_2:13873387-13873406 | Msa0057680:intron | 30.0% |
| ! | GCATTTTAAATATCTGATGC+AGG | + | chr1_2:13873418-13873437 | Msa0057680:intron | 30.0% |
| ATTATGCATTAGGAAGGTTA+TGG | + | chr1_2:13873586-13873605 | Msa0057680:intron | 30.0% | |
| CAACAGTCTAATAGAAAGAA+AGG | - | chr1_2:13873630-13873649 | None:intergenic | 30.0% | |
| CTTTCTTTCTATTAGACTGT+TGG | + | chr1_2:13873628-13873647 | Msa0057680:intron | 30.0% | |
| TCTCAACATAAATGAAACAG+AGG | - | chr1_2:13873847-13873866 | None:intergenic | 30.0% | |
| TCTGTTTCATTTATGTTGAG+AGG | + | chr1_2:13873846-13873865 | Msa0057680:intron | 30.0% | |
| CTGTTTCATTTATGTTGAGA+GGG | + | chr1_2:13873847-13873866 | Msa0057680:intron | 30.0% | |
| TGAACTGTTTGAATTACTTC+AGG | - | chr1_2:13874215-13874234 | None:intergenic | 30.0% | |
| !! | AGAAAGCACGACAAAATTTT+AGG | + | chr1_2:13874822-13874841 | Msa0057680:CDS | 30.0% |
| ! | ACAAAATTTTAGGCTTGATG+AGG | + | chr1_2:13874832-13874851 | Msa0057680:CDS | 30.0% |
| GATGATTGATTGATTACGCA+TGG | - | chr1_2:13870140-13870159 | None:intergenic | 35.0% | |
| ! | TCAATCAATCATCTAGAACG+TGG | + | chr1_2:13870147-13870166 | Msa0057680:five_prime_UTR | 35.0% |
| !! | GGATCTTTATTTGGTGTTGA+TGG | + | chr1_2:13870646-13870665 | Msa0057680:intron | 35.0% |
| GGTACAAACGTTAAACTCTA+AGG | + | chr1_2:13871279-13871298 | Msa0057680:intron | 35.0% | |
| !! | TTTCTATGTCACTTTGCTCT+TGG | - | chr1_2:13871643-13871662 | None:intergenic | 35.0% |
| AGAATAGTGTCCAACTTAGT+TGG | + | chr1_2:13871663-13871682 | Msa0057680:intron | 35.0% | |
| GTGAAAAATGCTTGAAAGTG+GGG | + | chr1_2:13871984-13872003 | Msa0057680:intron | 35.0% | |
| TGAAAAATGCTTGAAAGTGG+GGG | + | chr1_2:13871985-13872004 | Msa0057680:intron | 35.0% | |
| TTTGTTAATTACCGTGTTGG+CGG | - | chr1_2:13872021-13872040 | None:intergenic | 35.0% | |
| !! | GGATTTGTTAATTACCGTGT+TGG | - | chr1_2:13872024-13872043 | None:intergenic | 35.0% |
| AACATCACAAATTTGTGCAC+TGG | - | chr1_2:13872095-13872114 | None:intergenic | 35.0% | |
| ATTTGTGATGTTTGCAAGCA+CGG | + | chr1_2:13872103-13872122 | Msa0057680:intron | 35.0% | |
| !! | AGTAAACTTGTTATCCGTGT+TGG | - | chr1_2:13872165-13872184 | None:intergenic | 35.0% |
| ACAAAAACAACGAGCATTCA+TGG | + | chr1_2:13872203-13872222 | Msa0057680:intron | 35.0% | |
| ! | AACGGTGTTCTTTTTGTTCA+CGG | - | chr1_2:13872426-13872445 | None:intergenic | 35.0% |
| GCTGTATCTAGTAGTACTTT+AGG | + | chr1_2:13872796-13872815 | Msa0057680:intron | 35.0% | |
| GTTATCCAAGCACTATAACT+CGG | - | chr1_2:13872866-13872885 | None:intergenic | 35.0% | |
| TTATAGTGCTTGGATAACGT+AGG | + | chr1_2:13872868-13872887 | Msa0057680:intron | 35.0% | |
| !!! | TGACTAGACTTTTTCAATGG+GGG | + | chr1_2:13873094-13873113 | Msa0057680:intron | 35.0% |
| CAATGGGGGAAAACAATAAT+AGG | + | chr1_2:13873108-13873127 | Msa0057680:intron | 35.0% | |
| TACACTTGTATGACTTAGAC+AGG | + | chr1_2:13873688-13873707 | Msa0057680:intron | 35.0% | |
| TACAGCATCTCTTTCATCAT+TGG | - | chr1_2:13873730-13873749 | None:intergenic | 35.0% | |
| TTCATTTATGTTGAGAGGGA+AGG | + | chr1_2:13873851-13873870 | Msa0057680:intron | 35.0% | |
| TCATTTATGTTGAGAGGGAA+GGG | + | chr1_2:13873852-13873871 | Msa0057680:intron | 35.0% | |
| TTGAATTACTTCAGGAGCTT+CGG | - | chr1_2:13874207-13874226 | None:intergenic | 35.0% | |
| ATATCTTCCTGAACATCATC+AGG | - | chr1_2:13874239-13874258 | None:intergenic | 35.0% | |
| !! | TCTTCATTAGTTGGTAGCTT+CGG | - | chr1_2:13874485-13874504 | None:intergenic | 35.0% |
| TTCAAGAATAGCAACTAGTC+GGG | - | chr1_2:13874681-13874700 | None:intergenic | 35.0% | |
| CTTCAAGAATAGCAACTAGT+CGG | - | chr1_2:13874682-13874701 | None:intergenic | 35.0% | |
| !! | GCACTATATGACTCTGAAAT+TGG | + | chr1_2:13874707-13874726 | Msa0057680:CDS | 35.0% |
| TACTAACTATAGGAGATAGC+AGG | - | chr1_2:13874754-13874773 | None:intergenic | 35.0% | |
| TATTATATCTGAGGATCACG+AGG | + | chr1_2:13874772-13874791 | Msa0057680:CDS | 35.0% | |
| ! | AAATTTTAGGCTTGATGAGG+TGG | + | chr1_2:13874835-13874854 | Msa0057680:intron | 35.0% |
| ! | AATTTTAGGCTTGATGAGGT+GGG | + | chr1_2:13874836-13874855 | Msa0057680:intron | 35.0% |
| TGAAAGGAGTGAAACGGAAA+TGG | - | chr1_2:13870196-13870215 | None:intergenic | 40.0% | |
| GAAGAATGATGCGAGAGAAA+TGG | + | chr1_2:13870251-13870270 | Msa0057680:five_prime_UTR | 40.0% | |
| TGCGAGAGAAATGGTACAAA+AGG | + | chr1_2:13870260-13870279 | Msa0057680:five_prime_UTR | 40.0% | |
| GCGAGAGAAATGGTACAAAA+GGG | + | chr1_2:13870261-13870280 | Msa0057680:five_prime_UTR | 40.0% | |
| !!! | TCGCTGTCATTTTCTACAGT+AGG | + | chr1_2:13870479-13870498 | Msa0057680:CDS | 40.0% |
| TAAGGACCCTAAGATGCATT+TGG | + | chr1_2:13871297-13871316 | Msa0057680:intron | 40.0% | |
| ACAAGGCCAAATGCATCTTA+GGG | - | chr1_2:13871306-13871325 | None:intergenic | 40.0% | |
| AACAAGGCCAAATGCATCTT+AGG | - | chr1_2:13871307-13871326 | None:intergenic | 40.0% | |
| GTTGTTGCAGTTTCCTTTGA+AGG | + | chr1_2:13871459-13871478 | Msa0057680:intron | 40.0% | |
| TGGTGCAATCTTTCCTTCAA+AGG | - | chr1_2:13871475-13871494 | None:intergenic | 40.0% | |
| TTAGGGTTGAATCCACTTTG+TGG | - | chr1_2:13871826-13871845 | None:intergenic | 40.0% | |
| GAAAAATGCTTGAAAGTGGG+GGG | + | chr1_2:13871986-13872005 | Msa0057680:intron | 40.0% | |
| !! | AAACTTGTTATCCGTGTTGG+CGG | - | chr1_2:13872162-13872181 | None:intergenic | 40.0% |
| CGGATAACAAGTTTACTCAC+CGG | + | chr1_2:13872168-13872187 | Msa0057680:intron | 40.0% | |
| !!! | CTCGTTGTTTTTGTTGCAGT+GGG | - | chr1_2:13872197-13872216 | None:intergenic | 40.0% |
| ! | TTGGTGGTTCTGTTTCTCAA+CGG | - | chr1_2:13872299-13872318 | None:intergenic | 40.0% |
| ! | AGTCATGGATTGTGTTTGGT+TGG | - | chr1_2:13872318-13872337 | None:intergenic | 40.0% |
| ! | GTGTAGTCATGGATTGTGTT+TGG | - | chr1_2:13872322-13872341 | None:intergenic | 40.0% |
| ! | TACATCTCGACGGAAAGTAT+GGG | + | chr1_2:13872603-13872622 | Msa0057680:intron | 40.0% |
| ! | ACGGAAAGTATGGGTAATGA+AGG | + | chr1_2:13872612-13872631 | Msa0057680:intron | 40.0% |
| TATGGGTAATGAAGGAGAAG+TGG | + | chr1_2:13872620-13872639 | Msa0057680:intron | 40.0% | |
| ATTGGGAGAGGAAGAGAAAA+CGG | + | chr1_2:13872679-13872698 | Msa0057680:intron | 40.0% | |
| AAATGCCGAGTTATAGTGCT+TGG | + | chr1_2:13872858-13872877 | Msa0057680:intron | 40.0% | |
| AGACTTCTACTAAGAGATGG+AGG | - | chr1_2:13872896-13872915 | None:intergenic | 40.0% | |
| TTGAAAAAGTTCCTCCGTTG+TGG | + | chr1_2:13873132-13873151 | Msa0057680:intron | 40.0% | |
| !! | ACAAAAGCACTCTACCACAA+CGG | - | chr1_2:13873149-13873168 | None:intergenic | 40.0% |
| ! | TTTCTTTTCCTGCATGAGCA+CGG | - | chr1_2:13873233-13873252 | None:intergenic | 40.0% |
| TTTCCATTGCTGAGGTGAAA+GGG | - | chr1_2:13873261-13873280 | None:intergenic | 40.0% | |
| ! | TTTTCCATTGCTGAGGTGAA+AGG | - | chr1_2:13873262-13873281 | None:intergenic | 40.0% |
| ! | AACAAGCTTTTCCATTGCTG+AGG | - | chr1_2:13873269-13873288 | None:intergenic | 40.0% |
| ! | AGGGTGTTCATCCTAGAATA+AGG | + | chr1_2:13873438-13873457 | Msa0057680:intron | 40.0% |
| GGGTGTTCATCCTAGAATAA+GGG | + | chr1_2:13873439-13873458 | Msa0057680:intron | 40.0% | |
| CAAACTTCAGCCCTTATTCT+AGG | - | chr1_2:13873452-13873471 | None:intergenic | 40.0% | |
| CTAGAATAAGGGCTGAAGTT+TGG | + | chr1_2:13873450-13873469 | Msa0057680:CDS | 40.0% | |
| ACTTACACTCCAAGTAGGAA+AGG | - | chr1_2:13873476-13873495 | None:intergenic | 40.0% | |
| CATTTATGTTGAGAGGGAAG+GGG | + | chr1_2:13873853-13873872 | Msa0057680:intron | 40.0% | |
| TGAGTTTCCTGCATTGTCTA+CGG | - | chr1_2:13873941-13873960 | None:intergenic | 40.0% | |
| ATTGGCGAAATCAGCTATGA+AGG | + | chr1_2:13873996-13874015 | Msa0057680:CDS | 40.0% | |
| TCCAGAAGCTGAATATTCGT+TGG | + | chr1_2:13874121-13874140 | Msa0057680:CDS | 40.0% | |
| TCCAACGAATATTCAGCTTC+TGG | - | chr1_2:13874125-13874144 | None:intergenic | 40.0% | |
| GAAGCTGAATATTCGTTGGA+AGG | + | chr1_2:13874125-13874144 | Msa0057680:CDS | 40.0% | |
| ! | AGTTCATCCTGATGATGTTC+AGG | + | chr1_2:13874229-13874248 | Msa0057680:CDS | 40.0% |
| AATTACTTCAGGACCTTCAG+TGG | - | chr1_2:13874288-13874307 | None:intergenic | 40.0% | |
| GGAGCTGTTTGAATTACTTC+AGG | - | chr1_2:13874299-13874318 | None:intergenic | 40.0% | |
| AATTACTTCAGGACCTTCAG+TGG | - | chr1_2:13874288-13874307 | None:intergenic | 40.0% | |
| GGAGCTGTTTGAATTACTTC+AGG | - | chr1_2:13874299-13874318 | None:intergenic | 40.0% | |
| !! | ACTTCCTTGGTAGTTTTCAC+GGG | - | chr1_2:13874434-13874453 | None:intergenic | 40.0% |
| !! | GACTTCCTTGGTAGTTTTCA+CGG | - | chr1_2:13874435-13874454 | None:intergenic | 40.0% |
| !! | GGTGGAACTTTTTCCTGTAA+GGG | - | chr1_2:13874464-13874483 | None:intergenic | 40.0% |
| GTGGAGAAGTCTTCATTAGT+TGG | - | chr1_2:13874494-13874513 | None:intergenic | 40.0% | |
| ! | GATAAATTCTGCTAGCCTCT+AGG | - | chr1_2:13874652-13874671 | None:intergenic | 40.0% |
| TATAAGGAGGCAACTAGAGT+TGG | + | chr1_2:13874859-13874878 | Msa0057680:intron | 40.0% | |
| AGGAGGATGTGTTCATCTCA+TGG | - | chr1_2:13870312-13870331 | None:intergenic | 45.0% | |
| AGAGAGAATGGCAGTTGTGT+CGG | - | chr1_2:13870347-13870366 | None:intergenic | 45.0% | |
| TGAGAGAGAATCTACCCTTG+CGG | - | chr1_2:13870393-13870412 | None:intergenic | 45.0% | |
| CAAGGGTAGATTCTCTCTCA+TGG | + | chr1_2:13870393-13870412 | Msa0057680:CDS | 45.0% | |
| ! | AGTAGAGTTAGGTGGTGTTG+CGG | - | chr1_2:13870419-13870438 | None:intergenic | 45.0% |
| CGAAAAGGGCTCTCGTAATT+TGG | + | chr1_2:13870722-13870741 | Msa0057680:intron | 45.0% | |
| ! | GGGCTCTCGTAATTTGGAAT+CGG | + | chr1_2:13870728-13870747 | Msa0057680:intron | 45.0% |
| ! | CTCGTAATTTGGAATCGGTC+AGG | + | chr1_2:13870733-13870752 | Msa0057680:intron | 45.0% |
| ! | GTAATTTGGAATCGGTCAGG+AGG | + | chr1_2:13870736-13870755 | Msa0057680:intron | 45.0% |
| TGGTTCATGAGCTTCGGTTA+AGG | - | chr1_2:13870824-13870843 | None:intergenic | 45.0% | |
| TTCAGGTGGTTCATGAGCTT+CGG | - | chr1_2:13870830-13870849 | None:intergenic | 45.0% | |
| ! | GAGTAGGGTACCAACTAAGT+TGG | - | chr1_2:13871676-13871695 | None:intergenic | 45.0% |
| AGCACGGAACATAGACTTTG+AGG | + | chr1_2:13872119-13872138 | Msa0057680:intron | 45.0% | |
| GCACGGAACATAGACTTTGA+GGG | + | chr1_2:13872120-13872139 | Msa0057680:intron | 45.0% | |
| !!! | TTTTTGTTGCAGTGGGTTGC+CGG | - | chr1_2:13872190-13872209 | None:intergenic | 45.0% |
| !!! | GCTCGTTGTTTTTGTTGCAG+TGG | - | chr1_2:13872198-13872217 | None:intergenic | 45.0% |
| ! | CATGGATTGTGTTTGGTTGG+TGG | - | chr1_2:13872315-13872334 | None:intergenic | 45.0% |
| ATCCATGACTACACCTTCGA+AGG | + | chr1_2:13872328-13872347 | Msa0057680:intron | 45.0% | |
| TCCATGACTACACCTTCGAA+GGG | + | chr1_2:13872329-13872348 | Msa0057680:intron | 45.0% | |
| TCTGATGTATCCTACCCGAA+AGG | + | chr1_2:13872386-13872405 | Msa0057680:intron | 45.0% | |
| CTGATGTATCCTACCCGAAA+GGG | + | chr1_2:13872387-13872406 | Msa0057680:intron | 45.0% | |
| GAGATGTAGCCTAACTCTCA+CGG | - | chr1_2:13872591-13872610 | None:intergenic | 45.0% | |
| AGAGTTAGGCTACATCTCGA+CGG | + | chr1_2:13872593-13872612 | Msa0057680:intron | 45.0% | |
| CTACATCTCGACGGAAAGTA+TGG | + | chr1_2:13872602-13872621 | Msa0057680:intron | 45.0% | |
| GAAGGAGAAGTGGAAAGAAG+CGG | + | chr1_2:13872630-13872649 | Msa0057680:intron | 45.0% | |
| ! | TTCTTTTCCTGCATGAGCAC+GGG | - | chr1_2:13873232-13873251 | None:intergenic | 45.0% |
| TTCCATTGCTGAGGTGAAAG+GGG | - | chr1_2:13873260-13873279 | None:intergenic | 45.0% | |
| GGAACTTAGTTCCACCATCA+CGG | - | chr1_2:13873310-13873329 | None:intergenic | 45.0% | |
| ! | TTCCTGAAAAGAGTGCGCAA+TGG | + | chr1_2:13873326-13873345 | Msa0057680:CDS | 45.0% |
| ! | GAAGTTTGGCCTTTCCTACT+TGG | + | chr1_2:13873464-13873483 | Msa0057680:CDS | 45.0% |
| GGCATACTTACACTCCAAGT+AGG | - | chr1_2:13873481-13873500 | None:intergenic | 45.0% | |
| AAGAACTCCGTAGACAATGC+AGG | + | chr1_2:13873931-13873950 | Msa0057680:CDS | 45.0% | |
| ATCAGCTATGAAGGAGGTGA+TGG | + | chr1_2:13874005-13874024 | Msa0057680:CDS | 45.0% | |
| CAATGCTGATGCATCTATGC+TGG | + | chr1_2:13874169-13874188 | Msa0057680:CDS | 45.0% | |
| !! | GAATCCTCGGTCGTTTTCAT+GGG | - | chr1_2:13874266-13874285 | None:intergenic | 45.0% |
| TCTTCCTGAACATCATCACG+AGG | - | chr1_2:13874320-13874339 | None:intergenic | 45.0% | |
| AATCCCTGGCAATTCTCATG+GGG | - | chr1_2:13874349-13874368 | None:intergenic | 45.0% | |
| GAATCCCTGGCAATTCTCAT+GGG | - | chr1_2:13874350-13874369 | None:intergenic | 45.0% | |
| GTAATTCAAACAGCTCCTCC+TGG | + | chr1_2:13874386-13874405 | Msa0057680:CDS | 45.0% | |
| TTATCCTCCTGAACATCACC+AGG | - | chr1_2:13874407-13874426 | None:intergenic | 45.0% | |
| CAATCCCGTGAAAACTACCA+AGG | + | chr1_2:13874427-13874446 | Msa0057680:CDS | 45.0% | |
| TAAGGGAGATGAGACTTCCT+TGG | - | chr1_2:13874447-13874466 | None:intergenic | 45.0% | |
| !! | CGGTGGAACTTTTTCCTGTA+AGG | - | chr1_2:13874465-13874484 | None:intergenic | 45.0% |
| !! | TCATTAGTTGGTAGCTTCGG+TGG | - | chr1_2:13874482-13874501 | None:intergenic | 45.0% |
| CTAATGAAGACTTCTCCACC+TGG | + | chr1_2:13874495-13874514 | Msa0057680:CDS | 45.0% | |
| CAATACGTGCCAATGCAGAA+TGG | + | chr1_2:13874540-13874559 | Msa0057680:intron | 45.0% | |
| TCTGATACGGAAGCTTGAGA+GGG | - | chr1_2:13874578-13874597 | None:intergenic | 45.0% | |
| ACGTGCTACACTGTCTGATA+CGG | - | chr1_2:13874591-13874610 | None:intergenic | 45.0% | |
| ! | TCTGAAATTGGCTACTGCCA+GGG | + | chr1_2:13874719-13874738 | Msa0057680:CDS | 45.0% |
| !! | GAGGCTTTCTGGTGTTTTGT+TGG | + | chr1_2:13874791-13874810 | Msa0057680:CDS | 45.0% |
| TTGATGAGGTGGGTATAAGG+AGG | + | chr1_2:13874846-13874865 | Msa0057680:intron | 45.0% | |
| !! | AAATATTTCTTTATAAAATT+AGG | + | chr1_2:13871111-13871130 | Msa0057680:intron | 5.0% |
| ! | AGTTGTGTCGGTGGTGAAGT+GGG | - | chr1_2:13870335-13870354 | None:intergenic | 50.0% |
| ACCACCTAACTCTACTCCAG+CGG | + | chr1_2:13870423-13870442 | Msa0057680:CDS | 50.0% | |
| TCGTTGTTGCAGGGAGTTGA+TGG | - | chr1_2:13871923-13871942 | None:intergenic | 50.0% | |
| TGCTCTCTGTCGTTGTTGCA+GGG | - | chr1_2:13871932-13871951 | None:intergenic | 50.0% | |
| ATGCTCTCTGTCGTTGTTGC+AGG | - | chr1_2:13871933-13871952 | None:intergenic | 50.0% | |
| ! | TGCAATTTAGTTGGTGCGCG+TGG | - | chr1_2:13872045-13872064 | None:intergenic | 50.0% |
| ! | CGGAACATAGACTTTGAGGG+TGG | + | chr1_2:13872123-13872142 | Msa0057680:intron | 50.0% |
| ! | CATAGACTTTGAGGGTGGTG+AGG | + | chr1_2:13872128-13872147 | Msa0057680:intron | 50.0% |
| TTTGAGGGTGGTGAGGTAAC+CGG | + | chr1_2:13872135-13872154 | Msa0057680:intron | 50.0% | |
| ! | ACCCTTCGAAGGTGTAGTCA+TGG | - | chr1_2:13872333-13872352 | None:intergenic | 50.0% |
| TGTTCTCTCAGACCCTTCGA+AGG | - | chr1_2:13872344-13872363 | None:intergenic | 50.0% | |
| AAGGGTCTGAGAGAACAACG+TGG | + | chr1_2:13872347-13872366 | Msa0057680:intron | 50.0% | |
| CTCGTCGTTCTGCTGTTCTA+TGG | - | chr1_2:13872472-13872491 | None:intergenic | 50.0% | |
| CAGAACGACGAGATCTGCTT+CGG | + | chr1_2:13872480-13872499 | Msa0057680:intron | 50.0% | |
| ATGTAGCCTAACTCTCACGG+TGG | - | chr1_2:13872588-13872607 | None:intergenic | 50.0% | |
| ! | AAAGAAGCGGTGGTGGTTTG+TGG | + | chr1_2:13872643-13872662 | Msa0057680:intron | 50.0% |
| ! | AAAGCACTCTACCACAACGG+AGG | - | chr1_2:13873146-13873165 | None:intergenic | 50.0% |
| CTTAAATCCCGTGCTCATGC+AGG | + | chr1_2:13873222-13873241 | Msa0057680:intron | 50.0% | |
| TCCATTGCTGAGGTGAAAGG+GGG | - | chr1_2:13873259-13873278 | None:intergenic | 50.0% | |
| GAAGATGGTAGACTCCGTGA+TGG | + | chr1_2:13873293-13873312 | Msa0057680:CDS | 50.0% | |
| ! | CTCCATTGCGCACTCTTTTC+AGG | - | chr1_2:13873331-13873350 | None:intergenic | 50.0% |
| !! | AGGGAAGGGGTGTTAACATC+AGG | + | chr1_2:13873866-13873885 | Msa0057680:intron | 50.0% |
| GGCGAAATCAGCTATGAAGG+AGG | + | chr1_2:13873999-13874018 | Msa0057680:CDS | 50.0% | |
| !! | GAGTTTTGTCCTGGCTAGAC+GGG | - | chr1_2:13874103-13874122 | None:intergenic | 50.0% |
| !! | GGAGTTTTGTCCTGGCTAGA+CGG | - | chr1_2:13874104-13874123 | None:intergenic | 50.0% |
| !!! | CAGCTTCTGGAGTTTTGTCC+TGG | - | chr1_2:13874112-13874131 | None:intergenic | 50.0% |
| CAATCCCATGAAAACGACCG+AGG | + | chr1_2:13874259-13874278 | Msa0057680:CDS | 50.0% | |
| !! | GGAATCCTCGGTCGTTTTCA+TGG | - | chr1_2:13874267-13874286 | None:intergenic | 50.0% |
| AGGACCTTCAGTGGAATCCT+CGG | - | chr1_2:13874279-13874298 | None:intergenic | 50.0% | |
| ! | AGCTCCTCGTGATGATGTTC+AGG | + | chr1_2:13874313-13874332 | Msa0057680:intron | 50.0% |
| ACAACCCCATGAGAATTGCC+AGG | + | chr1_2:13874342-13874361 | Msa0057680:CDS | 50.0% | |
| CAACCCCATGAGAATTGCCA+GGG | + | chr1_2:13874343-13874362 | Msa0057680:CDS | 50.0% | |
| GGAATCCCTGGCAATTCTCA+TGG | - | chr1_2:13874351-13874370 | None:intergenic | 50.0% | |
| ATTGCCAGGGATTCCACTGA+AGG | + | chr1_2:13874356-13874375 | Msa0057680:CDS | 50.0% | |
| GGAAGTCTCATCTCCCTTAC+AGG | + | chr1_2:13874448-13874467 | Msa0057680:CDS | 50.0% | |
| AAGACTTCTCCACCTGGCAA+CGG | + | chr1_2:13874501-13874520 | Msa0057680:CDS | 50.0% | |
| TCTGATAATCCGTTGCCAGG+TGG | - | chr1_2:13874513-13874532 | None:intergenic | 50.0% | |
| GAGTCTGATAATCCGTTGCC+AGG | - | chr1_2:13874516-13874535 | None:intergenic | 50.0% | |
| ACGTGCCAATGCAGAATGGA+TGG | + | chr1_2:13874544-13874563 | Msa0057680:intron | 50.0% | |
| GTGTGCCATCCATTCTGCAT+TGG | - | chr1_2:13874552-13874571 | None:intergenic | 50.0% | |
| CTGATACGGAAGCTTGAGAG+GGG | - | chr1_2:13874577-13874596 | None:intergenic | 50.0% | |
| GTCTGATACGGAAGCTTGAG+AGG | - | chr1_2:13874579-13874598 | None:intergenic | 50.0% | |
| GGAGGATTACGATCACCTAG+AGG | + | chr1_2:13874634-13874653 | Msa0057680:CDS | 50.0% | |
| !! | CTCTGAAATTGGCTACTGCC+AGG | + | chr1_2:13874718-13874737 | Msa0057680:CDS | 50.0% |
| ATAGCAGGTCACTCATACCC+TGG | - | chr1_2:13874739-13874758 | None:intergenic | 50.0% | |
| GGCTTGATGAGGTGGGTATA+AGG | + | chr1_2:13874843-13874862 | Msa0057680:intron | 50.0% | |
| ! | CAGTTGTGTCGGTGGTGAAG+TGG | - | chr1_2:13870336-13870355 | None:intergenic | 55.0% |
| GAGAATGGCAGTTGTGTCGG+TGG | - | chr1_2:13870344-13870363 | None:intergenic | 55.0% | |
| AGAGAATCTACCCTTGCGGC+CGG | - | chr1_2:13870389-13870408 | None:intergenic | 55.0% | |
| ACCGCTGGAGTAGAGTTAGG+TGG | - | chr1_2:13870427-13870446 | None:intergenic | 55.0% | |
| ACGACCGCTGGAGTAGAGTT+AGG | - | chr1_2:13870430-13870449 | None:intergenic | 55.0% | |
| ! | TTAGGGTTGTCGACTGGGTC+AGG | - | chr1_2:13871776-13871795 | None:intergenic | 55.0% |
| GACCCAGTCGACAACCCTAA+CGG | + | chr1_2:13871776-13871795 | Msa0057680:intron | 55.0% | |
| ACCCAGTCGACAACCCTAAC+GGG | + | chr1_2:13871777-13871796 | Msa0057680:intron | 55.0% | |
| ! | TGTTATCCGTGTTGGCGGTC+CGG | - | chr1_2:13872157-13872176 | None:intergenic | 55.0% |
| GGTCTGAGAGAACAACGTGG+AGG | + | chr1_2:13872350-13872369 | Msa0057680:intron | 55.0% | |
| ! | TCTCTCAGACCCTTTCGGGT+AGG | - | chr1_2:13872399-13872418 | None:intergenic | 55.0% |
| CCGTTCTCTCAGACCCTTTC+GGG | - | chr1_2:13872403-13872422 | None:intergenic | 55.0% | |
| CCCGAAAGGGTCTGAGAGAA+CGG | + | chr1_2:13872400-13872419 | Msa0057680:intron | 55.0% | |
| GCCGTTCTCTCAGACCCTTT+CGG | - | chr1_2:13872404-13872423 | None:intergenic | 55.0% | |
| AACACCGTTGCAGCCATCGA+CGG | + | chr1_2:13872437-13872456 | Msa0057680:intron | 55.0% | |
| CAGCAAGCATGTCGTGACAG+AGG | + | chr1_2:13872505-13872524 | Msa0057680:intron | 55.0% | |
| CCATCGTCACAAGCAGTCGT+CGG | - | chr1_2:13872534-13872553 | None:intergenic | 55.0% | |
| ACGACTGCTTGTGACGATGG+TGG | + | chr1_2:13872534-13872553 | Msa0057680:intron | 55.0% | |
| AACTCTCACGGTGGTGCGAT+CGG | - | chr1_2:13872579-13872598 | None:intergenic | 55.0% | |
| ATCGCACCACCGTGAGAGTT+AGG | + | chr1_2:13872579-13872598 | Msa0057680:intron | 55.0% | |
| GGAGAAGTGGAAAGAAGCGG+TGG | + | chr1_2:13872633-13872652 | Msa0057680:intron | 55.0% | |
| GAAGTGGAAAGAAGCGGTGG+TGG | + | chr1_2:13872636-13872655 | Msa0057680:intron | 55.0% | |
| ! | AAGCGGTGGTGGTTTGTGGA+AGG | + | chr1_2:13872647-13872666 | Msa0057680:intron | 55.0% |
| ! | GGTGGTGGTTTGTGGAAGGT+CGG | + | chr1_2:13872651-13872670 | Msa0057680:intron | 55.0% |
| ACCCCCTTTCACCTCAGCAA+TGG | + | chr1_2:13873255-13873274 | Msa0057680:CDS | 55.0% | |
| GATGGTAGACTCCGTGATGG+TGG | + | chr1_2:13873296-13873315 | Msa0057680:CDS | 55.0% | |
| ! | TGATGATGCAGCCAGTGCCA+GGG | + | chr1_2:13874073-13874092 | Msa0057680:CDS | 55.0% |
| ACGACCGAGGATTCCACTGA+AGG | + | chr1_2:13874272-13874291 | Msa0057680:CDS | 55.0% | |
| AGGACCTTCAGTGGAATCCC+TGG | - | chr1_2:13874363-13874382 | None:intergenic | 55.0% | |
| ! | AGCTCCTCCTGGTGATGTTC+AGG | + | chr1_2:13874397-13874416 | Msa0057680:CDS | 55.0% |
| ! | TCCTCCTGGTGATGTTCAGG+AGG | + | chr1_2:13874400-13874419 | Msa0057680:CDS | 55.0% |
| TCCTCCTGAACATCACCAGG+AGG | - | chr1_2:13874404-13874423 | None:intergenic | 55.0% | |
| TGTAGCACGTCAGACTGCTG+AGG | + | chr1_2:13874601-13874620 | Msa0057680:intron | 55.0% | |
| CTGAGGATCACGAGGCTTTC+TGG | + | chr1_2:13874780-13874799 | Msa0057680:CDS | 55.0% | |
| ! | TGTGTCGGTGGTGAAGTGGG+AGG | - | chr1_2:13870332-13870351 | None:intergenic | 60.0% |
| GCCATTCTCTCTGTTGCCGC+CGG | + | chr1_2:13870355-13870374 | Msa0057680:CDS | 60.0% | |
| ACCGGCGGCAACAGAGAGAA+TGG | - | chr1_2:13870359-13870378 | None:intergenic | 60.0% | |
| !! | TCTACCCTTGCGGCCGGTTT+TGG | - | chr1_2:13870383-13870402 | None:intergenic | 60.0% |
| GACAGCGACGATAGCGACAC+CGG | - | chr1_2:13870467-13870486 | None:intergenic | 60.0% | |
| ! | GCCCGTTAGGGTTGTCGACT+GGG | - | chr1_2:13871781-13871800 | None:intergenic | 60.0% |
| TGCCCGTTAGGGTTGTCGAC+TGG | - | chr1_2:13871782-13871801 | None:intergenic | 60.0% | |
| GGTGAGTTCGACCGCCAACA+CGG | + | chr1_2:13872007-13872026 | Msa0057680:intron | 60.0% | |
| AGGTAACCGGACCGCCAACA+CGG | + | chr1_2:13872148-13872167 | Msa0057680:intron | 60.0% | |
| ATGGTTGCTGTCGCCGTCGA+TGG | - | chr1_2:13872453-13872472 | None:intergenic | 60.0% | |
| CCGACGACTGCTTGTGACGA+TGG | + | chr1_2:13872531-13872550 | Msa0057680:intron | 60.0% | |
| ! | TTGTGACGATGGTGGCGTCG+CGG | + | chr1_2:13872542-13872561 | Msa0057680:intron | 60.0% |
| ! | TGGTTTGTGGAAGGTCGGCG+AGG | + | chr1_2:13872656-13872675 | Msa0057680:intron | 60.0% |
| TGTGGAAGGTCGGCGAGGAT+TGG | + | chr1_2:13872661-13872680 | Msa0057680:intron | 60.0% | |
| GTGGAAGGTCGGCGAGGATT+GGG | + | chr1_2:13872662-13872681 | Msa0057680:intron | 60.0% | |
| ! | CTGATGATGCAGCCAGTGCC+AGG | + | chr1_2:13874072-13874091 | Msa0057680:CDS | 60.0% |
| AGACGGGAATTCCCTGGCAC+TGG | - | chr1_2:13874087-13874106 | None:intergenic | 60.0% | |
| CTGGCTAGACGGGAATTCCC+TGG | - | chr1_2:13874093-13874112 | None:intergenic | 60.0% | |
| CAGGGAATTCCCGTCTAGCC+AGG | + | chr1_2:13874091-13874110 | Msa0057680:CDS | 60.0% | |
| CGTCAGACTGCTGAGGCTGT+TGG | + | chr1_2:13874608-13874627 | Msa0057680:CDS | 60.0% | |
| ! | GACTGCTGAGGCTGTTGGCT+TGG | + | chr1_2:13874613-13874632 | Msa0057680:CDS | 60.0% |
| !! | TGCTGAGGCTGTTGGCTTGG+AGG | + | chr1_2:13874616-13874635 | Msa0057680:CDS | 60.0% |
| GTCGGTGGTGAAGTGGGAGG+AGG | - | chr1_2:13870329-13870348 | None:intergenic | 65.0% | |
| ! | GTTGCCGCCGGTGCCAAAAC+CGG | + | chr1_2:13870367-13870386 | Msa0057680:CDS | 65.0% |
| !! | CTTGCGGCCGGTTTTGGCAC+CGG | - | chr1_2:13870377-13870396 | None:intergenic | 65.0% |
| GGTGCCAAAACCGGCCGCAA+GGG | + | chr1_2:13870376-13870395 | Msa0057680:CDS | 65.0% | |
| GACGATAGCGACACCGGCGA+GGG | - | chr1_2:13870461-13870480 | None:intergenic | 65.0% | |
| GTCGCCGTCGATGGCTGCAA+CGG | - | chr1_2:13872444-13872463 | None:intergenic | 65.0% | |
| ! | TGGTGGCGTCGCGGCAAAAG+TGG | + | chr1_2:13872551-13872570 | Msa0057680:intron | 65.0% |
| AGGTCGGCGAGGATTGGGAG+AGG | + | chr1_2:13872667-13872686 | Msa0057680:intron | 65.0% | |
| ! | CGGTGCCAAAACCGGCCGCA+AGG | + | chr1_2:13870375-13870394 | Msa0057680:CDS | 70.0% |
| AGGGCGGTGAAGACGACCGC+TGG | - | chr1_2:13870442-13870461 | None:intergenic | 70.0% | |
| GTCGTCTTCACCGCCCTCGC+CGG | + | chr1_2:13870445-13870464 | Msa0057680:CDS | 70.0% | |
| GATAGCGACACCGGCGAGGG+CGG | - | chr1_2:13870458-13870477 | None:intergenic | 70.0% | |
| CGACGATAGCGACACCGGCG+AGG | - | chr1_2:13870462-13870481 | None:intergenic | 70.0% | |
| !! | GCGGCCGGTTTTGGCACCGG+CGG | - | chr1_2:13870374-13870393 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 13870118 | 13874903 | 13870118 | ID=Msa0057680;Name=Msa0057680 |
| chr1_2 | mRNA | 13870118 | 13874903 | 13870118 | ID=Msa0057680-mRNA-1;Parent=Msa0057680;Name=Msa0057680-mRNA-1;_AED=0.11;_eAED=0.11;_QI=198|0.5|0.44|1|0.37|0.33|9|0|421 |
| chr1_2 | exon | 13870118 | 13870500 | 13870118 | ID=Msa0057680-mRNA-1:exon:5447;Parent=Msa0057680-mRNA-1 |
| chr1_2 | exon | 13873244 | 13873349 | 13873244 | ID=Msa0057680-mRNA-1:exon:5448;Parent=Msa0057680-mRNA-1 |
| chr1_2 | exon | 13873440 | 13873489 | 13873440 | ID=Msa0057680-mRNA-1:exon:5449;Parent=Msa0057680-mRNA-1 |
| chr1_2 | exon | 13873710 | 13873763 | 13873710 | ID=Msa0057680-mRNA-1:exon:5450;Parent=Msa0057680-mRNA-1 |
| chr1_2 | exon | 13873920 | 13874060 | 13873920 | ID=Msa0057680-mRNA-1:exon:5451;Parent=Msa0057680-mRNA-1 |
| chr1_2 | exon | 13874070 | 13874301 | 13874070 | ID=Msa0057680-mRNA-1:exon:5452;Parent=Msa0057680-mRNA-1 |
| chr1_2 | exon | 13874335 | 13874545 | 13874335 | ID=Msa0057680-mRNA-1:exon:5453;Parent=Msa0057680-mRNA-1 |
| chr1_2 | exon | 13874606 | 13874853 | 13874606 | ID=Msa0057680-mRNA-1:exon:5454;Parent=Msa0057680-mRNA-1 |
| chr1_2 | exon | 13874865 | 13874903 | 13874865 | ID=Msa0057680-mRNA-1:exon:5455;Parent=Msa0057680-mRNA-1 |
| chr1_2 | five_prime_UTR | 13870118 | 13870315 | 13870118 | ID=Msa0057680-mRNA-1:five_prime_utr;Parent=Msa0057680-mRNA-1 |
| chr1_2 | CDS | 13870316 | 13870500 | 13870316 | ID=Msa0057680-mRNA-1:cds;Parent=Msa0057680-mRNA-1 |
| chr1_2 | CDS | 13873244 | 13873349 | 13873244 | ID=Msa0057680-mRNA-1:cds;Parent=Msa0057680-mRNA-1 |
| chr1_2 | CDS | 13873440 | 13873489 | 13873440 | ID=Msa0057680-mRNA-1:cds;Parent=Msa0057680-mRNA-1 |
| chr1_2 | CDS | 13873710 | 13873763 | 13873710 | ID=Msa0057680-mRNA-1:cds;Parent=Msa0057680-mRNA-1 |
| chr1_2 | CDS | 13873920 | 13874060 | 13873920 | ID=Msa0057680-mRNA-1:cds;Parent=Msa0057680-mRNA-1 |
| chr1_2 | CDS | 13874070 | 13874301 | 13874070 | ID=Msa0057680-mRNA-1:cds;Parent=Msa0057680-mRNA-1 |
| chr1_2 | CDS | 13874335 | 13874545 | 13874335 | ID=Msa0057680-mRNA-1:cds;Parent=Msa0057680-mRNA-1 |
| chr1_2 | CDS | 13874606 | 13874853 | 13874606 | ID=Msa0057680-mRNA-1:cds;Parent=Msa0057680-mRNA-1 |
| chr1_2 | CDS | 13874865 | 13874903 | 13874865 | ID=Msa0057680-mRNA-1:cds;Parent=Msa0057680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
