AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1343290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1343290 MtrunA17_Chr2g0278661 100.000 88 0 0 1 88 1 88 2.36e-56 178
Msa1343290 MtrunA17_Chr4g0050781 80.645 93 16 1 1 91 1 93 8.29e-48 155
Msa1343290 MtrunA17_Chr4g0035001 58.333 84 34 1 1 84 1 83 2.47e-30 108
Msa1343290 MtrunA17_Chr4g0035051 56.962 79 34 0 6 84 7 85 1.04e-28 103
Msa1343290 MtrunA17_Chr4g0035031 56.250 80 35 0 6 85 7 86 9.52e-28 103
Msa1343290 MtrunA17_Chr1g0210241 46.392 97 51 1 1 96 1 97 3.75e-25 98.6
Msa1343290 MtrunA17_Chr7g0266751 46.429 84 45 0 7 90 32 115 9.42e-23 89.0
Msa1343290 MtrunA17_Chr3g0086861 42.857 84 48 0 1 84 38 121 7.34e-20 86.3
Msa1343290 MtrunA17_Chr4g0061451 41.667 84 49 0 1 84 36 119 2.64e-19 82.8
Msa1343290 MtrunA17_Chr7g0219021 46.053 76 41 0 8 83 41 116 9.52e-19 81.3
Msa1343290 MtrunA17_Chr3g0116631 47.436 78 41 0 7 84 206 283 1.54e-18 81.3
Msa1343290 MtrunA17_Chr3g0116631 36.905 84 53 0 8 91 110 193 1.48e-12 64.7
Msa1343290 MtrunA17_Chr7g0263001 47.561 82 43 0 8 89 36 117 1.69e-18 77.8
Msa1343290 MtrunA17_Chr3g0121631 50.000 76 37 1 8 83 37 111 4.96e-18 76.6
Msa1343290 MtrunA17_Chr3g0119311 45.122 82 43 1 8 87 37 118 1.06e-17 75.5
Msa1343290 MtrunA17_Chr1g0198431 41.463 82 48 0 8 89 193 274 3.40e-17 77.4
Msa1343290 MtrunA17_Chr1g0168601 40.506 79 47 0 6 84 152 230 4.50e-17 76.3
Msa1343290 MtrunA17_Chr7g0276531 48.611 72 33 1 3 70 14 85 1.35e-16 75.5
Msa1343290 MtrunA17_Chr3g0088511 37.255 102 52 2 8 97 33 134 2.22e-16 72.0
Msa1343290 MtrunA17_Chr8g0346011 44.000 75 41 1 2 76 32 105 3.61e-16 74.7
Msa1343290 MtrunA17_Chr6g0481071 39.773 88 48 1 8 90 96 183 4.54e-16 72.4
Msa1343290 MtrunA17_Chr2g0290191 39.796 98 54 2 8 105 5 97 6.88e-16 75.1
Msa1343290 MtrunA17_Chr2g0290191 31.731 104 66 2 8 111 107 205 1.31e-11 62.4
Msa1343290 MtrunA17_Chr1g0181111 46.053 76 41 0 8 83 197 272 6.93e-16 73.9
Msa1343290 MtrunA17_Chr1g0181111 37.634 93 58 0 8 100 85 177 1.19e-12 64.7
Msa1343290 MtrunA17_Chr3g0101061 39.583 96 50 2 3 95 36 126 6.96e-16 75.1
Msa1343290 MtrunA17_Chr4g0017401 39.216 102 57 3 3 101 12 111 7.66e-15 70.9
Msa1343290 MtrunA17_Chr5g0447761 36.364 110 64 3 3 111 2 106 1.25e-14 71.2
Msa1343290 MtrunA17_Chr7g0267571 40.789 76 45 0 8 83 213 288 1.55e-14 70.5
Msa1343290 MtrunA17_Chr3g0144311 44.595 74 40 1 3 76 25 97 2.18e-14 69.7
Msa1343290 MtrunA17_Chr4g0058151 41.026 78 46 0 7 84 216 293 2.56e-14 69.7
Msa1343290 MtrunA17_Chr4g0058151 37.209 86 54 0 3 88 118 203 3.16e-14 69.3
Msa1343290 MtrunA17_Chr1g0177101 39.474 76 46 0 8 83 208 283 8.40e-14 68.2
Msa1343290 MtrunA17_Chr2g0327921 35.802 81 52 0 8 88 8 88 9.13e-14 63.9
Msa1343290 MtrunA17_Chr5g0426311 41.892 74 42 1 3 76 12 84 9.25e-14 67.8
Msa1343290 MtrunA17_Chr1g0186351 38.272 81 48 1 3 83 2 80 1.26e-13 68.6
Msa1343290 MtrunA17_Chr1g0186351 35.443 79 50 1 8 86 113 190 2.65e-12 64.7
Msa1343290 MtrunA17_Chr6g0449481 33.000 100 66 1 8 107 134 232 1.30e-13 68.2
Msa1343290 MtrunA17_Chr4g0031091 37.662 77 48 0 8 84 34 110 1.40e-13 64.3
Msa1343290 MtrunA17_Chr4g0042161 42.105 76 44 0 10 85 54 129 1.67e-13 64.7
Msa1343290 MtrunA17_Chr7g0268551 41.667 72 42 0 10 81 351 422 2.00e-13 67.8
Msa1343290 MtrunA17_Chr3g0120721 34.545 110 69 1 2 108 98 207 2.26e-13 67.4
Msa1343290 MtrunA17_Chr3g0127751 41.892 74 42 1 3 76 22 94 9.47e-13 64.7
Msa1343290 MtrunA17_Chr7g0219031 42.623 61 35 0 8 68 41 101 1.30e-12 61.6
Msa1343290 MtrunA17_Chr8g0371201 39.474 76 46 0 9 84 64 139 7.98e-12 62.4
Msa1343290 MtrunA17_Chr4g0065741 33.735 83 55 0 8 90 72 154 8.22e-12 60.8
Msa1343290 MtrunA17_Chr5g0406171 32.749 171 97 4 9 172 133 292 2.59e-11 61.2
Msa1343290 MtrunA17_Chr3g0110211 44.737 76 41 1 9 83 114 189 3.15e-11 61.2
Msa1343290 MtrunA17_Chr4g0018581 40.741 81 48 0 3 83 447 527 4.87e-11 60.8
Msa1343290 MtrunA17_Chr3g0135111 32.692 104 68 1 3 106 6 107 8.21e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1343290 AT3G26420.1 74.286 105 23 1 1 101 1 105 1.12e-46 154
Msa1343290 AT2G21660.2 62.025 79 30 0 6 84 7 85 2.44e-30 109
Msa1343290 AT2G21660.1 62.025 79 30 0 6 84 7 85 3.87e-30 109
Msa1343290 AT4G39260.3 56.818 88 37 1 1 88 1 87 4.32e-30 106
Msa1343290 AT4G39260.2 57.143 84 35 1 1 84 1 83 4.78e-28 102
Msa1343290 AT4G39260.1 57.143 84 35 1 1 84 1 83 1.54e-27 102
Msa1343290 AT4G13850.3 51.190 84 39 1 8 89 36 119 5.76e-21 84.7
Msa1343290 AT4G13850.2 51.190 84 39 1 8 89 36 119 7.21e-21 84.7
Msa1343290 AT5G04280.1 42.718 103 58 1 1 102 1 103 7.24e-21 88.2
Msa1343290 AT4G13850.4 53.247 77 36 0 8 84 36 112 8.03e-21 84.0
Msa1343290 AT4G13850.1 51.190 84 39 1 8 89 36 119 8.15e-21 84.7
Msa1343290 AT1G60650.2 40.000 105 63 0 6 110 11 115 9.14e-21 87.4
Msa1343290 AT1G60650.1 40.000 105 63 0 6 110 11 115 9.14e-21 87.4
Msa1343290 AT4G39260.4 55.072 69 30 1 1 69 1 68 1.43e-20 82.4
Msa1343290 AT5G06210.1 46.914 81 43 0 8 88 35 115 4.33e-19 80.1
Msa1343290 AT4G24770.1 46.988 83 44 0 7 89 244 326 4.75e-19 83.6
Msa1343290 AT4G24770.1 39.773 88 53 0 4 91 147 234 1.44e-15 73.9
Msa1343290 AT4G24770.2 46.988 83 44 0 7 89 244 326 4.75e-19 83.6
Msa1343290 AT4G24770.2 39.773 88 53 0 4 91 147 234 1.44e-15 73.9
Msa1343290 AT3G23830.2 45.679 81 44 0 8 88 36 116 1.57e-18 78.2
Msa1343290 AT3G23830.1 45.679 81 44 0 8 88 36 116 1.57e-18 78.2
Msa1343290 AT3G53460.1 45.122 82 45 0 8 89 258 339 2.12e-18 81.6
Msa1343290 AT3G53460.1 32.967 91 61 0 2 92 94 184 9.20e-11 60.1
Msa1343290 AT3G53460.3 45.122 82 45 0 8 89 258 339 2.12e-18 81.6
Msa1343290 AT3G53460.3 32.967 91 61 0 2 92 94 184 9.20e-11 60.1
Msa1343290 AT3G53460.2 45.122 82 45 0 8 89 258 339 2.12e-18 81.6
Msa1343290 AT3G53460.2 32.967 91 61 0 2 92 94 184 9.20e-11 60.1
Msa1343290 AT2G37220.1 45.122 82 45 0 8 89 205 286 2.23e-18 81.3
Msa1343290 AT2G37220.1 36.667 90 57 0 2 91 86 175 3.05e-14 69.7
Msa1343290 AT3G53460.4 45.122 82 45 0 8 89 279 360 2.98e-18 81.6
Msa1343290 AT1G18630.1 51.316 76 37 0 8 83 37 112 3.43e-18 77.8
Msa1343290 AT5G59865.1 40.777 103 51 1 2 94 11 113 3.46e-18 76.6
Msa1343290 AT1G33470.3 53.125 64 30 0 1 64 1 64 3.43e-17 77.0
Msa1343290 AT1G33470.2 53.125 64 30 0 1 64 1 64 4.70e-17 76.6
Msa1343290 AT1G33470.1 53.125 64 30 0 1 64 1 64 4.72e-17 76.6
Msa1343290 AT4G26650.1 39.815 108 63 1 2 109 10 115 5.72e-17 78.6
Msa1343290 AT4G26650.2 39.815 108 63 1 2 109 7 112 5.91e-17 78.2
Msa1343290 AT3G13224.2 38.235 102 60 1 8 106 110 211 1.66e-16 76.6
Msa1343290 AT1G74230.1 47.368 76 39 1 8 83 35 109 1.95e-16 75.9
Msa1343290 AT2G46780.1 46.667 75 39 1 2 76 17 90 2.30e-16 76.3
Msa1343290 AT2G46780.2 46.667 75 39 1 2 76 17 90 2.30e-16 76.3
Msa1343290 AT3G13224.3 37.864 103 61 1 8 107 101 203 2.63e-16 75.9
Msa1343290 AT1G76460.1 48.649 74 37 1 3 76 20 92 3.67e-16 75.1
Msa1343290 AT3G07810.1 37.273 110 63 3 3 111 2 106 5.52e-16 75.5
Msa1343290 AT3G07810.2 37.273 110 63 3 3 111 2 106 5.69e-16 75.5
Msa1343290 AT1G22910.1 46.575 73 38 1 1 72 7 79 9.01e-16 73.6
Msa1343290 AT1G60000.1 44.304 79 44 0 6 84 176 254 1.23e-15 73.2
Msa1343290 AT1G22910.2 46.575 73 38 1 1 72 7 79 1.28e-15 72.8
Msa1343290 AT5G55550.5 39.604 101 56 2 3 103 2 97 1.32e-15 74.3
Msa1343290 AT5G55550.4 39.604 101 56 2 3 103 2 97 1.32e-15 74.3
Msa1343290 AT5G55550.9 39.604 101 56 2 3 103 2 97 1.32e-15 74.3
Msa1343290 AT5G55550.7 39.604 101 56 2 3 103 2 97 1.32e-15 74.3
Msa1343290 AT5G55550.1 39.604 101 56 2 3 103 2 97 1.32e-15 74.3
Msa1343290 AT3G20930.1 40.476 84 50 0 8 91 283 366 1.44e-15 73.9
Msa1343290 AT5G55550.2 39.604 101 56 2 3 103 2 97 1.45e-15 74.3
Msa1343290 AT5G55550.3 39.604 101 56 2 3 103 2 97 1.45e-15 74.3
Msa1343290 AT5G55550.6 39.604 101 56 2 3 103 2 97 1.45e-15 74.3
Msa1343290 AT5G55550.11 39.604 101 56 2 3 103 2 97 1.45e-15 74.3
Msa1343290 AT5G47320.1 44.156 77 43 0 8 84 32 108 2.05e-15 71.6
Msa1343290 AT2G27330.1 31.915 94 64 0 9 102 23 116 2.88e-15 68.9
Msa1343290 AT4G13860.1 42.466 73 42 0 8 80 4 76 3.31e-15 68.2
Msa1343290 AT5G50250.1 43.590 78 44 0 7 84 207 284 4.29e-15 72.0
Msa1343290 AT5G50250.1 35.632 87 56 0 5 91 111 197 3.12e-13 67.0
Msa1343290 AT2G37510.1 48.649 74 38 0 8 81 35 108 6.76e-15 68.9
Msa1343290 AT1G22910.3 46.575 73 38 1 1 72 7 79 8.66e-15 71.6
Msa1343290 AT1G20880.2 47.297 74 38 1 3 76 20 92 1.56e-14 70.5
Msa1343290 AT1G20880.3 47.297 74 38 1 3 76 20 92 1.56e-14 70.5
Msa1343290 AT1G20880.1 47.297 74 38 1 3 76 20 92 1.56e-14 70.5
Msa1343290 AT1G73530.1 35.165 91 56 1 8 98 78 165 1.62e-14 68.9
Msa1343290 AT5G47620.1 38.889 90 50 2 3 92 2 86 2.60e-14 70.9
Msa1343290 AT5G47620.2 38.889 90 50 2 3 92 2 86 2.60e-14 70.9
Msa1343290 AT5G47620.5 38.889 90 50 2 3 92 2 86 2.60e-14 70.9
Msa1343290 AT1G22330.1 37.037 81 50 1 3 83 13 92 6.60e-14 68.9
Msa1343290 AT3G08000.1 46.053 76 41 0 8 83 42 117 7.55e-14 66.2
Msa1343290 AT5G53720.1 38.298 94 56 2 6 99 8 99 1.36e-13 64.3
Msa1343290 AT1G78260.1 39.189 74 44 1 3 76 13 85 1.44e-13 67.8
Msa1343290 AT3G20930.2 38.202 89 50 1 8 91 283 371 1.88e-13 68.2
Msa1343290 AT4G14300.1 37.037 81 49 1 3 83 2 80 1.89e-13 68.2
Msa1343290 AT4G14300.1 32.911 79 52 1 8 86 111 188 8.69e-11 60.5
Msa1343290 AT4G14300.2 37.037 81 49 1 3 83 2 80 1.89e-13 68.2
Msa1343290 AT4G14300.2 32.911 79 52 1 8 86 111 188 8.69e-11 60.5
Msa1343290 AT3G52380.1 34.951 103 64 2 5 106 114 214 1.98e-13 67.8
Msa1343290 AT3G52380.1 36.842 76 48 0 8 83 220 295 4.97e-13 66.6
Msa1343290 AT3G54770.3 44.595 74 40 1 3 76 13 85 2.29e-13 67.0
Msa1343290 AT3G54770.1 44.595 74 40 1 3 76 13 85 2.66e-13 66.6
Msa1343290 AT5G55550.8 43.421 76 41 1 3 78 2 75 4.67e-13 67.0
Msa1343290 AT1G78260.2 39.189 74 44 1 3 76 13 85 4.73e-13 66.2
Msa1343290 AT5G55550.10 43.421 76 41 1 3 78 2 75 5.08e-13 67.0
Msa1343290 AT5G19030.1 40.000 80 48 0 10 89 80 159 1.23e-12 63.5
Msa1343290 AT5G47620.4 40.000 70 42 0 3 72 2 71 1.39e-12 65.9
Msa1343290 AT2G21690.1 39.706 68 41 0 1 68 1 68 2.05e-12 61.6
Msa1343290 AT1G17640.2 32.258 93 61 1 8 100 67 157 2.33e-12 65.1
Msa1343290 AT1G17640.1 32.258 93 61 1 8 100 67 157 2.33e-12 65.1
Msa1343290 AT1G17640.3 32.258 93 61 1 8 100 67 157 2.33e-12 65.1
Msa1343290 AT3G13224.1 40.000 75 45 0 8 82 110 184 3.20e-12 63.5
Msa1343290 AT1G03457.3 38.356 73 45 0 9 81 227 299 3.64e-12 64.3
Msa1343290 AT1G03457.2 38.889 72 44 0 10 81 342 413 5.30e-12 63.9
Msa1343290 AT1G03457.1 38.889 72 44 0 10 81 333 404 6.06e-12 63.9
Msa1343290 AT5G54580.1 35.000 100 62 1 9 108 58 154 6.18e-12 61.2
Msa1343290 AT5G40490.1 35.443 79 51 0 8 86 131 209 6.31e-12 63.9
Msa1343290 AT4G34110.1 39.080 87 52 1 10 96 218 303 8.21e-12 63.5
Msa1343290 AT5G61030.2 39.344 122 70 1 8 125 41 162 1.01e-11 62.8
Msa1343290 AT5G61030.1 39.344 122 70 1 8 125 41 162 1.01e-11 62.8
Msa1343290 AT3G52150.2 40.260 77 46 0 7 83 177 253 1.06e-11 62.4
Msa1343290 AT3G52150.1 40.260 77 46 0 7 83 177 253 1.06e-11 62.4
Msa1343290 AT3G06970.1 38.272 81 49 1 3 83 8 87 1.19e-11 62.8
Msa1343290 AT5G04280.3 49.231 65 32 1 39 102 1 65 2.10e-11 61.6
Msa1343290 AT5G04280.4 49.231 65 32 1 39 102 1 65 2.10e-11 61.6
Msa1343290 AT5G04280.5 49.231 65 32 1 39 102 1 65 2.10e-11 61.6
Msa1343290 AT5G04280.2 49.231 65 32 1 39 102 1 65 2.10e-11 61.6
Msa1343290 AT5G51300.1 39.474 76 46 0 5 80 478 553 2.75e-11 62.0
Msa1343290 AT5G51300.2 39.474 76 46 0 5 80 478 553 2.75e-11 62.0
Msa1343290 AT5G51300.3 39.474 76 46 0 5 80 478 553 2.75e-11 62.0
Msa1343290 AT5G40490.2 35.443 79 51 0 8 86 114 192 3.50e-11 61.6
Msa1343290 AT2G33410.1 34.286 70 46 0 3 72 2 71 5.51e-11 60.8
Msa1343290 AT2G22100.1 37.209 86 53 1 3 88 159 243 5.70e-11 60.8
Msa1343290 AT3G46020.1 33.766 77 51 0 8 84 8 84 7.07e-11 57.0
Msa1343290 AT4G13860.2 44.828 58 32 0 23 80 2 59 9.24e-11 55.8

Find 81 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGGGCGTTCTCGTGGTTT+TGG 0.181319 tig0006342:-15217 Msa1343290:CDS
GGTGGGCGCGACAGGGATTC+TGG 0.257534 tig0006342:-14848 Msa1343290:CDS
GCTCTTATGGTGGGCGCGAC+AGG 0.315939 tig0006342:-14856 Msa1343290:CDS
GGGACGGTGGTGGGCGTGAC+AGG 0.342058 tig0006342:-14730 Msa1343290:CDS
GTGGTGGTTGACAAATTCTC+TGG 0.342986 tig0006342:-15235 Msa1343290:CDS
GGGATGGCGGTGGTCGTGAT+AGG 0.344211 tig0006342:-14793 Msa1343290:CDS
GGGATGGTGGTGGTCGTGAT+AGG 0.344211 tig0006342:-14814 Msa1343290:CDS
ATCTCTAGATCCTTGTGGTT+GGG 0.361996 tig0006342:+15099 None:intergenic
GCATCCATCTACTCACTCTT+AGG 0.363304 tig0006342:-16775 Msa1343290:intron
GATGAGTTTCGTTGCTTCAT+TGG 0.366302 tig0006342:-16026 Msa1343290:CDS
GGGATGGTAGTGGGCGTGAC+AGG 0.381813 tig0006342:-14709 Msa1343290:CDS
GGGCGTGACAGGGACGGTGG+TGG 0.384173 tig0006342:-14740 Msa1343290:CDS
AGGAATGCAGATCGCTCTTA+TGG 0.388029 tig0006342:-14869 Msa1343290:intron
TACATAGACATATTAGTTGC+TGG 0.388090 tig0006342:-14295 Msa1343290:three_prime_UTR
GAGATGGTGGTGGGCGTGAC+AGG 0.391489 tig0006342:-14751 Msa1343290:CDS
GGGATTCTGGTGGTCGTGAC+AGG 0.420547 tig0006342:-14835 Msa1343290:CDS
ATGCTATCATTATTTACTGC+TGG 0.428403 tig0006342:-14324 Msa1343290:three_prime_UTR
AATACCTAAGAGTGAGTAGA+TGG 0.437666 tig0006342:+16771 None:intergenic
CTGAAACAGGCGCGCGCGAC+CGG 0.453707 tig0006342:-16820 Msa1343290:five_prime_UTR
TCGCGTATCGTCAGTTACTT+AGG 0.457716 tig0006342:+16879 None:intergenic
GGGCGTGACAGGGATGGTAG+TGG 0.458203 tig0006342:-14719 Msa1343290:CDS
AGAGAGGCGGAATCTGAAAC+AGG 0.470762 tig0006342:-16833 Msa1343290:five_prime_UTR
AATTGAGCTTGAGCTTGTTC+CGG 0.470775 tig0006342:+16801 None:intergenic
GTGAGTCACGACCACGTTCT+CGG 0.471685 tig0006342:+15062 None:intergenic
TGAATGGTTACATAAGTTGC+TGG 0.476266 tig0006342:-14227 None:intergenic
AAAGATGCATTTGAAAAGTA+CGG 0.478989 tig0006342:-15969 Msa1343290:CDS
CATCTCTAGATCCTTGTGGT+TGG 0.481683 tig0006342:+15098 None:intergenic
GGCGTGACAGGGACGGTGGT+GGG 0.487809 tig0006342:-14739 Msa1343290:CDS
GGTGGGCGTGACAGGGACGG+TGG 0.495437 tig0006342:-14743 Msa1343290:CDS
CTCTTATGGTGGGCGCGACA+GGG 0.500774 tig0006342:-14855 Msa1343290:CDS
GAGTTTCGTTGCTTCATTGG+TGG 0.502387 tig0006342:-16023 Msa1343290:CDS
GGATGGCGGTGGTCGTGATA+GGG 0.515261 tig0006342:-14792 Msa1343290:CDS
GGCGTGACAGGGATGGTAGT+GGG 0.519906 tig0006342:-14718 Msa1343290:CDS
GGCTATGAATGGAATTGACT+TGG 0.522243 tig0006342:-15149 Msa1343290:CDS
AAATTCTCTGGGCGTTCTCG+TGG 0.522551 tig0006342:-15223 Msa1343290:CDS
GGATGGTGGTGGTCGTGATA+GGG 0.522834 tig0006342:-14813 Msa1343290:CDS
GGTCGTGACAGGGATGGTGG+TGG 0.527932 tig0006342:-14824 Msa1343290:CDS
GCTTCATTGGTGGCCTTGCA+TGG 0.529203 tig0006342:-16013 Msa1343290:CDS
GAGGCTATTGAGGCTATGAA+TGG 0.532703 tig0006342:-15160 Msa1343290:CDS
GGTGGTGGGCGTGACAGGGA+TGG 0.543315 tig0006342:-14725 Msa1343290:CDS
TTGTGTGTAGTTTCAAATGT+CGG 0.544631 tig0006342:-16054 Msa1343290:intron
ATTAGTGACTCGTGCATGAA+TGG 0.545167 tig0006342:-14243 Msa1343290:three_prime_UTR
CGGCAAGCTTGTTGAGGCAA+AGG 0.545418 tig0006342:-15949 Msa1343290:intron
AGCAATGGAAGAGGCTATTG+AGG 0.547802 tig0006342:-15170 Msa1343290:CDS
GGTGGTGGGCGTGACAGGGA+CGG 0.549943 tig0006342:-14746 Msa1343290:CDS
ATTTGATGACAAGGAAGCAA+TGG 0.550117 tig0006342:-15185 Msa1343290:CDS
TATCAGAAGTTGACCATGCA+AGG 0.550661 tig0006342:+16000 None:intergenic
GGATGGTAGTGGGCGTGACA+GGG 0.556109 tig0006342:-14708 Msa1343290:CDS
GTAGTTTCAAATGTCGGATA+CGG 0.558465 tig0006342:-16048 Msa1343290:intron
GTTGCTGGATTTACAGCAGT+GGG 0.561015 tig0006342:-14280 Msa1343290:three_prime_UTR
ATTTCAATAGAGCTAACGAT+TGG 0.562109 tig0006342:+14390 None:intergenic
GGACGGTGGTGGGCGTGACA+GGG 0.562966 tig0006342:-14729 Msa1343290:CDS
GACAGGGATCGCGATCGTGC+GGG 0.566766 tig0006342:-14692 Msa1343290:CDS
TGACAGGGATCGCGATCGTG+CGG 0.569790 tig0006342:-14693 Msa1343290:CDS
GGACGTGACAGAGATGGTGG+TGG 0.579527 tig0006342:-14761 Msa1343290:CDS
AATGCAGATCGCTCTTATGG+TGG 0.584861 tig0006342:-14866 Msa1343290:intron
GACGTGACAGAGATGGTGGT+GGG 0.586113 tig0006342:-14760 Msa1343290:CDS
GGTGGTCGTGACAGGGATGG+TGG 0.589081 tig0006342:-14827 Msa1343290:CDS
TGGTGGTTGACAAATTCTCT+GGG 0.595910 tig0006342:-15234 Msa1343290:CDS
GGATTCTGGTGGTCGTGACA+GGG 0.596366 tig0006342:-14834 Msa1343290:CDS
TGACAAGGAAGCAATGGAAG+AGG 0.600324 tig0006342:-15179 Msa1343290:CDS
GGTCGTGATAGGGATGGCGG+TGG 0.600939 tig0006342:-14782 Msa1343290:CDS
ATGCAGATCGCTCTTATGGT+GGG 0.607336 tig0006342:-14865 Msa1343290:intron
AGATGGTGGTGGGCGTGACA+GGG 0.607423 tig0006342:-14750 Msa1343290:CDS
GATGATCGTCACCGAGAACG+TGG 0.610333 tig0006342:-15073 Msa1343290:CDS
TCTGGTGGTCGTGACAGGGA+TGG 0.611424 tig0006342:-14830 Msa1343290:CDS
GTTTGTCACATTTGATGACA+AGG 0.613183 tig0006342:-15194 Msa1343290:CDS
GGCGGTGGTCGTGATAGGGA+TGG 0.616824 tig0006342:-14788 Msa1343290:CDS
AGTTGCTGGATTTACAGCAG+TGG 0.618491 tig0006342:-14281 Msa1343290:three_prime_UTR
ATGAATGGAATTGACTTGGA+TGG 0.625730 tig0006342:-15145 Msa1343290:CDS
GGTGGTGGTCGTGATAGGGA+TGG 0.627036 tig0006342:-14809 Msa1343290:CDS
GGCGGTGGACGTGACAGAGA+TGG 0.640462 tig0006342:-14767 Msa1343290:CDS
TCATCATCTCTAGATCCTTG+TGG 0.641739 tig0006342:+15094 None:intergenic
GGTCGTGATAGGGATGGCGG+TGG 0.641846 tig0006342:-14803 Msa1343290:CDS
GGTGGACGTGACAGAGATGG+TGG 0.651176 tig0006342:-14764 Msa1343290:CDS
GGTGGTCGTGATAGGGATGG+CGG 0.656307 tig0006342:-14806 Msa1343290:CDS
GGGCGCGACAGGGATTCTGG+TGG 0.659692 tig0006342:-14845 Msa1343290:CDS
ATGGAATTGACTTGGATGGA+CGG 0.661188 tig0006342:-15141 Msa1343290:CDS
AAAGTACGGCAAGCTTGTTG+AGG 0.663446 tig0006342:-15955 Msa1343290:CDS
GTTGATAAAGCCCAACCACA+AGG 0.676735 tig0006342:-15109 Msa1343290:CDS
GGTGGTCGTGATAGGGATGG+CGG 0.702840 tig0006342:-14785 Msa1343290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACAAAATAAAATTGAAT+CGG + tig0006342:14442-14461 None:intergenic 10.0%
!!! TAGAAAACCAATTTTATTAT+GGG + tig0006342:15687-15706 None:intergenic 15.0%
!!! TAGTCATTTTTTTGGAATTT+AGG - tig0006342:14562-14581 Msa1343290:intron 20.0%
!!! AGTCATTTTTTTGGAATTTA+GGG - tig0006342:14563-14582 Msa1343290:intron 20.0%
!!! ATGTTGTTTATGTATATATG+TGG - tig0006342:14672-14691 Msa1343290:intron 20.0%
!!! TGTTGTTTATGTATATATGT+GGG - tig0006342:14673-14692 Msa1343290:intron 20.0%
!! ATTCATGTACTAGAAATTAT+GGG - tig0006342:14740-14759 Msa1343290:CDS 20.0%
!! TATTACAATTCTCAACATTA+GGG + tig0006342:14791-14810 None:intergenic 20.0%
!! TTATTACAATTCTCAACATT+AGG + tig0006342:14792-14811 None:intergenic 20.0%
!! AATGTTGAGAATTGTAATAA+AGG - tig0006342:14792-14811 Msa1343290:CDS 20.0%
!! ACATTTAAATTGTGTATTTG+AGG - tig0006342:14937-14956 Msa1343290:intron 20.0%
!! AATATTTAAATCAGCTATAG+GGG + tig0006342:15032-15051 None:intergenic 20.0%
!! GAATATTTAAATCAGCTATA+GGG + tig0006342:15033-15052 None:intergenic 20.0%
!! TGAATATTTAAATCAGCTAT+AGG + tig0006342:15034-15053 None:intergenic 20.0%
!!! ATAGCTGATTTAAATATTCA+AGG - tig0006342:15034-15053 Msa1343290:intron 20.0%
!!! CTTTTATTCATTGATAACAT+TGG - tig0006342:15339-15358 Msa1343290:intron 20.0%
!!! GTAGAAAACCAATTTTATTA+TGG + tig0006342:15688-15707 None:intergenic 20.0%
!!! TACTGAATTTATTTTGTAAG+TGG - tig0006342:15705-15724 Msa1343290:intron 20.0%
!! TAATCATTCATTGACATTTA+AGG - tig0006342:15854-15873 Msa1343290:intron 20.0%
!!! ATATTTTGATTTGCAATACT+TGG - tig0006342:16687-16706 Msa1343290:intron 20.0%
! GAATGAATGAATGAATATGT+TGG + tig0006342:14393-14412 None:intergenic 25.0%
!!! GTTTTGTTTTGATTAGTGTA+TGG - tig0006342:14467-14486 Msa1343290:exon 25.0%
!!! TTTTTTGGAATTTAGGGTTT+TGG - tig0006342:14569-14588 Msa1343290:intron 25.0%
!!! TTTTTGGAATTTAGGGTTTT+GGG - tig0006342:14570-14589 Msa1343290:intron 25.0%
!! CATTTGAGGTTAATTTGATT+GGG - tig0006342:14642-14661 Msa1343290:intron 25.0%
! TTTATGTATATATGTGGGAT+GGG - tig0006342:14678-14697 Msa1343290:intron 25.0%
! GATTCATGTACTAGAAATTA+TGG - tig0006342:14739-14758 Msa1343290:CDS 25.0%
! TTCATGTACTAGAAATTATG+GGG - tig0006342:14741-14760 Msa1343290:CDS 25.0%
! TGTAATAAAGGTGATGTATT+TGG - tig0006342:14804-14823 Msa1343290:CDS 25.0%
! GTAATAAAGGTGATGTATTT+GGG - tig0006342:14805-14824 Msa1343290:CDS 25.0%
!!! TATGATCATTTTAGGGATTT+AGG - tig0006342:14831-14850 Msa1343290:CDS 25.0%
!!! ATGATCATTTTAGGGATTTA+GGG - tig0006342:14832-14851 Msa1343290:CDS 25.0%
!! TATTTGAGGTGAATTTGATT+GGG - tig0006342:14951-14970 Msa1343290:intron 25.0%
! TTTGATTGGGTTTATTATTG+TGG - tig0006342:14964-14983 Msa1343290:intron 25.0%
!! TCTTGTTTATATATGTGTGA+TGG - tig0006342:14997-15016 Msa1343290:intron 25.0%
! CTTGTTTATATATGTGTGAT+GGG - tig0006342:14998-15017 Msa1343290:intron 25.0%
! AAAGATGCATTTGAAAAGTA+CGG - tig0006342:15163-15182 Msa1343290:CDS 25.0%
! AAAAGAAAAATCACAGAAGT+TGG + tig0006342:15324-15343 None:intergenic 25.0%
! TGATAACATTGGATGAAAAA+TGG - tig0006342:15350-15369 Msa1343290:intron 25.0%
! TCAAATTAGTCAATTCAAAC+AGG - tig0006342:15661-15680 Msa1343290:intron 25.0%
!!! TGATTTTTGCAGTTTTGAAT+TGG - tig0006342:16586-16605 Msa1343290:intron 25.0%
!!! AGTGTTCTTGGATTTTTTTA+TGG - tig0006342:16646-16665 Msa1343290:intron 25.0%
TGATTAGTGTATGGAAATCA+TGG - tig0006342:14476-14495 Msa1343290:exon 30.0%
GATTAGTGTATGGAAATCAT+GGG - tig0006342:14477-14496 Msa1343290:exon 30.0%
!! TCATGGGTTTACTTTGATTT+TGG - tig0006342:14493-14512 Msa1343290:CDS 30.0%
TGTAATAAAGCTACTACCTT+TGG - tig0006342:14532-14551 Msa1343290:CDS 30.0%
GTAATAAAGCTACTACCTTT+GGG - tig0006342:14533-14552 Msa1343290:CDS 30.0%
TAATAAAGCTACTACCTTTG+GGG - tig0006342:14534-14553 Msa1343290:CDS 30.0%
!!! GGGTTCTTTAGTCATTTTTT+TGG - tig0006342:14554-14573 Msa1343290:intron 30.0%
TATCCATTTAGTTGTACACT+TGG - tig0006342:14604-14623 Msa1343290:intron 30.0%
TCTACTTAATTGTGCATTTG+AGG - tig0006342:14628-14647 Msa1343290:intron 30.0%
! GCATTTGAGGTTAATTTGAT+TGG - tig0006342:14641-14660 Msa1343290:intron 30.0%
GTTTATGTATATATGTGGGA+TGG - tig0006342:14677-14696 Msa1343290:intron 30.0%
CAAAACAAAAACCAAAACCA+TGG + tig0006342:14720-14739 None:intergenic 30.0%
! TTGGGTTCTATGATCATTTT+AGG - tig0006342:14823-14842 Msa1343290:CDS 30.0%
! TGGGTTCTATGATCATTTTA+GGG - tig0006342:14824-14843 Msa1343290:CDS 30.0%
! GTATTTGAGGTGAATTTGAT+TGG - tig0006342:14950-14969 Msa1343290:intron 30.0%
! TATATATGTGTGATGGGATT+TGG - tig0006342:15004-15023 Msa1343290:intron 30.0%
TTGAAACTACACACAATTGA+AGG + tig0006342:15074-15093 None:intergenic 30.0%
TTGTGTGTAGTTTCAAATGT+CGG - tig0006342:15078-15097 Msa1343290:CDS 30.0%
AGCATGAAATTGTAACAAGA+TGG + tig0006342:15256-15275 None:intergenic 30.0%
AAAATCAGCATACCAAACAT+AGG - tig0006342:15398-15417 Msa1343290:intron 30.0%
ACTTATAGCATCTATGAAAC+AGG + tig0006342:15542-15561 None:intergenic 30.0%
AAACAGGCCCATAATAAAAT+TGG - tig0006342:15677-15696 Msa1343290:intron 30.0%
AATTATACATGGAAGGTCAA+TGG + tig0006342:15739-15758 None:intergenic 30.0%
AGCATACAATTATACATGGA+AGG + tig0006342:15746-15765 None:intergenic 30.0%
TCCATGTATAATTGTATGCT+TGG - tig0006342:15746-15765 Msa1343290:intron 30.0%
CCATGTATAATTGTATGCTT+GGG - tig0006342:15747-15766 Msa1343290:intron 30.0%
GTTATTTGTATGAGAGTGAA+AGG + tig0006342:15780-15799 None:intergenic 30.0%
TTAGCAAGAAAATGTGTGAT+GGG + tig0006342:15834-15853 None:intergenic 30.0%
ATTAGCAAGAAAATGTGTGA+TGG + tig0006342:15835-15854 None:intergenic 30.0%
!!! GCTAAATATTTTGAGTTAGG+TGG - tig0006342:15878-15897 Msa1343290:intron 30.0%
!!! AAATATTTTGAGTTAGGTGG+TGG - tig0006342:15881-15900 Msa1343290:intron 30.0%
! CTTTTTGCACATGTTTTTCA+TGG - tig0006342:16543-16562 Msa1343290:intron 30.0%
!!! TTTTTGCAGTTTTGAATTGG+AGG - tig0006342:16589-16608 Msa1343290:intron 30.0%
!!! TTTTGCAGTTTTGAATTGGA+GGG - tig0006342:16590-16609 Msa1343290:intron 30.0%
ATTTCAATAGAGCTAACGAT+TGG + tig0006342:16745-16764 None:intergenic 30.0%
ATGCTATCATTATTTACTGC+TGG - tig0006342:16808-16827 Msa1343290:five_prime_UTR 30.0%
TACATAGACATATTAGTTGC+TGG - tig0006342:16837-16856 Msa1343290:five_prime_UTR 30.0%
AATACCTAAGAGTGAGTAGA+TGG + tig0006342:14364-14383 None:intergenic 35.0%
AAATGACTAAAGAACCCCAA+AGG + tig0006342:14551-14570 None:intergenic 35.0%
GAACCAAGTGTACAACTAAA+TGG + tig0006342:14610-14629 None:intergenic 35.0%
TATATATGTGGGATGGGATT+TGG - tig0006342:14684-14703 Msa1343290:intron 35.0%
GATTTGGATATCTATAGCCA+TGG - tig0006342:14700-14719 Msa1343290:CDS 35.0%
! GATATCTATAGCCATGGTTT+TGG - tig0006342:14706-14725 Msa1343290:CDS 35.0%
ACTAGAAATTATGGGGTTCT+TGG - tig0006342:14748-14767 Msa1343290:CDS 35.0%
CTAGAAATTATGGGGTTCTT+GGG - tig0006342:14749-14768 Msa1343290:CDS 35.0%
GTAGTTTCAAATGTCGGATA+CGG - tig0006342:15084-15103 Msa1343290:CDS 35.0%
GAAGTTGGCAAAAGTAAAGA+AGG + tig0006342:15309-15328 None:intergenic 35.0%
GCATACCAAACATAGGATAT+TGG - tig0006342:15405-15424 Msa1343290:intron 35.0%
CATCACCAATATCCTATGTT+TGG + tig0006342:15413-15432 None:intergenic 35.0%
CTACACTATCTATCCAAACA+TGG + tig0006342:15436-15455 None:intergenic 35.0%
CCCAAGCATACAATTATACA+TGG + tig0006342:15750-15769 None:intergenic 35.0%
AGGGGATGTATATAGTGAAA+GGG + tig0006342:15802-15821 None:intergenic 35.0%
! AGAAAATGTGTGATGGGAAT+GGG + tig0006342:15828-15847 None:intergenic 35.0%
! AAGAAAATGTGTGATGGGAA+TGG + tig0006342:15829-15848 None:intergenic 35.0%
!!! GGCGCTAAATATTTTGAGTT+AGG - tig0006342:15875-15894 Msa1343290:intron 35.0%
! GTTTGTCACATTTGATGACA+AGG - tig0006342:15938-15957 Msa1343290:intron 35.0%
! ATTTGATGACAAGGAAGCAA+TGG - tig0006342:15947-15966 Msa1343290:intron 35.0%
!! ATGAATGGAATTGACTTGGA+TGG - tig0006342:15987-16006 Msa1343290:CDS 35.0%
!! TCTTTTGATGACAGTGTTCT+TGG - tig0006342:16634-16653 Msa1343290:intron 35.0%
! AATTGAGCTTGAGCTTGTTC+CGG + tig0006342:14334-14353 None:intergenic 40.0%
GATGAGTTTCGTTGCTTCAT+TGG - tig0006342:15106-15125 Msa1343290:CDS 40.0%
TATCAGAAGTTGACCATGCA+AGG + tig0006342:15135-15154 None:intergenic 40.0%
!! GATATTGGTGATGCCATGTT+TGG - tig0006342:15420-15439 Msa1343290:intron 40.0%
CAGGGGATGTATATAGTGAA+AGG + tig0006342:15803-15822 None:intergenic 40.0%
TGGTGGTTGACAAATTCTCT+GGG - tig0006342:15898-15917 Msa1343290:intron 40.0%
GGCTATGAATGGAATTGACT+TGG - tig0006342:15983-16002 Msa1343290:CDS 40.0%
!! ATGGAATTGACTTGGATGGA+CGG - tig0006342:15991-16010 Msa1343290:CDS 40.0%
ATCTCTAGATCCTTGTGGTT+GGG + tig0006342:16036-16055 None:intergenic 40.0%
TCATCATCTCTAGATCCTTG+TGG + tig0006342:16041-16060 None:intergenic 40.0%
! TGCTTTAAGTGTGGTAAACC+CGG - tig0006342:16149-16168 Msa1343290:intron 40.0%
!! TAAACCCGGTCATTTTGCAA+GGG - tig0006342:16163-16182 Msa1343290:intron 40.0%
AGGGAAAGTAGATATAGTGG+TGG - tig0006342:16227-16246 Msa1343290:intron 40.0%
AGTAGATATAGTGGTGGCTA+TGG - tig0006342:16233-16252 Msa1343290:intron 40.0%
! TGATACCTCTAGCTTCATTG+AGG - tig0006342:16497-16516 Msa1343290:intron 40.0%
AAGTACCTCAATGAAGCTAG+AGG + tig0006342:16505-16524 None:intergenic 40.0%
ATTAGTGACTCGTGCATGAA+TGG - tig0006342:16889-16908 Msa1343290:five_prime_UTR 40.0%
TCGCGTATCGTCAGTTACTT+AGG + tig0006342:14256-14275 None:intergenic 45.0%
GCATCCATCTACTCACTCTT+AGG - tig0006342:14357-14376 Msa1343290:three_prime_UTR 45.0%
! GGGATTTAGGGTATCAGTTG+TGG - tig0006342:14844-14863 Msa1343290:CDS 45.0%
GAGTTTCGTTGCTTCATTGG+TGG - tig0006342:15109-15128 Msa1343290:CDS 45.0%
!! AAAGTACGGCAAGCTTGTTG+AGG - tig0006342:15177-15196 Msa1343290:CDS 45.0%
GTGGTGGTTGACAAATTCTC+TGG - tig0006342:15897-15916 Msa1343290:intron 45.0%
TGACAAGGAAGCAATGGAAG+AGG - tig0006342:15953-15972 Msa1343290:CDS 45.0%
AGCAATGGAAGAGGCTATTG+AGG - tig0006342:15962-15981 Msa1343290:CDS 45.0%
GAGGCTATTGAGGCTATGAA+TGG - tig0006342:15972-15991 Msa1343290:CDS 45.0%
! GTTGATAAAGCCCAACCACA+AGG - tig0006342:16023-16042 Msa1343290:CDS 45.0%
CATCTCTAGATCCTTGTGGT+TGG + tig0006342:16037-16056 None:intergenic 45.0%
AATCGTAGCCGAGATTATGG+AGG - tig0006342:16101-16120 Msa1343290:intron 45.0%
CTCGACTACCTCCATAATCT+CGG + tig0006342:16112-16131 None:intergenic 45.0%
GAGATTATGGAGGTAGTCGA+GGG - tig0006342:16111-16130 Msa1343290:intron 45.0%
!! GTAAACCCGGTCATTTTGCA+AGG - tig0006342:16162-16181 Msa1343290:intron 45.0%
CTCCTCTTTCTCCTTCACTA+GGG + tig0006342:16193-16212 None:intergenic 45.0%
GGCAGGGAAAGTAGATATAG+TGG - tig0006342:16224-16243 Msa1343290:intron 45.0%
AGGAATGCAGATCGCTCTTA+TGG - tig0006342:16263-16282 Msa1343290:intron 45.0%
AATGCAGATCGCTCTTATGG+TGG - tig0006342:16266-16285 Msa1343290:intron 45.0%
ATGCAGATCGCTCTTATGGT+GGG - tig0006342:16267-16286 Msa1343290:intron 45.0%
!! GAAGCTAGAGGTATCAACGA+TGG + tig0006342:16493-16512 None:intergenic 45.0%
AGTTGCTGGATTTACAGCAG+TGG - tig0006342:16851-16870 Msa1343290:five_prime_UTR 45.0%
GTTGCTGGATTTACAGCAGT+GGG - tig0006342:16852-16871 Msa1343290:five_prime_UTR 45.0%
AGAGAGAGAGAGAGAGAGAG+AGG - tig0006342:14275-14294 Msa1343290:three_prime_UTR 50.0%
! AGAGAGGCGGAATCTGAAAC+AGG - tig0006342:14299-14318 Msa1343290:three_prime_UTR 50.0%
AAGCCATCCTAGAGAGCTTC+TGG - tig0006342:15571-15590 Msa1343290:intron 50.0%
! TGTCCAGAAGCTCTCTAGGA+TGG + tig0006342:15577-15596 None:intergenic 50.0%
GTCATGTCCAGAAGCTCTCT+AGG + tig0006342:15581-15600 None:intergenic 50.0%
! TGTGATGGGAATGGGATCAG+GGG + tig0006342:15820-15839 None:intergenic 50.0%
! GTGTGATGGGAATGGGATCA+GGG + tig0006342:15821-15840 None:intergenic 50.0%
! TGTGTGATGGGAATGGGATC+AGG + tig0006342:15822-15841 None:intergenic 50.0%
AAATTCTCTGGGCGTTCTCG+TGG - tig0006342:15909-15928 Msa1343290:intron 50.0%
CGCAATCGTAGCCGAGATTA+TGG - tig0006342:16098-16117 Msa1343290:intron 50.0%
CGAGATTATGGAGGTAGTCG+AGG - tig0006342:16110-16129 Msa1343290:intron 50.0%
! GGCGGTGAATGCTTTAAGTG+TGG - tig0006342:16140-16159 Msa1343290:intron 50.0%
CACTCCCTTGCAAAATGACC+GGG + tig0006342:16170-16189 None:intergenic 50.0%
GCACTCCCTTGCAAAATGAC+CGG + tig0006342:16171-16190 None:intergenic 50.0%
TGCCCTAGTGAAGGAGAAAG+AGG - tig0006342:16188-16207 Msa1343290:intron 50.0%
CCTCCTCTTTCTCCTTCACT+AGG + tig0006342:16194-16213 None:intergenic 50.0%
CCTAGTGAAGGAGAAAGAGG+AGG - tig0006342:16191-16210 Msa1343290:intron 50.0%
GTGAAGGAGAAAGAGGAGGA+AGG - tig0006342:16195-16214 Msa1343290:intron 50.0%
GGAGAAAGAGGAGGAAGGTA+TGG - tig0006342:16200-16219 Msa1343290:intron 50.0%
! GAAAGAGGAGGAAGGTATGG+TGG - tig0006342:16203-16222 Msa1343290:intron 50.0%
GAGCGATCTGCATTCCTATC+AGG + tig0006342:16260-16279 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGG+CGG - tig0006342:14286-14305 Msa1343290:three_prime_UTR 55.0%
! GCTTCATTGGTGGCCTTGCA+TGG - tig0006342:15119-15138 Msa1343290:CDS 55.0%
!! CGGCAAGCTTGTTGAGGCAA+AGG - tig0006342:15183-15202 Msa1343290:CDS 55.0%
! TCTGGGCGTTCTCGTGGTTT+TGG - tig0006342:15915-15934 Msa1343290:intron 55.0%
! CTGGGCGTTCTCGTGGTTTT+GGG - tig0006342:15916-15935 Msa1343290:intron 55.0%
GATGATCGTCACCGAGAACG+TGG - tig0006342:16059-16078 Msa1343290:intron 55.0%
GTGAGTCACGACCACGTTCT+CGG + tig0006342:16073-16092 None:intergenic 55.0%
GGAGGTAGTCGAGGGTCTAA+TGG - tig0006342:16119-16138 Msa1343290:intron 55.0%
GGTAGTCGAGGGTCTAATGG+CGG - tig0006342:16122-16141 Msa1343290:intron 55.0%
! AGGAGGAAGGTATGGTGGCA+GGG - tig0006342:16208-16227 Msa1343290:intron 55.0%
GTGGTGGCTATGGTCCTGAT+AGG - tig0006342:16243-16262 Msa1343290:intron 55.0%
GGATTCTGGTGGTCGTGACA+GGG - tig0006342:16298-16317 Msa1343290:intron 55.0%
!! GGATGGTGGTGGTCGTGATA+GGG - tig0006342:16319-16338 Msa1343290:intron 55.0%
! GACGTGACAGAGATGGTGGT+GGG - tig0006342:16372-16391 Msa1343290:intron 55.0%
CCAGATCCACGACGCTCATA+CGG + tig0006342:16467-16486 None:intergenic 55.0%
! TATGAGCGTCGTGGATCTGG+AGG - tig0006342:16467-16486 Msa1343290:intron 55.0%
!! GCAAGGGAGTGCCCTAGTGA+AGG - tig0006342:16179-16198 Msa1343290:intron 60.0%
! GAGGAGGAAGGTATGGTGGC+AGG - tig0006342:16207-16226 Msa1343290:intron 60.0%
!! CTCTTATGGTGGGCGCGACA+GGG - tig0006342:16277-16296 Msa1343290:intron 60.0%
GGGATTCTGGTGGTCGTGAC+AGG - tig0006342:16297-16316 Msa1343290:intron 60.0%
TCTGGTGGTCGTGACAGGGA+TGG - tig0006342:16302-16321 Msa1343290:intron 60.0%
!! GGGATGGTGGTGGTCGTGAT+AGG - tig0006342:16318-16337 Msa1343290:intron 60.0%
! GGTGGTGGTCGTGATAGGGA+TGG - tig0006342:16323-16342 Msa1343290:intron 60.0%
GGTGGTCGTGATAGGGATGG+CGG - tig0006342:16326-16345 Msa1343290:intron 60.0%
! GGATGGCGGTGGTCGTGATA+GGG - tig0006342:16340-16359 Msa1343290:intron 60.0%
GGTGGTCGTGATAGGGATGG+CGG - tig0006342:16326-16345 Msa1343290:intron 60.0%
GGTGGACGTGACAGAGATGG+TGG - tig0006342:16368-16387 Msa1343290:intron 60.0%
! GGACGTGACAGAGATGGTGG+TGG - tig0006342:16371-16390 Msa1343290:intron 60.0%
!! AGATGGTGGTGGGCGTGACA+GGG - tig0006342:16382-16401 Msa1343290:intron 60.0%
GGCGTGACAGGGATGGTAGT+GGG - tig0006342:16414-16433 Msa1343290:intron 60.0%
!! GGATGGTAGTGGGCGTGACA+GGG - tig0006342:16424-16443 Msa1343290:intron 60.0%
TGACAGGGATCGCGATCGTG+CGG - tig0006342:16439-16458 Msa1343290:intron 60.0%
! CCGTATGAGCGTCGTGGATC+TGG - tig0006342:16464-16483 Msa1343290:intron 60.0%
!! GCTCTTATGGTGGGCGCGAC+AGG - tig0006342:16276-16295 Msa1343290:intron 65.0%
GGTGGTCGTGACAGGGATGG+TGG - tig0006342:16305-16324 Msa1343290:intron 65.0%
! GGTCGTGACAGGGATGGTGG+TGG - tig0006342:16308-16327 Msa1343290:intron 65.0%
! GGTCGTGATAGGGATGGCGG+TGG - tig0006342:16329-16348 Msa1343290:intron 65.0%
! GGGATGGCGGTGGTCGTGAT+AGG - tig0006342:16339-16358 Msa1343290:intron 65.0%
GGCGGTGGTCGTGATAGGGA+TGG - tig0006342:16344-16363 Msa1343290:intron 65.0%
! GGTCGTGATAGGGATGGCGG+TGG - tig0006342:16329-16348 Msa1343290:intron 65.0%
GGCGGTGGACGTGACAGAGA+TGG - tig0006342:16365-16384 Msa1343290:intron 65.0%
!! GAGATGGTGGTGGGCGTGAC+AGG - tig0006342:16381-16400 Msa1343290:intron 65.0%
GGGCGTGACAGGGATGGTAG+TGG - tig0006342:16413-16432 Msa1343290:intron 65.0%
!! GGGATGGTAGTGGGCGTGAC+AGG - tig0006342:16423-16442 Msa1343290:intron 65.0%
GACAGGGATCGCGATCGTGC+GGG - tig0006342:16440-16459 Msa1343290:intron 65.0%
CTGAAACAGGCGCGCGCGAC+CGG - tig0006342:14312-14331 Msa1343290:three_prime_UTR 70.0%
GGTGGGCGCGACAGGGATTC+TGG - tig0006342:16284-16303 Msa1343290:intron 70.0%
GGGCGCGACAGGGATTCTGG+TGG - tig0006342:16287-16306 Msa1343290:intron 70.0%
!! GGTGGTGGGCGTGACAGGGA+CGG - tig0006342:16386-16405 Msa1343290:intron 70.0%
GGCGTGACAGGGACGGTGGT+GGG - tig0006342:16393-16412 Msa1343290:intron 70.0%
!! GGACGGTGGTGGGCGTGACA+GGG - tig0006342:16403-16422 Msa1343290:intron 70.0%
!! GGTGGTGGGCGTGACAGGGA+TGG - tig0006342:16386-16405 Msa1343290:intron 70.0%
! GCGGGACCGTATGAGCGTCG+TGG - tig0006342:16458-16477 Msa1343290:intron 70.0%
GGTGGGCGTGACAGGGACGG+TGG - tig0006342:16389-16408 Msa1343290:intron 75.0%
GGGCGTGACAGGGACGGTGG+TGG - tig0006342:16392-16411 Msa1343290:intron 75.0%
!! GGGACGGTGGTGGGCGTGAC+AGG - tig0006342:16402-16421 Msa1343290:intron 75.0%
Chromosome Type Strat End Strand Name
tig0006342 gene 14228 16926 14228 ID=Msa1343290;Name=Msa1343290
tig0006342 mRNA 14228 16926 14228 ID=Msa1343290-mRNA-1;Parent=Msa1343290;Name=Msa1343290-mRNA-1;_AED=0.10;_eAED=0.13;_QI=157|0.5|0.6|1|0.75|0.8|5|250|192
tig0006342 exon 14228 14556 14228 ID=Msa1343290-mRNA-1:exon:4091;Parent=Msa1343290-mRNA-1
tig0006342 exon 14689 14881 14689 ID=Msa1343290-mRNA-1:exon:4090;Parent=Msa1343290-mRNA-1
tig0006342 exon 15062 15257 15062 ID=Msa1343290-mRNA-1:exon:4089;Parent=Msa1343290-mRNA-1
tig0006342 exon 15950 16066 15950 ID=Msa1343290-mRNA-1:exon:4088;Parent=Msa1343290-mRNA-1
tig0006342 exon 16776 16926 16776 ID=Msa1343290-mRNA-1:exon:4087;Parent=Msa1343290-mRNA-1
tig0006342 five_prime_UTR 16776 16926 16776 ID=Msa1343290-mRNA-1:five_prime_utr;Parent=Msa1343290-mRNA-1
tig0006342 five_prime_UTR 16061 16066 16061 ID=Msa1343290-mRNA-1:five_prime_utr;Parent=Msa1343290-mRNA-1
tig0006342 CDS 15950 16060 15950 ID=Msa1343290-mRNA-1:cds;Parent=Msa1343290-mRNA-1
tig0006342 CDS 15062 15257 15062 ID=Msa1343290-mRNA-1:cds;Parent=Msa1343290-mRNA-1
tig0006342 CDS 14689 14881 14689 ID=Msa1343290-mRNA-1:cds;Parent=Msa1343290-mRNA-1
tig0006342 CDS 14478 14556 14478 ID=Msa1343290-mRNA-1:cds;Parent=Msa1343290-mRNA-1
tig0006342 three_prime_UTR 14228 14477 14228 ID=Msa1343290-mRNA-1:three_prime_utr;Parent=Msa1343290-mRNA-1
Gene Sequence

>Msa1343290

ATGTCGGATACGGATGAGTTTCGTTGCTTCATTGGTGGCCTTGCATGGTCAACTTCTGATAGAAGATTAAAAGATGCATTTGAAAAGTACGGCAAGCTTGTTGAGGCAAAGGTGGTGGTTGACAAATTCTCTGGGCGTTCTCGTGGTTTTGGGTTTGTCACATTTGATGACAAGGAAGCAATGGAAGAGGCTATTGAGGCTATGAATGGAATTGACTTGGATGGACGGACTATTACTGTTGATAAAGCCCAACCACAAGGATCTAGAGATGATGATGATCGTCACCGAGAACGTGGTCGTGACTCACATCGCTCTTATGGTGGGCGCGACAGGGATTCTGGTGGTCGTGACAGGGATGGTGGTGGTCGTGATAGGGATGGCGGTGGTCGTGATAGGGATGGCGGTGGACGTGACAGAGATGGTGGTGGGCGTGACAGGGACGGTGGTGGGCGTGACAGGGATGGTAGTGGGCGTGACAGGGATCGCGATCGTGCGGGACCTTTTGAATTGGAGGGTTTCTGTGCTGCTTCAACTTTTCTTTTGATGACAGTGTTCTTGGATTTTTTTATGGATGTATGA
Protein sequence

>Msa1343290

MSDTDEFRCFIGGLAWSTSDRRLKDAFEKYGKLVEAKVVVDKFSGRSRGFGFVTFDDKEAMEEAIEAMNGIDLDGRTITVDKAQPQGSRDDDDRHRERGRDSHRSYGGRDRDSGGRDRDGGGRDRDGGGRDRDGGGRDRDGGGRDRDGGGRDRDGSGRDRDRDRAGPFELEGFCAASTFLLMTVFLDFFMDV*