AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1341930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1341930 MtrunA17_Chr4g0005721 93.258 178 12 0 3 180 52 229 5.69e-120 338
Msa1341930 MtrunA17_Chr1g0174241 34.706 170 92 6 12 179 173 325 1.40e-19 84.3
Msa1341930 MtrunA17_Chr1g0198131 35.294 153 83 5 28 179 165 302 4.31e-17 77.0
Msa1341930 MtrunA17_Chr1g0174221 30.065 153 90 5 28 179 97 233 6.64e-15 70.5
Msa1341930 MtrunA17_Chr3g0122741 29.412 153 90 4 28 179 12 147 1.40e-14 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1341930 AT2G38025.2 64.835 182 58 2 4 179 29 210 4.91e-75 224
Msa1341930 AT2G38025.1 66.474 173 52 2 13 179 61 233 6.18e-75 224
Msa1341930 AT3G57810.2 34.416 154 83 4 28 180 168 304 1.01e-21 90.1
Msa1341930 AT3G57810.4 34.416 154 83 4 28 180 168 304 1.01e-21 90.1
Msa1341930 AT3G57810.3 34.416 154 83 4 28 180 168 304 1.01e-21 90.1

Find 74 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACTAACTTATAATAATT+TGG 0.041709 tig0004983:-2825 Msa1341930:intergenic
GCAAGATGTTTCTGATATTT+AGG 0.150418 tig0004983:+650 Msa1341930:five_prime_UTR
GGATTGGGCAACCTGATTTC+TGG 0.156112 tig0004983:+1970 Msa1341930:CDS
AATTGGGGTAATAGTCATTT+TGG 0.177304 tig0004983:+2857 Msa1341930:three_prime_UTR
TTAGTTTGATAATTTATAAT+TGG 0.225266 tig0004983:+2840 Msa1341930:three_prime_UTR
GTATGGAAGTGAATTTAAAA+AGG 0.264562 tig0004983:+2547 Msa1341930:CDS
TCAAATGATAATTAGCCTAA+TGG 0.297630 tig0004983:-2778 Msa1341930:intergenic
TTCATTCCGATTGCCGAGTA+TGG 0.298574 tig0004983:+2530 Msa1341930:CDS
TAGTTTGATAATTTATAATT+GGG 0.301501 tig0004983:+2841 Msa1341930:three_prime_UTR
AAAGGTATCTTCATCAATAA+TGG 0.311867 tig0004983:+715 Msa1341930:five_prime_UTR
TCTGGTATGTACACAATAAT+TGG 0.313597 tig0004983:-2349 Msa1341930:intergenic
AAACTAACTTATAATAATTT+GGG 0.337402 tig0004983:-2824 Msa1341930:intergenic
AGAGGCGGTGGTCGGGGATC+TGG 0.355109 tig0004983:+2506 Msa1341930:CDS
GATTCTCCTCCCCAGAAATC+AGG 0.356950 tig0004983:-1981 Msa1341930:intergenic
GCAGTTACTGCAGGCGGATT+GGG 0.359521 tig0004983:+1955 Msa1341930:intron
TGCAGTTACTGCAGGCGGAT+TGG 0.360734 tig0004983:+1954 Msa1341930:intron
GATTGGGCAACCTGATTTCT+GGG 0.372109 tig0004983:+1971 Msa1341930:CDS
ATGTGTTGTGTACTTGTGTT+TGG 0.374615 tig0004983:+777 Msa1341930:CDS
ACATTAATTACCTTCCCATT+AGG 0.378095 tig0004983:+2763 Msa1341930:three_prime_UTR
CATTATGACCTTCTGTTATG+AGG 0.384606 tig0004983:+2614 Msa1341930:CDS
CAGAAGTGAAACTCTGAGTA+TGG 0.384691 tig0004983:-2701 Msa1341930:intergenic
CAAATGATAATTAGCCTAAT+GGG 0.384846 tig0004983:-2777 Msa1341930:intergenic
CTCATAACAGAAGGTCATAA+TGG 0.393100 tig0004983:-2613 Msa1341930:intergenic
GCAGCATAGAGGCGGTGGTC+GGG 0.413029 tig0004983:+2499 Msa1341930:intron
CGGCTACCCATCACACATTC+GGG 0.413956 tig0004983:-2882 Msa1341930:intergenic
GCGGCTACCCATCACACATT+CGG 0.420843 tig0004983:-2883 Msa1341930:intergenic
GCGGTGTCTGTTTCGTGCTC+TGG 0.442002 tig0004983:+887 Msa1341930:CDS
GGGAGGAGAATCAGAACTAT+TGG 0.442300 tig0004983:+1992 Msa1341930:CDS
ATCAACTGTGACAGCAATGA+TGG 0.457267 tig0004983:-1827 Msa1341930:intergenic
TTTAAATTCACTTCCATACT+CGG 0.461333 tig0004983:-2543 Msa1341930:intergenic
TCCACCACTGTGAGAACATA+AGG 0.471574 tig0004983:-805 Msa1341930:intergenic
CAGCATAGAGGCGGTGGTCG+GGG 0.476465 tig0004983:+2500 Msa1341930:intron
TGAAGGCATACCTCATGCTC+TGG 0.484252 tig0004983:-2367 Msa1341930:intergenic
GTTCAGAAAGTTACAGGGGA+TGG 0.493144 tig0004983:+864 Msa1341930:CDS
TCACTTCCATACTCGGCAAT+CGG 0.507697 tig0004983:-2536 Msa1341930:intergenic
TAACACAGATGAACTAAGAA+TGG 0.521962 tig0004983:+1750 Msa1341930:intron
CAAAGGAATGGCTCACAACA+AGG 0.527955 tig0004983:+1451 Msa1341930:CDS
GAAGCTATATGTGAAAATGT+AGG 0.546789 tig0004983:+1781 Msa1341930:CDS
AGTTTGATAATTTATAATTG+GGG 0.550558 tig0004983:+2842 Msa1341930:three_prime_UTR
TTCAGAAAGTTACAGGGGAT+GGG 0.550770 tig0004983:+865 Msa1341930:CDS
TCCTTATGTTCTCACAGTGG+TGG 0.553106 tig0004983:+804 Msa1341930:CDS
ATGAAATCAGGTCAAAGGAA+TGG 0.557639 tig0004983:+1439 Msa1341930:intron
GTTCAATGAAATCAGGTCAA+AGG 0.558258 tig0004983:+1434 Msa1341930:intron
TTTGGTACCCGAATGTGTGA+TGG 0.567959 tig0004983:+2875 Msa1341930:three_prime_UTR
TGCAGCATAGAGGCGGTGGT+CGG 0.570182 tig0004983:+2498 Msa1341930:intron
ACCGCTGAACAATAGCCTCA+CGG 0.579908 tig0004983:-2585 Msa1341930:intergenic
GGGCAACCTGATTTCTGGGG+AGG 0.583375 tig0004983:+1975 Msa1341930:CDS
AGGAATTGTATCGGCGAAGG+AGG 0.586453 tig0004983:+2634 Msa1341930:exon
TGTGAGAGTATCTACGCTAG+TGG 0.587204 tig0004983:-2743 Msa1341930:intergenic
TTGGTACCCGAATGTGTGAT+GGG 0.600266 tig0004983:+2876 Msa1341930:three_prime_UTR
AATGGCTCACAACAAGGGAA+TGG 0.600900 tig0004983:+1457 Msa1341930:CDS
ATGAGGAATTGTATCGGCGA+AGG 0.604741 tig0004983:+2631 Msa1341930:exon
TCTACGCTAGTGGGAAAACA+AGG 0.604879 tig0004983:-2733 Msa1341930:intergenic
GATTCATTGATGGAATATTG+CGG 0.605902 tig0004983:-2902 Msa1341930:intergenic
AAAATGCAGCATAGAGGCGG+TGG 0.608132 tig0004983:+2494 Msa1341930:intron
TTTCAGTTCAGAAAGTTACA+GGG 0.613627 tig0004983:+859 Msa1341930:CDS
TTTGCTGCAGTTACTGCAGG+CGG 0.617614 tig0004983:+1949 Msa1341930:intron
TCTAAAACACACCGTTGCAG+AGG 0.622955 tig0004983:-1853 Msa1341930:intergenic
ATACAATTCCTCATAACAGA+AGG 0.623406 tig0004983:-2622 Msa1341930:intergenic
TCTGTTATGAGGAATTGTAT+CGG 0.624608 tig0004983:+2625 Msa1341930:exon
CGCGAGGAGAGAGAAAATGC+AGG 0.629042 tig0004983:+1491 Msa1341930:CDS
TTCAGTTCAGAAAGTTACAG+GGG 0.629669 tig0004983:+860 Msa1341930:CDS
GTGAGAGTATCTACGCTAGT+GGG 0.632214 tig0004983:-2742 Msa1341930:intergenic
TGTGTACATACCAGAGCATG+AGG 0.636499 tig0004983:+2357 Msa1341930:CDS
CAGTTGATGAGCCTCTGCAA+CGG 0.648167 tig0004983:+1842 Msa1341930:CDS
TGATAATTAGCCTAATGGGA+AGG 0.650064 tig0004983:-2773 Msa1341930:intergenic
ATTGGGCAACCTGATTTCTG+GGG 0.653227 tig0004983:+1972 Msa1341930:CDS
CACTGTGAGAACATAAGGAG+AGG 0.661894 tig0004983:-800 Msa1341930:intergenic
AAAGGAATGGCTCACAACAA+GGG 0.664021 tig0004983:+1452 Msa1341930:CDS
CTCTCCTTATGTTCTCACAG+TGG 0.670767 tig0004983:+801 Msa1341930:CDS
AGAAAGTTACAGGGGATGGG+CGG 0.674418 tig0004983:+868 Msa1341930:CDS
GCCGTGAGGCTATTGTTCAG+CGG 0.691179 tig0004983:+2584 Msa1341930:CDS
AATGGCTCTTAACCAACGCG+AGG 0.698050 tig0004983:+1475 Msa1341930:CDS
GTTCTAGCAGAAAAGCCGTG+AGG 0.781947 tig0004983:+2570 Msa1341930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAAAAAAAAATAT+AGG - tig0004983:1659-1678 Msa1341930:intergenic 0.0%
!! AAAGATAAAAATTGATAAAA+AGG - tig0004983:1001-1020 Msa1341930:intergenic 10.0%
!!! TATCTAACTAATATTTTATA+AGG + tig0004983:2419-2438 Msa1341930:intron 10.0%
!! AAACTAACTTATAATAATTT+GGG - tig0004983:2827-2846 Msa1341930:intergenic 10.0%
!!! TTAGTTTGATAATTTATAAT+TGG + tig0004983:2840-2859 Msa1341930:three_prime_UTR 10.0%
!!! TAGTTTGATAATTTATAATT+GGG + tig0004983:2841-2860 Msa1341930:three_prime_UTR 10.0%
!!! GTTTTTCAAATTAATTTTAG+AGG + tig0004983:1395-1414 Msa1341930:intron 15.0%
!!! ACTAAATAGATTTTCTTATT+TGG + tig0004983:2065-2084 Msa1341930:intron 15.0%
!! CAAACTAACTTATAATAATT+TGG - tig0004983:2828-2847 Msa1341930:intergenic 15.0%
!!! AGTTTGATAATTTATAATTG+GGG + tig0004983:2842-2861 Msa1341930:three_prime_UTR 15.0%
!!! TTAAAATTTTGATTCATTGA+TGG - tig0004983:2915-2934 Msa1341930:intergenic 15.0%
!!! AATTTGAACTCTTTTCTTAA+TGG + tig0004983:742-761 Msa1341930:five_prime_UTR 20.0%
!! GTGAAAAAAATCTATAACAA+AGG - tig0004983:931-950 Msa1341930:intergenic 20.0%
!!! TTACATATAGCAGATTTTTA+TGG - tig0004983:1329-1348 Msa1341930:intergenic 20.0%
!!! AAATTAATTTTAGAGGTAAG+CGG + tig0004983:1402-1421 Msa1341930:intron 20.0%
!! AAAATGAAAACAAAGTGAAT+GGG - tig0004983:1703-1722 Msa1341930:intergenic 20.0%
!!! AGATCTTAATTTTCTGTTAA+TGG - tig0004983:1881-1900 Msa1341930:intergenic 20.0%
!! TTTGTATTTAATGCAATGAT+TGG + tig0004983:1917-1936 Msa1341930:intron 20.0%
!!! AAACTAAGTATTGTTTTTGA+AGG - tig0004983:2387-2406 Msa1341930:intergenic 20.0%
!!! CAATACTTAGTTTTATCATT+TGG + tig0004983:2394-2413 Msa1341930:intron 20.0%
!! TATGGAAGTGAATTTAAAAA+GGG + tig0004983:2548-2567 Msa1341930:CDS 20.0%
!! ATAAGTACTTATTGTCATAT+CGG - tig0004983:3030-3049 Msa1341930:intergenic 20.0%
!! TATGACAATAAGTACTTATA+TGG + tig0004983:3031-3050 Msa1341930:intron 20.0%
!! ATTGTCTTTTCTGCTAAAAA+AGG + tig0004983:697-716 Msa1341930:five_prime_UTR 25.0%
!!! AAAGGTATCTTCATCAATAA+TGG + tig0004983:715-734 Msa1341930:five_prime_UTR 25.0%
! AACTTAAGCTATAAAAGACA+TGG + tig0004983:1202-1221 Msa1341930:intron 25.0%
! AACTGAACTTATATATTGCT+AGG - tig0004983:1243-1262 Msa1341930:intergenic 25.0%
!!! TTTTTATGGACTGACATATT+TGG - tig0004983:1315-1334 Msa1341930:intergenic 25.0%
! TGAAAGCAAAACAAACAAAA+GGG - tig0004983:1555-1574 Msa1341930:intergenic 25.0%
! AAAGTGAATGGGAAAAATAA+AGG - tig0004983:1692-1711 Msa1341930:intergenic 25.0%
! GAAAATGAAAACAAAGTGAA+TGG - tig0004983:1704-1723 Msa1341930:intergenic 25.0%
! AACAGAAAATTAAGATCTTG+AGG + tig0004983:1883-1902 Msa1341930:intron 25.0%
! AGAAAATCTATTTAGTCCTT+AGG - tig0004983:2061-2080 Msa1341930:intergenic 25.0%
! ATCAATGTCCATATTCTTTA+AGG + tig0004983:2303-2322 Msa1341930:intron 25.0%
! TTTAAATTCACTTCCATACT+CGG - tig0004983:2546-2565 Msa1341930:intergenic 25.0%
! GTATGGAAGTGAATTTAAAA+AGG + tig0004983:2547-2566 Msa1341930:CDS 25.0%
!! CAAATGATAATTAGCCTAAT+GGG - tig0004983:2780-2799 Msa1341930:intergenic 25.0%
!! TCAAATGATAATTAGCCTAA+TGG - tig0004983:2781-2800 Msa1341930:intergenic 25.0%
! GCAAGATGTTTCTGATATTT+AGG + tig0004983:650-669 Msa1341930:five_prime_UTR 30.0%
! TTTTCAGTTCAGAAAGTTAC+AGG + tig0004983:858-877 Msa1341930:CDS 30.0%
TTTCAGTTCAGAAAGTTACA+GGG + tig0004983:859-878 Msa1341930:CDS 30.0%
TATAACAAAGGCAATGAAGA+TGG - tig0004983:919-938 Msa1341930:intergenic 30.0%
! AGACTTTATTTACAAGCTTC+TGG + tig0004983:1077-1096 Msa1341930:intron 30.0%
!!! CTACTTGACAATGTTTTTTG+TGG - tig0004983:1155-1174 Msa1341930:intergenic 30.0%
CACAAAAAACATTGTCAAGT+AGG + tig0004983:1153-1172 Msa1341930:intron 30.0%
TACATCAATTGGATTGAAGA+CGG - tig0004983:1283-1302 Msa1341930:intergenic 30.0%
CTTCAATCCAATTGATGTAT+CGG + tig0004983:1284-1303 Msa1341930:intron 30.0%
GATAAACTAGCAATAAGACA+TGG + tig0004983:1520-1539 Msa1341930:intron 30.0%
GAAAGCAAAACAAACAAAAG+GGG - tig0004983:1554-1573 Msa1341930:intergenic 30.0%
CTGAAAGCAAAACAAACAAA+AGG - tig0004983:1556-1575 Msa1341930:intergenic 30.0%
!!! GTTTGTTTTGCTTTCAGTTA+AGG + tig0004983:1559-1578 Msa1341930:intron 30.0%
TAGTTCATCTGTGTTATCAT+GGG - tig0004983:1746-1765 Msa1341930:intergenic 30.0%
TTAGTTCATCTGTGTTATCA+TGG - tig0004983:1747-1766 Msa1341930:intergenic 30.0%
TAACACAGATGAACTAAGAA+TGG + tig0004983:1750-1769 Msa1341930:intron 30.0%
GAAGCTATATGTGAAAATGT+AGG + tig0004983:1781-1800 Msa1341930:CDS 30.0%
!!! GTTTTATCTGTTGACTCATT+GGG - tig0004983:2172-2191 Msa1341930:intergenic 30.0%
!!! AGTTTTATCTGTTGACTCAT+TGG - tig0004983:2173-2192 Msa1341930:intergenic 30.0%
TGACAGTACCTTAAAGAATA+TGG - tig0004983:2314-2333 Msa1341930:intergenic 30.0%
TCTGGTATGTACACAATAAT+TGG - tig0004983:2352-2371 Msa1341930:intergenic 30.0%
AAACTAAAAATGCAGCATAG+AGG + tig0004983:2488-2507 Msa1341930:intron 30.0%
ATACAATTCCTCATAACAGA+AGG - tig0004983:2625-2644 Msa1341930:intergenic 30.0%
TCTGTTATGAGGAATTGTAT+CGG + tig0004983:2625-2644 Msa1341930:exon 30.0%
ACATTAATTACCTTCCCATT+AGG + tig0004983:2763-2782 Msa1341930:three_prime_UTR 30.0%
! AATTGGGGTAATAGTCATTT+TGG + tig0004983:2857-2876 Msa1341930:three_prime_UTR 30.0%
GATTCATTGATGGAATATTG+CGG - tig0004983:2905-2924 Msa1341930:intergenic 30.0%
ATGTGTTGTGTACTTGTGTT+TGG + tig0004983:777-796 Msa1341930:CDS 35.0%
TTCAGTTCAGAAAGTTACAG+GGG + tig0004983:860-879 Msa1341930:CDS 35.0%
ATTCGGCTACAAAACTGAAA+AGG - tig0004983:953-972 Msa1341930:intergenic 35.0%
TATTGAACTGCCTTGATTCT+AGG + tig0004983:1051-1070 Msa1341930:intron 35.0%
ATTGAACTGCCTTGATTCTA+GGG + tig0004983:1052-1071 Msa1341930:intron 35.0%
AAAGTCTAACCCTAGAATCA+AGG - tig0004983:1064-1083 Msa1341930:intergenic 35.0%
!! AGACGGATTATGTCATTAGA+TGG - tig0004983:1266-1285 Msa1341930:intergenic 35.0%
! ACAGTTGGTTCAATGAAATC+AGG + tig0004983:1427-1446 Msa1341930:intron 35.0%
GTTCAATGAAATCAGGTCAA+AGG + tig0004983:1434-1453 Msa1341930:intron 35.0%
ATGAAATCAGGTCAAAGGAA+TGG + tig0004983:1439-1458 Msa1341930:intron 35.0%
! AGCGTGTATATGTAGTTTTC+CGG + tig0004983:1604-1623 Msa1341930:intron 35.0%
CTCATAACAGAAGGTCATAA+TGG - tig0004983:2616-2635 Msa1341930:intergenic 35.0%
CATTATGACCTTCTGTTATG+AGG + tig0004983:2614-2633 Msa1341930:CDS 35.0%
! TGATAATTAGCCTAATGGGA+AGG - tig0004983:2776-2795 Msa1341930:intergenic 35.0%
TTCAGAAAGTTACAGGGGAT+GGG + tig0004983:865-884 Msa1341930:CDS 40.0%
!! TTCAGTTTTGTAGCCGAATG+CGG + tig0004983:954-973 Msa1341930:intron 40.0%
GCTCAAACTAATGAAGGACT+TGG - tig0004983:1356-1375 Msa1341930:intergenic 40.0%
GAGGAAGCTCAAACTAATGA+AGG - tig0004983:1362-1381 Msa1341930:intergenic 40.0%
TTGAAAAACTCGCTTCGCTA+TGG - tig0004983:1384-1403 Msa1341930:intergenic 40.0%
AAAGGAATGGCTCACAACAA+GGG + tig0004983:1452-1471 Msa1341930:CDS 40.0%
TCTCAGCTCAATAGTTGAAC+CGG - tig0004983:1626-1645 Msa1341930:intergenic 40.0%
ATCAACTGTGACAGCAATGA+TGG - tig0004983:1830-1849 Msa1341930:intergenic 40.0%
! TATTTTGCTGCAGTTACTGC+AGG + tig0004983:1946-1965 Msa1341930:intron 40.0%
GCTTGCATATTTGTCTCCTA+AGG + tig0004983:2042-2061 Msa1341930:intron 40.0%
CTAAAAATGCAGCATAGAGG+CGG + tig0004983:2491-2510 Msa1341930:intron 40.0%
CAGAAGTGAAACTCTGAGTA+TGG - tig0004983:2704-2723 Msa1341930:intergenic 40.0%
CACTGTGAGAACATAAGGAG+AGG - tig0004983:803-822 Msa1341930:intergenic 45.0%
CTCTCCTTATGTTCTCACAG+TGG + tig0004983:801-820 Msa1341930:CDS 45.0%
TCCTTATGTTCTCACAGTGG+TGG + tig0004983:804-823 Msa1341930:CDS 45.0%
TCCACCACTGTGAGAACATA+AGG - tig0004983:808-827 Msa1341930:intergenic 45.0%
GTTCAGAAAGTTACAGGGGA+TGG + tig0004983:864-883 Msa1341930:CDS 45.0%
!! TCAGTTTTGTAGCCGAATGC+GGG + tig0004983:955-974 Msa1341930:intron 45.0%
GGTGAGACCGATACATCAAT+TGG - tig0004983:1294-1313 Msa1341930:intergenic 45.0%
AAAAACTCGCTTCGCTATGG+AGG - tig0004983:1381-1400 Msa1341930:intergenic 45.0%
CAAAGGAATGGCTCACAACA+AGG + tig0004983:1451-1470 Msa1341930:CDS 45.0%
AATGGCTCACAACAAGGGAA+TGG + tig0004983:1457-1476 Msa1341930:CDS 45.0%
! TCTAAAACACACCGTTGCAG+AGG - tig0004983:1856-1875 Msa1341930:intergenic 45.0%
GATTGGGCAACCTGATTTCT+GGG + tig0004983:1971-1990 Msa1341930:CDS 45.0%
ATTGGGCAACCTGATTTCTG+GGG + tig0004983:1972-1991 Msa1341930:CDS 45.0%
GGGAGGAGAATCAGAACTAT+TGG + tig0004983:1992-2011 Msa1341930:CDS 45.0%
AGGAGACAAATATGCAAGCG+TGG - tig0004983:2041-2060 Msa1341930:intergenic 45.0%
TGTGTACATACCAGAGCATG+AGG + tig0004983:2357-2376 Msa1341930:CDS 45.0%
TTCATTCCGATTGCCGAGTA+TGG + tig0004983:2530-2549 Msa1341930:CDS 45.0%
TCACTTCCATACTCGGCAAT+CGG - tig0004983:2539-2558 Msa1341930:intergenic 45.0%
! ATGAGGAATTGTATCGGCGA+AGG + tig0004983:2631-2650 Msa1341930:exon 45.0%
TCTACGCTAGTGGGAAAACA+AGG - tig0004983:2736-2755 Msa1341930:intergenic 45.0%
!! GTGAGAGTATCTACGCTAGT+GGG - tig0004983:2745-2764 Msa1341930:intergenic 45.0%
!! TGTGAGAGTATCTACGCTAG+TGG - tig0004983:2746-2765 Msa1341930:intergenic 45.0%
TTTGGTACCCGAATGTGTGA+TGG + tig0004983:2875-2894 Msa1341930:three_prime_UTR 45.0%
TTGGTACCCGAATGTGTGAT+GGG + tig0004983:2876-2895 Msa1341930:three_prime_UTR 45.0%
AGAAAGTTACAGGGGATGGG+CGG + tig0004983:868-887 Msa1341930:CDS 50.0%
ATCCAATCAGCACCCGCATT+CGG - tig0004983:970-989 Msa1341930:intergenic 50.0%
TAGAGGTAAGCGGTGACAGT+TGG + tig0004983:1412-1431 Msa1341930:intron 50.0%
AATGGCTCTTAACCAACGCG+AGG + tig0004983:1475-1494 Msa1341930:CDS 50.0%
! CATTTTCTCTCTCCTCGCGT+TGG - tig0004983:1490-1509 Msa1341930:intergenic 50.0%
!! CAGTTGATGAGCCTCTGCAA+CGG + tig0004983:1842-1861 Msa1341930:CDS 50.0%
TTTGCTGCAGTTACTGCAGG+CGG + tig0004983:1949-1968 Msa1341930:intron 50.0%
GGATTGGGCAACCTGATTTC+TGG + tig0004983:1970-1989 Msa1341930:CDS 50.0%
GATTCTCCTCCCCAGAAATC+AGG - tig0004983:1984-2003 Msa1341930:intergenic 50.0%
! TGAAGGCATACCTCATGCTC+TGG - tig0004983:2370-2389 Msa1341930:intergenic 50.0%
AAAATGCAGCATAGAGGCGG+TGG + tig0004983:2494-2513 Msa1341930:intron 50.0%
GTTCTAGCAGAAAAGCCGTG+AGG + tig0004983:2570-2589 Msa1341930:CDS 50.0%
ACCGCTGAACAATAGCCTCA+CGG - tig0004983:2588-2607 Msa1341930:intergenic 50.0%
! AGGAATTGTATCGGCGAAGG+AGG + tig0004983:2634-2653 Msa1341930:exon 50.0%
CGCGAGGAGAGAGAAAATGC+AGG + tig0004983:1491-1510 Msa1341930:CDS 55.0%
TGCAGTTACTGCAGGCGGAT+TGG + tig0004983:1954-1973 Msa1341930:intron 55.0%
! GCAGTTACTGCAGGCGGATT+GGG + tig0004983:1955-1974 Msa1341930:intron 55.0%
GCCGTGAGGCTATTGTTCAG+CGG + tig0004983:2584-2603 Msa1341930:CDS 55.0%
CGGCTACCCATCACACATTC+GGG - tig0004983:2885-2904 Msa1341930:intergenic 55.0%
GCGGCTACCCATCACACATT+CGG - tig0004983:2886-2905 Msa1341930:intergenic 55.0%
GCGGTGTCTGTTTCGTGCTC+TGG + tig0004983:887-906 Msa1341930:CDS 60.0%
!! AGCCGAATGCGGGTGCTGAT+TGG + tig0004983:965-984 Msa1341930:intron 60.0%
! GGGCAACCTGATTTCTGGGG+AGG + tig0004983:1975-1994 Msa1341930:CDS 60.0%
TGCAGCATAGAGGCGGTGGT+CGG + tig0004983:2498-2517 Msa1341930:intron 60.0%
GCAGCATAGAGGCGGTGGTC+GGG + tig0004983:2499-2518 Msa1341930:intron 65.0%
CAGCATAGAGGCGGTGGTCG+GGG + tig0004983:2500-2519 Msa1341930:intron 65.0%
AGAGGCGGTGGTCGGGGATC+TGG + tig0004983:2506-2525 Msa1341930:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0004983 gene 649 3115 649 ID=Msa1341930;Name=Msa1341930
tig0004983 mRNA 649 3115 649 ID=Msa1341930-mRNA-1;Parent=Msa1341930;Name=Msa1341930-mRNA-1;_AED=0.08;_eAED=0.08;_QI=128|1|1|1|0.83|0.71|7|453|180
tig0004983 exon 649 908 649 ID=Msa1341930-mRNA-1:exon:3397;Parent=Msa1341930-mRNA-1
tig0004983 exon 1449 1512 1449 ID=Msa1341930-mRNA-1:exon:3398;Parent=Msa1341930-mRNA-1
tig0004983 exon 1758 1863 1758 ID=Msa1341930-mRNA-1:exon:3399;Parent=Msa1341930-mRNA-1
tig0004983 exon 1959 2013 1959 ID=Msa1341930-mRNA-1:exon:3400;Parent=Msa1341930-mRNA-1
tig0004983 exon 2325 2378 2325 ID=Msa1341930-mRNA-1:exon:3401;Parent=Msa1341930-mRNA-1
tig0004983 exon 2503 3029 2503 ID=Msa1341930-mRNA-1:exon:3402;Parent=Msa1341930-mRNA-1
tig0004983 exon 3058 3115 3058 ID=Msa1341930-mRNA-1:exon:3403;Parent=Msa1341930-mRNA-1
tig0004983 five_prime_UTR 649 776 649 ID=Msa1341930-mRNA-1:five_prime_utr;Parent=Msa1341930-mRNA-1
tig0004983 CDS 777 908 777 ID=Msa1341930-mRNA-1:cds;Parent=Msa1341930-mRNA-1
tig0004983 CDS 1449 1512 1449 ID=Msa1341930-mRNA-1:cds;Parent=Msa1341930-mRNA-1
tig0004983 CDS 1758 1863 1758 ID=Msa1341930-mRNA-1:cds;Parent=Msa1341930-mRNA-1
tig0004983 CDS 1959 2013 1959 ID=Msa1341930-mRNA-1:cds;Parent=Msa1341930-mRNA-1
tig0004983 CDS 2325 2378 2325 ID=Msa1341930-mRNA-1:cds;Parent=Msa1341930-mRNA-1
tig0004983 CDS 2503 2634 2503 ID=Msa1341930-mRNA-1:cds;Parent=Msa1341930-mRNA-1
tig0004983 three_prime_UTR 2635 3029 2635 ID=Msa1341930-mRNA-1:three_prime_utr;Parent=Msa1341930-mRNA-1
tig0004983 three_prime_UTR 3058 3115 3058 ID=Msa1341930-mRNA-1:three_prime_utr;Parent=Msa1341930-mRNA-1
Gene Sequence

>Msa1341930

ATGTGTTGTGTACTTGTGTTTGGCCTCTCCTTATGTTCTCACAGTGGTGGACAGTCTGCAGCAATGAAGAAACTTGAGCGTTTTTCAGTTCAGAAAGTTACAGGGGATGGGCGGTGTCTGTTTCGTGCTCTGGTCAAAGGAATGGCTCACAACAAGGGAATGGCTCTTAACCAACGCGAGGAGAGAGAAAATGCAGATGAACTAAGAATGGCAGTCAAAGAAGCTATATGTGAAAATGTAGGAGATCGCAAGTTATATGAAGAAGCCATCATTGCTGTCACAGTTGATGAGCCTCTGCAACGTTACTGCAGGCGGATTGGGCAACCTGATTTCTGGGGAGGAGAATCAGAACTATTGGTACTGTCAAAGTTATGTAAGCAGCCAATTATTGTGTACATACCAGAGCATGAGCATAGAGGCGGTGGTCGGGGATCTGGTTTCATTCCGATTGCCGAGTATGGAAGTGAATTTAAAAAGGGTTCTAGCAGAAAAGCCGTGAGGCTATTGTTCAGCGGTAAAAACCATTATGACCTTCTGTTATGA

Protein sequence

>Msa1341930

MCCVLVFGLSLCSHSGGQSAAMKKLERFSVQKVTGDGRCLFRALVKGMAHNKGMALNQREERENADELRMAVKEAICENVGDRKLYEEAIIAVTVDEPLQRYCRRIGQPDFWGGESELLVLSKLCKQPIIVYIPEHEHRGGGRGSGFIPIAEYGSEFKKGSSRKAVRLLFSGKNHYDLLL*