Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0264400 | XP_003597357.1 | 96.615 | 384 | 12 | 1 | 1 | 384 | 1 | 383 | 0.0 | 761 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0264400 | sp|Q0WQX7|RBL1_ARATH | 62.434 | 378 | 139 | 2 | 6 | 383 | 15 | 389 | 5.91e-175 | 495 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0264400 | G7IHP5 | 96.615 | 384 | 12 | 1 | 1 | 384 | 1 | 383 | 0.0 | 761 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0049790 | Msa0264400 | 0.820017 | 8.564766e-53 | -8.615850e-47 |
Msa0081520 | Msa0264400 | 0.805763 | 1.140727e-49 | -8.615850e-47 |
Msa0120400 | Msa0264400 | 0.804801 | 1.814075e-49 | -8.615850e-47 |
Msa0144360 | Msa0264400 | 0.803610 | 3.211921e-49 | -8.615850e-47 |
Msa0223210 | Msa0264400 | 0.934694 | 2.713028e-96 | -8.615850e-47 |
Msa0225100 | Msa0264400 | 0.805217 | 1.485208e-49 | -8.615850e-47 |
Msa0225460 | Msa0264400 | 0.825786 | 3.876155e-54 | -8.615850e-47 |
Msa0225680 | Msa0264400 | 0.834247 | 3.347213e-56 | -8.615850e-47 |
Msa0225860 | Msa0264400 | 0.824651 | 7.190432e-54 | -8.615850e-47 |
Msa0264400 | Msa0277180 | 0.810654 | 1.035395e-50 | -8.615850e-47 |
Msa0264400 | Msa0287740 | 0.800190 | 1.618860e-48 | -8.615850e-47 |
Msa0264400 | Msa0297790 | 0.805797 | 1.122221e-49 | -8.615850e-47 |
Msa0264400 | Msa0298470 | 0.800038 | 1.738654e-48 | -8.615850e-47 |
Msa0264400 | Msa0300320 | 0.800248 | 1.575514e-48 | -8.615850e-47 |
Msa0264400 | Msa0300690 | 0.802469 | 5.528806e-49 | -8.615850e-47 |
Msa0264400 | Msa0302290 | 0.902760 | 6.973419e-79 | -8.615850e-47 |
Msa0264400 | Msa0305700 | 0.807100 | 5.960465e-50 | -8.615850e-47 |
Msa0264400 | Msa0330380 | 0.804669 | 1.933274e-49 | -8.615850e-47 |
Msa0264400 | Msa0339650 | 0.943249 | 1.690822e-102 | -8.615850e-47 |
Msa0264400 | Msa0428370 | 0.801643 | 8.172052e-49 | -8.615850e-47 |
Msa0264400 | Msa0475790 | 0.805418 | 1.348069e-49 | -8.615850e-47 |
Msa0264400 | Msa0484380 | 0.825926 | 3.591142e-54 | -8.615850e-47 |
Msa0264400 | Msa0534400 | 0.800142 | 1.655535e-48 | -8.615850e-47 |
Msa0264400 | Msa0574890 | 0.807918 | 3.997042e-50 | -8.615850e-47 |
Msa0264400 | Msa0580370 | 0.808721 | 2.694922e-50 | -8.615850e-47 |
Msa0264400 | Msa0586220 | 0.801144 | 1.034369e-48 | -8.615850e-47 |
Msa0264400 | Msa0626450 | 0.818720 | 1.691844e-52 | -8.615850e-47 |
Msa0264400 | Msa0626490 | 0.817253 | 3.628670e-52 | -8.615850e-47 |
Msa0264400 | Msa0664600 | 0.820086 | 8.257915e-53 | -8.615850e-47 |
Msa0264400 | Msa0670100 | 0.810863 | 9.329758e-51 | -8.615850e-47 |
Msa0264400 | Msa0733390 | 0.802447 | 5.587369e-49 | -8.615850e-47 |
Msa0264400 | Msa0795870 | 0.816898 | 4.360837e-52 | -8.615850e-47 |
Msa0264400 | Msa0833650 | 0.813933 | 1.991772e-51 | -8.615850e-47 |
Msa0264400 | Msa0868440 | 0.805590 | 1.240332e-49 | -8.615850e-47 |
Msa0264400 | Msa0903070 | 0.803311 | 3.703544e-49 | -8.615850e-47 |
Msa0264400 | Msa0967380 | 0.828278 | 9.825375e-55 | -8.615850e-47 |
Msa0264400 | Msa0967870 | 0.800906 | 1.156883e-48 | -8.615850e-47 |
Msa0264400 | Msa1019430 | 0.821390 | 4.141374e-53 | -8.615850e-47 |
Msa0264400 | Msa1019470 | 0.836950 | 6.929122e-57 | -8.615850e-47 |
Msa0264400 | Msa1021210 | 0.801460 | 8.909003e-49 | -8.615850e-47 |
Msa0264400 | Msa1041670 | 0.804145 | 2.485822e-49 | -8.615850e-47 |
Msa0264400 | Msa1044470 | 0.806501 | 7.979486e-50 | -8.615850e-47 |
Msa0264400 | Msa1059960 | 0.802051 | 6.740714e-49 | -8.615850e-47 |
Msa0264400 | Msa1132840 | 0.806893 | 6.594536e-50 | -8.615850e-47 |
Msa0264400 | Msa1156260 | 0.801087 | 1.062417e-48 | -8.615850e-47 |
Msa0264400 | Msa1166560 | 0.800444 | 1.437444e-48 | -8.615850e-47 |
Msa0264400 | Msa1198250 | 0.803224 | 3.859629e-49 | -8.615850e-47 |
Msa0264400 | Msa1208160 | 0.819510 | 1.118152e-52 | -8.615850e-47 |
Msa0264400 | Msa1208430 | 0.825540 | 4.433507e-54 | -8.615850e-47 |
Msa0264400 | Msa1267900 | 0.814290 | 1.661400e-51 | -8.615850e-47 |
Msa0264400 | Msa1298370 | 0.820518 | 6.574711e-53 | -8.615850e-47 |
Msa0264400 | Msa1330420 | 0.815691 | 8.119104e-52 | -8.615850e-47 |
Msa0264400 | Msa1356830 | 0.803623 | 3.191663e-49 | -8.615850e-47 |
Msa0264400 | Msa1427200 | 0.940101 | 4.142369e-100 | -8.615850e-47 |
Msa0264400 | Msa1440880 | 0.801011 | 1.101034e-48 | -8.615850e-47 |
Msa0264400 | Msa1440960 | 0.824707 | 6.975128e-54 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0264400 | MtrunA17_Chr2g0328271 | 96.615 | 384 | 12 | 1 | 1 | 384 | 1 | 383 | 0.0 | 761 |
Msa0264400 | MtrunA17_Chr4g0009841 | 62.824 | 347 | 126 | 2 | 37 | 383 | 34 | 377 | 1.03e-168 | 476 |
Msa0264400 | MtrunA17_Chr7g0238701 | 59.504 | 363 | 138 | 4 | 25 | 383 | 6 | 363 | 3.52e-150 | 429 |
Msa0264400 | MtrunA17_Chr6g0472501 | 63.226 | 310 | 106 | 3 | 31 | 338 | 23 | 326 | 7.12e-127 | 368 |
Msa0264400 | MtrunA17_Chr1g0203681 | 53.191 | 329 | 135 | 3 | 16 | 339 | 5 | 319 | 5.48e-113 | 332 |
Msa0264400 | MtrunA17_Chr2g0332941 | 55.636 | 275 | 114 | 3 | 44 | 312 | 30 | 302 | 5.18e-99 | 296 |
Msa0264400 | MtrunA17_Chr3g0115331 | 39.785 | 372 | 208 | 4 | 23 | 382 | 12 | 379 | 1.02e-86 | 267 |
Msa0264400 | MtrunA17_Chr2g0322601 | 39.500 | 200 | 94 | 5 | 142 | 340 | 1 | 174 | 9.03e-33 | 121 |
Msa0264400 | MtrunA17_Chr2g0322611 | 48.913 | 92 | 47 | 0 | 99 | 190 | 2 | 93 | 3.50e-23 | 92.8 |
Msa0264400 | MtrunA17_Chr8g0392201 | 38.542 | 96 | 43 | 2 | 225 | 320 | 28 | 107 | 1.38e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0264400 | AT2G29050.1 | 62.434 | 378 | 139 | 2 | 6 | 383 | 15 | 389 | 6.00e-176 | 495 |
Msa0264400 | AT3G53780.2 | 59.673 | 367 | 139 | 3 | 17 | 383 | 37 | 394 | 9.86e-154 | 439 |
Msa0264400 | AT1G63120.1 | 63.946 | 294 | 98 | 2 | 44 | 335 | 30 | 317 | 1.06e-128 | 372 |
Msa0264400 | AT2G29050.2 | 58.104 | 327 | 106 | 3 | 6 | 304 | 15 | 338 | 4.50e-126 | 367 |
Msa0264400 | AT5G07250.1 | 59.467 | 338 | 123 | 3 | 4 | 337 | 18 | 345 | 3.10e-125 | 365 |
Msa0264400 | AT3G53780.1 | 61.957 | 276 | 99 | 1 | 108 | 383 | 1 | 270 | 2.52e-124 | 360 |
Msa0264400 | AT1G12750.4 | 56.066 | 305 | 129 | 2 | 33 | 335 | 6 | 307 | 6.32e-122 | 355 |
Msa0264400 | AT1G12750.7 | 56.066 | 305 | 129 | 2 | 33 | 335 | 6 | 307 | 6.32e-122 | 355 |
Msa0264400 | AT1G12750.6 | 56.066 | 305 | 129 | 2 | 33 | 335 | 6 | 307 | 6.32e-122 | 355 |
Msa0264400 | AT1G12750.3 | 56.066 | 305 | 129 | 2 | 33 | 335 | 6 | 307 | 6.32e-122 | 355 |
Msa0264400 | AT1G12750.1 | 56.066 | 305 | 129 | 2 | 33 | 335 | 6 | 307 | 6.32e-122 | 355 |
Msa0264400 | AT3G53780.3 | 60.351 | 285 | 104 | 3 | 17 | 301 | 37 | 312 | 1.72e-114 | 336 |
Msa0264400 | AT1G77860.2 | 44.083 | 338 | 184 | 4 | 48 | 382 | 49 | 384 | 9.21e-97 | 293 |
Msa0264400 | AT1G52580.1 | 54.027 | 298 | 127 | 7 | 20 | 311 | 3 | 296 | 1.84e-96 | 290 |
Msa0264400 | AT4G23070.1 | 55.326 | 291 | 125 | 2 | 44 | 334 | 28 | 313 | 1.66e-93 | 283 |
Msa0264400 | AT5G07250.2 | 49.408 | 338 | 110 | 4 | 4 | 337 | 18 | 298 | 1.13e-88 | 270 |
Msa0264400 | AT1G77860.1 | 45.151 | 299 | 159 | 4 | 48 | 343 | 49 | 345 | 1.10e-84 | 261 |
Msa0264400 | AT1G12750.5 | 60.326 | 184 | 71 | 1 | 33 | 214 | 6 | 189 | 1.89e-76 | 235 |
Msa0264400 | AT1G12750.2 | 59.893 | 187 | 73 | 1 | 33 | 217 | 6 | 192 | 4.55e-76 | 234 |
Find 113 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTCAGGGTCTTGTTGGATTC+TGG | 0.167687 | 2_2:-64370524 | Msa0264400:five_prime_UTR |
ATTCGGCTTGAACAAGAATT+TGG | 0.175005 | 2_2:-64369008 | Msa0264400:CDS |
AAATGCTGTCGAATATTATT+AGG | 0.205490 | 2_2:-64367402 | Msa0264400:three_prime_UTR |
TGATTCGTCCTCAGTTTAAA+TGG | 0.238851 | 2_2:-64368363 | Msa0264400:CDS |
CTCTATGTGATATCTGGTTT+TGG | 0.246364 | 2_2:-64368760 | Msa0264400:CDS |
GGATTTCTCTATGTGATATC+TGG | 0.262897 | 2_2:-64368766 | Msa0264400:CDS |
TCTCAGAGCTCTTCATTAAT+TGG | 0.278075 | 2_2:-64368651 | Msa0264400:CDS |
AATGGAATGGAAGATATATT+TGG | 0.280921 | 2_2:-64367456 | Msa0264400:three_prime_UTR |
TCTTTCCTATTACTCATTGC+AGG | 0.286895 | 2_2:-64368250 | Msa0264400:CDS |
CTTACCCTGCAATGAGTAAT+AGG | 0.292148 | 2_2:+64368245 | None:intergenic |
TTCGCTCATCTAGGAGGATT+TGG | 0.297054 | 2_2:-64368415 | Msa0264400:CDS |
GGCGCCTTGTCTCTTGTATA+TGG | 0.304879 | 2_2:-64369088 | Msa0264400:CDS |
CTTGAACAAGAATTTGGATT+TGG | 0.310501 | 2_2:-64369002 | Msa0264400:intron |
ATCTGAAATCTTTGTTCAAA+AGG | 0.315789 | 2_2:-64370371 | Msa0264400:five_prime_UTR |
CATCTAGGAGGATTTGGTTC+TGG | 0.319719 | 2_2:-64368409 | Msa0264400:CDS |
AACAAATTCCTAACTTTGTC+AGG | 0.325137 | 2_2:-64370541 | Msa0264400:five_prime_UTR |
TCACTCGTGATCGTGATTTC+AGG | 0.355861 | 2_2:-64370226 | Msa0264400:CDS |
TTGTGTATATGATTCATTCT+TGG | 0.360552 | 2_2:-64367638 | Msa0264400:three_prime_UTR |
TAACTTTGTCAGGGTCTTGT+TGG | 0.364641 | 2_2:-64370531 | Msa0264400:five_prime_UTR |
CTTAAAGAAAACCCTCTCTT+TGG | 0.366436 | 2_2:-64370050 | Msa0264400:CDS |
TGGCACCACCGTTGAGGTTA+AGG | 0.367443 | 2_2:-64370297 | Msa0264400:CDS |
GGCATCTCAGTTGGTGCATC+TGG | 0.372637 | 2_2:-64368703 | Msa0264400:CDS |
TTTGGTTCTGGCTTTCTGCT+TGG | 0.373387 | 2_2:-64368397 | Msa0264400:CDS |
CTTGTATATGGTTGCATGGT+GGG | 0.379600 | 2_2:-64369076 | Msa0264400:CDS |
TGTCCTTTCGCAGTTAGAAT+TGG | 0.379685 | 2_2:-64368787 | Msa0264400:intron |
TTGGACGATATATGCCAATA+AGG | 0.382911 | 2_2:-64368632 | Msa0264400:intron |
GGTGCATCTGGTGCATTGTT+TGG | 0.382955 | 2_2:-64368691 | Msa0264400:CDS |
AGCCAACAACAGTCTAAATC+TGG | 0.385356 | 2_2:-64368337 | Msa0264400:CDS |
ACCTTATCAATATGTGTTGT+GGG | 0.394616 | 2_2:-64368278 | Msa0264400:CDS |
ATCCAGATTTAGACTGTTGT+TGG | 0.400472 | 2_2:+64368335 | None:intergenic |
AACAAGACCCTGACAAAGTT+AGG | 0.404982 | 2_2:+64370533 | None:intergenic |
AATGCTGTCGAATATTATTA+GGG | 0.406993 | 2_2:-64367401 | Msa0264400:three_prime_UTR |
GTTGTGTTCCTACCTCAAAA+TGG | 0.409054 | 2_2:-64367998 | Msa0264400:CDS |
TCTATGCAGACAACGGAATT+CGG | 0.409614 | 2_2:-64367818 | Msa0264400:intron |
GAAATGGGTTTGAATCAGTT+AGG | 0.421296 | 2_2:+64370457 | None:intergenic |
GTTGTAATAAATTTAGCTGT+TGG | 0.441288 | 2_2:-64368460 | Msa0264400:CDS |
TTGTTCTCAGTCGGCAATGA+TGG | 0.441972 | 2_2:-64367598 | Msa0264400:three_prime_UTR |
GTCTGCGTTATTCATACAAA+CGG | 0.445629 | 2_2:-64368725 | Msa0264400:CDS |
TCTGAAATCTTTGTTCAAAA+GGG | 0.452645 | 2_2:-64370370 | Msa0264400:five_prime_UTR |
GGGTCTTGTTGGATTCTGGC+TGG | 0.453364 | 2_2:-64370520 | Msa0264400:five_prime_UTR |
TGTCCTGAGAATGCATTTCA+TGG | 0.455723 | 2_2:-64370116 | Msa0264400:CDS |
TACCTTATCAATATGTGTTG+TGG | 0.455869 | 2_2:-64368279 | Msa0264400:CDS |
AGTAATAAACTTATGATGGC+TGG | 0.458120 | 2_2:+64367563 | None:intergenic |
GGTGCATTGTTTGGCTTACT+CGG | 0.462230 | 2_2:-64368682 | Msa0264400:CDS |
AAAGAGAATCTTCCAAGAAA+AGG | 0.470067 | 2_2:+64370080 | None:intergenic |
TTTCAGGCTCTTTAAGCAAT+GGG | 0.470163 | 2_2:-64370210 | Msa0264400:CDS |
GTTGACAATTTCGCTCATCT+AGG | 0.472592 | 2_2:-64368424 | Msa0264400:CDS |
ACACATGCAAAATTTCTTGA+AGG | 0.474975 | 2_2:-64367677 | Msa0264400:three_prime_UTR |
GTCTCTTGTATATGGTTGCA+TGG | 0.482616 | 2_2:-64369080 | Msa0264400:CDS |
TAATAGTAATAAACTTATGA+TGG | 0.486847 | 2_2:+64367559 | None:intergenic |
ATATTATTAGGGATATGTTA+AGG | 0.495652 | 2_2:-64367390 | Msa0264400:three_prime_UTR |
TCTTTAAGCAATGGGTTCCA+TGG | 0.504864 | 2_2:-64370202 | Msa0264400:CDS |
ACCCACAACACATATTGATA+AGG | 0.507027 | 2_2:+64368277 | None:intergenic |
TACCTCAAAATGGAGTTGTC+AGG | 0.507679 | 2_2:-64367988 | Msa0264400:CDS |
GGGATGGTTCTACTCTTTCG+AGG | 0.511587 | 2_2:-64368062 | Msa0264400:CDS |
ATTTCAGGCTCTTTAAGCAA+TGG | 0.516293 | 2_2:-64370211 | Msa0264400:CDS |
CATTGTTTGGCTTACTCGGA+GGG | 0.524954 | 2_2:-64368678 | Msa0264400:CDS |
ACGTTGGCAAACACAAAAGT+TGG | 0.526318 | 2_2:+64370173 | None:intergenic |
CTTTGTTCGCAACTTTGCCA+TGG | 0.528366 | 2_2:-64367710 | Msa0264400:CDS |
TTCAAAATCATCTATAATCA+CGG | 0.533216 | 2_2:-64370437 | Msa0264400:five_prime_UTR |
CTTTCCTATTACTCATTGCA+GGG | 0.535119 | 2_2:-64368249 | Msa0264400:intron |
GTACCATGAAATGCATTCTC+AGG | 0.536653 | 2_2:+64370113 | None:intergenic |
TCAACATGTTGGCAAGTACA+TGG | 0.537008 | 2_2:+64369048 | None:intergenic |
AAATCACGATCACGAGTGAC+GGG | 0.541550 | 2_2:+64370230 | None:intergenic |
TGACAGATTCATTACTGGGA+TGG | 0.543513 | 2_2:-64368078 | Msa0264400:intron |
TAAACTGAGGACGAATCAAA+AGG | 0.544513 | 2_2:+64368368 | None:intergenic |
TGCTCTAGAAGTAGATAAAG+TGG | 0.545530 | 2_2:-64369129 | Msa0264400:CDS |
AGAAATTCGTTGTTCTCAGT+CGG | 0.545619 | 2_2:-64367607 | Msa0264400:three_prime_UTR |
CACATGCAAAATTTCTTGAA+GGG | 0.545781 | 2_2:-64367676 | Msa0264400:three_prime_UTR |
AAAACTCACGTAAAGGAAGA+AGG | 0.547703 | 2_2:+64370026 | None:intergenic |
GACAATTTCGCTCATCTAGG+AGG | 0.549429 | 2_2:-64368421 | Msa0264400:CDS |
TCTGCGTTATTCATACAAAC+GGG | 0.553724 | 2_2:-64368724 | Msa0264400:CDS |
AAGAGAGCAAAGGAATGGAA+TGG | 0.554489 | 2_2:-64367469 | Msa0264400:three_prime_UTR |
ACAAAAGTTGGAACAAGCCA+TGG | 0.556908 | 2_2:+64370185 | None:intergenic |
ATACAAACGGGCATCTCAGT+TGG | 0.569101 | 2_2:-64368712 | Msa0264400:CDS |
GAAATCACGATCACGAGTGA+CGG | 0.572889 | 2_2:+64370229 | None:intergenic |
ATCAAAAGAGAGCAAAGGAA+TGG | 0.574326 | 2_2:-64367474 | Msa0264400:three_prime_UTR |
TCAACGGTGGTGCCACCATG+TGG | 0.575383 | 2_2:+64370305 | None:intergenic |
CATGTGTATCTATCTATCCA+TGG | 0.577916 | 2_2:+64367693 | None:intergenic |
AAATCATAATCATGAGTGGA+GGG | 0.582372 | 2_2:-64370334 | Msa0264400:exon |
TTGTATATGGTTGCATGGTG+GGG | 0.585338 | 2_2:-64369075 | Msa0264400:CDS |
AGGAAGAAGGACCAAAGAGA+GGG | 0.589526 | 2_2:+64370039 | None:intergenic |
AAACAATTCTCCACAGACAA+AGG | 0.590975 | 2_2:-64370490 | Msa0264400:five_prime_UTR |
ACAAATTCCTAACTTTGTCA+GGG | 0.594817 | 2_2:-64370540 | Msa0264400:five_prime_UTR |
TGGTTCATGAACACGAAGGT+TGG | 0.597343 | 2_2:-64369109 | Msa0264400:CDS |
AACAATGAAAATAATAACGT+TGG | 0.597447 | 2_2:+64370157 | None:intergenic |
GGAACAAAGCATTTATTGTG+AGG | 0.597670 | 2_2:-64367967 | Msa0264400:intron |
TTAAGGTTCATCCTCGCCGT+GGG | 0.597978 | 2_2:-64370280 | Msa0264400:CDS |
TCTTGTATATGGTTGCATGG+TGG | 0.604832 | 2_2:-64369077 | Msa0264400:CDS |
GCATTGTTTGGCTTACTCGG+AGG | 0.606501 | 2_2:-64368679 | Msa0264400:CDS |
GTTAAGGTTCATCCTCGCCG+TGG | 0.606777 | 2_2:-64370281 | Msa0264400:CDS |
CGAAATTGTCAACATGTGGA+AGG | 0.611940 | 2_2:+64368434 | None:intergenic |
TGAGCGAAATTGTCAACATG+TGG | 0.615330 | 2_2:+64368430 | None:intergenic |
CAACGGTGGTGCCACCATGT+GGG | 0.618108 | 2_2:+64370306 | None:intergenic |
AACATCACATGCATGAGCAA+TGG | 0.619993 | 2_2:-64367785 | Msa0264400:CDS |
ACATGGTGGCACCACCGTTG+AGG | 0.621441 | 2_2:-64370303 | Msa0264400:CDS |
AAGGAAGAAGGACCAAAGAG+AGG | 0.633246 | 2_2:+64370038 | None:intergenic |
TGGCTTATCCATTTAAACTG+AGG | 0.633333 | 2_2:+64368355 | None:intergenic |
AAAATCATAATCATGAGTGG+AGG | 0.633390 | 2_2:-64370335 | Msa0264400:exon |
CTATTATCAAAAGAGAGCAA+AGG | 0.634615 | 2_2:-64367479 | Msa0264400:three_prime_UTR |
TCACGATCACGAGTGACGGG+AGG | 0.634822 | 2_2:+64370233 | None:intergenic |
ACGACGAAGACAGAGACCCA+CGG | 0.637234 | 2_2:+64370264 | None:intergenic |
ACTTGAATGAACGTTGCTCG+TGG | 0.663668 | 2_2:-64368034 | Msa0264400:CDS |
AGGATGAACCTTAACCTCAA+CGG | 0.671763 | 2_2:+64370289 | None:intergenic |
TCATAATCATGAGTGGAGGG+AGG | 0.674267 | 2_2:-64370331 | Msa0264400:exon |
GAAGAGCTAGTATTCGACAG+AGG | 0.682346 | 2_2:+64367746 | None:intergenic |
GAAGACAGAGACCCACGGCG+AGG | 0.685392 | 2_2:+64370269 | None:intergenic |
AGTGGAGGGAGGAACCCACA+TGG | 0.690830 | 2_2:-64370320 | Msa0264400:CDS |
GCAACCATATACAAGAGACA+AGG | 0.709780 | 2_2:+64369084 | None:intergenic |
AAAATCATCTATAATCACGG+AGG | 0.711965 | 2_2:-64370434 | Msa0264400:five_prime_UTR |
ATGAACCTTAACCTCAACGG+TGG | 0.726735 | 2_2:+64370292 | None:intergenic |
GGAGGGAGGAACCCACATGG+TGG | 0.736064 | 2_2:-64370317 | Msa0264400:CDS |
AAAGTGGTTCATGAACACGA+AGG | 0.793505 | 2_2:-64369113 | Msa0264400:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGATTATGATTTTTTTTTTT+TGG | + | chr2_2:64367629-64367648 | None:intergenic | 10.0% |
!!! | ATTATAGATGATTTTGAAAT+GGG | + | chr2_2:64367532-64367551 | None:intergenic | 15.0% |
!! | AATGATATAAATACAGATAA+TGG | + | chr2_2:64369062-64369081 | None:intergenic | 15.0% |
!! | AAGACAATAAATTATTTATC+AGG | + | chr2_2:64369403-64369422 | None:intergenic | 15.0% |
!! | TAAATAATTTATTGTCTTTG+CGG | - | chr2_2:64369405-64369424 | Msa0264400:intron | 15.0% |
!! | ATATTACCTTTAATATTCTT+AGG | - | chr2_2:64369777-64369796 | Msa0264400:intron | 15.0% |
!!! | GTTTTTTCTTTTATCTAAAT+TGG | - | chr2_2:64370116-64370135 | Msa0264400:CDS | 15.0% |
!! | TAATAGTAATAAACTTATGA+TGG | + | chr2_2:64370415-64370434 | None:intergenic | 15.0% |
!!! | GATTATAGATGATTTTGAAA+TGG | + | chr2_2:64367533-64367552 | None:intergenic | 20.0% |
!! | TTCAAAATCATCTATAATCA+CGG | - | chr2_2:64367534-64367553 | Msa0264400:three_prime_UTR | 20.0% |
!! | AAAAAAATCATAATCATGAG+TGG | - | chr2_2:64367633-64367652 | Msa0264400:three_prime_UTR | 20.0% |
!! | AACAATGAAAATAATAACGT+TGG | + | chr2_2:64367817-64367836 | None:intergenic | 20.0% |
!! | TACATTAATCAAGTTATGAT+TGG | - | chr2_2:64368049-64368068 | Msa0264400:CDS | 20.0% |
!! | ATGAACATGTGTTTATAAAT+GGG | - | chr2_2:64368392-64368411 | Msa0264400:CDS | 20.0% |
!!! | TTGTTTTTACATAAATGTTC+TGG | - | chr2_2:64369080-64369099 | Msa0264400:CDS | 20.0% |
!!! | AGTAGTATTTAATCTAAAGT+TGG | - | chr2_2:64369863-64369882 | Msa0264400:intron | 20.0% |
!!! | AATTTTTTTTCCTTTGTCTG+TGG | + | chr2_2:64367494-64367513 | None:intergenic | 25.0% |
!! | ATCTGAAATCTTTGTTCAAA+AGG | - | chr2_2:64367600-64367619 | Msa0264400:three_prime_UTR | 25.0% |
!! | TCTGAAATCTTTGTTCAAAA+GGG | - | chr2_2:64367601-64367620 | Msa0264400:three_prime_UTR | 25.0% |
! | TTAATCAAGTTATGATTGGT+TGG | - | chr2_2:64368053-64368072 | Msa0264400:CDS | 25.0% |
! | CATGAACATGTGTTTATAAA+TGG | - | chr2_2:64368391-64368410 | Msa0264400:CDS | 25.0% |
! | TGAACATGTGTTTATAAATG+GGG | - | chr2_2:64368393-64368412 | Msa0264400:CDS | 25.0% |
! | TTCATAGATTACATTCTCTA+TGG | - | chr2_2:64368634-64368653 | Msa0264400:CDS | 25.0% |
! | GCTATTGCAAATACATAATT+TGG | + | chr2_2:64368713-64368732 | None:intergenic | 25.0% |
! | TATGTATTTGCAATAGCTAA+TGG | - | chr2_2:64368716-64368735 | Msa0264400:CDS | 25.0% |
!! | ACAGTACCAATCTTAATTTT+AGG | - | chr2_2:64368739-64368758 | Msa0264400:CDS | 25.0% |
! | TATCTGCCTAAAATTAAGAT+TGG | + | chr2_2:64368748-64368767 | None:intergenic | 25.0% |
!! | ATGTTGAGTCTTCTTTTTAT+TGG | - | chr2_2:64368939-64368958 | Msa0264400:intron | 25.0% |
!! | GTCTTCTTTTTATTGGAATT+CGG | - | chr2_2:64368946-64368965 | Msa0264400:intron | 25.0% |
!!! | TTTTAGTTCATTCACCTTAT+TGG | + | chr2_2:64369356-64369375 | None:intergenic | 25.0% |
! | CAAAATGGAAAGAAATAGAA+TGG | + | chr2_2:64369443-64369462 | None:intergenic | 25.0% |
! | GTTGTAATAAATTTAGCTGT+TGG | - | chr2_2:64369511-64369530 | Msa0264400:intron | 25.0% |
!!! | AATTTTGACAGATTCATTAC+TGG | - | chr2_2:64369888-64369907 | Msa0264400:intron | 25.0% |
!!! | ATTTTGACAGATTCATTACT+GGG | - | chr2_2:64369889-64369908 | Msa0264400:intron | 25.0% |
! | GAACTAGAAAATAGAATTGA+TGG | + | chr2_2:64370055-64370074 | None:intergenic | 25.0% |
! | TTGTGTATATGATTCATTCT+TGG | - | chr2_2:64370333-64370352 | Msa0264400:exon | 25.0% |
! | AATGGAATGGAAGATATATT+TGG | - | chr2_2:64370515-64370534 | Msa0264400:five_prime_UTR | 25.0% |
! | AAATGCTGTCGAATATTATT+AGG | - | chr2_2:64370569-64370588 | Msa0264400:five_prime_UTR | 25.0% |
! | AATGCTGTCGAATATTATTA+GGG | - | chr2_2:64370570-64370589 | Msa0264400:five_prime_UTR | 25.0% |
AACAAATTCCTAACTTTGTC+AGG | - | chr2_2:64367430-64367449 | Msa0264400:three_prime_UTR | 30.0% | |
ACAAATTCCTAACTTTGTCA+GGG | - | chr2_2:64367431-64367450 | Msa0264400:three_prime_UTR | 30.0% | |
AAAATCATCTATAATCACGG+AGG | - | chr2_2:64367537-64367556 | Msa0264400:three_prime_UTR | 30.0% | |
AAAATCATAATCATGAGTGG+AGG | - | chr2_2:64367636-64367655 | Msa0264400:three_prime_UTR | 30.0% | |
AAATCATAATCATGAGTGGA+GGG | - | chr2_2:64367637-64367656 | Msa0264400:three_prime_UTR | 30.0% | |
AAAGAGAATCTTCCAAGAAA+AGG | + | chr2_2:64367894-64367913 | None:intergenic | 30.0% | |
GAAAAAGAAAACTCACGTAA+AGG | + | chr2_2:64367955-64367974 | None:intergenic | 30.0% | |
TGAGAATGAGTTTATTAGTG+TGG | - | chr2_2:64368174-64368193 | Msa0264400:intron | 30.0% | |
! | ACACTTTAGATGTCTAAGAT+TGG | - | chr2_2:64368327-64368346 | Msa0264400:CDS | 30.0% |
! | CACTTTAGATGTCTAAGATT+GGG | - | chr2_2:64368328-64368347 | Msa0264400:CDS | 30.0% |
! | ACTTTAGATGTCTAAGATTG+GGG | - | chr2_2:64368329-64368348 | Msa0264400:CDS | 30.0% |
GAACATGTGTTTATAAATGG+GGG | - | chr2_2:64368394-64368413 | Msa0264400:CDS | 30.0% | |
AACATGTGTTTATAAATGGG+GGG | - | chr2_2:64368395-64368414 | Msa0264400:CDS | 30.0% | |
!! | AGTTAAATTGATTCGAGCTA+AGG | - | chr2_2:64368424-64368443 | Msa0264400:CDS | 30.0% |
!! | GTTAAATTGATTCGAGCTAA+GGG | - | chr2_2:64368425-64368444 | Msa0264400:CDS | 30.0% |
TTAATATTTACTCCTTCGTC+CGG | + | chr2_2:64368480-64368499 | None:intergenic | 30.0% | |
AACAAAAACGTGTGTTTGTA+AGG | - | chr2_2:64368534-64368553 | Msa0264400:intron | 30.0% | |
AAAAACCTAATAGATGTGTG+AGG | - | chr2_2:64368575-64368594 | Msa0264400:intron | 30.0% | |
AAAACCTAATAGATGTGTGA+GGG | - | chr2_2:64368576-64368595 | Msa0264400:intron | 30.0% | |
GAATGTAATCTATGAATCAC+CGG | + | chr2_2:64368630-64368649 | None:intergenic | 30.0% | |
! | TTTTAGGCAGATATATCTCT+TGG | - | chr2_2:64368755-64368774 | Msa0264400:CDS | 30.0% |
! | ATTTTCAGATTACAGGAGAT+GGG | - | chr2_2:64368819-64368838 | Msa0264400:intron | 30.0% |
AAAAAGAAGACTCAACATGT+TGG | + | chr2_2:64368937-64368956 | None:intergenic | 30.0% | |
CTTGAACAAGAATTTGGATT+TGG | - | chr2_2:64368969-64368988 | Msa0264400:intron | 30.0% | |
! | ACAAGAATTTGGATTTGGTA+TGG | - | chr2_2:64368974-64368993 | Msa0264400:intron | 30.0% |
!! | TACAGATAATGGAATACTGT+TGG | + | chr2_2:64369051-64369070 | None:intergenic | 30.0% |
GGAAAGAAATAGAATGGTTT+AGG | + | chr2_2:64369437-64369456 | None:intergenic | 30.0% | |
CAAAACATCATGAGACAAAA+TGG | + | chr2_2:64369458-64369477 | None:intergenic | 30.0% | |
TACCTTATCAATATGTGTTG+TGG | - | chr2_2:64369692-64369711 | Msa0264400:intron | 30.0% | |
ACCTTATCAATATGTGTTGT+GGG | - | chr2_2:64369693-64369712 | Msa0264400:intron | 30.0% | |
CCAAGTCCTAAGAATATTAA+AGG | + | chr2_2:64369786-64369805 | None:intergenic | 30.0% | |
CCTTTAATATTCTTAGGACT+TGG | - | chr2_2:64369783-64369802 | Msa0264400:intron | 30.0% | |
ACAATATTCTATGCAGACAA+CGG | - | chr2_2:64370146-64370165 | Msa0264400:CDS | 30.0% | |
ACACATGCAAAATTTCTTGA+AGG | - | chr2_2:64370294-64370313 | Msa0264400:CDS | 30.0% | |
CACATGCAAAATTTCTTGAA+GGG | - | chr2_2:64370295-64370314 | Msa0264400:CDS | 30.0% | |
AGTAATAAACTTATGATGGC+TGG | + | chr2_2:64370411-64370430 | None:intergenic | 30.0% | |
CTATTATCAAAAGAGAGCAA+AGG | - | chr2_2:64370492-64370511 | Msa0264400:five_prime_UTR | 30.0% | |
AAACAATTCTCCACAGACAA+AGG | - | chr2_2:64367481-64367500 | Msa0264400:three_prime_UTR | 35.0% | |
! | GAAATGGGTTTGAATCAGTT+AGG | + | chr2_2:64367517-64367536 | None:intergenic | 35.0% |
ATTTCAGGCTCTTTAAGCAA+TGG | - | chr2_2:64367760-64367779 | Msa0264400:CDS | 35.0% | |
TTTCAGGCTCTTTAAGCAAT+GGG | - | chr2_2:64367761-64367780 | Msa0264400:CDS | 35.0% | |
! | AAGAGAGGGTTTTCTTTAAG+TGG | + | chr2_2:64367921-64367940 | None:intergenic | 35.0% |
CTTAAAGAAAACCCTCTCTT+TGG | - | chr2_2:64367921-64367940 | Msa0264400:intron | 35.0% | |
AAAACTCACGTAAAGGAAGA+AGG | + | chr2_2:64367948-64367967 | None:intergenic | 35.0% | |
! | CTTTAGATGTCTAAGATTGG+GGG | - | chr2_2:64368330-64368349 | Msa0264400:CDS | 35.0% |
TAATATTTACTCCTTCGTCC+GGG | + | chr2_2:64368479-64368498 | None:intergenic | 35.0% | |
! | TACTCGCATTTTCAGATTAC+AGG | - | chr2_2:64368812-64368831 | Msa0264400:intron | 35.0% |
! | CATTTTCAGATTACAGGAGA+TGG | - | chr2_2:64368818-64368837 | Msa0264400:intron | 35.0% |
!! | TGCTCTAGAAGTAGATAAAG+TGG | - | chr2_2:64368842-64368861 | Msa0264400:intron | 35.0% |
! | ATTCGGCTTGAACAAGAATT+TGG | - | chr2_2:64368963-64368982 | Msa0264400:intron | 35.0% |
! | ATTTGGATTTGGTATGGTTC+TGG | - | chr2_2:64368980-64368999 | Msa0264400:intron | 35.0% |
CGATATACTTGAACAATGCA+AGG | + | chr2_2:64369013-64369032 | None:intergenic | 35.0% | |
!! | GATAATGGAATACTGTTGGT+CGG | + | chr2_2:64369047-64369066 | None:intergenic | 35.0% |
AATCCAATTCTAACTGCGAA+AGG | + | chr2_2:64369190-64369209 | None:intergenic | 35.0% | |
GGATTTCTCTATGTGATATC+TGG | - | chr2_2:64369205-64369224 | Msa0264400:intron | 35.0% | |
!! | CTCTATGTGATATCTGGTTT+TGG | - | chr2_2:64369211-64369230 | Msa0264400:intron | 35.0% |
!!! | TATGTGATATCTGGTTTTGG+AGG | - | chr2_2:64369214-64369233 | Msa0264400:intron | 35.0% |
!!! | ATGTGATATCTGGTTTTGGA+GGG | - | chr2_2:64369215-64369234 | Msa0264400:intron | 35.0% |
GTCTGCGTTATTCATACAAA+CGG | - | chr2_2:64369246-64369265 | Msa0264400:intron | 35.0% | |
TCTGCGTTATTCATACAAAC+GGG | - | chr2_2:64369247-64369266 | Msa0264400:intron | 35.0% | |
TCTCAGAGCTCTTCATTAAT+TGG | - | chr2_2:64369320-64369339 | Msa0264400:intron | 35.0% | |
TTGGACGATATATGCCAATA+AGG | - | chr2_2:64369339-64369358 | Msa0264400:intron | 35.0% | |
TAAACTGAGGACGAATCAAA+AGG | + | chr2_2:64369606-64369625 | None:intergenic | 35.0% | |
TGATTCGTCCTCAGTTTAAA+TGG | - | chr2_2:64369608-64369627 | Msa0264400:intron | 35.0% | |
TGGCTTATCCATTTAAACTG+AGG | + | chr2_2:64369619-64369638 | None:intergenic | 35.0% | |
ATCCAGATTTAGACTGTTGT+TGG | + | chr2_2:64369639-64369658 | None:intergenic | 35.0% | |
ACCCACAACACATATTGATA+AGG | + | chr2_2:64369697-64369716 | None:intergenic | 35.0% | |
TCTTTCCTATTACTCATTGC+AGG | - | chr2_2:64369721-64369740 | Msa0264400:intron | 35.0% | |
CTTTCCTATTACTCATTGCA+GGG | - | chr2_2:64369722-64369741 | Msa0264400:intron | 35.0% | |
! | GGAACAAAGCATTTATTGTG+AGG | - | chr2_2:64370004-64370023 | Msa0264400:intron | 35.0% |
CATGTGTATCTATCTATCCA+TGG | + | chr2_2:64370281-64370300 | None:intergenic | 35.0% | |
AGAAATTCGTTGTTCTCAGT+CGG | - | chr2_2:64370364-64370383 | Msa0264400:five_prime_UTR | 35.0% | |
ATCAAAAGAGAGCAAAGGAA+TGG | - | chr2_2:64370497-64370516 | Msa0264400:five_prime_UTR | 35.0% | |
AACAAGACCCTGACAAAGTT+AGG | + | chr2_2:64367441-64367460 | None:intergenic | 40.0% | |
! | TAACTTTGTCAGGGTCTTGT+TGG | - | chr2_2:64367440-64367459 | Msa0264400:three_prime_UTR | 40.0% |
AGGATGAACCTTAACCTCAA+CGG | + | chr2_2:64367685-64367704 | None:intergenic | 40.0% | |
! | TCTTTAAGCAATGGGTTCCA+TGG | - | chr2_2:64367769-64367788 | Msa0264400:CDS | 40.0% |
ACAAAAGTTGGAACAAGCCA+TGG | + | chr2_2:64367789-64367808 | None:intergenic | 40.0% | |
ACGTTGGCAAACACAAAAGT+TGG | + | chr2_2:64367801-64367820 | None:intergenic | 40.0% | |
TGTCCTGAGAATGCATTTCA+TGG | - | chr2_2:64367855-64367874 | Msa0264400:intron | 40.0% | |
GTACCATGAAATGCATTCTC+AGG | + | chr2_2:64367861-64367880 | None:intergenic | 40.0% | |
!! | ACTTGTGTTGCTCCTTTTCT+TGG | - | chr2_2:64367879-64367898 | Msa0264400:intron | 40.0% |
!! | GCCAGTTTTGTGAATGAGTT+AGG | - | chr2_2:64368215-64368234 | Msa0264400:intron | 40.0% |
GCCTAACTCATTCACAAAAC+TGG | + | chr2_2:64368219-64368238 | None:intergenic | 40.0% | |
! | ATGTCTAAGATTGGGGGTAA+GGG | - | chr2_2:64368336-64368355 | Msa0264400:CDS | 40.0% |
TGTGTTTATAAATGGGGGGT+TGG | - | chr2_2:64368399-64368418 | Msa0264400:CDS | 40.0% | |
GTGTTTATAAATGGGGGGTT+GGG | - | chr2_2:64368400-64368419 | Msa0264400:CDS | 40.0% | |
GTGTGTTTGTAAGGATGCAT+AGG | - | chr2_2:64368543-64368562 | Msa0264400:intron | 40.0% | |
ACAACCCTCACACATCTATT+AGG | + | chr2_2:64368583-64368602 | None:intergenic | 40.0% | |
AAAGTGGTTCATGAACACGA+AGG | - | chr2_2:64368858-64368877 | Msa0264400:intron | 40.0% | |
GCAACCATATACAAGAGACA+AGG | + | chr2_2:64368890-64368909 | None:intergenic | 40.0% | |
GTCTCTTGTATATGGTTGCA+TGG | - | chr2_2:64368891-64368910 | Msa0264400:intron | 40.0% | |
TCTTGTATATGGTTGCATGG+TGG | - | chr2_2:64368894-64368913 | Msa0264400:intron | 40.0% | |
CTTGTATATGGTTGCATGGT+GGG | - | chr2_2:64368895-64368914 | Msa0264400:intron | 40.0% | |
TTGTATATGGTTGCATGGTG+GGG | - | chr2_2:64368896-64368915 | Msa0264400:intron | 40.0% | |
TCAACATGTTGGCAAGTACA+TGG | + | chr2_2:64368926-64368945 | None:intergenic | 40.0% | |
TAACTGCGAAAGGACAAGAA+AGG | + | chr2_2:64369180-64369199 | None:intergenic | 40.0% | |
TGTCCTTTCGCAGTTAGAAT+TGG | - | chr2_2:64369184-64369203 | Msa0264400:intron | 40.0% | |
! | GTCTCATGATGTTTTGCAGA+TGG | - | chr2_2:64369462-64369481 | Msa0264400:intron | 40.0% |
CGAAATTGTCAACATGTGGA+AGG | + | chr2_2:64369540-64369559 | None:intergenic | 40.0% | |
TGAGCGAAATTGTCAACATG+TGG | + | chr2_2:64369544-64369563 | None:intergenic | 40.0% | |
GTTGACAATTTCGCTCATCT+AGG | - | chr2_2:64369547-64369566 | Msa0264400:intron | 40.0% | |
AGCCAACAACAGTCTAAATC+TGG | - | chr2_2:64369634-64369653 | Msa0264400:intron | 40.0% | |
CTTACCCTGCAATGAGTAAT+AGG | + | chr2_2:64369729-64369748 | None:intergenic | 40.0% | |
TGACAGATTCATTACTGGGA+TGG | - | chr2_2:64369893-64369912 | Msa0264400:intron | 40.0% | |
GTTGTGTTCCTACCTCAAAA+TGG | - | chr2_2:64369973-64369992 | Msa0264400:intron | 40.0% | |
!!! | TGACAACTCCATTTTGAGGT+AGG | + | chr2_2:64369984-64370003 | None:intergenic | 40.0% |
TACCTCAAAATGGAGTTGTC+AGG | - | chr2_2:64369983-64370002 | Msa0264400:intron | 40.0% | |
! | TTCCTGACAACTCCATTTTG+AGG | + | chr2_2:64369988-64370007 | None:intergenic | 40.0% |
TCTATGCAGACAACGGAATT+CGG | - | chr2_2:64370153-64370172 | Msa0264400:CDS | 40.0% | |
AACATCACATGCATGAGCAA+TGG | - | chr2_2:64370186-64370205 | Msa0264400:CDS | 40.0% | |
AAGAGAGCAAAGGAATGGAA+TGG | - | chr2_2:64370502-64370521 | Msa0264400:five_prime_UTR | 40.0% | |
TCATAATCATGAGTGGAGGG+AGG | - | chr2_2:64367640-64367659 | Msa0264400:three_prime_UTR | 45.0% | |
ATGAACCTTAACCTCAACGG+TGG | + | chr2_2:64367682-64367701 | None:intergenic | 45.0% | |
AAATCACGATCACGAGTGAC+GGG | + | chr2_2:64367744-64367763 | None:intergenic | 45.0% | |
GAAATCACGATCACGAGTGA+CGG | + | chr2_2:64367745-64367764 | None:intergenic | 45.0% | |
TCACTCGTGATCGTGATTTC+AGG | - | chr2_2:64367745-64367764 | Msa0264400:CDS | 45.0% | |
AGGAAGAAGGACCAAAGAGA+GGG | + | chr2_2:64367935-64367954 | None:intergenic | 45.0% | |
AAGGAAGAAGGACCAAAGAG+AGG | + | chr2_2:64367936-64367955 | None:intergenic | 45.0% | |
! | CATCTAAAGTGTGACTCGTG+TGG | + | chr2_2:64368319-64368338 | None:intergenic | 45.0% |
! | GATGTCTAAGATTGGGGGTA+AGG | - | chr2_2:64368335-64368354 | Msa0264400:CDS | 45.0% |
CGAGCTAAGGGATAAGAAGT+TGG | - | chr2_2:64368437-64368456 | Msa0264400:CDS | 45.0% | |
GCTAAGGGATAAGAAGTTGG+AGG | - | chr2_2:64368440-64368459 | Msa0264400:CDS | 45.0% | |
!! | GGAGGTTCTAAGTTCAAACC+CGG | - | chr2_2:64368458-64368477 | Msa0264400:CDS | 45.0% |
TCTTGTGTCTGTGTCTCTAC+CGG | - | chr2_2:64368608-64368627 | Msa0264400:intron | 45.0% | |
TGGTTCATGAACACGAAGGT+TGG | - | chr2_2:64368862-64368881 | Msa0264400:intron | 45.0% | |
ATACAAACGGGCATCTCAGT+TGG | - | chr2_2:64369259-64369278 | Msa0264400:intron | 45.0% | |
! | GGTGCATTGTTTGGCTTACT+CGG | - | chr2_2:64369289-64369308 | Msa0264400:intron | 45.0% |
! | CATTGTTTGGCTTACTCGGA+GGG | - | chr2_2:64369293-64369312 | Msa0264400:intron | 45.0% |
GACAATTTCGCTCATCTAGG+AGG | - | chr2_2:64369550-64369569 | Msa0264400:intron | 45.0% | |
TTCGCTCATCTAGGAGGATT+TGG | - | chr2_2:64369556-64369575 | Msa0264400:intron | 45.0% | |
! | CATCTAGGAGGATTTGGTTC+TGG | - | chr2_2:64369562-64369581 | Msa0264400:intron | 45.0% |
!! | TTTGGTTCTGGCTTTCTGCT+TGG | - | chr2_2:64369574-64369593 | Msa0264400:intron | 45.0% |
ACTTGAATGAACGTTGCTCG+TGG | - | chr2_2:64369937-64369956 | Msa0264400:intron | 45.0% | |
GAAGAGCTAGTATTCGACAG+AGG | + | chr2_2:64370228-64370247 | None:intergenic | 45.0% | |
CTTTGTTCGCAACTTTGCCA+TGG | - | chr2_2:64370261-64370280 | Msa0264400:CDS | 45.0% | |
TTGTTCTCAGTCGGCAATGA+TGG | - | chr2_2:64370373-64370392 | Msa0264400:five_prime_UTR | 45.0% | |
!! | GTCAGGGTCTTGTTGGATTC+TGG | - | chr2_2:64367447-64367466 | Msa0264400:three_prime_UTR | 50.0% |
TTAAGGTTCATCCTCGCCGT+GGG | - | chr2_2:64367691-64367710 | Msa0264400:exon | 50.0% | |
! | GATAATGGTGGCCAGATAGC+AGG | + | chr2_2:64368293-64368312 | None:intergenic | 50.0% |
GCTATCTGGCCACCATTATC+AGG | - | chr2_2:64368293-64368312 | Msa0264400:CDS | 50.0% | |
TGACTCGTGTGGCCTGATAA+TGG | + | chr2_2:64368308-64368327 | None:intergenic | 50.0% | |
CTAAGTTCAAACCCGGACGA+AGG | - | chr2_2:64368465-64368484 | Msa0264400:CDS | 50.0% | |
GGCGCCTTGTCTCTTGTATA+TGG | - | chr2_2:64368883-64368902 | Msa0264400:intron | 50.0% | |
GGTGCATCTGGTGCATTGTT+TGG | - | chr2_2:64369280-64369299 | Msa0264400:intron | 50.0% | |
! | GCATTGTTTGGCTTACTCGG+AGG | - | chr2_2:64369292-64369311 | Msa0264400:intron | 50.0% |
! | GGGATGGTTCTACTCTTTCG+AGG | - | chr2_2:64369909-64369928 | Msa0264400:intron | 50.0% |
!! | GGGTCTTGTTGGATTCTGGC+TGG | - | chr2_2:64367451-64367470 | Msa0264400:three_prime_UTR | 55.0% |
TGGCACCACCGTTGAGGTTA+AGG | - | chr2_2:64367674-64367693 | Msa0264400:three_prime_UTR | 55.0% | |
GTTAAGGTTCATCCTCGCCG+TGG | - | chr2_2:64367690-64367709 | Msa0264400:exon | 55.0% | |
ACGACGAAGACAGAGACCCA+CGG | + | chr2_2:64367710-64367729 | None:intergenic | 55.0% | |
GCAGGCGGTTCAATGGATCT+TGG | + | chr2_2:64368275-64368294 | None:intergenic | 55.0% | |
CCAGATAGCAGGCGGTTCAA+TGG | + | chr2_2:64368282-64368301 | None:intergenic | 55.0% | |
CCATTGAACCGCCTGCTATC+TGG | - | chr2_2:64368279-64368298 | Msa0264400:CDS | 55.0% | |
AATGGTGGCCAGATAGCAGG+CGG | + | chr2_2:64368290-64368309 | None:intergenic | 55.0% | |
!! | CTCGTGTGGCCTGATAATGG+TGG | + | chr2_2:64368305-64368324 | None:intergenic | 55.0% |
! | GGCATCTCAGTTGGTGCATC+TGG | - | chr2_2:64369268-64369287 | Msa0264400:intron | 55.0% |
AGTGGAGGGAGGAACCCACA+TGG | - | chr2_2:64367651-64367670 | Msa0264400:three_prime_UTR | 60.0% | |
!! | CAACGGTGGTGCCACCATGT+GGG | + | chr2_2:64367668-64367687 | None:intergenic | 60.0% |
!! | TCAACGGTGGTGCCACCATG+TGG | + | chr2_2:64367669-64367688 | None:intergenic | 60.0% |
ACATGGTGGCACCACCGTTG+AGG | - | chr2_2:64367668-64367687 | Msa0264400:three_prime_UTR | 60.0% | |
! | TCACGATCACGAGTGACGGG+AGG | + | chr2_2:64367741-64367760 | None:intergenic | 60.0% |
GGAGGGAGGAACCCACATGG+TGG | - | chr2_2:64367654-64367673 | Msa0264400:three_prime_UTR | 65.0% | |
GAAGACAGAGACCCACGGCG+AGG | + | chr2_2:64367705-64367724 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2_2 | gene | 64367390 | 64370603 | 64367390 | ID=Msa0264400;Name=Msa0264400 |
chr2_2 | mRNA | 64367390 | 64370603 | 64367390 | ID=Msa0264400-mRNA-1;Parent=Msa0264400;Name=Msa0264400-mRNA-1;_AED=0.11;_eAED=0.11;_QI=258|1|1|1|1|1|6|316|384 |
chr2_2 | exon | 64367390 | 64367831 | 64367390 | ID=Msa0264400-mRNA-1:exon:20073;Parent=Msa0264400-mRNA-1 |
chr2_2 | exon | 64367968 | 64368094 | 64367968 | ID=Msa0264400-mRNA-1:exon:20072;Parent=Msa0264400-mRNA-1 |
chr2_2 | exon | 64368250 | 64368512 | 64368250 | ID=Msa0264400-mRNA-1:exon:20071;Parent=Msa0264400-mRNA-1 |
chr2_2 | exon | 64368633 | 64368796 | 64368633 | ID=Msa0264400-mRNA-1:exon:20070;Parent=Msa0264400-mRNA-1 |
chr2_2 | exon | 64369003 | 64369166 | 64369003 | ID=Msa0264400-mRNA-1:exon:20069;Parent=Msa0264400-mRNA-1 |
chr2_2 | exon | 64370035 | 64370603 | 64370035 | ID=Msa0264400-mRNA-1:exon:20068;Parent=Msa0264400-mRNA-1 |
chr2_2 | five_prime_UTR | 64370346 | 64370603 | 64370346 | ID=Msa0264400-mRNA-1:five_prime_utr;Parent=Msa0264400-mRNA-1 |
chr2_2 | CDS | 64370035 | 64370345 | 64370035 | ID=Msa0264400-mRNA-1:cds;Parent=Msa0264400-mRNA-1 |
chr2_2 | CDS | 64369003 | 64369166 | 64369003 | ID=Msa0264400-mRNA-1:cds;Parent=Msa0264400-mRNA-1 |
chr2_2 | CDS | 64368633 | 64368796 | 64368633 | ID=Msa0264400-mRNA-1:cds;Parent=Msa0264400-mRNA-1 |
chr2_2 | CDS | 64368250 | 64368512 | 64368250 | ID=Msa0264400-mRNA-1:cds;Parent=Msa0264400-mRNA-1 |
chr2_2 | CDS | 64367968 | 64368094 | 64367968 | ID=Msa0264400-mRNA-1:cds;Parent=Msa0264400-mRNA-1 |
chr2_2 | CDS | 64367706 | 64367831 | 64367706 | ID=Msa0264400-mRNA-1:cds;Parent=Msa0264400-mRNA-1 |
chr2_2 | three_prime_UTR | 64367390 | 64367705 | 64367390 | ID=Msa0264400-mRNA-1:three_prime_utr;Parent=Msa0264400-mRNA-1 |
Gene Sequence |
Protein sequence |