AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0264400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0264400 MtrunA17_Chr2g0328271 96.615 384 12 1 1 384 1 383 0.0 761
Msa0264400 MtrunA17_Chr4g0009841 62.824 347 126 2 37 383 34 377 1.03e-168 476
Msa0264400 MtrunA17_Chr7g0238701 59.504 363 138 4 25 383 6 363 3.52e-150 429
Msa0264400 MtrunA17_Chr6g0472501 63.226 310 106 3 31 338 23 326 7.12e-127 368
Msa0264400 MtrunA17_Chr1g0203681 53.191 329 135 3 16 339 5 319 5.48e-113 332
Msa0264400 MtrunA17_Chr2g0332941 55.636 275 114 3 44 312 30 302 5.18e-99 296
Msa0264400 MtrunA17_Chr3g0115331 39.785 372 208 4 23 382 12 379 1.02e-86 267
Msa0264400 MtrunA17_Chr2g0322601 39.500 200 94 5 142 340 1 174 9.03e-33 121
Msa0264400 MtrunA17_Chr2g0322611 48.913 92 47 0 99 190 2 93 3.50e-23 92.8
Msa0264400 MtrunA17_Chr8g0392201 38.542 96 43 2 225 320 28 107 1.38e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0264400 AT2G29050.1 62.434 378 139 2 6 383 15 389 6.00e-176 495
Msa0264400 AT3G53780.2 59.673 367 139 3 17 383 37 394 9.86e-154 439
Msa0264400 AT1G63120.1 63.946 294 98 2 44 335 30 317 1.06e-128 372
Msa0264400 AT2G29050.2 58.104 327 106 3 6 304 15 338 4.50e-126 367
Msa0264400 AT5G07250.1 59.467 338 123 3 4 337 18 345 3.10e-125 365
Msa0264400 AT3G53780.1 61.957 276 99 1 108 383 1 270 2.52e-124 360
Msa0264400 AT1G12750.4 56.066 305 129 2 33 335 6 307 6.32e-122 355
Msa0264400 AT1G12750.7 56.066 305 129 2 33 335 6 307 6.32e-122 355
Msa0264400 AT1G12750.6 56.066 305 129 2 33 335 6 307 6.32e-122 355
Msa0264400 AT1G12750.3 56.066 305 129 2 33 335 6 307 6.32e-122 355
Msa0264400 AT1G12750.1 56.066 305 129 2 33 335 6 307 6.32e-122 355
Msa0264400 AT3G53780.3 60.351 285 104 3 17 301 37 312 1.72e-114 336
Msa0264400 AT1G77860.2 44.083 338 184 4 48 382 49 384 9.21e-97 293
Msa0264400 AT1G52580.1 54.027 298 127 7 20 311 3 296 1.84e-96 290
Msa0264400 AT4G23070.1 55.326 291 125 2 44 334 28 313 1.66e-93 283
Msa0264400 AT5G07250.2 49.408 338 110 4 4 337 18 298 1.13e-88 270
Msa0264400 AT1G77860.1 45.151 299 159 4 48 343 49 345 1.10e-84 261
Msa0264400 AT1G12750.5 60.326 184 71 1 33 214 6 189 1.89e-76 235
Msa0264400 AT1G12750.2 59.893 187 73 1 33 217 6 192 4.55e-76 234

Find 113 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCAGGGTCTTGTTGGATTC+TGG 0.167687 2_2:-64370524 Msa0264400:five_prime_UTR
ATTCGGCTTGAACAAGAATT+TGG 0.175005 2_2:-64369008 Msa0264400:CDS
AAATGCTGTCGAATATTATT+AGG 0.205490 2_2:-64367402 Msa0264400:three_prime_UTR
TGATTCGTCCTCAGTTTAAA+TGG 0.238851 2_2:-64368363 Msa0264400:CDS
CTCTATGTGATATCTGGTTT+TGG 0.246364 2_2:-64368760 Msa0264400:CDS
GGATTTCTCTATGTGATATC+TGG 0.262897 2_2:-64368766 Msa0264400:CDS
TCTCAGAGCTCTTCATTAAT+TGG 0.278075 2_2:-64368651 Msa0264400:CDS
AATGGAATGGAAGATATATT+TGG 0.280921 2_2:-64367456 Msa0264400:three_prime_UTR
TCTTTCCTATTACTCATTGC+AGG 0.286895 2_2:-64368250 Msa0264400:CDS
CTTACCCTGCAATGAGTAAT+AGG 0.292148 2_2:+64368245 None:intergenic
TTCGCTCATCTAGGAGGATT+TGG 0.297054 2_2:-64368415 Msa0264400:CDS
GGCGCCTTGTCTCTTGTATA+TGG 0.304879 2_2:-64369088 Msa0264400:CDS
CTTGAACAAGAATTTGGATT+TGG 0.310501 2_2:-64369002 Msa0264400:intron
ATCTGAAATCTTTGTTCAAA+AGG 0.315789 2_2:-64370371 Msa0264400:five_prime_UTR
CATCTAGGAGGATTTGGTTC+TGG 0.319719 2_2:-64368409 Msa0264400:CDS
AACAAATTCCTAACTTTGTC+AGG 0.325137 2_2:-64370541 Msa0264400:five_prime_UTR
TCACTCGTGATCGTGATTTC+AGG 0.355861 2_2:-64370226 Msa0264400:CDS
TTGTGTATATGATTCATTCT+TGG 0.360552 2_2:-64367638 Msa0264400:three_prime_UTR
TAACTTTGTCAGGGTCTTGT+TGG 0.364641 2_2:-64370531 Msa0264400:five_prime_UTR
CTTAAAGAAAACCCTCTCTT+TGG 0.366436 2_2:-64370050 Msa0264400:CDS
TGGCACCACCGTTGAGGTTA+AGG 0.367443 2_2:-64370297 Msa0264400:CDS
GGCATCTCAGTTGGTGCATC+TGG 0.372637 2_2:-64368703 Msa0264400:CDS
TTTGGTTCTGGCTTTCTGCT+TGG 0.373387 2_2:-64368397 Msa0264400:CDS
CTTGTATATGGTTGCATGGT+GGG 0.379600 2_2:-64369076 Msa0264400:CDS
TGTCCTTTCGCAGTTAGAAT+TGG 0.379685 2_2:-64368787 Msa0264400:intron
TTGGACGATATATGCCAATA+AGG 0.382911 2_2:-64368632 Msa0264400:intron
GGTGCATCTGGTGCATTGTT+TGG 0.382955 2_2:-64368691 Msa0264400:CDS
AGCCAACAACAGTCTAAATC+TGG 0.385356 2_2:-64368337 Msa0264400:CDS
ACCTTATCAATATGTGTTGT+GGG 0.394616 2_2:-64368278 Msa0264400:CDS
ATCCAGATTTAGACTGTTGT+TGG 0.400472 2_2:+64368335 None:intergenic
AACAAGACCCTGACAAAGTT+AGG 0.404982 2_2:+64370533 None:intergenic
AATGCTGTCGAATATTATTA+GGG 0.406993 2_2:-64367401 Msa0264400:three_prime_UTR
GTTGTGTTCCTACCTCAAAA+TGG 0.409054 2_2:-64367998 Msa0264400:CDS
TCTATGCAGACAACGGAATT+CGG 0.409614 2_2:-64367818 Msa0264400:intron
GAAATGGGTTTGAATCAGTT+AGG 0.421296 2_2:+64370457 None:intergenic
GTTGTAATAAATTTAGCTGT+TGG 0.441288 2_2:-64368460 Msa0264400:CDS
TTGTTCTCAGTCGGCAATGA+TGG 0.441972 2_2:-64367598 Msa0264400:three_prime_UTR
GTCTGCGTTATTCATACAAA+CGG 0.445629 2_2:-64368725 Msa0264400:CDS
TCTGAAATCTTTGTTCAAAA+GGG 0.452645 2_2:-64370370 Msa0264400:five_prime_UTR
GGGTCTTGTTGGATTCTGGC+TGG 0.453364 2_2:-64370520 Msa0264400:five_prime_UTR
TGTCCTGAGAATGCATTTCA+TGG 0.455723 2_2:-64370116 Msa0264400:CDS
TACCTTATCAATATGTGTTG+TGG 0.455869 2_2:-64368279 Msa0264400:CDS
AGTAATAAACTTATGATGGC+TGG 0.458120 2_2:+64367563 None:intergenic
GGTGCATTGTTTGGCTTACT+CGG 0.462230 2_2:-64368682 Msa0264400:CDS
AAAGAGAATCTTCCAAGAAA+AGG 0.470067 2_2:+64370080 None:intergenic
TTTCAGGCTCTTTAAGCAAT+GGG 0.470163 2_2:-64370210 Msa0264400:CDS
GTTGACAATTTCGCTCATCT+AGG 0.472592 2_2:-64368424 Msa0264400:CDS
ACACATGCAAAATTTCTTGA+AGG 0.474975 2_2:-64367677 Msa0264400:three_prime_UTR
GTCTCTTGTATATGGTTGCA+TGG 0.482616 2_2:-64369080 Msa0264400:CDS
TAATAGTAATAAACTTATGA+TGG 0.486847 2_2:+64367559 None:intergenic
ATATTATTAGGGATATGTTA+AGG 0.495652 2_2:-64367390 Msa0264400:three_prime_UTR
TCTTTAAGCAATGGGTTCCA+TGG 0.504864 2_2:-64370202 Msa0264400:CDS
ACCCACAACACATATTGATA+AGG 0.507027 2_2:+64368277 None:intergenic
TACCTCAAAATGGAGTTGTC+AGG 0.507679 2_2:-64367988 Msa0264400:CDS
GGGATGGTTCTACTCTTTCG+AGG 0.511587 2_2:-64368062 Msa0264400:CDS
ATTTCAGGCTCTTTAAGCAA+TGG 0.516293 2_2:-64370211 Msa0264400:CDS
CATTGTTTGGCTTACTCGGA+GGG 0.524954 2_2:-64368678 Msa0264400:CDS
ACGTTGGCAAACACAAAAGT+TGG 0.526318 2_2:+64370173 None:intergenic
CTTTGTTCGCAACTTTGCCA+TGG 0.528366 2_2:-64367710 Msa0264400:CDS
TTCAAAATCATCTATAATCA+CGG 0.533216 2_2:-64370437 Msa0264400:five_prime_UTR
CTTTCCTATTACTCATTGCA+GGG 0.535119 2_2:-64368249 Msa0264400:intron
GTACCATGAAATGCATTCTC+AGG 0.536653 2_2:+64370113 None:intergenic
TCAACATGTTGGCAAGTACA+TGG 0.537008 2_2:+64369048 None:intergenic
AAATCACGATCACGAGTGAC+GGG 0.541550 2_2:+64370230 None:intergenic
TGACAGATTCATTACTGGGA+TGG 0.543513 2_2:-64368078 Msa0264400:intron
TAAACTGAGGACGAATCAAA+AGG 0.544513 2_2:+64368368 None:intergenic
TGCTCTAGAAGTAGATAAAG+TGG 0.545530 2_2:-64369129 Msa0264400:CDS
AGAAATTCGTTGTTCTCAGT+CGG 0.545619 2_2:-64367607 Msa0264400:three_prime_UTR
CACATGCAAAATTTCTTGAA+GGG 0.545781 2_2:-64367676 Msa0264400:three_prime_UTR
AAAACTCACGTAAAGGAAGA+AGG 0.547703 2_2:+64370026 None:intergenic
GACAATTTCGCTCATCTAGG+AGG 0.549429 2_2:-64368421 Msa0264400:CDS
TCTGCGTTATTCATACAAAC+GGG 0.553724 2_2:-64368724 Msa0264400:CDS
AAGAGAGCAAAGGAATGGAA+TGG 0.554489 2_2:-64367469 Msa0264400:three_prime_UTR
ACAAAAGTTGGAACAAGCCA+TGG 0.556908 2_2:+64370185 None:intergenic
ATACAAACGGGCATCTCAGT+TGG 0.569101 2_2:-64368712 Msa0264400:CDS
GAAATCACGATCACGAGTGA+CGG 0.572889 2_2:+64370229 None:intergenic
ATCAAAAGAGAGCAAAGGAA+TGG 0.574326 2_2:-64367474 Msa0264400:three_prime_UTR
TCAACGGTGGTGCCACCATG+TGG 0.575383 2_2:+64370305 None:intergenic
CATGTGTATCTATCTATCCA+TGG 0.577916 2_2:+64367693 None:intergenic
AAATCATAATCATGAGTGGA+GGG 0.582372 2_2:-64370334 Msa0264400:exon
TTGTATATGGTTGCATGGTG+GGG 0.585338 2_2:-64369075 Msa0264400:CDS
AGGAAGAAGGACCAAAGAGA+GGG 0.589526 2_2:+64370039 None:intergenic
AAACAATTCTCCACAGACAA+AGG 0.590975 2_2:-64370490 Msa0264400:five_prime_UTR
ACAAATTCCTAACTTTGTCA+GGG 0.594817 2_2:-64370540 Msa0264400:five_prime_UTR
TGGTTCATGAACACGAAGGT+TGG 0.597343 2_2:-64369109 Msa0264400:CDS
AACAATGAAAATAATAACGT+TGG 0.597447 2_2:+64370157 None:intergenic
GGAACAAAGCATTTATTGTG+AGG 0.597670 2_2:-64367967 Msa0264400:intron
TTAAGGTTCATCCTCGCCGT+GGG 0.597978 2_2:-64370280 Msa0264400:CDS
TCTTGTATATGGTTGCATGG+TGG 0.604832 2_2:-64369077 Msa0264400:CDS
GCATTGTTTGGCTTACTCGG+AGG 0.606501 2_2:-64368679 Msa0264400:CDS
GTTAAGGTTCATCCTCGCCG+TGG 0.606777 2_2:-64370281 Msa0264400:CDS
CGAAATTGTCAACATGTGGA+AGG 0.611940 2_2:+64368434 None:intergenic
TGAGCGAAATTGTCAACATG+TGG 0.615330 2_2:+64368430 None:intergenic
CAACGGTGGTGCCACCATGT+GGG 0.618108 2_2:+64370306 None:intergenic
AACATCACATGCATGAGCAA+TGG 0.619993 2_2:-64367785 Msa0264400:CDS
ACATGGTGGCACCACCGTTG+AGG 0.621441 2_2:-64370303 Msa0264400:CDS
AAGGAAGAAGGACCAAAGAG+AGG 0.633246 2_2:+64370038 None:intergenic
TGGCTTATCCATTTAAACTG+AGG 0.633333 2_2:+64368355 None:intergenic
AAAATCATAATCATGAGTGG+AGG 0.633390 2_2:-64370335 Msa0264400:exon
CTATTATCAAAAGAGAGCAA+AGG 0.634615 2_2:-64367479 Msa0264400:three_prime_UTR
TCACGATCACGAGTGACGGG+AGG 0.634822 2_2:+64370233 None:intergenic
ACGACGAAGACAGAGACCCA+CGG 0.637234 2_2:+64370264 None:intergenic
ACTTGAATGAACGTTGCTCG+TGG 0.663668 2_2:-64368034 Msa0264400:CDS
AGGATGAACCTTAACCTCAA+CGG 0.671763 2_2:+64370289 None:intergenic
TCATAATCATGAGTGGAGGG+AGG 0.674267 2_2:-64370331 Msa0264400:exon
GAAGAGCTAGTATTCGACAG+AGG 0.682346 2_2:+64367746 None:intergenic
GAAGACAGAGACCCACGGCG+AGG 0.685392 2_2:+64370269 None:intergenic
AGTGGAGGGAGGAACCCACA+TGG 0.690830 2_2:-64370320 Msa0264400:CDS
GCAACCATATACAAGAGACA+AGG 0.709780 2_2:+64369084 None:intergenic
AAAATCATCTATAATCACGG+AGG 0.711965 2_2:-64370434 Msa0264400:five_prime_UTR
ATGAACCTTAACCTCAACGG+TGG 0.726735 2_2:+64370292 None:intergenic
GGAGGGAGGAACCCACATGG+TGG 0.736064 2_2:-64370317 Msa0264400:CDS
AAAGTGGTTCATGAACACGA+AGG 0.793505 2_2:-64369113 Msa0264400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATTATGATTTTTTTTTTT+TGG + chr2_2:64367629-64367648 None:intergenic 10.0%
!!! ATTATAGATGATTTTGAAAT+GGG + chr2_2:64367532-64367551 None:intergenic 15.0%
!! AATGATATAAATACAGATAA+TGG + chr2_2:64369062-64369081 None:intergenic 15.0%
!! AAGACAATAAATTATTTATC+AGG + chr2_2:64369403-64369422 None:intergenic 15.0%
!! TAAATAATTTATTGTCTTTG+CGG - chr2_2:64369405-64369424 Msa0264400:intron 15.0%
!! ATATTACCTTTAATATTCTT+AGG - chr2_2:64369777-64369796 Msa0264400:intron 15.0%
!!! GTTTTTTCTTTTATCTAAAT+TGG - chr2_2:64370116-64370135 Msa0264400:CDS 15.0%
!! TAATAGTAATAAACTTATGA+TGG + chr2_2:64370415-64370434 None:intergenic 15.0%
!!! GATTATAGATGATTTTGAAA+TGG + chr2_2:64367533-64367552 None:intergenic 20.0%
!! TTCAAAATCATCTATAATCA+CGG - chr2_2:64367534-64367553 Msa0264400:three_prime_UTR 20.0%
!! AAAAAAATCATAATCATGAG+TGG - chr2_2:64367633-64367652 Msa0264400:three_prime_UTR 20.0%
!! AACAATGAAAATAATAACGT+TGG + chr2_2:64367817-64367836 None:intergenic 20.0%
!! TACATTAATCAAGTTATGAT+TGG - chr2_2:64368049-64368068 Msa0264400:CDS 20.0%
!! ATGAACATGTGTTTATAAAT+GGG - chr2_2:64368392-64368411 Msa0264400:CDS 20.0%
!!! TTGTTTTTACATAAATGTTC+TGG - chr2_2:64369080-64369099 Msa0264400:CDS 20.0%
!!! AGTAGTATTTAATCTAAAGT+TGG - chr2_2:64369863-64369882 Msa0264400:intron 20.0%
!!! AATTTTTTTTCCTTTGTCTG+TGG + chr2_2:64367494-64367513 None:intergenic 25.0%
!! ATCTGAAATCTTTGTTCAAA+AGG - chr2_2:64367600-64367619 Msa0264400:three_prime_UTR 25.0%
!! TCTGAAATCTTTGTTCAAAA+GGG - chr2_2:64367601-64367620 Msa0264400:three_prime_UTR 25.0%
! TTAATCAAGTTATGATTGGT+TGG - chr2_2:64368053-64368072 Msa0264400:CDS 25.0%
! CATGAACATGTGTTTATAAA+TGG - chr2_2:64368391-64368410 Msa0264400:CDS 25.0%
! TGAACATGTGTTTATAAATG+GGG - chr2_2:64368393-64368412 Msa0264400:CDS 25.0%
! TTCATAGATTACATTCTCTA+TGG - chr2_2:64368634-64368653 Msa0264400:CDS 25.0%
! GCTATTGCAAATACATAATT+TGG + chr2_2:64368713-64368732 None:intergenic 25.0%
! TATGTATTTGCAATAGCTAA+TGG - chr2_2:64368716-64368735 Msa0264400:CDS 25.0%
!! ACAGTACCAATCTTAATTTT+AGG - chr2_2:64368739-64368758 Msa0264400:CDS 25.0%
! TATCTGCCTAAAATTAAGAT+TGG + chr2_2:64368748-64368767 None:intergenic 25.0%
!! ATGTTGAGTCTTCTTTTTAT+TGG - chr2_2:64368939-64368958 Msa0264400:intron 25.0%
!! GTCTTCTTTTTATTGGAATT+CGG - chr2_2:64368946-64368965 Msa0264400:intron 25.0%
!!! TTTTAGTTCATTCACCTTAT+TGG + chr2_2:64369356-64369375 None:intergenic 25.0%
! CAAAATGGAAAGAAATAGAA+TGG + chr2_2:64369443-64369462 None:intergenic 25.0%
! GTTGTAATAAATTTAGCTGT+TGG - chr2_2:64369511-64369530 Msa0264400:intron 25.0%
!!! AATTTTGACAGATTCATTAC+TGG - chr2_2:64369888-64369907 Msa0264400:intron 25.0%
!!! ATTTTGACAGATTCATTACT+GGG - chr2_2:64369889-64369908 Msa0264400:intron 25.0%
! GAACTAGAAAATAGAATTGA+TGG + chr2_2:64370055-64370074 None:intergenic 25.0%
! TTGTGTATATGATTCATTCT+TGG - chr2_2:64370333-64370352 Msa0264400:exon 25.0%
! AATGGAATGGAAGATATATT+TGG - chr2_2:64370515-64370534 Msa0264400:five_prime_UTR 25.0%
! AAATGCTGTCGAATATTATT+AGG - chr2_2:64370569-64370588 Msa0264400:five_prime_UTR 25.0%
! AATGCTGTCGAATATTATTA+GGG - chr2_2:64370570-64370589 Msa0264400:five_prime_UTR 25.0%
AACAAATTCCTAACTTTGTC+AGG - chr2_2:64367430-64367449 Msa0264400:three_prime_UTR 30.0%
ACAAATTCCTAACTTTGTCA+GGG - chr2_2:64367431-64367450 Msa0264400:three_prime_UTR 30.0%
AAAATCATCTATAATCACGG+AGG - chr2_2:64367537-64367556 Msa0264400:three_prime_UTR 30.0%
AAAATCATAATCATGAGTGG+AGG - chr2_2:64367636-64367655 Msa0264400:three_prime_UTR 30.0%
AAATCATAATCATGAGTGGA+GGG - chr2_2:64367637-64367656 Msa0264400:three_prime_UTR 30.0%
AAAGAGAATCTTCCAAGAAA+AGG + chr2_2:64367894-64367913 None:intergenic 30.0%
GAAAAAGAAAACTCACGTAA+AGG + chr2_2:64367955-64367974 None:intergenic 30.0%
TGAGAATGAGTTTATTAGTG+TGG - chr2_2:64368174-64368193 Msa0264400:intron 30.0%
! ACACTTTAGATGTCTAAGAT+TGG - chr2_2:64368327-64368346 Msa0264400:CDS 30.0%
! CACTTTAGATGTCTAAGATT+GGG - chr2_2:64368328-64368347 Msa0264400:CDS 30.0%
! ACTTTAGATGTCTAAGATTG+GGG - chr2_2:64368329-64368348 Msa0264400:CDS 30.0%
GAACATGTGTTTATAAATGG+GGG - chr2_2:64368394-64368413 Msa0264400:CDS 30.0%
AACATGTGTTTATAAATGGG+GGG - chr2_2:64368395-64368414 Msa0264400:CDS 30.0%
!! AGTTAAATTGATTCGAGCTA+AGG - chr2_2:64368424-64368443 Msa0264400:CDS 30.0%
!! GTTAAATTGATTCGAGCTAA+GGG - chr2_2:64368425-64368444 Msa0264400:CDS 30.0%
TTAATATTTACTCCTTCGTC+CGG + chr2_2:64368480-64368499 None:intergenic 30.0%
AACAAAAACGTGTGTTTGTA+AGG - chr2_2:64368534-64368553 Msa0264400:intron 30.0%
AAAAACCTAATAGATGTGTG+AGG - chr2_2:64368575-64368594 Msa0264400:intron 30.0%
AAAACCTAATAGATGTGTGA+GGG - chr2_2:64368576-64368595 Msa0264400:intron 30.0%
GAATGTAATCTATGAATCAC+CGG + chr2_2:64368630-64368649 None:intergenic 30.0%
! TTTTAGGCAGATATATCTCT+TGG - chr2_2:64368755-64368774 Msa0264400:CDS 30.0%
! ATTTTCAGATTACAGGAGAT+GGG - chr2_2:64368819-64368838 Msa0264400:intron 30.0%
AAAAAGAAGACTCAACATGT+TGG + chr2_2:64368937-64368956 None:intergenic 30.0%
CTTGAACAAGAATTTGGATT+TGG - chr2_2:64368969-64368988 Msa0264400:intron 30.0%
! ACAAGAATTTGGATTTGGTA+TGG - chr2_2:64368974-64368993 Msa0264400:intron 30.0%
!! TACAGATAATGGAATACTGT+TGG + chr2_2:64369051-64369070 None:intergenic 30.0%
GGAAAGAAATAGAATGGTTT+AGG + chr2_2:64369437-64369456 None:intergenic 30.0%
CAAAACATCATGAGACAAAA+TGG + chr2_2:64369458-64369477 None:intergenic 30.0%
TACCTTATCAATATGTGTTG+TGG - chr2_2:64369692-64369711 Msa0264400:intron 30.0%
ACCTTATCAATATGTGTTGT+GGG - chr2_2:64369693-64369712 Msa0264400:intron 30.0%
CCAAGTCCTAAGAATATTAA+AGG + chr2_2:64369786-64369805 None:intergenic 30.0%
CCTTTAATATTCTTAGGACT+TGG - chr2_2:64369783-64369802 Msa0264400:intron 30.0%
ACAATATTCTATGCAGACAA+CGG - chr2_2:64370146-64370165 Msa0264400:CDS 30.0%
ACACATGCAAAATTTCTTGA+AGG - chr2_2:64370294-64370313 Msa0264400:CDS 30.0%
CACATGCAAAATTTCTTGAA+GGG - chr2_2:64370295-64370314 Msa0264400:CDS 30.0%
AGTAATAAACTTATGATGGC+TGG + chr2_2:64370411-64370430 None:intergenic 30.0%
CTATTATCAAAAGAGAGCAA+AGG - chr2_2:64370492-64370511 Msa0264400:five_prime_UTR 30.0%
AAACAATTCTCCACAGACAA+AGG - chr2_2:64367481-64367500 Msa0264400:three_prime_UTR 35.0%
! GAAATGGGTTTGAATCAGTT+AGG + chr2_2:64367517-64367536 None:intergenic 35.0%
ATTTCAGGCTCTTTAAGCAA+TGG - chr2_2:64367760-64367779 Msa0264400:CDS 35.0%
TTTCAGGCTCTTTAAGCAAT+GGG - chr2_2:64367761-64367780 Msa0264400:CDS 35.0%
! AAGAGAGGGTTTTCTTTAAG+TGG + chr2_2:64367921-64367940 None:intergenic 35.0%
CTTAAAGAAAACCCTCTCTT+TGG - chr2_2:64367921-64367940 Msa0264400:intron 35.0%
AAAACTCACGTAAAGGAAGA+AGG + chr2_2:64367948-64367967 None:intergenic 35.0%
! CTTTAGATGTCTAAGATTGG+GGG - chr2_2:64368330-64368349 Msa0264400:CDS 35.0%
TAATATTTACTCCTTCGTCC+GGG + chr2_2:64368479-64368498 None:intergenic 35.0%
! TACTCGCATTTTCAGATTAC+AGG - chr2_2:64368812-64368831 Msa0264400:intron 35.0%
! CATTTTCAGATTACAGGAGA+TGG - chr2_2:64368818-64368837 Msa0264400:intron 35.0%
!! TGCTCTAGAAGTAGATAAAG+TGG - chr2_2:64368842-64368861 Msa0264400:intron 35.0%
! ATTCGGCTTGAACAAGAATT+TGG - chr2_2:64368963-64368982 Msa0264400:intron 35.0%
! ATTTGGATTTGGTATGGTTC+TGG - chr2_2:64368980-64368999 Msa0264400:intron 35.0%
CGATATACTTGAACAATGCA+AGG + chr2_2:64369013-64369032 None:intergenic 35.0%
!! GATAATGGAATACTGTTGGT+CGG + chr2_2:64369047-64369066 None:intergenic 35.0%
AATCCAATTCTAACTGCGAA+AGG + chr2_2:64369190-64369209 None:intergenic 35.0%
GGATTTCTCTATGTGATATC+TGG - chr2_2:64369205-64369224 Msa0264400:intron 35.0%
!! CTCTATGTGATATCTGGTTT+TGG - chr2_2:64369211-64369230 Msa0264400:intron 35.0%
!!! TATGTGATATCTGGTTTTGG+AGG - chr2_2:64369214-64369233 Msa0264400:intron 35.0%
!!! ATGTGATATCTGGTTTTGGA+GGG - chr2_2:64369215-64369234 Msa0264400:intron 35.0%
GTCTGCGTTATTCATACAAA+CGG - chr2_2:64369246-64369265 Msa0264400:intron 35.0%
TCTGCGTTATTCATACAAAC+GGG - chr2_2:64369247-64369266 Msa0264400:intron 35.0%
TCTCAGAGCTCTTCATTAAT+TGG - chr2_2:64369320-64369339 Msa0264400:intron 35.0%
TTGGACGATATATGCCAATA+AGG - chr2_2:64369339-64369358 Msa0264400:intron 35.0%
TAAACTGAGGACGAATCAAA+AGG + chr2_2:64369606-64369625 None:intergenic 35.0%
TGATTCGTCCTCAGTTTAAA+TGG - chr2_2:64369608-64369627 Msa0264400:intron 35.0%
TGGCTTATCCATTTAAACTG+AGG + chr2_2:64369619-64369638 None:intergenic 35.0%
ATCCAGATTTAGACTGTTGT+TGG + chr2_2:64369639-64369658 None:intergenic 35.0%
ACCCACAACACATATTGATA+AGG + chr2_2:64369697-64369716 None:intergenic 35.0%
TCTTTCCTATTACTCATTGC+AGG - chr2_2:64369721-64369740 Msa0264400:intron 35.0%
CTTTCCTATTACTCATTGCA+GGG - chr2_2:64369722-64369741 Msa0264400:intron 35.0%
! GGAACAAAGCATTTATTGTG+AGG - chr2_2:64370004-64370023 Msa0264400:intron 35.0%
CATGTGTATCTATCTATCCA+TGG + chr2_2:64370281-64370300 None:intergenic 35.0%
AGAAATTCGTTGTTCTCAGT+CGG - chr2_2:64370364-64370383 Msa0264400:five_prime_UTR 35.0%
ATCAAAAGAGAGCAAAGGAA+TGG - chr2_2:64370497-64370516 Msa0264400:five_prime_UTR 35.0%
AACAAGACCCTGACAAAGTT+AGG + chr2_2:64367441-64367460 None:intergenic 40.0%
! TAACTTTGTCAGGGTCTTGT+TGG - chr2_2:64367440-64367459 Msa0264400:three_prime_UTR 40.0%
AGGATGAACCTTAACCTCAA+CGG + chr2_2:64367685-64367704 None:intergenic 40.0%
! TCTTTAAGCAATGGGTTCCA+TGG - chr2_2:64367769-64367788 Msa0264400:CDS 40.0%
ACAAAAGTTGGAACAAGCCA+TGG + chr2_2:64367789-64367808 None:intergenic 40.0%
ACGTTGGCAAACACAAAAGT+TGG + chr2_2:64367801-64367820 None:intergenic 40.0%
TGTCCTGAGAATGCATTTCA+TGG - chr2_2:64367855-64367874 Msa0264400:intron 40.0%
GTACCATGAAATGCATTCTC+AGG + chr2_2:64367861-64367880 None:intergenic 40.0%
!! ACTTGTGTTGCTCCTTTTCT+TGG - chr2_2:64367879-64367898 Msa0264400:intron 40.0%
!! GCCAGTTTTGTGAATGAGTT+AGG - chr2_2:64368215-64368234 Msa0264400:intron 40.0%
GCCTAACTCATTCACAAAAC+TGG + chr2_2:64368219-64368238 None:intergenic 40.0%
! ATGTCTAAGATTGGGGGTAA+GGG - chr2_2:64368336-64368355 Msa0264400:CDS 40.0%
TGTGTTTATAAATGGGGGGT+TGG - chr2_2:64368399-64368418 Msa0264400:CDS 40.0%
GTGTTTATAAATGGGGGGTT+GGG - chr2_2:64368400-64368419 Msa0264400:CDS 40.0%
GTGTGTTTGTAAGGATGCAT+AGG - chr2_2:64368543-64368562 Msa0264400:intron 40.0%
ACAACCCTCACACATCTATT+AGG + chr2_2:64368583-64368602 None:intergenic 40.0%
AAAGTGGTTCATGAACACGA+AGG - chr2_2:64368858-64368877 Msa0264400:intron 40.0%
GCAACCATATACAAGAGACA+AGG + chr2_2:64368890-64368909 None:intergenic 40.0%
GTCTCTTGTATATGGTTGCA+TGG - chr2_2:64368891-64368910 Msa0264400:intron 40.0%
TCTTGTATATGGTTGCATGG+TGG - chr2_2:64368894-64368913 Msa0264400:intron 40.0%
CTTGTATATGGTTGCATGGT+GGG - chr2_2:64368895-64368914 Msa0264400:intron 40.0%
TTGTATATGGTTGCATGGTG+GGG - chr2_2:64368896-64368915 Msa0264400:intron 40.0%
TCAACATGTTGGCAAGTACA+TGG + chr2_2:64368926-64368945 None:intergenic 40.0%
TAACTGCGAAAGGACAAGAA+AGG + chr2_2:64369180-64369199 None:intergenic 40.0%
TGTCCTTTCGCAGTTAGAAT+TGG - chr2_2:64369184-64369203 Msa0264400:intron 40.0%
! GTCTCATGATGTTTTGCAGA+TGG - chr2_2:64369462-64369481 Msa0264400:intron 40.0%
CGAAATTGTCAACATGTGGA+AGG + chr2_2:64369540-64369559 None:intergenic 40.0%
TGAGCGAAATTGTCAACATG+TGG + chr2_2:64369544-64369563 None:intergenic 40.0%
GTTGACAATTTCGCTCATCT+AGG - chr2_2:64369547-64369566 Msa0264400:intron 40.0%
AGCCAACAACAGTCTAAATC+TGG - chr2_2:64369634-64369653 Msa0264400:intron 40.0%
CTTACCCTGCAATGAGTAAT+AGG + chr2_2:64369729-64369748 None:intergenic 40.0%
TGACAGATTCATTACTGGGA+TGG - chr2_2:64369893-64369912 Msa0264400:intron 40.0%
GTTGTGTTCCTACCTCAAAA+TGG - chr2_2:64369973-64369992 Msa0264400:intron 40.0%
!!! TGACAACTCCATTTTGAGGT+AGG + chr2_2:64369984-64370003 None:intergenic 40.0%
TACCTCAAAATGGAGTTGTC+AGG - chr2_2:64369983-64370002 Msa0264400:intron 40.0%
! TTCCTGACAACTCCATTTTG+AGG + chr2_2:64369988-64370007 None:intergenic 40.0%
TCTATGCAGACAACGGAATT+CGG - chr2_2:64370153-64370172 Msa0264400:CDS 40.0%
AACATCACATGCATGAGCAA+TGG - chr2_2:64370186-64370205 Msa0264400:CDS 40.0%
AAGAGAGCAAAGGAATGGAA+TGG - chr2_2:64370502-64370521 Msa0264400:five_prime_UTR 40.0%
TCATAATCATGAGTGGAGGG+AGG - chr2_2:64367640-64367659 Msa0264400:three_prime_UTR 45.0%
ATGAACCTTAACCTCAACGG+TGG + chr2_2:64367682-64367701 None:intergenic 45.0%
AAATCACGATCACGAGTGAC+GGG + chr2_2:64367744-64367763 None:intergenic 45.0%
GAAATCACGATCACGAGTGA+CGG + chr2_2:64367745-64367764 None:intergenic 45.0%
TCACTCGTGATCGTGATTTC+AGG - chr2_2:64367745-64367764 Msa0264400:CDS 45.0%
AGGAAGAAGGACCAAAGAGA+GGG + chr2_2:64367935-64367954 None:intergenic 45.0%
AAGGAAGAAGGACCAAAGAG+AGG + chr2_2:64367936-64367955 None:intergenic 45.0%
! CATCTAAAGTGTGACTCGTG+TGG + chr2_2:64368319-64368338 None:intergenic 45.0%
! GATGTCTAAGATTGGGGGTA+AGG - chr2_2:64368335-64368354 Msa0264400:CDS 45.0%
CGAGCTAAGGGATAAGAAGT+TGG - chr2_2:64368437-64368456 Msa0264400:CDS 45.0%
GCTAAGGGATAAGAAGTTGG+AGG - chr2_2:64368440-64368459 Msa0264400:CDS 45.0%
!! GGAGGTTCTAAGTTCAAACC+CGG - chr2_2:64368458-64368477 Msa0264400:CDS 45.0%
TCTTGTGTCTGTGTCTCTAC+CGG - chr2_2:64368608-64368627 Msa0264400:intron 45.0%
TGGTTCATGAACACGAAGGT+TGG - chr2_2:64368862-64368881 Msa0264400:intron 45.0%
ATACAAACGGGCATCTCAGT+TGG - chr2_2:64369259-64369278 Msa0264400:intron 45.0%
! GGTGCATTGTTTGGCTTACT+CGG - chr2_2:64369289-64369308 Msa0264400:intron 45.0%
! CATTGTTTGGCTTACTCGGA+GGG - chr2_2:64369293-64369312 Msa0264400:intron 45.0%
GACAATTTCGCTCATCTAGG+AGG - chr2_2:64369550-64369569 Msa0264400:intron 45.0%
TTCGCTCATCTAGGAGGATT+TGG - chr2_2:64369556-64369575 Msa0264400:intron 45.0%
! CATCTAGGAGGATTTGGTTC+TGG - chr2_2:64369562-64369581 Msa0264400:intron 45.0%
!! TTTGGTTCTGGCTTTCTGCT+TGG - chr2_2:64369574-64369593 Msa0264400:intron 45.0%
ACTTGAATGAACGTTGCTCG+TGG - chr2_2:64369937-64369956 Msa0264400:intron 45.0%
GAAGAGCTAGTATTCGACAG+AGG + chr2_2:64370228-64370247 None:intergenic 45.0%
CTTTGTTCGCAACTTTGCCA+TGG - chr2_2:64370261-64370280 Msa0264400:CDS 45.0%
TTGTTCTCAGTCGGCAATGA+TGG - chr2_2:64370373-64370392 Msa0264400:five_prime_UTR 45.0%
!! GTCAGGGTCTTGTTGGATTC+TGG - chr2_2:64367447-64367466 Msa0264400:three_prime_UTR 50.0%
TTAAGGTTCATCCTCGCCGT+GGG - chr2_2:64367691-64367710 Msa0264400:exon 50.0%
! GATAATGGTGGCCAGATAGC+AGG + chr2_2:64368293-64368312 None:intergenic 50.0%
GCTATCTGGCCACCATTATC+AGG - chr2_2:64368293-64368312 Msa0264400:CDS 50.0%
TGACTCGTGTGGCCTGATAA+TGG + chr2_2:64368308-64368327 None:intergenic 50.0%
CTAAGTTCAAACCCGGACGA+AGG - chr2_2:64368465-64368484 Msa0264400:CDS 50.0%
GGCGCCTTGTCTCTTGTATA+TGG - chr2_2:64368883-64368902 Msa0264400:intron 50.0%
GGTGCATCTGGTGCATTGTT+TGG - chr2_2:64369280-64369299 Msa0264400:intron 50.0%
! GCATTGTTTGGCTTACTCGG+AGG - chr2_2:64369292-64369311 Msa0264400:intron 50.0%
! GGGATGGTTCTACTCTTTCG+AGG - chr2_2:64369909-64369928 Msa0264400:intron 50.0%
!! GGGTCTTGTTGGATTCTGGC+TGG - chr2_2:64367451-64367470 Msa0264400:three_prime_UTR 55.0%
TGGCACCACCGTTGAGGTTA+AGG - chr2_2:64367674-64367693 Msa0264400:three_prime_UTR 55.0%
GTTAAGGTTCATCCTCGCCG+TGG - chr2_2:64367690-64367709 Msa0264400:exon 55.0%
ACGACGAAGACAGAGACCCA+CGG + chr2_2:64367710-64367729 None:intergenic 55.0%
GCAGGCGGTTCAATGGATCT+TGG + chr2_2:64368275-64368294 None:intergenic 55.0%
CCAGATAGCAGGCGGTTCAA+TGG + chr2_2:64368282-64368301 None:intergenic 55.0%
CCATTGAACCGCCTGCTATC+TGG - chr2_2:64368279-64368298 Msa0264400:CDS 55.0%
AATGGTGGCCAGATAGCAGG+CGG + chr2_2:64368290-64368309 None:intergenic 55.0%
!! CTCGTGTGGCCTGATAATGG+TGG + chr2_2:64368305-64368324 None:intergenic 55.0%
! GGCATCTCAGTTGGTGCATC+TGG - chr2_2:64369268-64369287 Msa0264400:intron 55.0%
AGTGGAGGGAGGAACCCACA+TGG - chr2_2:64367651-64367670 Msa0264400:three_prime_UTR 60.0%
!! CAACGGTGGTGCCACCATGT+GGG + chr2_2:64367668-64367687 None:intergenic 60.0%
!! TCAACGGTGGTGCCACCATG+TGG + chr2_2:64367669-64367688 None:intergenic 60.0%
ACATGGTGGCACCACCGTTG+AGG - chr2_2:64367668-64367687 Msa0264400:three_prime_UTR 60.0%
! TCACGATCACGAGTGACGGG+AGG + chr2_2:64367741-64367760 None:intergenic 60.0%
GGAGGGAGGAACCCACATGG+TGG - chr2_2:64367654-64367673 Msa0264400:three_prime_UTR 65.0%
GAAGACAGAGACCCACGGCG+AGG + chr2_2:64367705-64367724 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 64367390 64370603 64367390 ID=Msa0264400;Name=Msa0264400
chr2_2 mRNA 64367390 64370603 64367390 ID=Msa0264400-mRNA-1;Parent=Msa0264400;Name=Msa0264400-mRNA-1;_AED=0.11;_eAED=0.11;_QI=258|1|1|1|1|1|6|316|384
chr2_2 exon 64367390 64367831 64367390 ID=Msa0264400-mRNA-1:exon:20073;Parent=Msa0264400-mRNA-1
chr2_2 exon 64367968 64368094 64367968 ID=Msa0264400-mRNA-1:exon:20072;Parent=Msa0264400-mRNA-1
chr2_2 exon 64368250 64368512 64368250 ID=Msa0264400-mRNA-1:exon:20071;Parent=Msa0264400-mRNA-1
chr2_2 exon 64368633 64368796 64368633 ID=Msa0264400-mRNA-1:exon:20070;Parent=Msa0264400-mRNA-1
chr2_2 exon 64369003 64369166 64369003 ID=Msa0264400-mRNA-1:exon:20069;Parent=Msa0264400-mRNA-1
chr2_2 exon 64370035 64370603 64370035 ID=Msa0264400-mRNA-1:exon:20068;Parent=Msa0264400-mRNA-1
chr2_2 five_prime_UTR 64370346 64370603 64370346 ID=Msa0264400-mRNA-1:five_prime_utr;Parent=Msa0264400-mRNA-1
chr2_2 CDS 64370035 64370345 64370035 ID=Msa0264400-mRNA-1:cds;Parent=Msa0264400-mRNA-1
chr2_2 CDS 64369003 64369166 64369003 ID=Msa0264400-mRNA-1:cds;Parent=Msa0264400-mRNA-1
chr2_2 CDS 64368633 64368796 64368633 ID=Msa0264400-mRNA-1:cds;Parent=Msa0264400-mRNA-1
chr2_2 CDS 64368250 64368512 64368250 ID=Msa0264400-mRNA-1:cds;Parent=Msa0264400-mRNA-1
chr2_2 CDS 64367968 64368094 64367968 ID=Msa0264400-mRNA-1:cds;Parent=Msa0264400-mRNA-1
chr2_2 CDS 64367706 64367831 64367706 ID=Msa0264400-mRNA-1:cds;Parent=Msa0264400-mRNA-1
chr2_2 three_prime_UTR 64367390 64367705 64367390 ID=Msa0264400-mRNA-1:three_prime_utr;Parent=Msa0264400-mRNA-1
Gene Sequence

>Msa0264400

ATGAGTGGAGGGAGGAACCCACATGGTGGCACCACCGTTGAGGTTAAGGTTCATCCTCGCCGTGGGTCTCTGTCTTCGTCGTCGTCGAATCCTCCCGTCACTCGTGATCGTGATTTCAGGCTCTTTAAGCAATGGGTTCCATGGCTTGTTCCAACTTTTGTGTTTGCCAACGTTATTATTTTCATTGTTACAATGTATGTTAATGATTGTCCTGAGAATGCATTTCATGGTACTTGTGTTGCTCCTTTTCTTGGAAGATTCTCTTTTCAACCACTTAAAGAAAACCCTCTCTTTGGTCCTTCTTCCTTTACATTACAGGAGATGGGTGCTCTAGAAGTAGATAAAGTGGTTCATGAACACGAAGGTTGGCGCCTTGTCTCTTGTATATGGTTGCATGGTGGGGCTATCCATGTACTTGCCAACATGTTGAGTCTTCTTTTTATTGGAATTCGGCTTGAACAAGAATTTGGATTTGTTAGAATTGGATTTCTCTATGTGATATCTGGTTTTGGAGGGAGTTTGCTGTCTGCGTTATTCATACAAACGGGCATCTCAGTTGGTGCATCTGGTGCATTGTTTGGCTTACTCGGAGGGATGCTCTCAGAGCTCTTCATTAATTGGACGATATATGCCAATAAGATGGCTGCATTGTTGACTCTTATAGTCATTGTTGTAATAAATTTAGCTGTTGGAGTCCTTCCACATGTTGACAATTTCGCTCATCTAGGAGGATTTGGTTCTGGCTTTCTGCTTGGATTTGTCCTTTTGATTCGTCCTCAGTTTAAATGGATAAGCCAACAACAGTCTAAATCTGGATCTCATGCATTTTCTGTTAAACACAATAAGTACTTACCTTATCAATATGTGTTGTGGGTTTTGTCTTTCCTATTACTCATTGCAGGATTCATTACTGGGATGGTTCTACTCTTTCGAGGTGTTAACTTGAATGAACGTTGCTCGTGGTGTCATTATTTAAGTTGTGTTCCTACCTCAAAATGGAGTTGTCAGGAACAAAGCATTTATTGTGAGACAACGGAATTCGGAAATCAACTTAACATCACATGCATGAGCAATGGTAGAAGTGACATTTATCCTCTGTCGAATACTAGCTCTTCTGATAGACAACAACTTTGTTCGCAACTTTGCCATGGATAG

Protein sequence

>Msa0264400

MSGGRNPHGGTTVEVKVHPRRGSLSSSSSNPPVTRDRDFRLFKQWVPWLVPTFVFANVIIFIVTMYVNDCPENAFHGTCVAPFLGRFSFQPLKENPLFGPSSFTLQEMGALEVDKVVHEHEGWRLVSCIWLHGGAIHVLANMLSLLFIGIRLEQEFGFVRIGFLYVISGFGGSLLSALFIQTGISVGASGALFGLLGGMLSELFINWTIYANKMAALLTLIVIVVINLAVGVLPHVDNFAHLGGFGSGFLLGFVLLIRPQFKWISQQQSKSGSHAFSVKHNKYLPYQYVLWVLSFLLLIAGFITGMVLLFRGVNLNERCSWCHYLSCVPTSKWSCQEQSIYCETTEFGNQLNITCMSNGRSDIYPLSNTSSSDRQQLCSQLCHG*