Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150270 | GAU13521.1 | 50.538 | 93 | 29 | 1 | 1 | 76 | 128 | 220 | 7.34e-25 | 105 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0150270 | A0A392NL02 | 57.895 | 76 | 22 | 1 | 2 | 77 | 41 | 106 | 1.22e-23 | 97.4 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003890 | Msa0150270 | 0.802830 | 4.655989e-49 | -8.615850e-47 |
| Msa0011170 | Msa0150270 | 0.820977 | 5.158239e-53 | -8.615850e-47 |
| Msa0014710 | Msa0150270 | 0.856053 | 4.173084e-62 | -8.615850e-47 |
| Msa0017510 | Msa0150270 | 0.832531 | 8.963975e-56 | -8.615850e-47 |
| Msa0028700 | Msa0150270 | 0.803707 | 3.065573e-49 | -8.615850e-47 |
| Msa0031340 | Msa0150270 | 0.818348 | 2.054172e-52 | -8.615850e-47 |
| Msa0073530 | Msa0150270 | 0.809365 | 1.961210e-50 | -8.615850e-47 |
| Msa0075880 | Msa0150270 | 0.809067 | 2.272632e-50 | -8.615850e-47 |
| Msa0101710 | Msa0150270 | 0.818170 | 2.254138e-52 | -8.615850e-47 |
| Msa0105070 | Msa0150270 | 0.803465 | 3.441552e-49 | -8.615850e-47 |
| Msa0115270 | Msa0150270 | 0.804301 | 2.306973e-49 | -8.615850e-47 |
| Msa0116770 | Msa0150270 | 0.820927 | 5.296769e-53 | -8.615850e-47 |
| Msa0150270 | Msa0150840 | 0.804924 | 1.710531e-49 | -8.615850e-47 |
| Msa0150270 | Msa0157290 | 0.831494 | 1.617069e-55 | -8.615850e-47 |
| Msa0150270 | Msa0165210 | 0.826533 | 2.574886e-54 | -8.615850e-47 |
| Msa0150270 | Msa0165220 | 0.816835 | 4.506140e-52 | -8.615850e-47 |
| Msa0150270 | Msa0170230 | 0.815549 | 8.733494e-52 | -8.615850e-47 |
| Msa0150270 | Msa0180500 | 0.839421 | 1.600705e-57 | -8.615850e-47 |
| Msa0150270 | Msa0197660 | 0.832175 | 1.098100e-55 | -8.615850e-47 |
| Msa0150270 | Msa0215320 | -0.814125 | 1.806548e-51 | -8.615850e-47 |
| Msa0150270 | Msa0215840 | 0.806334 | 8.651648e-50 | -8.615850e-47 |
| Msa0150270 | Msa0220580 | 0.807188 | 5.710641e-50 | -8.615850e-47 |
| Msa0150270 | Msa0220740 | 0.815477 | 9.060402e-52 | -8.615850e-47 |
| Msa0150270 | Msa0223260 | 0.840236 | 9.817735e-58 | -8.615850e-47 |
| Msa0150270 | Msa0223410 | -0.812403 | 4.314985e-51 | -8.615850e-47 |
| Msa0150270 | Msa0226890 | 0.820924 | 5.304380e-53 | -8.615850e-47 |
| Msa0150270 | Msa0239800 | 0.825713 | 4.034779e-54 | -8.615850e-47 |
| Msa0150270 | Msa0243100 | 0.802623 | 5.138234e-49 | -8.615850e-47 |
| Msa0150270 | Msa0255080 | 0.802001 | 6.902314e-49 | -8.615850e-47 |
| Msa0150270 | Msa0258760 | 0.806748 | 7.073760e-50 | -8.615850e-47 |
| Msa0150270 | Msa0259370 | 0.823134 | 1.630712e-53 | -8.615850e-47 |
| Msa0150270 | Msa0277820 | 0.810222 | 1.283294e-50 | -8.615850e-47 |
| Msa0150270 | Msa0278110 | 0.849030 | 4.199803e-60 | -8.615850e-47 |
| Msa0150270 | Msa0279790 | 0.800611 | 1.328511e-48 | -8.615850e-47 |
| Msa0150270 | Msa0287650 | 0.809314 | 2.011362e-50 | -8.615850e-47 |
| Msa0150270 | Msa0288100 | 0.809994 | 1.437099e-50 | -8.615850e-47 |
| Msa0150270 | Msa0298460 | 0.803152 | 3.995190e-49 | -8.615850e-47 |
| Msa0150270 | Msa0317510 | 0.830800 | 2.394311e-55 | -8.615850e-47 |
| Msa0150270 | Msa0323610 | 0.807547 | 4.792960e-50 | -8.615850e-47 |
| Msa0150270 | Msa0340450 | 0.808907 | 2.459242e-50 | -8.615850e-47 |
| Msa0150270 | Msa0344980 | 0.824427 | 8.117831e-54 | -8.615850e-47 |
| Msa0150270 | Msa0345970 | 0.803789 | 2.948523e-49 | -8.615850e-47 |
| Msa0150270 | Msa0350990 | 0.829425 | 5.185338e-55 | -8.615850e-47 |
| Msa0150270 | Msa0351030 | 0.831690 | 1.446851e-55 | -8.615850e-47 |
| Msa0150270 | Msa0351100 | 0.819412 | 1.177307e-52 | -8.615850e-47 |
| Msa0150270 | Msa0355220 | 0.818966 | 1.487123e-52 | -8.615850e-47 |
| Msa0150270 | Msa0359030 | 0.809429 | 1.900777e-50 | -8.615850e-47 |
| Msa0150270 | Msa0395790 | 0.831019 | 2.116336e-55 | -8.615850e-47 |
| Msa0150270 | Msa0397750 | 0.806908 | 6.544197e-50 | -8.615850e-47 |
| Msa0150270 | Msa0402290 | 0.820768 | 5.759840e-53 | -8.615850e-47 |
| Msa0150270 | Msa0405370 | 0.813723 | 2.215032e-51 | -8.615850e-47 |
| Msa0150270 | Msa0406880 | 0.807088 | 5.994900e-50 | -8.615850e-47 |
| Msa0150270 | Msa0436050 | 0.805202 | 1.496064e-49 | -8.615850e-47 |
| Msa0150270 | Msa0440750 | 0.813064 | 3.092610e-51 | -8.615850e-47 |
| Msa0150270 | Msa0443260 | 0.809338 | 1.987561e-50 | -8.615850e-47 |
| Msa0150270 | Msa0453330 | 0.805049 | 1.610148e-49 | -8.615850e-47 |
| Msa0150270 | Msa0466390 | 0.811644 | 6.314606e-51 | -8.615850e-47 |
| Msa0150270 | Msa0480980 | 0.804480 | 2.116552e-49 | -8.615850e-47 |
| Msa0150270 | Msa0484780 | 0.828246 | 1.000197e-54 | -8.615850e-47 |
| Msa0150270 | Msa0488560 | 0.801413 | 9.109725e-49 | -8.615850e-47 |
| Msa0150270 | Msa0500360 | 0.800679 | 1.287319e-48 | -8.615850e-47 |
| Msa0150270 | Msa0509390 | 0.800032 | 1.742795e-48 | -8.615850e-47 |
| Msa0150270 | Msa0517110 | 0.808033 | 3.777530e-50 | -8.615850e-47 |
| Msa0150270 | Msa0519000 | 0.803900 | 2.796078e-49 | -8.615850e-47 |
| Msa0150270 | Msa0523940 | 0.812138 | 4.929217e-51 | -8.615850e-47 |
| Msa0150270 | Msa0545700 | 0.828580 | 8.309152e-55 | -8.615850e-47 |
| Msa0150270 | Msa0563840 | 0.816348 | 5.792573e-52 | -8.615850e-47 |
| Msa0150270 | Msa0577500 | 0.803801 | 2.931032e-49 | -8.615850e-47 |
| Msa0150270 | Msa0585230 | 0.817715 | 2.855351e-52 | -8.615850e-47 |
| Msa0150270 | Msa0593650 | 0.815349 | 9.677616e-52 | -8.615850e-47 |
| Msa0150270 | Msa0611800 | 0.801515 | 8.682786e-49 | -8.615850e-47 |
| Msa0150270 | Msa0638070 | 0.806099 | 9.694206e-50 | -8.615850e-47 |
| Msa0150270 | Msa0656530 | 0.812939 | 3.294263e-51 | -8.615850e-47 |
| Msa0150270 | Msa0657970 | 0.800830 | 1.198963e-48 | -8.615850e-47 |
| Msa0150270 | Msa0663240 | 0.822696 | 2.063200e-53 | -8.615850e-47 |
| Msa0150270 | Msa0663380 | 0.808316 | 3.287873e-50 | -8.615850e-47 |
| Msa0150270 | Msa0663920 | 0.805654 | 1.202490e-49 | -8.615850e-47 |
| Msa0150270 | Msa0672690 | 0.800260 | 1.566331e-48 | -8.615850e-47 |
| Msa0150270 | Msa0673460 | 0.813204 | 2.881545e-51 | -8.615850e-47 |
| Msa0150270 | Msa0688480 | 0.827013 | 1.977983e-54 | -8.615850e-47 |
| Msa0150270 | Msa0743720 | 0.830961 | 2.186326e-55 | -8.615850e-47 |
| Msa0150270 | Msa0745790 | 0.804165 | 2.461843e-49 | -8.615850e-47 |
| Msa0150270 | Msa0759410 | 0.827152 | 1.831369e-54 | -8.615850e-47 |
| Msa0150270 | Msa0760130 | 0.821438 | 4.038302e-53 | -8.615850e-47 |
| Msa0150270 | Msa0762970 | 0.803878 | 2.824651e-49 | -8.615850e-47 |
| Msa0150270 | Msa0773840 | 0.813982 | 1.942580e-51 | -8.615850e-47 |
| Msa0150270 | Msa0777230 | 0.818648 | 1.756952e-52 | -8.615850e-47 |
| Msa0150270 | Msa0820850 | 0.830290 | 3.192211e-55 | -8.615850e-47 |
| Msa0150270 | Msa0832040 | 0.807500 | 4.903270e-50 | -8.615850e-47 |
| Msa0150270 | Msa0832150 | 0.804896 | 1.733191e-49 | -8.615850e-47 |
| Msa0150270 | Msa0842650 | 0.818684 | 1.724253e-52 | -8.615850e-47 |
| Msa0150270 | Msa0843640 | 0.801173 | 1.020051e-48 | -8.615850e-47 |
| Msa0150270 | Msa0844450 | 0.805964 | 1.035328e-49 | -8.615850e-47 |
| Msa0150270 | Msa0844470 | 0.801124 | 1.043953e-48 | -8.615850e-47 |
| Msa0150270 | Msa0844490 | 0.816682 | 4.877206e-52 | -8.615850e-47 |
| Msa0150270 | Msa0849030 | 0.802703 | 4.946335e-49 | -8.615850e-47 |
| Msa0150270 | Msa0857640 | 0.800194 | 1.615652e-48 | -8.615850e-47 |
| Msa0150270 | Msa0861130 | 0.827802 | 1.278948e-54 | -8.615850e-47 |
| Msa0150270 | Msa0871270 | 0.802478 | 5.505920e-49 | -8.615850e-47 |
| Msa0150270 | Msa0880140 | 0.828813 | 7.298237e-55 | -8.615850e-47 |
| Msa0150270 | Msa0897330 | 0.800228 | 1.590191e-48 | -8.615850e-47 |
| Msa0150270 | Msa0907070 | 0.822351 | 2.480970e-53 | -8.615850e-47 |
| Msa0150270 | Msa0907950 | 0.808856 | 2.521699e-50 | -8.615850e-47 |
| Msa0150270 | Msa0922410 | 0.812536 | 4.035318e-51 | -8.615850e-47 |
| Msa0150270 | Msa0925290 | 0.802434 | 5.621660e-49 | -8.615850e-47 |
| Msa0150270 | Msa0927380 | 0.805816 | 1.112224e-49 | -8.615850e-47 |
| Msa0150270 | Msa0936300 | 0.809589 | 1.756175e-50 | -8.615850e-47 |
| Msa0150270 | Msa0938220 | 0.817015 | 4.104644e-52 | -8.615850e-47 |
| Msa0150270 | Msa0959360 | 0.802615 | 5.158665e-49 | -8.615850e-47 |
| Msa0150270 | Msa0964900 | 0.804547 | 2.050146e-49 | -8.615850e-47 |
| Msa0150270 | Msa0969520 | 0.820244 | 7.598287e-53 | -8.615850e-47 |
| Msa0150270 | Msa0973100 | 0.802737 | 4.866882e-49 | -8.615850e-47 |
| Msa0150270 | Msa0974070 | 0.803398 | 3.553763e-49 | -8.615850e-47 |
| Msa0150270 | Msa0980090 | 0.813285 | 2.765081e-51 | -8.615850e-47 |
| Msa0150270 | Msa0993290 | 0.802931 | 4.439375e-49 | -8.615850e-47 |
| Msa0150270 | Msa0993600 | 0.803673 | 3.115754e-49 | -8.615850e-47 |
| Msa0150270 | Msa1003620 | 0.807075 | 6.034965e-50 | -8.615850e-47 |
| Msa0150270 | Msa1014540 | 0.823551 | 1.303253e-53 | -8.615850e-47 |
| Msa0150270 | Msa1030970 | 0.833157 | 6.267645e-56 | -8.615850e-47 |
| Msa0150270 | Msa1070010 | 0.815250 | 1.017966e-51 | -8.615850e-47 |
| Msa0150270 | Msa1075220 | -0.816087 | 6.625818e-52 | -8.615850e-47 |
| Msa0150270 | Msa1075540 | 0.837147 | 6.169746e-57 | -8.615850e-47 |
| Msa0150270 | Msa1075650 | 0.810024 | 1.415882e-50 | -8.615850e-47 |
| Msa0150270 | Msa1079590 | 0.807824 | 4.184884e-50 | -8.615850e-47 |
| Msa0150270 | Msa1082500 | 0.831098 | 2.023033e-55 | -8.615850e-47 |
| Msa0150270 | Msa1082580 | 0.802741 | 4.858603e-49 | -8.615850e-47 |
| Msa0150270 | Msa1085740 | 0.814212 | 1.728378e-51 | -8.615850e-47 |
| Msa0150270 | Msa1113170 | 0.805749 | 1.148713e-49 | -8.615850e-47 |
| Msa0150270 | Msa1116130 | -0.805451 | 1.326533e-49 | -8.615850e-47 |
| Msa0150270 | Msa1124410 | 0.806190 | 9.276776e-50 | -8.615850e-47 |
| Msa0150270 | Msa1131220 | 0.816327 | 5.854381e-52 | -8.615850e-47 |
| Msa0150270 | Msa1137570 | 0.819824 | 9.482977e-53 | -8.615850e-47 |
| Msa0150270 | Msa1162550 | -0.814523 | 1.475104e-51 | -8.615850e-47 |
| Msa0150270 | Msa1174040 | 0.804890 | 1.738337e-49 | -8.615850e-47 |
| Msa0150270 | Msa1178180 | 0.804474 | 2.123034e-49 | -8.615850e-47 |
| Msa0150270 | Msa1186060 | 0.803844 | 2.870877e-49 | -8.615850e-47 |
| Msa0150270 | Msa1193290 | 0.807428 | 5.078531e-50 | -8.615850e-47 |
| Msa0150270 | Msa1199220 | 0.816264 | 6.048078e-52 | -8.615850e-47 |
| Msa0150270 | Msa1199620 | 0.810963 | 8.875338e-51 | -8.615850e-47 |
| Msa0150270 | Msa1233500 | 0.804335 | 2.269979e-49 | -8.615850e-47 |
| Msa0150270 | Msa1233890 | 0.829477 | 5.035376e-55 | -8.615850e-47 |
| Msa0150270 | Msa1238930 | 0.824096 | 9.710749e-54 | -8.615850e-47 |
| Msa0150270 | Msa1244250 | 0.818570 | 1.829813e-52 | -8.615850e-47 |
| Msa0150270 | Msa1247250 | 0.817266 | 3.605302e-52 | -8.615850e-47 |
| Msa0150270 | Msa1249490 | 0.818208 | 2.209933e-52 | -8.615850e-47 |
| Msa0150270 | Msa1277660 | 0.806613 | 7.555104e-50 | -8.615850e-47 |
| Msa0150270 | Msa1284680 | 0.843816 | 1.110186e-58 | -8.615850e-47 |
| Msa0150270 | Msa1305190 | 0.809507 | 1.828790e-50 | -8.615850e-47 |
| Msa0150270 | Msa1305340 | 0.812395 | 4.331376e-51 | -8.615850e-47 |
| Msa0150270 | Msa1306760 | 0.829597 | 4.710200e-55 | -8.615850e-47 |
| Msa0150270 | Msa1306840 | 0.803092 | 4.110215e-49 | -8.615850e-47 |
| Msa0150270 | Msa1306850 | 0.821515 | 3.875301e-53 | -8.615850e-47 |
| Msa0150270 | Msa1308380 | 0.800613 | 1.327599e-48 | -8.615850e-47 |
| Msa0150270 | Msa1314340 | 0.815961 | 7.068516e-52 | -8.615850e-47 |
| Msa0150270 | Msa1322890 | 0.800251 | 1.572951e-48 | -8.615850e-47 |
| Msa0150270 | Msa1346370 | 0.800176 | 1.629411e-48 | -8.615850e-47 |
| Msa0150270 | Msa1348950 | 0.815109 | 1.093844e-51 | -8.615850e-47 |
| Msa0150270 | Msa1359040 | 0.830783 | 2.417050e-55 | -8.615850e-47 |
| Msa0150270 | Msa1362880 | 0.803383 | 3.578812e-49 | -8.615850e-47 |
| Msa0150270 | Msa1372760 | 0.820336 | 7.239442e-53 | -8.615850e-47 |
| Msa0150270 | Msa1395900 | 0.804455 | 2.142453e-49 | -8.615850e-47 |
| Msa0150270 | Msa1397860 | 0.807518 | 4.861255e-50 | -8.615850e-47 |
| Msa0150270 | Msa1411020 | 0.808466 | 3.055329e-50 | -8.615850e-47 |
| Msa0150270 | Msa1416150 | 0.802151 | 6.429065e-49 | -8.615850e-47 |
| Msa0150270 | Msa1424290 | 0.803363 | 3.612781e-49 | -8.615850e-47 |
| Msa0150270 | Msa1427230 | 0.811515 | 6.736405e-51 | -8.615850e-47 |
| Msa0150270 | Msa1434350 | 0.803990 | 2.677061e-49 | -8.615850e-47 |
| Msa0150270 | Msa1439320 | 0.806758 | 7.039462e-50 | -8.615850e-47 |
| Msa0150270 | Msa1440370 | 0.803270 | 3.777481e-49 | -8.615850e-47 |
| Msa0150270 | Msa1440810 | 0.802224 | 6.210263e-49 | -8.615850e-47 |
| Msa0150270 | Msa1451620 | -0.806726 | 7.151691e-50 | -8.615850e-47 |
| Msa0150270 | Msa1460830 | 0.812395 | 4.332216e-51 | -8.615850e-47 |
| Msa0150270 | Msa1466540 | 0.831602 | 1.521144e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 54 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTAGACAAATTGAGATTT+AGG | 0.164907 | 1_4:-11534643 | Msa0150270:five_prime_UTR |
| GGTGCCTTTGGGATGCCTTA+TGG | 0.225125 | 1_4:-11534846 | Msa0150270:five_prime_UTR |
| CATAATTTGTGTTAAATATC+TGG | 0.231662 | 1_4:+11534338 | None:intergenic |
| TGTGTTTAAGGTAAAATTTA+TGG | 0.254008 | 1_4:-11534377 | Msa0150270:intron |
| TTAGGAAGCTTAGGCCATTT+TGG | 0.272077 | 1_4:+11534509 | None:intergenic |
| CCTAGACAAATTGAGATTTA+GGG | 0.290999 | 1_4:-11534642 | Msa0150270:five_prime_UTR |
| GTGTCCTTGGTGGGTGCCTT+TGG | 0.298783 | 1_4:-11534858 | Msa0150270:five_prime_UTR |
| AATTCGATTCAAATCTGATT+TGG | 0.320135 | 1_4:-11534994 | Msa0150270:five_prime_UTR |
| ACAAATTATGATTGGGCTCT+TGG | 0.345281 | 1_4:-11534325 | Msa0150270:CDS |
| TTAGCTAGTGTGTTTATGTT+TGG | 0.354407 | 1_4:-11534692 | Msa0150270:five_prime_UTR |
| ACCCTATCATGTATCCAAAA+TGG | 0.355033 | 1_4:-11534523 | Msa0150270:CDS |
| CTAGGATTAAGTCTCACTTC+TGG | 0.355710 | 1_4:+11534660 | None:intergenic |
| GATTTAGGGTGCTTATGAAT+TGG | 0.363776 | 1_4:-11534628 | Msa0150270:five_prime_UTR |
| TATTTAACACAAATTATGAT+TGG | 0.366884 | 1_4:-11534333 | Msa0150270:CDS |
| AGTTAGTAAGTTCTGCAAAA+TGG | 0.384552 | 1_4:-11534946 | Msa0150270:five_prime_UTR |
| TGTCCTTGGTGGGTGCCTTT+GGG | 0.399399 | 1_4:-11534857 | Msa0150270:five_prime_UTR |
| AATTGCTTATAAAACAGATT+AGG | 0.403921 | 1_4:+11534715 | None:intergenic |
| TAAATATCTGGTGATCTTCA+TGG | 0.407463 | 1_4:+11534350 | None:intergenic |
| GTGAAGTTGGCGAAGATCAT+TGG | 0.412110 | 1_4:-11534273 | Msa0150270:CDS |
| GGATTGGTAGCAGGGTAGTT+GGG | 0.427021 | 1_4:-11534572 | Msa0150270:five_prime_UTR |
| AGTAGGAGAGTTAGCTGGAT+TGG | 0.428137 | 1_4:-11534588 | Msa0150270:five_prime_UTR |
| ATTTAACACAAATTATGATT+GGG | 0.438388 | 1_4:-11534332 | Msa0150270:CDS |
| AAACTCACTTGGTTTAATCA+AGG | 0.450765 | 1_4:+11534783 | None:intergenic |
| GAGTTAGCTGGATTGGTAGC+AGG | 0.451512 | 1_4:-11534581 | Msa0150270:five_prime_UTR |
| CATCATCTTCAGCATGTACT+AGG | 0.452749 | 1_4:-11535027 | Msa0150270:five_prime_UTR |
| TAGGATTAAGTCTCACTTCT+GGG | 0.455308 | 1_4:+11534661 | None:intergenic |
| GAGAAATTCCCGAGTGAAGT+TGG | 0.457040 | 1_4:-11534286 | Msa0150270:CDS |
| TGGATTGGTAGCAGGGTAGT+TGG | 0.463259 | 1_4:-11534573 | Msa0150270:five_prime_UTR |
| TATTGTTATTACCAAGCGTC+AGG | 0.463749 | 1_4:+11534223 | None:intergenic |
| TGATCTTCGCCAACTTCACT+CGG | 0.479001 | 1_4:+11534277 | None:intergenic |
| CATTTATGAGAACAACTTGA+AGG | 0.482793 | 1_4:-11534471 | Msa0150270:intron |
| GTTTCTCTGTGTCTGCTGCT+AGG | 0.493524 | 1_4:-11535053 | None:intergenic |
| GGGATGCCTTATGGAGAGGA+TGG | 0.494569 | 1_4:-11534837 | Msa0150270:five_prime_UTR |
| AATAATCCATCCTCTCCATA+AGG | 0.516672 | 1_4:+11534831 | None:intergenic |
| CAGCTAACTCTCCTACTGTC+TGG | 0.517203 | 1_4:+11534594 | None:intergenic |
| TTAGTATCAAATCAAGATCA+AGG | 0.520178 | 1_4:-11534904 | Msa0150270:five_prime_UTR |
| CCCTAAATCTCAATTTGTCT+AGG | 0.530507 | 1_4:+11534642 | None:intergenic |
| AAGTTCTGCAAAATGGTGAT+TGG | 0.541266 | 1_4:-11534939 | Msa0150270:five_prime_UTR |
| AGATCAAGGTGCTTTAATTG+TGG | 0.544551 | 1_4:-11534890 | Msa0150270:five_prime_UTR |
| GAAGATCTAAGTGTCCTTGG+TGG | 0.549084 | 1_4:-11534868 | Msa0150270:five_prime_UTR |
| CTAGTACATGCTGAAGATGA+TGG | 0.550331 | 1_4:+11535028 | None:intergenic |
| ATAGACTGCATCCTGACGCT+TGG | 0.551860 | 1_4:-11534234 | Msa0150270:CDS |
| AGTTAGCTGGATTGGTAGCA+GGG | 0.553426 | 1_4:-11534580 | Msa0150270:five_prime_UTR |
| TGAGATTCTATAAACTCACT+TGG | 0.556872 | 1_4:+11534772 | None:intergenic |
| CAGTCTATAATCAATATACA+TGG | 0.558568 | 1_4:+11534249 | None:intergenic |
| GTGGAAGATCTAAGTGTCCT+TGG | 0.564140 | 1_4:-11534871 | Msa0150270:five_prime_UTR |
| GATTCAAATCTGATTTGGTG+TGG | 0.576402 | 1_4:-11534989 | Msa0150270:five_prime_UTR |
| AAGATCTAAGTGTCCTTGGT+GGG | 0.595755 | 1_4:-11534867 | Msa0150270:five_prime_UTR |
| CAGACAGTAGGAGAGTTAGC+TGG | 0.596658 | 1_4:-11534593 | Msa0150270:five_prime_UTR |
| CTTTGGGATGCCTTATGGAG+AGG | 0.614233 | 1_4:-11534841 | Msa0150270:five_prime_UTR |
| CATCCCAAAGGCACCCACCA+AGG | 0.621079 | 1_4:+11534854 | None:intergenic |
| GATCTTCGCCAACTTCACTC+GGG | 0.622921 | 1_4:+11534278 | None:intergenic |
| AATGCTGAAAGCCAGACAGT+AGG | 0.663301 | 1_4:-11534605 | Msa0150270:five_prime_UTR |
| CTCTCCATAAGGCATCCCAA+AGG | 0.664709 | 1_4:+11534842 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATATTTGTTTGTGTTTA+AGG | - | chr1_4:11534888-11534907 | Msa0150270:five_prime_UTR | 15.0% |
| !! | TATTTAACACAAATTATGAT+TGG | - | chr1_4:11534944-11534963 | Msa0150270:five_prime_UTR | 15.0% |
| !! | ATTTAACACAAATTATGATT+GGG | - | chr1_4:11534945-11534964 | Msa0150270:five_prime_UTR | 15.0% |
| !! | TTTATATTTGTTTGTGTTTA+AGG | - | chr1_4:11534888-11534907 | Msa0150270:five_prime_UTR | 15.0% |
| !! | TATTTAACACAAATTATGAT+TGG | - | chr1_4:11534944-11534963 | Msa0150270:five_prime_UTR | 15.0% |
| !! | ATTTAACACAAATTATGATT+GGG | - | chr1_4:11534945-11534964 | Msa0150270:five_prime_UTR | 15.0% |
| !! | AATTGCTTATAAAACAGATT+AGG | + | chr1_4:11534565-11534584 | None:intergenic | 20.0% |
| !!! | TGTGTTTAAGGTAAAATTTA+TGG | - | chr1_4:11534900-11534919 | Msa0150270:five_prime_UTR | 20.0% |
| !!! | CATAATTTGTGTTAAATATC+TGG | + | chr1_4:11534942-11534961 | None:intergenic | 20.0% |
| !! | AATTGCTTATAAAACAGATT+AGG | + | chr1_4:11534565-11534584 | None:intergenic | 20.0% |
| !!! | TGTGTTTAAGGTAAAATTTA+TGG | - | chr1_4:11534900-11534919 | Msa0150270:five_prime_UTR | 20.0% |
| !!! | CATAATTTGTGTTAAATATC+TGG | + | chr1_4:11534942-11534961 | None:intergenic | 20.0% |
| ! | AATTCGATTCAAATCTGATT+TGG | - | chr1_4:11534283-11534302 | Msa0150270:CDS | 25.0% |
| ! | TTAGTATCAAATCAAGATCA+AGG | - | chr1_4:11534373-11534392 | Msa0150270:intron | 25.0% |
| !!! | ATGTAGTGTTTCTTTGTTTT+AGG | + | chr1_4:11534789-11534808 | None:intergenic | 25.0% |
| ! | CAGTCTATAATCAATATACA+TGG | + | chr1_4:11535031-11535050 | None:intergenic | 25.0% |
| ! | AATTCGATTCAAATCTGATT+TGG | - | chr1_4:11534283-11534302 | Msa0150270:CDS | 25.0% |
| ! | TTAGTATCAAATCAAGATCA+AGG | - | chr1_4:11534373-11534392 | Msa0150270:intron | 25.0% |
| !!! | ATGTAGTGTTTCTTTGTTTT+AGG | + | chr1_4:11534789-11534808 | None:intergenic | 25.0% |
| ! | CAGTCTATAATCAATATACA+TGG | + | chr1_4:11535031-11535050 | None:intergenic | 25.0% |
| AGTTAGTAAGTTCTGCAAAA+TGG | - | chr1_4:11534331-11534350 | Msa0150270:CDS | 30.0% | |
| AAACTCACTTGGTTTAATCA+AGG | + | chr1_4:11534497-11534516 | None:intergenic | 30.0% | |
| TGAGATTCTATAAACTCACT+TGG | + | chr1_4:11534508-11534527 | None:intergenic | 30.0% | |
| TTAGCTAGTGTGTTTATGTT+TGG | - | chr1_4:11534585-11534604 | Msa0150270:five_prime_UTR | 30.0% | |
| TCCTAGACAAATTGAGATTT+AGG | - | chr1_4:11534634-11534653 | Msa0150270:five_prime_UTR | 30.0% | |
| CCTAGACAAATTGAGATTTA+GGG | - | chr1_4:11534635-11534654 | Msa0150270:five_prime_UTR | 30.0% | |
| !!! | TTCTTTGTTTTAGGAAGCTT+AGG | + | chr1_4:11534780-11534799 | None:intergenic | 30.0% |
| CATTTATGAGAACAACTTGA+AGG | - | chr1_4:11534806-11534825 | Msa0150270:five_prime_UTR | 30.0% | |
| TAAATATCTGGTGATCTTCA+TGG | + | chr1_4:11534930-11534949 | None:intergenic | 30.0% | |
| AGTTAGTAAGTTCTGCAAAA+TGG | - | chr1_4:11534331-11534350 | Msa0150270:CDS | 30.0% | |
| AAACTCACTTGGTTTAATCA+AGG | + | chr1_4:11534497-11534516 | None:intergenic | 30.0% | |
| TGAGATTCTATAAACTCACT+TGG | + | chr1_4:11534508-11534527 | None:intergenic | 30.0% | |
| TTAGCTAGTGTGTTTATGTT+TGG | - | chr1_4:11534585-11534604 | Msa0150270:five_prime_UTR | 30.0% | |
| TCCTAGACAAATTGAGATTT+AGG | - | chr1_4:11534634-11534653 | Msa0150270:five_prime_UTR | 30.0% | |
| CCTAGACAAATTGAGATTTA+GGG | - | chr1_4:11534635-11534654 | Msa0150270:five_prime_UTR | 30.0% | |
| !!! | TTCTTTGTTTTAGGAAGCTT+AGG | + | chr1_4:11534780-11534799 | None:intergenic | 30.0% |
| CATTTATGAGAACAACTTGA+AGG | - | chr1_4:11534806-11534825 | Msa0150270:five_prime_UTR | 30.0% | |
| TAAATATCTGGTGATCTTCA+TGG | + | chr1_4:11534930-11534949 | None:intergenic | 30.0% | |
| !! | GATTCAAATCTGATTTGGTG+TGG | - | chr1_4:11534288-11534307 | Msa0150270:CDS | 35.0% |
| AAGTTCTGCAAAATGGTGAT+TGG | - | chr1_4:11534338-11534357 | Msa0150270:CDS | 35.0% | |
| ! | AGATCAAGGTGCTTTAATTG+TGG | - | chr1_4:11534387-11534406 | Msa0150270:intron | 35.0% |
| AATAATCCATCCTCTCCATA+AGG | + | chr1_4:11534449-11534468 | None:intergenic | 35.0% | |
| TAGGATTAAGTCTCACTTCT+GGG | + | chr1_4:11534619-11534638 | None:intergenic | 35.0% | |
| CCCTAAATCTCAATTTGTCT+AGG | + | chr1_4:11534638-11534657 | None:intergenic | 35.0% | |
| ! | GATTTAGGGTGCTTATGAAT+TGG | - | chr1_4:11534649-11534668 | Msa0150270:five_prime_UTR | 35.0% |
| ACCCTATCATGTATCCAAAA+TGG | - | chr1_4:11534754-11534773 | Msa0150270:five_prime_UTR | 35.0% | |
| !! | GCCATTTTGGATACATGATA+GGG | + | chr1_4:11534758-11534777 | None:intergenic | 35.0% |
| ACAAATTATGATTGGGCTCT+TGG | - | chr1_4:11534952-11534971 | Msa0150270:five_prime_UTR | 35.0% | |
| !! | GATTCAAATCTGATTTGGTG+TGG | - | chr1_4:11534288-11534307 | Msa0150270:CDS | 35.0% |
| AAGTTCTGCAAAATGGTGAT+TGG | - | chr1_4:11534338-11534357 | Msa0150270:CDS | 35.0% | |
| ! | AGATCAAGGTGCTTTAATTG+TGG | - | chr1_4:11534387-11534406 | Msa0150270:intron | 35.0% |
| AATAATCCATCCTCTCCATA+AGG | + | chr1_4:11534449-11534468 | None:intergenic | 35.0% | |
| TAGGATTAAGTCTCACTTCT+GGG | + | chr1_4:11534619-11534638 | None:intergenic | 35.0% | |
| CCCTAAATCTCAATTTGTCT+AGG | + | chr1_4:11534638-11534657 | None:intergenic | 35.0% | |
| ! | GATTTAGGGTGCTTATGAAT+TGG | - | chr1_4:11534649-11534668 | Msa0150270:five_prime_UTR | 35.0% |
| ACCCTATCATGTATCCAAAA+TGG | - | chr1_4:11534754-11534773 | Msa0150270:five_prime_UTR | 35.0% | |
| !! | GCCATTTTGGATACATGATA+GGG | + | chr1_4:11534758-11534777 | None:intergenic | 35.0% |
| ACAAATTATGATTGGGCTCT+TGG | - | chr1_4:11534952-11534971 | Msa0150270:five_prime_UTR | 35.0% | |
| CTAGTACATGCTGAAGATGA+TGG | + | chr1_4:11534252-11534271 | None:intergenic | 40.0% | |
| CATCATCTTCAGCATGTACT+AGG | - | chr1_4:11534250-11534269 | Msa0150270:CDS | 40.0% | |
| AAGATCTAAGTGTCCTTGGT+GGG | - | chr1_4:11534410-11534429 | Msa0150270:intron | 40.0% | |
| CTAGGATTAAGTCTCACTTC+TGG | + | chr1_4:11534620-11534639 | None:intergenic | 40.0% | |
| !! | GGCCATTTTGGATACATGAT+AGG | + | chr1_4:11534759-11534778 | None:intergenic | 40.0% |
| ! | TTAGGAAGCTTAGGCCATTT+TGG | + | chr1_4:11534771-11534790 | None:intergenic | 40.0% |
| CTAGTACATGCTGAAGATGA+TGG | + | chr1_4:11534252-11534271 | None:intergenic | 40.0% | |
| CATCATCTTCAGCATGTACT+AGG | - | chr1_4:11534250-11534269 | Msa0150270:CDS | 40.0% | |
| AAGATCTAAGTGTCCTTGGT+GGG | - | chr1_4:11534410-11534429 | Msa0150270:intron | 40.0% | |
| CTAGGATTAAGTCTCACTTC+TGG | + | chr1_4:11534620-11534639 | None:intergenic | 40.0% | |
| !! | GGCCATTTTGGATACATGAT+AGG | + | chr1_4:11534759-11534778 | None:intergenic | 40.0% |
| ! | TTAGGAAGCTTAGGCCATTT+TGG | + | chr1_4:11534771-11534790 | None:intergenic | 40.0% |
| GTGGAAGATCTAAGTGTCCT+TGG | - | chr1_4:11534406-11534425 | Msa0150270:intron | 45.0% | |
| GAAGATCTAAGTGTCCTTGG+TGG | - | chr1_4:11534409-11534428 | Msa0150270:intron | 45.0% | |
| AATGCTGAAAGCCAGACAGT+AGG | - | chr1_4:11534672-11534691 | Msa0150270:five_prime_UTR | 45.0% | |
| AGTAGGAGAGTTAGCTGGAT+TGG | - | chr1_4:11534689-11534708 | Msa0150270:five_prime_UTR | 45.0% | |
| !! | AGTTAGCTGGATTGGTAGCA+GGG | - | chr1_4:11534697-11534716 | Msa0150270:five_prime_UTR | 45.0% |
| GAGAAATTCCCGAGTGAAGT+TGG | - | chr1_4:11534991-11535010 | Msa0150270:five_prime_UTR | 45.0% | |
| TGATCTTCGCCAACTTCACT+CGG | + | chr1_4:11535003-11535022 | None:intergenic | 45.0% | |
| GTGAAGTTGGCGAAGATCAT+TGG | - | chr1_4:11535004-11535023 | Msa0150270:five_prime_UTR | 45.0% | |
| GTGGAAGATCTAAGTGTCCT+TGG | - | chr1_4:11534406-11534425 | Msa0150270:intron | 45.0% | |
| GAAGATCTAAGTGTCCTTGG+TGG | - | chr1_4:11534409-11534428 | Msa0150270:intron | 45.0% | |
| AATGCTGAAAGCCAGACAGT+AGG | - | chr1_4:11534672-11534691 | Msa0150270:five_prime_UTR | 45.0% | |
| AGTAGGAGAGTTAGCTGGAT+TGG | - | chr1_4:11534689-11534708 | Msa0150270:five_prime_UTR | 45.0% | |
| !! | AGTTAGCTGGATTGGTAGCA+GGG | - | chr1_4:11534697-11534716 | Msa0150270:five_prime_UTR | 45.0% |
| GAGAAATTCCCGAGTGAAGT+TGG | - | chr1_4:11534991-11535010 | Msa0150270:five_prime_UTR | 45.0% | |
| TGATCTTCGCCAACTTCACT+CGG | + | chr1_4:11535003-11535022 | None:intergenic | 45.0% | |
| GTGAAGTTGGCGAAGATCAT+TGG | - | chr1_4:11535004-11535023 | Msa0150270:five_prime_UTR | 45.0% | |
| ! | CTCTCCATAAGGCATCCCAA+AGG | + | chr1_4:11534438-11534457 | None:intergenic | 50.0% |
| !! | CTTTGGGATGCCTTATGGAG+AGG | - | chr1_4:11534436-11534455 | Msa0150270:intron | 50.0% |
| CAGCTAACTCTCCTACTGTC+TGG | + | chr1_4:11534686-11534705 | None:intergenic | 50.0% | |
| CAGACAGTAGGAGAGTTAGC+TGG | - | chr1_4:11534684-11534703 | Msa0150270:five_prime_UTR | 50.0% | |
| !! | GAGTTAGCTGGATTGGTAGC+AGG | - | chr1_4:11534696-11534715 | Msa0150270:five_prime_UTR | 50.0% |
| !! | TGGATTGGTAGCAGGGTAGT+TGG | - | chr1_4:11534704-11534723 | Msa0150270:five_prime_UTR | 50.0% |
| ! | GGATTGGTAGCAGGGTAGTT+GGG | - | chr1_4:11534705-11534724 | Msa0150270:five_prime_UTR | 50.0% |
| GATCTTCGCCAACTTCACTC+GGG | + | chr1_4:11535002-11535021 | None:intergenic | 50.0% | |
| ATAGACTGCATCCTGACGCT+TGG | - | chr1_4:11535043-11535062 | Msa0150270:five_prime_UTR | 50.0% | |
| ! | CTCTCCATAAGGCATCCCAA+AGG | + | chr1_4:11534438-11534457 | None:intergenic | 50.0% |
| !! | CTTTGGGATGCCTTATGGAG+AGG | - | chr1_4:11534436-11534455 | Msa0150270:intron | 50.0% |
| CAGCTAACTCTCCTACTGTC+TGG | + | chr1_4:11534686-11534705 | None:intergenic | 50.0% | |
| CAGACAGTAGGAGAGTTAGC+TGG | - | chr1_4:11534684-11534703 | Msa0150270:five_prime_UTR | 50.0% | |
| !! | GAGTTAGCTGGATTGGTAGC+AGG | - | chr1_4:11534696-11534715 | Msa0150270:five_prime_UTR | 50.0% |
| !! | TGGATTGGTAGCAGGGTAGT+TGG | - | chr1_4:11534704-11534723 | Msa0150270:five_prime_UTR | 50.0% |
| ! | GGATTGGTAGCAGGGTAGTT+GGG | - | chr1_4:11534705-11534724 | Msa0150270:five_prime_UTR | 50.0% |
| GATCTTCGCCAACTTCACTC+GGG | + | chr1_4:11535002-11535021 | None:intergenic | 50.0% | |
| ATAGACTGCATCCTGACGCT+TGG | - | chr1_4:11535043-11535062 | Msa0150270:five_prime_UTR | 50.0% | |
| ! | TGTCCTTGGTGGGTGCCTTT+GGG | - | chr1_4:11534420-11534439 | Msa0150270:intron | 55.0% |
| !! | GGTGCCTTTGGGATGCCTTA+TGG | - | chr1_4:11534431-11534450 | Msa0150270:intron | 55.0% |
| GGGATGCCTTATGGAGAGGA+TGG | - | chr1_4:11534440-11534459 | Msa0150270:intron | 55.0% | |
| ! | TGTCCTTGGTGGGTGCCTTT+GGG | - | chr1_4:11534420-11534439 | Msa0150270:intron | 55.0% |
| !! | GGTGCCTTTGGGATGCCTTA+TGG | - | chr1_4:11534431-11534450 | Msa0150270:intron | 55.0% |
| GGGATGCCTTATGGAGAGGA+TGG | - | chr1_4:11534440-11534459 | Msa0150270:intron | 55.0% | |
| ! | GTGTCCTTGGTGGGTGCCTT+TGG | - | chr1_4:11534419-11534438 | Msa0150270:intron | 60.0% |
| !! | CATCCCAAAGGCACCCACCA+AGG | + | chr1_4:11534426-11534445 | None:intergenic | 60.0% |
| ! | GTGTCCTTGGTGGGTGCCTT+TGG | - | chr1_4:11534419-11534438 | Msa0150270:intron | 60.0% |
| !! | CATCCCAAAGGCACCCACCA+AGG | + | chr1_4:11534426-11534445 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 11534231 | 11535068 | 11534231 | ID=Msa0150270;Name=Msa0150270 |
| chr1_4 | mRNA | 11534231 | 11535068 | 11534231 | ID=Msa0150270-mRNA-1;Parent=Msa0150270;Name=Msa0150270-mRNA-1;_AED=0.20;_eAED=0.20;_QI=519|1|0.5|1|1|1|2|0|78 |
| chr1_4 | exon | 11534231 | 11534389 | 11534231 | ID=Msa0150270-mRNA-1:exon:4802;Parent=Msa0150270-mRNA-1 |
| chr1_4 | exon | 11534472 | 11535068 | 11534472 | ID=Msa0150270-mRNA-1:exon:4801;Parent=Msa0150270-mRNA-1 |
| chr1_4 | five_prime_UTR | 11534550 | 11535068 | 11534550 | ID=Msa0150270-mRNA-1:five_prime_utr;Parent=Msa0150270-mRNA-1 |
| chr1_4 | CDS | 11534472 | 11534549 | 11534472 | ID=Msa0150270-mRNA-1:cds;Parent=Msa0150270-mRNA-1 |
| chr1_4 | CDS | 11534231 | 11534389 | 11534231 | ID=Msa0150270-mRNA-1:cds;Parent=Msa0150270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
