Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299330 | XP_003596904.1 | 85.217 | 115 | 14 | 1 | 1 | 112 | 136 | 250 | 1.48e-50 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299330 | G7IRF3 | 85.217 | 115 | 14 | 1 | 1 | 112 | 136 | 250 | 7.07e-51 | 172 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008410 | Msa0299330 | 0.819821 | 9.497002e-53 | -8.615850e-47 |
| Msa0055150 | Msa0299330 | 0.808231 | 3.428475e-50 | -8.615850e-47 |
| Msa0057140 | Msa0299330 | 0.825363 | 4.883305e-54 | -8.615850e-47 |
| Msa0076000 | Msa0299330 | 0.818167 | 2.257120e-52 | -8.615850e-47 |
| Msa0135420 | Msa0299330 | 0.807080 | 6.018160e-50 | -8.615850e-47 |
| Msa0198530 | Msa0299330 | 0.801964 | 7.022478e-49 | -8.615850e-47 |
| Msa0239940 | Msa0299330 | 0.801055 | 1.078512e-48 | -8.615850e-47 |
| Msa0245850 | Msa0299330 | 0.810566 | 1.081334e-50 | -8.615850e-47 |
| Msa0259270 | Msa0299330 | 0.818710 | 1.700916e-52 | -8.615850e-47 |
| Msa0259370 | Msa0299330 | 0.802088 | 6.621308e-49 | -8.615850e-47 |
| Msa0267870 | Msa0299330 | 0.809134 | 2.198593e-50 | -8.615850e-47 |
| Msa0278790 | Msa0299330 | 0.804740 | 1.868041e-49 | -8.615850e-47 |
| Msa0295590 | Msa0299330 | 0.814933 | 1.196661e-51 | -8.615850e-47 |
| Msa0299330 | Msa0324240 | 0.825002 | 5.943480e-54 | -8.615850e-47 |
| Msa0299330 | Msa0467780 | 0.800965 | 1.125131e-48 | -8.615850e-47 |
| Msa0299330 | Msa0474700 | 0.800954 | 1.130885e-48 | -8.615850e-47 |
| Msa0299330 | Msa0511490 | 0.816098 | 6.589085e-52 | -8.615850e-47 |
| Msa0299330 | Msa0514180 | 0.804239 | 2.376962e-49 | -8.615850e-47 |
| Msa0299330 | Msa0546570 | 0.801837 | 7.458095e-49 | -8.615850e-47 |
| Msa0299330 | Msa0556790 | 0.803455 | 3.457067e-49 | -8.615850e-47 |
| Msa0299330 | Msa0556860 | 0.807536 | 4.817276e-50 | -8.615850e-47 |
| Msa0299330 | Msa0558230 | 0.824166 | 9.349310e-54 | -8.615850e-47 |
| Msa0299330 | Msa0610500 | 0.804787 | 1.826629e-49 | -8.615850e-47 |
| Msa0299330 | Msa0612960 | 0.802038 | 6.781913e-49 | -8.615850e-47 |
| Msa0299330 | Msa0619070 | 0.805891 | 1.072592e-49 | -8.615850e-47 |
| Msa0299330 | Msa0628290 | 0.801879 | 7.310242e-49 | -8.615850e-47 |
| Msa0299330 | Msa0641140 | 0.811709 | 6.112274e-51 | -8.615850e-47 |
| Msa0299330 | Msa0651150 | 0.805653 | 1.203115e-49 | -8.615850e-47 |
| Msa0299330 | Msa0694840 | 0.815266 | 1.009559e-51 | -8.615850e-47 |
| Msa0299330 | Msa0724150 | 0.811816 | 5.794962e-51 | -8.615850e-47 |
| Msa0299330 | Msa0726080 | 0.807249 | 5.543633e-50 | -8.615850e-47 |
| Msa0299330 | Msa0726860 | 0.807837 | 4.158275e-50 | -8.615850e-47 |
| Msa0299330 | Msa0744100 | 0.813624 | 2.329734e-51 | -8.615850e-47 |
| Msa0299330 | Msa0762250 | 0.804307 | 2.299844e-49 | -8.615850e-47 |
| Msa0299330 | Msa0814320 | 0.802238 | 6.166899e-49 | -8.615850e-47 |
| Msa0299330 | Msa0820250 | 0.830139 | 3.474021e-55 | -8.615850e-47 |
| Msa0299330 | Msa0825270 | 0.810459 | 1.140534e-50 | -8.615850e-47 |
| Msa0299330 | Msa0846230 | 0.801500 | 8.743948e-49 | -8.615850e-47 |
| Msa0299330 | Msa0849200 | 0.805689 | 1.182255e-49 | -8.615850e-47 |
| Msa0299330 | Msa0863370 | 0.805562 | 1.257321e-49 | -8.615850e-47 |
| Msa0299330 | Msa0881580 | 0.820917 | 5.322621e-53 | -8.615850e-47 |
| Msa0299330 | Msa0888940 | 0.811357 | 7.291801e-51 | -8.615850e-47 |
| Msa0299330 | Msa0899350 | 0.813388 | 2.625629e-51 | -8.615850e-47 |
| Msa0299330 | Msa0906690 | 0.800251 | 1.572978e-48 | -8.615850e-47 |
| Msa0299330 | Msa0965020 | 0.821794 | 3.339921e-53 | -8.615850e-47 |
| Msa0299330 | Msa0967370 | 0.801595 | 8.360398e-49 | -8.615850e-47 |
| Msa0299330 | Msa0980940 | 0.812406 | 4.307619e-51 | -8.615850e-47 |
| Msa0299330 | Msa1031770 | 0.813699 | 2.242552e-51 | -8.615850e-47 |
| Msa0299330 | Msa1040890 | 0.802128 | 6.497254e-49 | -8.615850e-47 |
| Msa0299330 | Msa1050420 | 0.800151 | 1.648598e-48 | -8.615850e-47 |
| Msa0299330 | Msa1125550 | 0.801017 | 1.098126e-48 | -8.615850e-47 |
| Msa0299330 | Msa1214880 | 0.808728 | 2.684965e-50 | -8.615850e-47 |
| Msa0299330 | Msa1214890 | 0.812163 | 4.867193e-51 | -8.615850e-47 |
| Msa0299330 | Msa1254710 | 0.829256 | 5.698048e-55 | -8.615850e-47 |
| Msa0299330 | Msa1331920 | 0.807156 | 5.801194e-50 | -8.615850e-47 |
| Msa0299330 | Msa1371240 | 0.811759 | 5.961707e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299330 | MtrunA17_Chr2g0322111 | 85.217 | 115 | 14 | 1 | 1 | 112 | 136 | 250 | 1.36e-54 | 172 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0299330 | AT5G22080.1 | 72.174 | 115 | 29 | 1 | 1 | 112 | 132 | 246 | 3.36e-46 | 151 |
| Msa0299330 | AT5G22080.2 | 60.000 | 115 | 25 | 2 | 1 | 112 | 132 | 228 | 8.94e-31 | 111 |
Find 40 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTATGGCTGTAGAACAAAA+AGG | 0.310225 | 2_3:-54064559 | Msa0299330:intron |
| GGATCTTCTGTCTTGAGCTT+AGG | 0.314700 | 2_3:+54064523 | None:intergenic |
| GATCTTCTGTCTTGAGCTTA+GGG | 0.328340 | 2_3:+54064524 | None:intergenic |
| AGGAGGAACAGAAAGAAATA+TGG | 0.344165 | 2_3:-54066393 | Msa0299330:CDS |
| CCTATGTATCAATCAGTACT+AGG | 0.345510 | 2_3:+54064304 | None:intergenic |
| CTTCTGTCTAACCTAAAATC+TGG | 0.393570 | 2_3:+54064191 | None:intergenic |
| TTCTGAACGTAGGATTTGTT+AGG | 0.395154 | 2_3:+54064502 | None:intergenic |
| CGATGTAAAATCATGGATAT+AGG | 0.397663 | 2_3:+54064107 | None:intergenic |
| TTGTAATGATGTTTATCTCT+AGG | 0.406494 | 2_3:-54064384 | Msa0299330:CDS |
| AATCATGGATATAGGTTACC+TGG | 0.453690 | 2_3:+54064115 | None:intergenic |
| GGGAAGGAACAAGAGAAAAG+AGG | 0.454577 | 2_3:-54066342 | Msa0299330:CDS |
| TGTAATGATGTTTATCTCTA+GGG | 0.463926 | 2_3:-54064383 | Msa0299330:CDS |
| AGGCTTGGGTGTTTGGTCAC+AGG | 0.472092 | 2_3:-54064467 | Msa0299330:CDS |
| GCGTGAACATGAAGAGGAAT+GGG | 0.499626 | 2_3:-54066362 | Msa0299330:CDS |
| CCTAGTACTGATTGATACAT+AGG | 0.504307 | 2_3:-54064304 | Msa0299330:three_prime_UTR |
| GGAAGGAACAAGAGAAAAGA+GGG | 0.509568 | 2_3:-54066341 | Msa0299330:intron |
| AGCGTGAACATGAAGAGGAA+TGG | 0.512830 | 2_3:-54066363 | Msa0299330:CDS |
| TCACAGGCGATCTATCCAAC+AGG | 0.517687 | 2_3:-54064451 | Msa0299330:CDS |
| TCTGGCTCACTGCAGATGAC+TGG | 0.520294 | 2_3:+54064209 | None:intergenic |
| GCAATGACGATGTAAAATCA+TGG | 0.520617 | 2_3:+54064100 | None:intergenic |
| TAGGGTCATGAGCATCTCAA+TGG | 0.541342 | 2_3:-54064365 | Msa0299330:CDS |
| CAATATCAAACTGACACAAA+GGG | 0.542607 | 2_3:+54064404 | None:intergenic |
| AAGTTTACATGGACTCCTGT+TGG | 0.546258 | 2_3:+54064436 | None:intergenic |
| GGCGCATGGCTAAGTTTACA+TGG | 0.563207 | 2_3:+54064425 | None:intergenic |
| AAGAAAGCGTGAACATGAAG+AGG | 0.566688 | 2_3:-54066368 | Msa0299330:CDS |
| CTATGTATCAATCAGTACTA+GGG | 0.578778 | 2_3:+54064305 | None:intergenic |
| ACAATATCAAACTGACACAA+AGG | 0.582509 | 2_3:+54064403 | None:intergenic |
| TGATAAGCAATATGAACAGT+CGG | 0.586242 | 2_3:-54066955 | Msa0299330:CDS |
| AAGTTGTATTGCCTTTGCAA+AGG | 0.587552 | 2_3:-54064270 | Msa0299330:three_prime_UTR |
| ATCATGGATATAGGTTACCT+GGG | 0.599095 | 2_3:+54064116 | None:intergenic |
| CCGTTTAATGTAAAATACCC+AGG | 0.605202 | 2_3:-54064133 | Msa0299330:three_prime_UTR |
| AAACTGACACAAAGGGCGCA+TGG | 0.611823 | 2_3:+54064411 | None:intergenic |
| ATCTTCTGTCTTGAGCTTAG+GGG | 0.622536 | 2_3:+54064525 | None:intergenic |
| AGTACTGATTGATACATAGG+AGG | 0.632795 | 2_3:-54064301 | Msa0299330:three_prime_UTR |
| ATGTAGATATCCGAGGAGGA+AGG | 0.639180 | 2_3:-54066433 | Msa0299330:intron |
| AAACGGTAACTAAATCAGAA+CGG | 0.650885 | 2_3:+54064150 | None:intergenic |
| ACAGTCGGAAGAATTCAAGC+AGG | 0.661666 | 2_3:-54066940 | Msa0299330:CDS |
| AAATATTATGTAGATATCCG+AGG | 0.665580 | 2_3:-54066440 | Msa0299330:intron |
| GAACATGAAGAGGAATGGGA+AGG | 0.666125 | 2_3:-54066358 | Msa0299330:CDS |
| TATTATGTAGATATCCGAGG+AGG | 0.732877 | 2_3:-54066437 | Msa0299330:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATATTTAATAAGCTAAA+AGG | + | chr2_3:54064597-54064616 | None:intergenic | 10.0% |
| !! | TATAAAATGAAGTTTAAATA+TGG | + | chr2_3:54064746-54064765 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAAAACACT+AGG | + | chr2_3:54065506-54065525 | None:intergenic | 10.0% |
| !!! | TTAAGAGTGAATATTAATTT+TGG | - | chr2_3:54064800-54064819 | Msa0299330:intron | 15.0% |
| !!! | TATACGTTTTAAAATTTTAG+AGG | - | chr2_3:54065265-54065284 | Msa0299330:intron | 15.0% |
| !!! | ATACGTTTTAAAATTTTAGA+GGG | - | chr2_3:54065266-54065285 | Msa0299330:intron | 15.0% |
| !!! | ACATTTCTAGAAATAATTTT+GGG | - | chr2_3:54065570-54065589 | Msa0299330:intron | 15.0% |
| !!! | TTTATATTTTGTTTGTTACA+TGG | - | chr2_3:54065596-54065615 | Msa0299330:intron | 15.0% |
| !!! | TCTCATTTTATGAAATTTAT+TGG | + | chr2_3:54066060-54066079 | None:intergenic | 15.0% |
| !!! | AAATATGTTTTAAATTCTGT+TGG | - | chr2_3:54066249-54066268 | Msa0299330:intron | 15.0% |
| !! | AACTATTAACAGAAAAAGAA+TGG | - | chr2_3:54064152-54064171 | Msa0299330:three_prime_UTR | 20.0% |
| !! | CATTAAAAATTCTGTTATTG+TGG | - | chr2_3:54064405-54064424 | Msa0299330:CDS | 20.0% |
| !! | TCTGTTTATCTATGTAAATT+TGG | - | chr2_3:54064530-54064549 | Msa0299330:CDS | 20.0% |
| !! | CATAGAACATAAATATCATT+TGG | + | chr2_3:54064877-54064896 | None:intergenic | 20.0% |
| !! | CAGAAAAATATTTGAATTGA+AGG | - | chr2_3:54064980-54064999 | Msa0299330:intron | 20.0% |
| !!! | ATGATTTTCTTATGAATCAT+AGG | - | chr2_3:54065081-54065100 | Msa0299330:intron | 20.0% |
| !!! | TTTTTTTTTGTGACAAAAGT+TGG | - | chr2_3:54065146-54065165 | Msa0299330:intron | 20.0% |
| !!! | CACATTTCTAGAAATAATTT+TGG | - | chr2_3:54065569-54065588 | Msa0299330:intron | 20.0% |
| !!! | AAGTTATCTAAAATCATTCT+TGG | + | chr2_3:54065777-54065796 | None:intergenic | 20.0% |
| !! | ATTTCAGTACTAAATAAAGT+TGG | + | chr2_3:54065842-54065861 | None:intergenic | 20.0% |
| !!! | GTTTTTATGTAATCATCAAT+AGG | - | chr2_3:54065944-54065963 | Msa0299330:intron | 20.0% |
| !!! | GTTTTTATGTAATCATCAAT+AGG | - | chr2_3:54065944-54065963 | Msa0299330:intron | 20.0% |
| !!! | AATTCATCCATATATTTTGA+CGG | + | chr2_3:54066300-54066319 | None:intergenic | 20.0% |
| !!! | AATATCAATCAGTTTTCATT+TGG | + | chr2_3:54066720-54066739 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAACCTTTGCAA+AGG | + | chr2_3:54066792-54066811 | None:intergenic | 20.0% |
| ! | TATTAACAGAAAAAGAATGG+AGG | - | chr2_3:54064155-54064174 | Msa0299330:three_prime_UTR | 25.0% |
| !!! | ACATGATGATCATTTTTACT+AGG | - | chr2_3:54064320-54064339 | Msa0299330:exon | 25.0% |
| ! | AAATATTATGTAGATATCCG+AGG | - | chr2_3:54064608-54064627 | Msa0299330:intron | 25.0% |
| ! | AGCTTAGTTATAGATTTCAT+AGG | + | chr2_3:54064833-54064852 | None:intergenic | 25.0% |
| ! | TAATCATGGTGGTAATATTT+CGG | - | chr2_3:54065107-54065126 | Msa0299330:intron | 25.0% |
| ! | TTCAATTAACCTACAAGAAT+GGG | + | chr2_3:54065188-54065207 | None:intergenic | 25.0% |
| ! | ATTCAATTAACCTACAAGAA+TGG | + | chr2_3:54065189-54065208 | None:intergenic | 25.0% |
| !!! | TTTTAGAAAACTGATCATGT+AGG | + | chr2_3:54065329-54065348 | None:intergenic | 25.0% |
| ! | CATAGTGGTAAAAATTAACA+TGG | - | chr2_3:54065390-54065409 | Msa0299330:intron | 25.0% |
| !! | TTATCTAAAATCATTCTTGG+CGG | + | chr2_3:54065774-54065793 | None:intergenic | 25.0% |
| ! | CATTCCATTATTAGAATAAC+TGG | - | chr2_3:54065864-54065883 | Msa0299330:intron | 25.0% |
| ! | CAGTCTAAAAGTAATCAAAA+TGG | - | chr2_3:54066185-54066204 | Msa0299330:intron | 25.0% |
| !! | CTAACATTACGTTTTTGTTA+TGG | - | chr2_3:54066473-54066492 | Msa0299330:intron | 25.0% |
| ! | TTGTAATGATGTTTATCTCT+AGG | - | chr2_3:54066664-54066683 | Msa0299330:intron | 25.0% |
| ! | TGTAATGATGTTTATCTCTA+GGG | - | chr2_3:54066665-54066684 | Msa0299330:intron | 25.0% |
| TGATAAGCAATATGAACAGT+CGG | - | chr2_3:54064093-54064112 | Msa0299330:three_prime_UTR | 30.0% | |
| GAGAAGAAAAATGCAAATGA+GGG | - | chr2_3:54064177-54064196 | Msa0299330:three_prime_UTR | 30.0% | |
| TTCCTAAAATGACAGTGATT+AGG | - | chr2_3:54064345-54064364 | Msa0299330:CDS | 30.0% | |
| !! | GTGATTAGGTGCTTTTTAAA+AGG | - | chr2_3:54064359-54064378 | Msa0299330:CDS | 30.0% |
| !! | CTTTTTAAAAGGTCTAGCTT+TGG | - | chr2_3:54064370-54064389 | Msa0299330:CDS | 30.0% |
| ! | CATGATGTTTTGCCAAATTT+TGG | - | chr2_3:54064460-54064479 | Msa0299330:CDS | 30.0% |
| !! | TGTTTTGCCAAATTTTGGTA+TGG | - | chr2_3:54064465-54064484 | Msa0299330:CDS | 30.0% |
| !!! | AAAGAGCATTTTAGTTTGCA+AGG | + | chr2_3:54065031-54065050 | None:intergenic | 30.0% |
| CATAAAATTGAAATCAGCCT+TGG | + | chr2_3:54065064-54065083 | None:intergenic | 30.0% | |
| TGAATCATAGGTACTAATCA+TGG | - | chr2_3:54065093-54065112 | Msa0299330:intron | 30.0% | |
| AATCATGGTGGTAATATTTC+GGG | - | chr2_3:54065108-54065127 | Msa0299330:intron | 30.0% | |
| !!! | CGTTTTAAAATTTTAGAGGG+CGG | - | chr2_3:54065269-54065288 | Msa0299330:intron | 30.0% |
| !!! | GTTTTAAAATTTTAGAGGGC+GGG | - | chr2_3:54065270-54065289 | Msa0299330:intron | 30.0% |
| AATATCACTACTTTGCATAG+TGG | - | chr2_3:54065375-54065394 | Msa0299330:intron | 30.0% | |
| !!! | ATAGAGAGATTCCTTTTTTC+AGG | + | chr2_3:54065445-54065464 | None:intergenic | 30.0% |
| TTTCTTGCAACAAATACACT+AGG | + | chr2_3:54065543-54065562 | None:intergenic | 30.0% | |
| TGATGCAAACAATGAAAATG+AGG | + | chr2_3:54065672-54065691 | None:intergenic | 30.0% | |
| ! | CATTTTCATTGTTTGCATCA+AGG | - | chr2_3:54065672-54065691 | Msa0299330:intron | 30.0% |
| AAAATTCATTCACGCTTCAT+GGG | + | chr2_3:54065715-54065734 | None:intergenic | 30.0% | |
| AAAAATTCATTCACGCTTCA+TGG | + | chr2_3:54065716-54065735 | None:intergenic | 30.0% | |
| ! | TATCTAAAATCATTCTTGGC+GGG | + | chr2_3:54065773-54065792 | None:intergenic | 30.0% |
| TCCATTATTAGAATAACTGG+AGG | - | chr2_3:54065867-54065886 | Msa0299330:intron | 30.0% | |
| TCCTCCAGTTATTCTAATAA+TGG | + | chr2_3:54065871-54065890 | None:intergenic | 30.0% | |
| ATTATTAGAATAACTGGAGG+AGG | - | chr2_3:54065870-54065889 | Msa0299330:intron | 30.0% | |
| ATCATCAATAGGAAACTACA+AGG | - | chr2_3:54065955-54065974 | Msa0299330:intron | 30.0% | |
| ATCATCAATAGGAAACTACA+AGG | - | chr2_3:54065955-54065974 | Msa0299330:intron | 30.0% | |
| ! | AACCTCGGTTTGTAATATTA+TGG | - | chr2_3:54066090-54066109 | Msa0299330:intron | 30.0% |
| ! | ACCTCGGTTTGTAATATTAT+GGG | - | chr2_3:54066091-54066110 | Msa0299330:intron | 30.0% |
| !! | TGTTTTAAATTCTGTTGGTG+TGG | - | chr2_3:54066254-54066273 | Msa0299330:intron | 30.0% |
| TTTCATGCCGTCAAAATATA+TGG | - | chr2_3:54066290-54066309 | Msa0299330:intron | 30.0% | |
| CATTTCATTATCACTTCATC+AGG | - | chr2_3:54066328-54066347 | Msa0299330:intron | 30.0% | |
| AGGTAAGATATTAAGCTTGT+TGG | - | chr2_3:54066387-54066406 | Msa0299330:CDS | 30.0% | |
| ! | GGTAAGATATTAAGCTTGTT+GGG | - | chr2_3:54066388-54066407 | Msa0299330:CDS | 30.0% |
| TTATGGCTGTAGAACAAAAA+GGG | - | chr2_3:54066490-54066509 | Msa0299330:intron | 30.0% | |
| CAATATCAAACTGACACAAA+GGG | + | chr2_3:54066647-54066666 | None:intergenic | 30.0% | |
| ACAATATCAAACTGACACAA+AGG | + | chr2_3:54066648-54066667 | None:intergenic | 30.0% | |
| ! | ATCAATCAGTTTTCATTTGG+AGG | + | chr2_3:54066717-54066736 | None:intergenic | 30.0% |
| CTATGTATCAATCAGTACTA+GGG | + | chr2_3:54066746-54066765 | None:intergenic | 30.0% | |
| AAACGGTAACTAAATCAGAA+CGG | + | chr2_3:54066901-54066920 | None:intergenic | 30.0% | |
| ! | CCTGGGTATTTTACATTAAA+CGG | + | chr2_3:54066918-54066937 | None:intergenic | 30.0% |
| CGATGTAAAATCATGGATAT+AGG | + | chr2_3:54066944-54066963 | None:intergenic | 30.0% | |
| GGAGAAGAAAAATGCAAATG+AGG | - | chr2_3:54064176-54064195 | Msa0299330:three_prime_UTR | 35.0% | |
| TTAATGTGTGAATGAGTGCA+TGG | + | chr2_3:54064223-54064242 | None:intergenic | 35.0% | |
| TTAAGTGTGTCTGAACCAAT+TGG | - | chr2_3:54064286-54064305 | Msa0299330:three_prime_UTR | 35.0% | |
| !!! | CACCTAATCACTGTCATTTT+AGG | + | chr2_3:54064350-54064369 | None:intergenic | 35.0% |
| TCTGATGCCATACCAAAATT+TGG | + | chr2_3:54064475-54064494 | None:intergenic | 35.0% | |
| TATTATGTAGATATCCGAGG+AGG | - | chr2_3:54064611-54064630 | Msa0299330:intron | 35.0% | |
| AGGCAGATTAAAAAAGGATG+AGG | - | chr2_3:54064635-54064654 | Msa0299330:intron | 35.0% | |
| CAGATTAAAAAAGGATGAGG+AGG | - | chr2_3:54064638-54064657 | Msa0299330:intron | 35.0% | |
| AGGAGGAACAGAAAGAAATA+TGG | - | chr2_3:54064655-54064674 | Msa0299330:intron | 35.0% | |
| AAACTGCAAGCTGTGTTTAT+GGG | - | chr2_3:54064770-54064789 | Msa0299330:intron | 35.0% | |
| !! | CTGTGAAGTGTTCTAGAATA+TGG | - | chr2_3:54064851-54064870 | Msa0299330:intron | 35.0% |
| ATCATAGGTACTAATCATGG+TGG | - | chr2_3:54065096-54065115 | Msa0299330:intron | 35.0% | |
| ATCATGGTGGTAATATTTCG+GGG | - | chr2_3:54065109-54065128 | Msa0299330:intron | 35.0% | |
| !! | CCTACAAGAATGGGTTATTA+AGG | + | chr2_3:54065179-54065198 | None:intergenic | 35.0% |
| CCTTAATAACCCATTCTTGT+AGG | - | chr2_3:54065176-54065195 | Msa0299330:intron | 35.0% | |
| AATTGGTCGTTTGACATAAG+TGG | + | chr2_3:54065421-54065440 | None:intergenic | 35.0% | |
| !!! | GATTCCTTTTTTCAGGCAAT+TGG | + | chr2_3:54065438-54065457 | None:intergenic | 35.0% |
| !!! | GAGGAAGTTATTTTTTTCCC+AGG | + | chr2_3:54065653-54065672 | None:intergenic | 35.0% |
| TTCATTGTTTGCATCAAGGA+AGG | - | chr2_3:54065676-54065695 | Msa0299330:intron | 35.0% | |
| TCATTGTTTGCATCAAGGAA+GGG | - | chr2_3:54065677-54065696 | Msa0299330:intron | 35.0% | |
| ! | ATCTAAAATCATTCTTGGCG+GGG | + | chr2_3:54065772-54065791 | None:intergenic | 35.0% |
| AAACGAATGTCCTCAAATGT+TGG | - | chr2_3:54065798-54065817 | Msa0299330:intron | 35.0% | |
| TTGTCAAATGCCAACATTTG+AGG | + | chr2_3:54065811-54065830 | None:intergenic | 35.0% | |
| TCAAATGTTGGCATTTGACA+AGG | - | chr2_3:54065810-54065829 | Msa0299330:intron | 35.0% | |
| ACCCATAATATTACAAACCG+AGG | + | chr2_3:54066095-54066114 | None:intergenic | 35.0% | |
| ! | ACTTTTAGACTGCTGATGAA+AGG | + | chr2_3:54066177-54066196 | None:intergenic | 35.0% |
| ! | AGCTGGAGAGATTTTATGAA+GGG | - | chr2_3:54066356-54066375 | Msa0299330:CDS | 35.0% |
| ! | TTTTATGAAGGGTGGAAAGA+AGG | - | chr2_3:54066367-54066386 | Msa0299330:CDS | 35.0% |
| AAGCATCAAGTAGTAGTAGT+TGG | + | chr2_3:54066421-54066440 | None:intergenic | 35.0% | |
| GTTATGGCTGTAGAACAAAA+AGG | - | chr2_3:54066489-54066508 | Msa0299330:intron | 35.0% | |
| ! | TTCTGAACGTAGGATTTGTT+AGG | + | chr2_3:54066549-54066568 | None:intergenic | 35.0% |
| CCTATGTATCAATCAGTACT+AGG | + | chr2_3:54066747-54066766 | None:intergenic | 35.0% | |
| !! | CCTAGTACTGATTGATACAT+AGG | - | chr2_3:54066744-54066763 | Msa0299330:intron | 35.0% |
| !! | AGTACTGATTGATACATAGG+AGG | - | chr2_3:54066747-54066766 | Msa0299330:intron | 35.0% |
| AAGTTGTATTGCCTTTGCAA+AGG | - | chr2_3:54066778-54066797 | Msa0299330:intron | 35.0% | |
| CTTCTGTCTAACCTAAAATC+TGG | + | chr2_3:54066860-54066879 | None:intergenic | 35.0% | |
| !!! | CAGATTTTAGGTTAGACAGA+AGG | - | chr2_3:54066858-54066877 | Msa0299330:intron | 35.0% |
| CCGTTTAATGTAAAATACCC+AGG | - | chr2_3:54066915-54066934 | Msa0299330:CDS | 35.0% | |
| ATCATGGATATAGGTTACCT+GGG | + | chr2_3:54066935-54066954 | None:intergenic | 35.0% | |
| AATCATGGATATAGGTTACC+TGG | + | chr2_3:54066936-54066955 | None:intergenic | 35.0% | |
| GCAATGACGATGTAAAATCA+TGG | + | chr2_3:54066951-54066970 | None:intergenic | 35.0% | |
| ATGTCGTAGACTCATCCAAT+TGG | + | chr2_3:54064304-54064323 | None:intergenic | 40.0% | |
| TCTCGCGTACATAATTTCTC+AGG | + | chr2_3:54064556-54064575 | None:intergenic | 40.0% | |
| ! | TTTTAATCTGCCTTCCTCCT+CGG | + | chr2_3:54064628-54064647 | None:intergenic | 40.0% |
| GGAGGAAGGCAGATTAAAAA+AGG | - | chr2_3:54064629-54064648 | Msa0299330:intron | 40.0% | |
| ! | AAGAAAGCGTGAACATGAAG+AGG | - | chr2_3:54064680-54064699 | Msa0299330:intron | 40.0% |
| GGAAGGAACAAGAGAAAAGA+GGG | - | chr2_3:54064707-54064726 | Msa0299330:intron | 40.0% | |
| CAAACTGCAAGCTGTGTTTA+TGG | - | chr2_3:54064769-54064788 | Msa0299330:intron | 40.0% | |
| GCTCTTTCTACAATTTGCCA+AGG | - | chr2_3:54065044-54065063 | Msa0299330:intron | 40.0% | |
| TGGTAATATTTCGGGGTCTT+TGG | - | chr2_3:54065116-54065135 | Msa0299330:intron | 40.0% | |
| TCATGTAGGCTTGTGATAGA+TGG | + | chr2_3:54065315-54065334 | None:intergenic | 40.0% | |
| ACGACCAATTGCCTGAAAAA+AGG | - | chr2_3:54065431-54065450 | Msa0299330:intron | 40.0% | |
| TAACACTTCCTCTCACATGA+AGG | - | chr2_3:54065473-54065492 | Msa0299330:intron | 40.0% | |
| TCCCAACTGTAAAACATTCC+TGG | - | chr2_3:54065632-54065651 | Msa0299330:intron | 40.0% | |
| ! | CCCAGGAATGTTTTACAGTT+GGG | + | chr2_3:54065636-54065655 | None:intergenic | 40.0% |
| CCCAACTGTAAAACATTCCT+GGG | - | chr2_3:54065633-54065652 | Msa0299330:intron | 40.0% | |
| ! | TCCCAGGAATGTTTTACAGT+TGG | + | chr2_3:54065637-54065656 | None:intergenic | 40.0% |
| !! | TGAGACTAGCTTGTAAACCT+CGG | - | chr2_3:54066075-54066094 | Msa0299330:intron | 40.0% |
| CTTCATAAAATCTCTCCAGC+TGG | + | chr2_3:54066357-54066376 | None:intergenic | 40.0% | |
| ! | CAGCTGGAGAGATTTTATGA+AGG | - | chr2_3:54066355-54066374 | Msa0299330:CDS | 40.0% |
| ! | TGGAGAGATTTTATGAAGGG+TGG | - | chr2_3:54066359-54066378 | Msa0299330:CDS | 40.0% |
| AAGCAAATCACTGTGTTCGA+AGG | + | chr2_3:54066451-54066470 | None:intergenic | 40.0% | |
| ATCTTCTGTCTTGAGCTTAG+GGG | + | chr2_3:54066526-54066545 | None:intergenic | 40.0% | |
| GATCTTCTGTCTTGAGCTTA+GGG | + | chr2_3:54066527-54066546 | None:intergenic | 40.0% | |
| ! | AACACCCAAGCCTCTTTTTA+CGG | + | chr2_3:54066574-54066593 | None:intergenic | 40.0% |
| TAAAAAGAGGCTTGGGTGTT+TGG | - | chr2_3:54066574-54066593 | Msa0299330:intron | 40.0% | |
| AAGTTTACATGGACTCCTGT+TGG | + | chr2_3:54066615-54066634 | None:intergenic | 40.0% | |
| ACAGTCGGAAGAATTCAAGC+AGG | - | chr2_3:54064108-54064127 | Msa0299330:three_prime_UTR | 45.0% | |
| ATGTAGATATCCGAGGAGGA+AGG | - | chr2_3:54064615-54064634 | Msa0299330:intron | 45.0% | |
| AGCGTGAACATGAAGAGGAA+TGG | - | chr2_3:54064685-54064704 | Msa0299330:CDS | 45.0% | |
| GCGTGAACATGAAGAGGAAT+GGG | - | chr2_3:54064686-54064705 | Msa0299330:CDS | 45.0% | |
| GAACATGAAGAGGAATGGGA+AGG | - | chr2_3:54064690-54064709 | Msa0299330:CDS | 45.0% | |
| GGGAAGGAACAAGAGAAAAG+AGG | - | chr2_3:54064706-54064725 | Msa0299330:intron | 45.0% | |
| GGACTCTTGTGAGACTGATA+TGG | + | chr2_3:54065010-54065029 | None:intergenic | 45.0% | |
| GGTCGTTTGACATAAGTGGT+CGG | + | chr2_3:54065417-54065436 | None:intergenic | 45.0% | |
| GCTAAATGCCTTCATGTGAG+AGG | + | chr2_3:54065484-54065503 | None:intergenic | 45.0% | |
| ATCATTCTTGGCGGGGATTA+AGG | + | chr2_3:54065765-54065784 | None:intergenic | 45.0% | |
| CAACCTAAGAGCTCCTTAGA+TGG | + | chr2_3:54065904-54065923 | None:intergenic | 45.0% | |
| GGATCTTCTGTCTTGAGCTT+AGG | + | chr2_3:54066528-54066547 | None:intergenic | 45.0% | |
| ! | TTTTACGGGCTTCTGAACGT+AGG | + | chr2_3:54066559-54066578 | None:intergenic | 45.0% |
| GTTCAGAAGCCCGTAAAAAG+AGG | - | chr2_3:54066561-54066580 | Msa0299330:intron | 45.0% | |
| AAGCCCGTAAAAAGAGGCTT+GGG | - | chr2_3:54066567-54066586 | Msa0299330:intron | 45.0% | |
| ! | ACACCCAAGCCTCTTTTTAC+GGG | + | chr2_3:54066573-54066592 | None:intergenic | 45.0% |
| TAGGGTCATGAGCATCTCAA+TGG | - | chr2_3:54066683-54066702 | Msa0299330:intron | 45.0% | |
| ! | TCTGCAGTGAGCCAGATTTT+AGG | - | chr2_3:54066846-54066865 | Msa0299330:intron | 45.0% |
| !!! | TTTTTTTTTTTTTTTTTTGA+AGG | - | chr2_3:54065510-54065529 | Msa0299330:intron | 5.0% |
| TCGCCATCTAAGGAGCTCTT+AGG | - | chr2_3:54065898-54065917 | Msa0299330:intron | 50.0% | |
| CACTTCATCAGGTATCCAGC+TGG | - | chr2_3:54066339-54066358 | Msa0299330:intron | 50.0% | |
| GAAGCCCGTAAAAAGAGGCT+TGG | - | chr2_3:54066566-54066585 | Msa0299330:intron | 50.0% | |
| TCACAGGCGATCTATCCAAC+AGG | - | chr2_3:54066597-54066616 | Msa0299330:intron | 50.0% | |
| GGCGCATGGCTAAGTTTACA+TGG | + | chr2_3:54066626-54066645 | None:intergenic | 50.0% | |
| ! | AAACTGACACAAAGGGCGCA+TGG | + | chr2_3:54066640-54066659 | None:intergenic | 50.0% |
| !! | AGAGGGCGGGTGTTGTTATC+TGG | - | chr2_3:54065283-54065302 | Msa0299330:intron | 55.0% |
| GGAGGCAGTTTCGCCATCTA+AGG | - | chr2_3:54065888-54065907 | Msa0299330:intron | 55.0% | |
| AGGCTTGGGTGTTTGGTCAC+AGG | - | chr2_3:54066581-54066600 | Msa0299330:intron | 55.0% | |
| ! | TCTGGCTCACTGCAGATGAC+TGG | + | chr2_3:54066842-54066861 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 54064085 | 54066985 | 54064085 | ID=Msa0299330;Name=Msa0299330 |
| chr2_3 | mRNA | 54064085 | 54066985 | 54064085 | ID=Msa0299330-mRNA-1;Parent=Msa0299330;Name=Msa0299330-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0.66|0.75|1|1|1|4|254|160 |
| chr2_3 | exon | 54064085 | 54064568 | 54064085 | ID=Msa0299330-mRNA-1:exon:17265;Parent=Msa0299330-mRNA-1 |
| chr2_3 | exon | 54064682 | 54064712 | 54064682 | ID=Msa0299330-mRNA-1:exon:17264;Parent=Msa0299330-mRNA-1 |
| chr2_3 | exon | 54066342 | 54066449 | 54066342 | ID=Msa0299330-mRNA-1:exon:17263;Parent=Msa0299330-mRNA-1 |
| chr2_3 | exon | 54066872 | 54066985 | 54066872 | ID=Msa0299330-mRNA-1:exon:17262;Parent=Msa0299330-mRNA-1 |
| chr2_3 | CDS | 54066872 | 54066985 | 54066872 | ID=Msa0299330-mRNA-1:cds;Parent=Msa0299330-mRNA-1 |
| chr2_3 | CDS | 54066342 | 54066449 | 54066342 | ID=Msa0299330-mRNA-1:cds;Parent=Msa0299330-mRNA-1 |
| chr2_3 | CDS | 54064682 | 54064712 | 54064682 | ID=Msa0299330-mRNA-1:cds;Parent=Msa0299330-mRNA-1 |
| chr2_3 | CDS | 54064339 | 54064568 | 54064339 | ID=Msa0299330-mRNA-1:cds;Parent=Msa0299330-mRNA-1 |
| chr2_3 | three_prime_UTR | 54064085 | 54064338 | 54064085 | ID=Msa0299330-mRNA-1:three_prime_utr;Parent=Msa0299330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
