AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0556860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0556860 MtrunA17_Chr4g0045851 98.507 201 3 0 1 201 1 201 1.64e-138 385
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0556860 AT3G59800.2 85.149 101 15 0 1 101 1 101 6.39e-50 159
Msa0556860 AT3G59800.1 85.149 101 15 0 1 101 1 101 2.98e-49 159
Msa0556860 AT2G43795.2 49.701 167 83 1 30 195 1 167 3.22e-46 150
Msa0556860 AT2G43795.1 73.333 90 24 0 30 119 1 90 8.62e-42 138

Find 67 sgRNAs with CRISPR-Local

Find 488 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATAGCCAAACCTTGTTCT+TGG 0.239984 4_1:+55097725 None:intergenic
TTTCTGAAAATAGTAAATTA+TGG 0.250847 4_1:-55097991 Msa0556860:three_prime_UTR
CTAGGAAGAAGAACTGAAAA+AGG 0.260060 4_1:-55100624 Msa0556860:intron
TCAAGAAATTTGTTGACTTT+AGG 0.286942 4_1:-55097898 Msa0556860:three_prime_UTR
TGATGTTTGAACAACACTTC+TGG 0.289234 4_1:-55097808 Msa0556860:three_prime_UTR
TTGAACAACACTTCTGGATT+TGG 0.290264 4_1:-55097802 Msa0556860:three_prime_UTR
TTGATAGATTGATTGTTCTA+TGG 0.299314 4_1:+55103564 None:intergenic
AATCTATCAATTCAGAGAAA+TGG 0.314391 4_1:-55103551 Msa0556860:exon
TCACAAATTTCAATCGAATC+AGG 0.320223 4_1:-55103623 Msa0556860:five_prime_UTR
ATCTATCAATTCAGAGAAAT+GGG 0.342377 4_1:-55103550 Msa0556860:exon
GCAAGGCTCGGTGGTGCTTC+CGG 0.354086 4_1:-55103496 Msa0556860:CDS
GTTGATAGTGGTTGAATACT+TGG 0.366478 4_1:-55098034 Msa0556860:exon
GCTTATCCAAGAACAAGGTT+TGG 0.421320 4_1:-55097731 Msa0556860:three_prime_UTR
AGAGTGGCATGCTGCCCGTT+TGG 0.423871 4_1:-55102559 Msa0556860:CDS
ATAAGATGATGAGGGAATAC+AGG 0.426474 4_1:-55100580 Msa0556860:CDS
TCTCTCTTCGTCTTCACTAC+TGG 0.428331 4_1:+55098195 None:intergenic
TTGCAATGTGCGAACGTAGC+TGG 0.437203 4_1:+55103675 None:intergenic
TTGATTGATGTAGTGTGAAA+AGG 0.442243 4_1:-55097875 Msa0556860:three_prime_UTR
CTTCTTTGACCGCTTAGACC+TGG 0.443954 4_1:+55098153 None:intergenic
AAACATCTCACACAATTACC+TGG 0.458263 4_1:-55102527 Msa0556860:CDS
TGATTGATGTAGTGTGAAAA+GGG 0.479537 4_1:-55097874 Msa0556860:three_prime_UTR
GTTGATCATAAAAGTAAAGC+TGG 0.486353 4_1:+55097968 None:intergenic
AAGGGCTCGCAAACTTTCCC+AGG 0.487233 4_1:-55100540 Msa0556860:CDS
AGCCTAAAGTTATCACGAAA+AGG 0.487395 4_1:+55097751 None:intergenic
ATGCCATCTTCAACCTCATC+GGG 0.490780 4_1:+55103469 None:intergenic
GATGACGAAGAGGAGCTAGA+TGG 0.490948 4_1:+55098229 None:intergenic
TACTAGAGTGATTTCTACCC+TGG 0.496543 4_1:+55100522 None:intergenic
GGGACATCAAGAGTTGATAG+TGG 0.496931 4_1:-55098046 Msa0556860:CDS
TTCACTACTGGAAGAGTATG+AGG 0.499980 4_1:+55098207 None:intergenic
AGTAAGTCTAAACATTCAAA+AGG 0.504331 4_1:-55100500 Msa0556860:intron
CAGGTCTAAGCGGTCAAAGA+AGG 0.511908 4_1:-55098152 Msa0556860:CDS
GGCTCAACTAGATGCTGAAA+GGG 0.514123 4_1:-55100558 Msa0556860:CDS
AGGAGCTATTATTTCAGAGC+GGG 0.518295 4_1:+55097771 None:intergenic
AAACGGGCAGCATGCCACTC+TGG 0.524308 4_1:+55102561 None:intergenic
TTCAACCTCATCGGGACCAC+CGG 0.529801 4_1:+55103477 None:intergenic
CACAAATTTCAATCGAATCA+GGG 0.541830 4_1:-55103622 Msa0556860:five_prime_UTR
TCCGCCACCATCTTCACTAT+CGG 0.542822 4_1:+55098093 None:intergenic
TCTGGAACCGATAGTGAAGA+TGG 0.562772 4_1:-55098100 Msa0556860:CDS
GGTCCCGATGAGGTTGAAGA+TGG 0.565102 4_1:-55103472 Msa0556860:CDS
CGATGAGGTTGAAGATGGCA+TGG 0.570062 4_1:-55103467 Msa0556860:intron
CATGCCATCTTCAACCTCAT+CGG 0.571808 4_1:+55103468 None:intergenic
GGGCTCAACTAGATGCTGAA+AGG 0.573209 4_1:-55100559 Msa0556860:CDS
ACAAAGCTATGCAGAGAGCA+AGG 0.581939 4_1:-55103513 Msa0556860:CDS
TTTAGGCTTATCCAAGAACA+AGG 0.589127 4_1:-55097736 Msa0556860:three_prime_UTR
AACATCTCACACAATTACCT+GGG 0.601521 4_1:-55102526 Msa0556860:CDS
TGAGGACTGTCGCAGGTGGA+TGG 0.601935 4_1:-55102597 Msa0556860:intron
AGGCTCGGTGGTGCTTCCGG+TGG 0.602328 4_1:-55103493 Msa0556860:CDS
CAGATGCAGATAAGATGATG+AGG 0.606436 4_1:-55100589 Msa0556860:CDS
AGAGTATGAGGATGACGAAG+AGG 0.615891 4_1:+55098219 None:intergenic
GAATCAGGGTCTAACTGTGG+TGG 0.616678 4_1:-55103608 Msa0556860:five_prime_UTR
TAAGATGATGAGGGAATACA+GGG 0.627608 4_1:-55100579 Msa0556860:CDS
ACCGATAGTGAAGATGGTGG+CGG 0.628462 4_1:-55098094 Msa0556860:CDS
ATGCAGAGAGCAAGGCTCGG+TGG 0.635782 4_1:-55103505 Msa0556860:CDS
AGATGCAGATAAGATGATGA+GGG 0.636183 4_1:-55100588 Msa0556860:CDS
GTTCATTTCATTCACCAGAG+TGG 0.638013 4_1:-55102575 Msa0556860:CDS
ACTAGAGTGATTTCTACCCT+GGG 0.639592 4_1:+55100523 None:intergenic
TGCTTCCGGTGGTCCCGATG+AGG 0.643153 4_1:-55103482 Msa0556860:CDS
TATTCTACTATACAGACAAG+AGG 0.650041 4_1:-55100388 Msa0556860:intron
ATTCTACTATACAGACAAGA+GGG 0.661482 4_1:-55100387 Msa0556860:intron
AGGGCTCGCAAACTTTCCCA+GGG 0.663904 4_1:-55100539 Msa0556860:CDS
GCTATGCAGAGAGCAAGGCT+CGG 0.668438 4_1:-55103508 Msa0556860:CDS
TCTATCAATTCAGAGAAATG+GGG 0.673304 4_1:-55103549 Msa0556860:exon
GATTGATGTAGTGTGAAAAG+GGG 0.678302 4_1:-55097873 Msa0556860:three_prime_UTR
GATCAAAGTCCAGGTCTAAG+CGG 0.689586 4_1:-55098162 Msa0556860:CDS
ATCGAATCAGGGTCTAACTG+TGG 0.693954 4_1:-55103611 Msa0556860:five_prime_UTR
GGAACCGATAGTGAAGATGG+TGG 0.710189 4_1:-55098097 Msa0556860:CDS
AAGGAGCTATTATTTCAGAG+CGG 0.723056 4_1:+55097770 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTATGAATTTCTTT+TGG - chr4_1:55098587-55098606 Msa0556860:intron 10.0%
!! CATATATCATTATATTTATT+TGG + chr4_1:55100000-55100019 None:intergenic 10.0%
!! CAAATAAATATAATGATATA+TGG - chr4_1:55099998-55100017 Msa0556860:intron 10.0%
!!! TTATTATTTGAAAGAATTTT+TGG - chr4_1:55100087-55100106 Msa0556860:intron 10.0%
!! ATATATATATATATATATCC+AGG + chr4_1:55100261-55100280 None:intergenic 10.0%
!!! ATTGAAATTTGTGATTTTTA+GGG + chr4_1:55097771-55097790 None:intergenic 15.0%
!! AAAATTGAAAGAGAATAATA+TGG + chr4_1:55097970-55097989 None:intergenic 15.0%
!! TGTTGTATATTATATAAACA+CGG + chr4_1:55099162-55099181 None:intergenic 15.0%
!! TATCATATGAAATGTTATAA+GGG + chr4_1:55099386-55099405 None:intergenic 15.0%
!! ATATCATATGAAATGTTATA+AGG + chr4_1:55099387-55099406 None:intergenic 15.0%
!! AATTAAAAAACAGGTAAATT+TGG + chr4_1:55099472-55099491 None:intergenic 15.0%
!! TTAAGAAGAAATTAAAAAAC+AGG + chr4_1:55099481-55099500 None:intergenic 15.0%
!! AATATAATGATATATGGATT+TGG - chr4_1:55100004-55100023 Msa0556860:intron 15.0%
!! GTTAAGAAAAAATTATTCTT+GGG + chr4_1:55100464-55100483 None:intergenic 15.0%
!!! TTTGTTGTAATTTATTTACT+AGG - chr4_1:55100758-55100777 Msa0556860:intron 15.0%
!!! TCTGTAAATTTGTTTAAAAA+GGG + chr4_1:55102537-55102556 None:intergenic 15.0%
!!! TTCTGTAAATTTGTTTAAAA+AGG + chr4_1:55102538-55102557 None:intergenic 15.0%
!!! GAAAATGATTTTATTTTGTT+TGG - chr4_1:55102616-55102635 Msa0556860:intron 15.0%
!!! CTTTTTTTTAAAAAGTTCAA+GGG - chr4_1:55102798-55102817 Msa0556860:intron 15.0%
!!! TTTTTTTTAAAAAGTTCAAG+GGG - chr4_1:55102799-55102818 Msa0556860:intron 15.0%
!!! TTTCTGAAAATAGTAAATTA+TGG - chr4_1:55103409-55103428 Msa0556860:intron 15.0%
!!! GATTGAAATTTGTGATTTTT+AGG + chr4_1:55097772-55097791 None:intergenic 20.0%
!!! GTTTTATGCTCTTAATTTTT+GGG - chr4_1:55098047-55098066 Msa0556860:CDS 20.0%
!!! AAGTTATTTTTTTCACTTGA+TGG + chr4_1:55098399-55098418 None:intergenic 20.0%
!! GTGTGTATATATTGTATTAT+AGG - chr4_1:55098718-55098737 Msa0556860:intron 20.0%
!!! ATTTACTCTTAGAAGTATAT+TGG - chr4_1:55098944-55098963 Msa0556860:intron 20.0%
!! GAAATTATAAAAACGATGTA+AGG + chr4_1:55099074-55099093 None:intergenic 20.0%
!! AATTTCAAAATGACAAAAGT+TGG - chr4_1:55099537-55099556 Msa0556860:intron 20.0%
!!! ATTCCAAAACAAAACTATTT+TGG + chr4_1:55099709-55099728 None:intergenic 20.0%
!!! TTTTGTTTTGGAATTATTAG+AGG - chr4_1:55099715-55099734 Msa0556860:intron 20.0%
!!! TTTGTTTTGGAATTATTAGA+GGG - chr4_1:55099716-55099735 Msa0556860:intron 20.0%
!! ATTATATTTATTTGGAAGTG+CGG + chr4_1:55099992-55100011 None:intergenic 20.0%
!!! AATTTTCATCTTTATATTCC+CGG + chr4_1:55100233-55100252 None:intergenic 20.0%
!! AATAAATTCATGGAAGTTAT+GGG - chr4_1:55100409-55100428 Msa0556860:intron 20.0%
!! GGTTAAGAAAAAATTATTCT+TGG + chr4_1:55100465-55100484 None:intergenic 20.0%
!! TTCTTAACCATTAACAAATA+TGG - chr4_1:55100476-55100495 Msa0556860:intron 20.0%
!! TCTTAACCATTAACAAATAT+GGG - chr4_1:55100477-55100496 Msa0556860:intron 20.0%
!! GACAAATCATACAATAAAAA+AGG + chr4_1:55100662-55100681 None:intergenic 20.0%
!!! CAATTTTGTGTCAATTTTTT+AGG - chr4_1:55100699-55100718 Msa0556860:intron 20.0%
!!! TCAATGTGTCTTTTTTTTTT+TGG - chr4_1:55101301-55101320 Msa0556860:intron 20.0%
!!! TTTTTTTTTGGATCTCTTAT+AGG - chr4_1:55101313-55101332 Msa0556860:intron 20.0%
!!! TTTTTTTTGGATCTCTTATA+GGG - chr4_1:55101314-55101333 Msa0556860:intron 20.0%
!! CTATATTATTGACAAGAAAA+CGG - chr4_1:55101455-55101474 Msa0556860:intron 20.0%
!!! AAAAATTTGATAATCAAGGT+GGG + chr4_1:55101762-55101781 None:intergenic 20.0%
!!! ATGCAAAAATTTGATAATCA+AGG + chr4_1:55101766-55101785 None:intergenic 20.0%
!! AGTATATTTAAACGTGAAAA+AGG - chr4_1:55102463-55102482 Msa0556860:intron 20.0%
!! GTATATTTAAACGTGAAAAA+GGG - chr4_1:55102464-55102483 Msa0556860:intron 20.0%
!!! ATTCAAATGATTATTTTCGT+TGG - chr4_1:55102717-55102736 Msa0556860:intron 20.0%
!!! TCCTAAAATTTTGAAGAAAA+GGG + chr4_1:55102773-55102792 None:intergenic 20.0%
!!! GCTTTTTTTTAAAAAGTTCA+AGG - chr4_1:55102797-55102816 Msa0556860:intron 20.0%
!! CACTTAACAAGTTAATATTT+AGG + chr4_1:55102895-55102914 None:intergenic 20.0%
!! TTAACAATTAACAAAACTGA+AGG + chr4_1:55103024-55103043 None:intergenic 20.0%
! TTGATAGATTGATTGTTCTA+TGG + chr4_1:55097839-55097858 None:intergenic 25.0%
! AATCTATCAATTCAGAGAAA+TGG - chr4_1:55097849-55097868 Msa0556860:three_prime_UTR 25.0%
! ATCTATCAATTCAGAGAAAT+GGG - chr4_1:55097850-55097869 Msa0556860:three_prime_UTR 25.0%
! TGAAAGAGAATAATATGGAA+GGG + chr4_1:55097965-55097984 None:intergenic 25.0%
! TTGAAAGAGAATAATATGGA+AGG + chr4_1:55097966-55097985 None:intergenic 25.0%
!!! GGTTTTATGCTCTTAATTTT+TGG - chr4_1:55098046-55098065 Msa0556860:CDS 25.0%
! GGATTATGGCTAAAATTATT+TGG - chr4_1:55098068-55098087 Msa0556860:CDS 25.0%
! GGCTAAAATTATTTGGATTA+AGG - chr4_1:55098075-55098094 Msa0556860:CDS 25.0%
!!! AGCTGTTTTAAAAGCTATTT+TGG - chr4_1:55098204-55098223 Msa0556860:CDS 25.0%
! AAAATTGAAATTCAAGCACA+GGG + chr4_1:55098442-55098461 None:intergenic 25.0%
!!! TGCATTTTGACATTTGTTTT+TGG - chr4_1:55098463-55098482 Msa0556860:intron 25.0%
!!! GCATTTTGACATTTGTTTTT+GGG - chr4_1:55098464-55098483 Msa0556860:intron 25.0%
! TGTGGAGAATTTCATAAATT+AGG - chr4_1:55098630-55098649 Msa0556860:intron 25.0%
!!! GGTATATGTATTTGTTTTTG+AGG - chr4_1:55098651-55098670 Msa0556860:intron 25.0%
!! TAATTGTGTGAGATGTTTTA+AGG + chr4_1:55098871-55098890 None:intergenic 25.0%
! AGAGTACAAAAAGAAACAAA+AGG - chr4_1:55098898-55098917 Msa0556860:intron 25.0%
!! CTTCTAAGAGTAAATATGTA+AGG + chr4_1:55098939-55098958 None:intergenic 25.0%
! AAAAAACAGAATCAATGGAT+GGG + chr4_1:55099028-55099047 None:intergenic 25.0%
! TAAAAAACAGAATCAATGGA+TGG + chr4_1:55099029-55099048 None:intergenic 25.0%
! TGAGTAAAAAACAGAATCAA+TGG + chr4_1:55099033-55099052 None:intergenic 25.0%
!!! AGTTTGGCTTTATTTATGTA+AGG - chr4_1:55099291-55099310 Msa0556860:intron 25.0%
!!! GTTTGGCTTTATTTATGTAA+GGG - chr4_1:55099292-55099311 Msa0556860:intron 25.0%
!! TATTTATGTAAGGGTTTGTT+TGG - chr4_1:55099301-55099320 Msa0556860:intron 25.0%
!!! CATGTTTTAAAATATGACTC+CGG + chr4_1:55099515-55099534 None:intergenic 25.0%
!!! AGACCAAAATAGTTTTGTTT+TGG - chr4_1:55099703-55099722 Msa0556860:intron 25.0%
! CAAATAATAAGTGAAGTTGA+GGG + chr4_1:55100077-55100096 None:intergenic 25.0%
! TCAAATAATAAGTGAAGTTG+AGG + chr4_1:55100078-55100097 None:intergenic 25.0%
!!! TTTTGGAAAATCATCTCTTA+TGG - chr4_1:55100104-55100123 Msa0556860:intron 25.0%
!! ATTTTCATCTTTATATTCCC+GGG + chr4_1:55100232-55100251 None:intergenic 25.0%
! AAAGATGAAAATTAGATTCC+TGG - chr4_1:55100240-55100259 Msa0556860:intron 25.0%
!!! CTATAACTACCACTTTTATT+GGG + chr4_1:55100313-55100332 None:intergenic 25.0%
!!! ACTATAACTACCACTTTTAT+TGG + chr4_1:55100314-55100333 None:intergenic 25.0%
! GAATAAATTCATGGAAGTTA+TGG - chr4_1:55100408-55100427 Msa0556860:intron 25.0%
! AAAATTATTCTTGGGAGTAA+AGG + chr4_1:55100456-55100475 None:intergenic 25.0%
!! AGTATACCCATATTTGTTAA+TGG + chr4_1:55100486-55100505 None:intergenic 25.0%
! AAAAGGTTTGACTGATTAAA+GGG + chr4_1:55100645-55100664 None:intergenic 25.0%
! AAAAAGGTTTGACTGATTAA+AGG + chr4_1:55100646-55100665 None:intergenic 25.0%
! AGTAAGTCTAAACATTCAAA+AGG - chr4_1:55100900-55100919 Msa0556860:intron 25.0%
! ATAGTTGCATAAAAGTTGAA+GGG + chr4_1:55101150-55101169 None:intergenic 25.0%
!! GGAATATAAATGAACCTTTT+TGG + chr4_1:55101397-55101416 None:intergenic 25.0%
!! ACTTTCAAGTAAATATGAGA+AGG + chr4_1:55101635-55101654 None:intergenic 25.0%
!! CAAAAATTTGATAATCAAGG+TGG + chr4_1:55101763-55101782 None:intergenic 25.0%
! ACAATCAAGAAATTACTGAT+AGG + chr4_1:55102051-55102070 None:intergenic 25.0%
! TTAAATATACTTATCCAAGG+CGG + chr4_1:55102454-55102473 None:intergenic 25.0%
! CGTTTAAATATACTTATCCA+AGG + chr4_1:55102457-55102476 None:intergenic 25.0%
!! AAATGATTATTTTCGTTGGA+TGG - chr4_1:55102721-55102740 Msa0556860:intron 25.0%
!! TCCCTTTTCTTCAAAATTTT+AGG - chr4_1:55102769-55102788 Msa0556860:intron 25.0%
!!! CTCCTAAAATTTTGAAGAAA+AGG + chr4_1:55102774-55102793 None:intergenic 25.0%
! AAAGCAAATGGTTGAAAAAA+GGG + chr4_1:55102857-55102876 None:intergenic 25.0%
! TAAAGCAAATGGTTGAAAAA+AGG + chr4_1:55102858-55102877 None:intergenic 25.0%
! ATCTATTGATGTAAAGCAAA+TGG + chr4_1:55102869-55102888 None:intergenic 25.0%
! TTACAACCTTCAATTTATGT+TGG - chr4_1:55102937-55102956 Msa0556860:intron 25.0%
!!! TCAAGAAATTTGTTGACTTT+AGG - chr4_1:55103502-55103521 Msa0556860:CDS 25.0%
TCACAAATTTCAATCGAATC+AGG - chr4_1:55097777-55097796 Msa0556860:three_prime_UTR 30.0%
CACAAATTTCAATCGAATCA+GGG - chr4_1:55097778-55097797 Msa0556860:three_prime_UTR 30.0%
TCTATCAATTCAGAGAAATG+GGG - chr4_1:55097851-55097870 Msa0556860:three_prime_UTR 30.0%
AAACTCATGTAACAGCAATT+AGG + chr4_1:55098020-55098039 None:intergenic 30.0%
!!! GCTCTTAATTTTTGGGATTA+TGG - chr4_1:55098054-55098073 Msa0556860:CDS 30.0%
ATAAGCTCTTTATCCAAACA+AGG + chr4_1:55098101-55098120 None:intergenic 30.0%
TCAAATAAGCCAATCCAAAT+AGG - chr4_1:55098330-55098349 Msa0556860:intron 30.0%
GAAAATTGAAATTCAAGCAC+AGG + chr4_1:55098443-55098462 None:intergenic 30.0%
TTTGGGTGTCAATATTTCAA+TGG - chr4_1:55098481-55098500 Msa0556860:intron 30.0%
GAATTGAAACTTACTATGCA+TGG - chr4_1:55098536-55098555 Msa0556860:intron 30.0%
! TATGAATTTCTTTTGGCGTT+TGG - chr4_1:55098594-55098613 Msa0556860:intron 30.0%
! ATGAATTTCTTTTGGCGTTT+GGG - chr4_1:55098595-55098614 Msa0556860:intron 30.0%
GACAAGAATAACAAATACCA+CGG + chr4_1:55098689-55098708 None:intergenic 30.0%
TGTTGTTGTGTATATATGAG+AGG - chr4_1:55098973-55098992 Msa0556860:intron 30.0%
ATTTCAATCCAGATCATTGT+TGG - chr4_1:55099089-55099108 Msa0556860:intron 30.0%
TTTCAATCCAGATCATTGTT+GGG - chr4_1:55099090-55099109 Msa0556860:intron 30.0%
TAAACACGGATAGTAATACA+TGG + chr4_1:55099148-55099167 None:intergenic 30.0%
!!! TAGGGGAGATATTTTAATGT+AGG - chr4_1:55099336-55099355 Msa0556860:intron 30.0%
!!! AGGGGAGATATTTTAATGTA+GGG - chr4_1:55099337-55099356 Msa0556860:intron 30.0%
GGAGATGTGTTTATAAACTT+AGG + chr4_1:55099436-55099455 None:intergenic 30.0%
AAAAACAGGTAAATTTGGCA+GGG + chr4_1:55099467-55099486 None:intergenic 30.0%
AAAAAACAGGTAAATTTGGC+AGG + chr4_1:55099468-55099487 None:intergenic 30.0%
CTTCTTAATTTACTCATTGC+CGG - chr4_1:55099493-55099512 Msa0556860:intron 30.0%
! TAAAATAGAGTTTTGCACCA+TGG - chr4_1:55099580-55099599 Msa0556860:intron 30.0%
TTGAATGTTCCCAATAAAAG+TGG - chr4_1:55100301-55100320 Msa0556860:intron 30.0%
AGAAAACATATAGAACTCCA+TGG - chr4_1:55100357-55100376 Msa0556860:CDS 30.0%
GAAAACATATAGAACTCCAT+GGG - chr4_1:55100358-55100377 Msa0556860:CDS 30.0%
TACTGATGATCTAATCCTTA+GGG + chr4_1:55100554-55100573 None:intergenic 30.0%
ATACTGATGATCTAATCCTT+AGG + chr4_1:55100555-55100574 None:intergenic 30.0%
TAGGAAGAAGAACTGAAAAA+GGG - chr4_1:55100777-55100796 Msa0556860:intron 30.0%
! AAAAGGTATGTGTCGTAATT+TGG - chr4_1:55100917-55100936 Msa0556860:intron 30.0%
CATCATTAGAAACTGAGTAT+GGG + chr4_1:55100983-55101002 None:intergenic 30.0%
TCATCATTAGAAACTGAGTA+TGG + chr4_1:55100984-55101003 None:intergenic 30.0%
TATTCTACTATACAGACAAG+AGG - chr4_1:55101012-55101031 Msa0556860:intron 30.0%
ATTCTACTATACAGACAAGA+GGG - chr4_1:55101013-55101032 Msa0556860:intron 30.0%
!!! TTCCAACATTTACTTTTTCC+TGG - chr4_1:55101084-55101103 Msa0556860:intron 30.0%
TAGTTGCATAAAAGTTGAAG+GGG + chr4_1:55101149-55101168 None:intergenic 30.0%
CATAGTTGCATAAAAGTTGA+AGG + chr4_1:55101151-55101170 None:intergenic 30.0%
CATGGTTGCTGAAATATAAA+AGG + chr4_1:55101191-55101210 None:intergenic 30.0%
! CTTTTATATTTCAGCAACCA+TGG - chr4_1:55101189-55101208 Msa0556860:intron 30.0%
GATCTCTTATAGGGTAAATA+GGG - chr4_1:55101323-55101342 Msa0556860:intron 30.0%
CTTTCAACTTTCATCCAAAA+AGG - chr4_1:55101380-55101399 Msa0556860:intron 30.0%
ACTAGTTCCTGTATAACAAA+GGG - chr4_1:55101429-55101448 Msa0556860:intron 30.0%
! TTCAATTTTCGCTTATAGCT+CGG + chr4_1:55101536-55101555 None:intergenic 30.0%
ATCTACAACATAAAGTTCAG+AGG + chr4_1:55101584-55101603 None:intergenic 30.0%
TGGCAGTAAGTGTATTATTA+AGG + chr4_1:55101792-55101811 None:intergenic 30.0%
! AGAAGTTCAAAGTTGGTTTA+GGG + chr4_1:55101817-55101836 None:intergenic 30.0%
! AAGAAGTTCAAAGTTGGTTT+AGG + chr4_1:55101818-55101837 None:intergenic 30.0%
TAAACCAACTTTGAACTTCT+TGG - chr4_1:55101817-55101836 Msa0556860:intron 30.0%
!! AACTTCTTGGTTTGTAATGA+TGG - chr4_1:55101830-55101849 Msa0556860:intron 30.0%
!! ACTTCTTGGTTTGTAATGAT+GGG - chr4_1:55101831-55101850 Msa0556860:intron 30.0%
!! AATGATGGGTAAAACTAAAG+AGG - chr4_1:55101845-55101864 Msa0556860:intron 30.0%
!! AAACTTGGGAATATTGACTT+GGG + chr4_1:55101959-55101978 None:intergenic 30.0%
ATCAAGAAATTACTGATAGG+AGG + chr4_1:55102048-55102067 None:intergenic 30.0%
TAATCTGAAAATGTCTTGGA+AGG + chr4_1:55102113-55102132 None:intergenic 30.0%
! CTGGAAATTATGGTTTTCTT+TGG - chr4_1:55102163-55102182 Msa0556860:intron 30.0%
GCGAGAAAAGATATTGAAAA+GGG + chr4_1:55102565-55102584 None:intergenic 30.0%
AGCGAGAAAAGATATTGAAA+AGG + chr4_1:55102566-55102585 None:intergenic 30.0%
AAGTGATAAGACATTGGAAA+GGG + chr4_1:55102666-55102685 None:intergenic 30.0%
AAAGTGATAAGACATTGGAA+AGG + chr4_1:55102667-55102686 None:intergenic 30.0%
GTAACAAAGTGATAAGACAT+TGG + chr4_1:55102672-55102691 None:intergenic 30.0%
TGTCTTATCACTTTGTTACA+AGG - chr4_1:55102673-55102692 Msa0556860:intron 30.0%
TGAAAAAAGGGAACGATAAT+AGG + chr4_1:55102845-55102864 None:intergenic 30.0%
TCACTTCCAACATAAATTGA+AGG + chr4_1:55102946-55102965 None:intergenic 30.0%
!!! TTCGCCTATCGAAATTTTTT+GGG - chr4_1:55103334-55103353 Msa0556860:intron 30.0%
ATGTCCCAAAAAATTTCGAT+AGG + chr4_1:55103341-55103360 None:intergenic 30.0%
GTTGATCATAAAAGTAAAGC+TGG + chr4_1:55103435-55103454 None:intergenic 30.0%
TTGATTGATGTAGTGTGAAA+AGG - chr4_1:55103525-55103544 Msa0556860:CDS 30.0%
TGATTGATGTAGTGTGAAAA+GGG - chr4_1:55103526-55103545 Msa0556860:CDS 30.0%
CTGTTACATGAGTTTGTGTT+TGG - chr4_1:55098025-55098044 Msa0556860:exon 35.0%
!! ATTTGGATTAAGGCCTTGTT+TGG - chr4_1:55098085-55098104 Msa0556860:CDS 35.0%
! CTGTTTTCAGCTTATGTTCA+TGG + chr4_1:55098235-55098254 None:intergenic 35.0%
CATAAGCTGAAAACAGCATA+TGG - chr4_1:55098239-55098258 Msa0556860:CDS 35.0%
ATAAGTTCTGTGAGACTGTT+TGG + chr4_1:55098296-55098315 None:intergenic 35.0%
CAAGTTATCAAGGATACTTG+GGG + chr4_1:55098356-55098375 None:intergenic 35.0%
CCAAGTTATCAAGGATACTT+GGG + chr4_1:55098357-55098376 None:intergenic 35.0%
TCCAAGTTATCAAGGATACT+TGG + chr4_1:55098358-55098377 None:intergenic 35.0%
! ATGGCTTTTCCAAGTTATCA+AGG + chr4_1:55098366-55098385 None:intergenic 35.0%
!! ACTTGATGGTTCTAGCTTTA+TGG + chr4_1:55098385-55098404 None:intergenic 35.0%
CATTATTCAAGCAGATGTGA+AGG + chr4_1:55098514-55098533 None:intergenic 35.0%
!!! TTTGGGTTGATATGGTTTTG+TGG - chr4_1:55098612-55098631 Msa0556860:intron 35.0%
!!! ATGTTTTAAGGCTAGCCAAA+CGG + chr4_1:55098859-55098878 None:intergenic 35.0%
AAACATCTCACACAATTACC+TGG - chr4_1:55098873-55098892 Msa0556860:intron 35.0%
AACATCTCACACAATTACCT+GGG - chr4_1:55098874-55098893 Msa0556860:intron 35.0%
! TTTCTTTTTGTACTCTTCCC+AGG + chr4_1:55098894-55098913 None:intergenic 35.0%
! GGTTTGTTTGGTTCAAACAA+GGG - chr4_1:55099313-55099332 Msa0556860:intron 35.0%
!!! GGGGAGATATTTTAATGTAG+GGG - chr4_1:55099338-55099357 Msa0556860:intron 35.0%
TCAAAATGACAAAAGTTGGC+TGG - chr4_1:55099541-55099560 Msa0556860:intron 35.0%
TAAGAACGCAGTTTACTTGT+TGG - chr4_1:55099606-55099625 Msa0556860:intron 35.0%
!!! TTTTGGAATTATTAGAGGGC+CGG - chr4_1:55099720-55099739 Msa0556860:intron 35.0%
! TTTCAGGTCTCTTAAAGTAC+AGG + chr4_1:55099799-55099818 None:intergenic 35.0%
CAATTGATTAAGAGGAGTTG+AGG + chr4_1:55099839-55099858 None:intergenic 35.0%
GGAGGTTCTATTTCAAATGA+AGG + chr4_1:55099935-55099954 None:intergenic 35.0%
AATAAGTGAAGTTGAGGGTA+GGG + chr4_1:55100072-55100091 None:intergenic 35.0%
TAATAAGTGAAGTTGAGGGT+AGG + chr4_1:55100073-55100092 None:intergenic 35.0%
! ATTGAAGTTGACTCTTACGA+CGG + chr4_1:55100150-55100169 None:intergenic 35.0%
ACTTCAATTACCAACTGAAG+AGG - chr4_1:55100162-55100181 Msa0556860:intron 35.0%
CTTCAATTACCAACTGAAGA+GGG - chr4_1:55100163-55100182 Msa0556860:intron 35.0%
ATTCCCAAGAATAACTTACC+CGG - chr4_1:55100211-55100230 Msa0556860:intron 35.0%
GAATTTATTCGCATGTGAGA+AGG + chr4_1:55100398-55100417 None:intergenic 35.0%
CTCACATGCGAATAAATTCA+TGG - chr4_1:55100399-55100418 Msa0556860:intron 35.0%
AAGTTTAGGAATCACATTCC+CGG + chr4_1:55100519-55100538 None:intergenic 35.0%
ACTGATGATCTAATCCTTAG+GGG + chr4_1:55100553-55100572 None:intergenic 35.0%
CTAGGAAGAAGAACTGAAAA+AGG - chr4_1:55100776-55100795 Msa0556860:intron 35.0%
AGGAAGAAGAACTGAAAAAG+GGG - chr4_1:55100778-55100797 Msa0556860:intron 35.0%
AGATGCAGATAAGATGATGA+GGG - chr4_1:55100812-55100831 Msa0556860:intron 35.0%
ATAAGATGATGAGGGAATAC+AGG - chr4_1:55100820-55100839 Msa0556860:intron 35.0%
TAAGATGATGAGGGAATACA+GGG - chr4_1:55100821-55100840 Msa0556860:intron 35.0%
CTCCAGGAAAAAGTAAATGT+TGG + chr4_1:55101089-55101108 None:intergenic 35.0%
CAAATTAAACACTCTTCTCC+AGG + chr4_1:55101105-55101124 None:intergenic 35.0%
TTTATGCAACTATGATCTGC+TGG - chr4_1:55101157-55101176 Msa0556860:intron 35.0%
TATTTCAGCAACCATGGTAT+AGG - chr4_1:55101195-55101214 Msa0556860:intron 35.0%
!! AAAGTGTTGTCGAATCTTCA+AGG - chr4_1:55101259-55101278 Msa0556860:intron 35.0%
GGATCTCTTATAGGGTAAAT+AGG - chr4_1:55101322-55101341 Msa0556860:intron 35.0%
!! GGAACTAGTCTTGTCATTTA+TGG + chr4_1:55101418-55101437 None:intergenic 35.0%
! GACTAGTTCCTGTATAACAA+AGG - chr4_1:55101428-55101447 Msa0556860:intron 35.0%
! ATAGTCTCCCTTTGTTATAC+AGG + chr4_1:55101439-55101458 None:intergenic 35.0%
! TCAATTTTCGCTTATAGCTC+GGG + chr4_1:55101535-55101554 None:intergenic 35.0%
TAAAGTTCAGAGGCAAGAAA+GGG + chr4_1:55101574-55101593 None:intergenic 35.0%
ATAAAGTTCAGAGGCAAGAA+AGG + chr4_1:55101575-55101594 None:intergenic 35.0%
TGAGAAGGAAAGTTAGTTAG+AGG + chr4_1:55101620-55101639 None:intergenic 35.0%
! AGTTTACCCCTTTTCTAATG+AGG - chr4_1:55101652-55101671 Msa0556860:intron 35.0%
! GTTTACCCCTTTTCTAATGA+GGG - chr4_1:55101653-55101672 Msa0556860:intron 35.0%
GATAGAAAAGGAGCTTCATA+AGG + chr4_1:55101708-55101727 None:intergenic 35.0%
TGATGAGTGGTAGATAGAAA+AGG + chr4_1:55101720-55101739 None:intergenic 35.0%
AAATCTGATGGTTTGATGAG+TGG + chr4_1:55101733-55101752 None:intergenic 35.0%
! TTCAAAGTTGGTTTAGGGAA+TGG + chr4_1:55101812-55101831 None:intergenic 35.0%
CAAACCAAGAAGTTCAAAGT+TGG + chr4_1:55101824-55101843 None:intergenic 35.0%
! CAAACTTGGGAATATTGACT+TGG + chr4_1:55101960-55101979 None:intergenic 35.0%
CCTAATCATCACTCAAACTT+GGG + chr4_1:55101973-55101992 None:intergenic 35.0%
CCAAGTTTGAGTGATGATTA+GGG - chr4_1:55101971-55101990 Msa0556860:intron 35.0%
AATTACTGATAGGAGGAATG+AGG + chr4_1:55102041-55102060 None:intergenic 35.0%
! CCAATGGGAAATTTTCTTAG+AGG + chr4_1:55102088-55102107 None:intergenic 35.0%
! CCTCTAAGAAAATTTCCCAT+TGG - chr4_1:55102085-55102104 Msa0556860:intron 35.0%
GGACTAATCTGAAAATGTCT+TGG + chr4_1:55102117-55102136 None:intergenic 35.0%
! TTATGGTTTTCTTTGGACGT+AGG - chr4_1:55102170-55102189 Msa0556860:intron 35.0%
ACAGTTAATCGACAGGAAAT+TGG + chr4_1:55102284-55102303 None:intergenic 35.0%
GACATGTCCTATATAACAGT+TGG - chr4_1:55102310-55102329 Msa0556860:intron 35.0%
GAACATGCCAACTGTTATAT+AGG + chr4_1:55102320-55102339 None:intergenic 35.0%
ATAACAGTTGGCATGTTCAA+TGG - chr4_1:55102322-55102341 Msa0556860:intron 35.0%
TTTAAAAAGGGTCAATCCGA+AGG + chr4_1:55102525-55102544 None:intergenic 35.0%
! CAATATCTTTTCTCGCTTTG+AGG - chr4_1:55102569-55102588 Msa0556860:CDS 35.0%
TATCACTTTGTTACAAGGTC+TGG - chr4_1:55102678-55102697 Msa0556860:intron 35.0%
! AACTGATTCTATGATTACCC+TGG - chr4_1:55102998-55103017 Msa0556860:intron 35.0%
ATTAACAAAACTGAAGGCCA+GGG + chr4_1:55103018-55103037 None:intergenic 35.0%
AATTAACAAAACTGAAGGCC+AGG + chr4_1:55103019-55103038 None:intergenic 35.0%
GTAATGTGATGAGTATGTGT+AGG + chr4_1:55103119-55103138 None:intergenic 35.0%
CATCAAAAAGATCAAAGTCC+AGG - chr4_1:55103229-55103248 Msa0556860:intron 35.0%
AAGTCAAAAAGCAAGGATTC+TGG - chr4_1:55103282-55103301 Msa0556860:intron 35.0%
AAAAATTTCGATAGGCGAAC+TGG + chr4_1:55103333-55103352 None:intergenic 35.0%
!!! GTTCGCCTATCGAAATTTTT+TGG - chr4_1:55103333-55103352 Msa0556860:intron 35.0%
!! GTTGATAGTGGTTGAATACT+TGG - chr4_1:55103366-55103385 Msa0556860:intron 35.0%
GATTGATGTAGTGTGAAAAG+GGG - chr4_1:55103527-55103546 Msa0556860:CDS 35.0%
TGATGTTTGAACAACACTTC+TGG - chr4_1:55103592-55103611 Msa0556860:five_prime_UTR 35.0%
TTGAACAACACTTCTGGATT+TGG - chr4_1:55103598-55103617 Msa0556860:five_prime_UTR 35.0%
AAGGAGCTATTATTTCAGAG+CGG + chr4_1:55103633-55103652 None:intergenic 35.0%
! CTCCTTTTCGTGATAACTTT+AGG - chr4_1:55103647-55103666 Msa0556860:five_prime_UTR 35.0%
AGCCTAAAGTTATCACGAAA+AGG + chr4_1:55103652-55103671 None:intergenic 35.0%
TTTAGGCTTATCCAAGAACA+AGG - chr4_1:55103664-55103683 Msa0556860:five_prime_UTR 35.0%
CTTATACACAAGCGCTAATC+AGG + chr4_1:55098137-55098156 None:intergenic 40.0%
! CCCAAGTATCCTTGATAACT+TGG - chr4_1:55098354-55098373 Msa0556860:intron 40.0%
!!! TTTTGGCGTTTGGGTTGATA+TGG - chr4_1:55098604-55098623 Msa0556860:intron 40.0%
GCTTTATGATGCTCGAATGT+TGG - chr4_1:55098749-55098768 Msa0556860:intron 40.0%
TTCCTGTACCGTTATTGATG+AGG - chr4_1:55098785-55098804 Msa0556860:intron 40.0%
GTTCATTTCATTCACCAGAG+TGG - chr4_1:55098825-55098844 Msa0556860:intron 40.0%
!!! TGTTTTAAGGCTAGCCAAAC+GGG + chr4_1:55098858-55098877 None:intergenic 40.0%
GTGTATATATGAGAGGCAGA+TGG - chr4_1:55098980-55098999 Msa0556860:intron 40.0%
GTACAAACCCAACAATGATC+TGG + chr4_1:55099100-55099119 None:intergenic 40.0%
TTATTACAACGAGGTGCACA+AGG + chr4_1:55099190-55099209 None:intergenic 40.0%
ACCTCGTTGTAATAAGTTCG+AGG - chr4_1:55099195-55099214 Msa0556860:intron 40.0%
TCCTCGAACTTATTACAACG+AGG + chr4_1:55099199-55099218 None:intergenic 40.0%
TCGTTGTAATAAGTTCGAGG+AGG - chr4_1:55099198-55099217 Msa0556860:intron 40.0%
CGTTGTAATAAGTTCGAGGA+GGG - chr4_1:55099199-55099218 Msa0556860:intron 40.0%
TTCAGGACTGATCAGACATA+TGG + chr4_1:55099261-55099280 None:intergenic 40.0%
CCAAACTTCAGACACAATTC+AGG + chr4_1:55099278-55099297 None:intergenic 40.0%
! CCTGAATTGTGTCTGAAGTT+TGG - chr4_1:55099275-55099294 Msa0556860:intron 40.0%
! GGGTTTGTTTGGTTCAAACA+AGG - chr4_1:55099312-55099331 Msa0556860:intron 40.0%
! TGTTTGGTTCAAACAAGGGT+AGG - chr4_1:55099317-55099336 Msa0556860:intron 40.0%
! GTTTGGTTCAAACAAGGGTA+GGG - chr4_1:55099318-55099337 Msa0556860:intron 40.0%
! TTTGGTTCAAACAAGGGTAG+GGG - chr4_1:55099319-55099338 Msa0556860:intron 40.0%
AAACTGCGTTCTTACAACCA+TGG + chr4_1:55099600-55099619 None:intergenic 40.0%
GTGCAGCAAAACTTGAAAGA+TGG + chr4_1:55099638-55099657 None:intergenic 40.0%
TCTTGCAGTGTAACAATCGT+CGG + chr4_1:55099686-55099705 None:intergenic 40.0%
TTAAGAGGAGTTGAGGCAAA+GGG + chr4_1:55099832-55099851 None:intergenic 40.0%
ATTAAGAGGAGTTGAGGCAA+AGG + chr4_1:55099833-55099852 None:intergenic 40.0%
!! GGGAGTGTCAATTGATTAAG+AGG + chr4_1:55099847-55099866 None:intergenic 40.0%
TGTCACAAGGATCAAGTAGA+GGG + chr4_1:55099873-55099892 None:intergenic 40.0%
AGAACAAGTCTGAGAATGAG+AGG + chr4_1:55099909-55099928 None:intergenic 40.0%
! TCTCATTCTCAGACTTGTTC+TGG - chr4_1:55099908-55099927 Msa0556860:intron 40.0%
! CTCATTCTCAGACTTGTTCT+GGG - chr4_1:55099909-55099928 Msa0556860:intron 40.0%
AAAATTAAGCGCCTGTCGAA+AGG - chr4_1:55100033-55100052 Msa0556860:intron 40.0%
ATAAGTGAAGTTGAGGGTAG+GGG + chr4_1:55100071-55100090 None:intergenic 40.0%
AAACAAACACCCTCTTCAGT+TGG + chr4_1:55100175-55100194 None:intergenic 40.0%
TTCCCAAGAATAACTTACCC+GGG - chr4_1:55100212-55100231 Msa0556860:intron 40.0%
TTCCCGGGTAAGTTATTCTT+GGG + chr4_1:55100217-55100236 None:intergenic 40.0%
ATTCCCGGGTAAGTTATTCT+TGG + chr4_1:55100218-55100237 None:intergenic 40.0%
TTATTCGCATGTGAGAAGGT+GGG + chr4_1:55100394-55100413 None:intergenic 40.0%
TTTATTCGCATGTGAGAAGG+TGG + chr4_1:55100395-55100414 None:intergenic 40.0%
!! GAGTAAAGGTTCTCTGGAAT+GGG + chr4_1:55100442-55100461 None:intergenic 40.0%
AGTTTAGGAATCACATTCCC+GGG + chr4_1:55100518-55100537 None:intergenic 40.0%
!!! GGGGCGTTTCTTTTAAGTTT+AGG + chr4_1:55100533-55100552 None:intergenic 40.0%
CTGATGATCTAATCCTTAGG+GGG + chr4_1:55100552-55100571 None:intergenic 40.0%
GGAAGAAGAACTGAAAAAGG+GGG - chr4_1:55100779-55100798 Msa0556860:intron 40.0%
CAGATGCAGATAAGATGATG+AGG - chr4_1:55100811-55100830 Msa0556860:intron 40.0%
ACTAGAGTGATTTCTACCCT+GGG + chr4_1:55100880-55100899 None:intergenic 40.0%
TACTAGAGTGATTTCTACCC+TGG + chr4_1:55100881-55100900 None:intergenic 40.0%
AGGTGCTAGAAAAACACAAC+AGG + chr4_1:55100957-55100976 None:intergenic 40.0%
TAGAAACTGAGTATGGGAGA+AGG + chr4_1:55100977-55100996 None:intergenic 40.0%
GCATAGCAGCAGAAAAAGAA+AGG - chr4_1:55101052-55101071 Msa0556860:intron 40.0%
CCATAACTAGTCCTATACCA+TGG + chr4_1:55101209-55101228 None:intergenic 40.0%
!! CCATGGTATAGGACTAGTTA+TGG - chr4_1:55101206-55101225 Msa0556860:intron 40.0%
GAAAGTCGCTGACAAATTAG+AGG + chr4_1:55101365-55101384 None:intergenic 40.0%
CCATAGGAATTTACCTTGCT+GGG + chr4_1:55101511-55101530 None:intergenic 40.0%
! CAATTTTCGCTTATAGCTCG+GGG + chr4_1:55101534-55101553 None:intergenic 40.0%
CGATTCCCTCATTAGAAAAG+GGG + chr4_1:55101661-55101680 None:intergenic 40.0%
CCGATTCCCTCATTAGAAAA+GGG + chr4_1:55101662-55101681 None:intergenic 40.0%
! CCCTTTTCTAATGAGGGAAT+CGG - chr4_1:55101659-55101678 Msa0556860:intron 40.0%
CCCTAACAGTCTACTTATGT+GGG + chr4_1:55101685-55101704 None:intergenic 40.0%
CCCACATAAGTAGACTGTTA+GGG - chr4_1:55101682-55101701 Msa0556860:intron 40.0%
! ATTTGATAATCAAGGTGGGC+TGG + chr4_1:55101758-55101777 None:intergenic 40.0%
!!! CTAAAGAGGCACTAGTTTTG+CGG - chr4_1:55101859-55101878 Msa0556860:intron 40.0%
TAGCTCCACTATCAATGAGT+GGG - chr4_1:55101897-55101916 Msa0556860:intron 40.0%
AAAGGATGAGTGAGAATGAC+TGG + chr4_1:55101936-55101955 None:intergenic 40.0%
!! TGGGAATATTGACTTGGGAA+AGG + chr4_1:55101954-55101973 None:intergenic 40.0%
CCCAAGTTTGAGTGATGATT+AGG - chr4_1:55101970-55101989 Msa0556860:intron 40.0%
CCCTAATCATCACTCAAACT+TGG + chr4_1:55101974-55101993 None:intergenic 40.0%
ATGTCTTGGAAGGAACCAAT+GGG + chr4_1:55102103-55102122 None:intergenic 40.0%
AATGTCTTGGAAGGAACCAA+TGG + chr4_1:55102104-55102123 None:intergenic 40.0%
! AGAGATTCGGTTAGAGTTGA+TGG + chr4_1:55102348-55102367 None:intergenic 40.0%
GAGGATTGAAGGAAGAGATT+CGG + chr4_1:55102361-55102380 None:intergenic 40.0%
GTTACAAGGTCTGGAAGAAA+TGG - chr4_1:55102687-55102706 Msa0556860:intron 40.0%
GGGAACGATAATAGGACAAA+AGG + chr4_1:55102837-55102856 None:intergenic 40.0%
GAGAAGCTGGAGTTATAAGT+CGG + chr4_1:55102969-55102988 None:intergenic 40.0%
CTTATAACTCCAGCTTCTCT+AGG - chr4_1:55102970-55102989 Msa0556860:intron 40.0%
AGTTACAAACCTAGAGAAGC+TGG + chr4_1:55102982-55103001 None:intergenic 40.0%
GATCTTCTTGAATGCTGCAA+AGG + chr4_1:55103147-55103166 None:intergenic 40.0%
! TTCACTACTGGAAGAGTATG+AGG + chr4_1:55103196-55103215 None:intergenic 40.0%
GAAGCACAAGTCAAAAAGCA+AGG - chr4_1:55103275-55103294 Msa0556860:intron 40.0%
AGGAGCTATTATTTCAGAGC+GGG + chr4_1:55103632-55103651 None:intergenic 40.0%
GCTTATCCAAGAACAAGGTT+TGG - chr4_1:55103669-55103688 Msa0556860:five_prime_UTR 40.0%
TCATAGCCAAACCTTGTTCT+TGG + chr4_1:55103678-55103697 None:intergenic 40.0%
ATCGAATCAGGGTCTAACTG+TGG - chr4_1:55097789-55097808 Msa0556860:three_prime_UTR 45.0%
ACAAAGCTATGCAGAGAGCA+AGG - chr4_1:55097887-55097906 Msa0556860:three_prime_UTR 45.0%
ATGCCATCTTCAACCTCATC+GGG + chr4_1:55097934-55097953 None:intergenic 45.0%
CATGCCATCTTCAACCTCAT+CGG + chr4_1:55097935-55097954 None:intergenic 45.0%
TACTTGGGGCCTATTTGGAT+TGG + chr4_1:55098342-55098361 None:intergenic 45.0%
AAGGATACTTGGGGCCTATT+TGG + chr4_1:55098347-55098366 None:intergenic 45.0%
! TGAGGAAATGCTTTTCACCG+TGG - chr4_1:55098669-55098688 Msa0556860:intron 45.0%
GTCCTCATCAATAACGGTAC+AGG + chr4_1:55098790-55098809 None:intergenic 45.0%
GCGACAGTCCTCATCAATAA+CGG + chr4_1:55098796-55098815 None:intergenic 45.0%
TTATTGATGAGGACTGTCGC+AGG - chr4_1:55098796-55098815 Msa0556860:intron 45.0%
TGAGAGGCAGATGGTAGATA+TGG - chr4_1:55098989-55099008 Msa0556860:intron 45.0%
GATCAGACATATGGAGCAGA+GGG + chr4_1:55099252-55099271 None:intergenic 45.0%
TGATCAGACATATGGAGCAG+AGG + chr4_1:55099253-55099272 None:intergenic 45.0%
ACAGGTAAATTTGGCAGGGA+GGG + chr4_1:55099463-55099482 None:intergenic 45.0%
AACAGGTAAATTTGGCAGGG+AGG + chr4_1:55099464-55099483 None:intergenic 45.0%
CAAGGTCAGACTTCAGAGTT+GGG + chr4_1:55099663-55099682 None:intergenic 45.0%
! CACAGCGAGACTTTCTTTTC+CGG + chr4_1:55099742-55099761 None:intergenic 45.0%
!! AAAGGGGGTAAAGGTGTTTC+AGG + chr4_1:55099815-55099834 None:intergenic 45.0%
TAAGAGGAGTTGAGGCAAAG+GGG + chr4_1:55099831-55099850 None:intergenic 45.0%
AAGGATCAAGTAGAGGGAAG+GGG + chr4_1:55099867-55099886 None:intergenic 45.0%
CAAGGATCAAGTAGAGGGAA+GGG + chr4_1:55099868-55099887 None:intergenic 45.0%
ACAAGGATCAAGTAGAGGGA+AGG + chr4_1:55099869-55099888 None:intergenic 45.0%
GTGTCACAAGGATCAAGTAG+AGG + chr4_1:55099874-55099893 None:intergenic 45.0%
GTCTGAGAATGAGAGGTTGA+GGG + chr4_1:55099902-55099921 None:intergenic 45.0%
AGTCTGAGAATGAGAGGTTG+AGG + chr4_1:55099903-55099922 None:intergenic 45.0%
! AGTTGACTCTTACGACGGAA+AGG + chr4_1:55100145-55100164 None:intergenic 45.0%
! GGAGTAAAGGTTCTCTGGAA+TGG + chr4_1:55100443-55100462 None:intergenic 45.0%
TCTTGGGAGTAAAGGTTCTC+TGG + chr4_1:55100448-55100467 None:intergenic 45.0%
GGGTATACTCATTCACTTCC+CGG - chr4_1:55100497-55100516 Msa0556860:intron 45.0%
GGTATACTCATTCACTTCCC+GGG - chr4_1:55100498-55100517 Msa0556860:intron 45.0%
CTTAAAAGAAACGCCCCCTA+AGG - chr4_1:55100536-55100555 Msa0556860:CDS 45.0%
GGCTCAACTAGATGCTGAAA+GGG - chr4_1:55100842-55100861 Msa0556860:intron 45.0%
CCCAGCAAGGTAAATTCCTA+TGG - chr4_1:55101508-55101527 Msa0556860:intron 45.0%
GCCATAGGAATTTACCTTGC+TGG + chr4_1:55101512-55101531 None:intergenic 45.0%
! GCCGATTCCCTCATTAGAAA+AGG + chr4_1:55101663-55101682 None:intergenic 45.0%
GCCCACATAAGTAGACTGTT+AGG - chr4_1:55101681-55101700 Msa0556860:intron 45.0%
GCCCTAACAGTCTACTTATG+TGG + chr4_1:55101686-55101705 None:intergenic 45.0%
CTAGCTCCACTATCAATGAG+TGG - chr4_1:55101896-55101915 Msa0556860:intron 45.0%
!! GTGATGATTAGGGCACTGAT+TGG - chr4_1:55101981-55102000 Msa0556860:intron 45.0%
ACAAGGAGGAACATCAAGGA+TGG + chr4_1:55102138-55102157 None:intergenic 45.0%
TCCTTGATGTTCCTCCTTGT+TGG - chr4_1:55102138-55102157 Msa0556860:intron 45.0%
CCTTGATGTTCCTCCTTGTT+GGG - chr4_1:55102139-55102158 Msa0556860:intron 45.0%
CTTGATGTTCCTCCTTGTTG+GGG - chr4_1:55102140-55102159 Msa0556860:intron 45.0%
CATAATTTCCAGCCCCAACA+AGG + chr4_1:55102155-55102174 None:intergenic 45.0%
CTTGTTGGGGCTGGAAATTA+TGG - chr4_1:55102153-55102172 Msa0556860:intron 45.0%
AGAGTTCACCAACTTGGCAA+GGG + chr4_1:55102243-55102262 None:intergenic 45.0%
AAGAGTTCACCAACTTGGCA+AGG + chr4_1:55102244-55102263 None:intergenic 45.0%
!! TTGCCAAGTTGGTGAACTCT+TGG - chr4_1:55102243-55102262 Msa0556860:intron 45.0%
!! TGCCAAGTTGGTGAACTCTT+GGG - chr4_1:55102244-55102263 Msa0556860:intron 45.0%
TACCCAAGAGTTCACCAACT+TGG + chr4_1:55102249-55102268 None:intergenic 45.0%
CCACTACACAGTTAATCGAC+AGG + chr4_1:55102291-55102310 None:intergenic 45.0%
! CCTGTCGATTAACTGTGTAG+TGG - chr4_1:55102288-55102307 Msa0556860:intron 45.0%
GCTCTTTCTCAGAGGATTGA+AGG + chr4_1:55102372-55102391 None:intergenic 45.0%
! GGGATGAAGACTGTCATTTC+AGG + chr4_1:55102492-55102511 None:intergenic 45.0%
ACAGTCTTCATCCCAATCCA+AGG - chr4_1:55102498-55102517 Msa0556860:intron 45.0%
AATCCGAAGGACCTTGGATT+GGG + chr4_1:55102512-55102531 None:intergenic 45.0%
!!! TCTTTTCTCGCTTTGAGGTC+TGG - chr4_1:55102574-55102593 Msa0556860:CDS 45.0%
TTGAGGTCTGGAAGAAATCG+AGG - chr4_1:55102586-55102605 Msa0556860:intron 45.0%
ACAAGGTCTGGAAGAAATGG+AGG - chr4_1:55102690-55102709 Msa0556860:intron 45.0%
CTTGAATGCTGCAAAGGAAG+AGG + chr4_1:55103141-55103160 None:intergenic 45.0%
AGAGTATGAGGATGACGAAG+AGG + chr4_1:55103184-55103203 None:intergenic 45.0%
TCTCTCTTCGTCTTCACTAC+TGG + chr4_1:55103208-55103227 None:intergenic 45.0%
GATCAAAGTCCAGGTCTAAG+CGG - chr4_1:55103238-55103257 Msa0556860:intron 45.0%
! TCTGGAACCGATAGTGAAGA+TGG - chr4_1:55103300-55103319 Msa0556860:intron 45.0%
!! GGGACATCAAGAGTTGATAG+TGG - chr4_1:55103354-55103373 Msa0556860:intron 45.0%
!!! ATATATATATTTTAAATGTT+TGG - chr4_1:55100271-55100290 Msa0556860:intron 5.0%
!!! TTTTTTTTTTTTATATTACA+CGG + chr4_1:55103732-55103751 None:intergenic 5.0%
TTGCAATGTGCGAACGTAGC+TGG + chr4_1:55097728-55097747 None:intergenic 50.0%
GAATCAGGGTCTAACTGTGG+TGG - chr4_1:55097792-55097811 Msa0556860:three_prime_UTR 50.0%
CGATGAGGTTGAAGATGGCA+TGG - chr4_1:55097933-55097952 Msa0556860:three_prime_UTR 50.0%
CATATGGAGCAGAGGGCAAA+TGG + chr4_1:55099245-55099264 None:intergenic 50.0%
CAGGTAAATTTGGCAGGGAG+GGG + chr4_1:55099462-55099481 None:intergenic 50.0%
GCAAGGTCAGACTTCAGAGT+TGG + chr4_1:55099664-55099683 None:intergenic 50.0%
CAGTGTAACAATCGTCGGCA+AGG + chr4_1:55099681-55099700 None:intergenic 50.0%
AGAAAGTCTCGCTGTGTGAC+AGG - chr4_1:55099746-55099765 Msa0556860:intron 50.0%
AGTTGAGGCAAAGGGGGTAA+AGG + chr4_1:55099824-55099843 None:intergenic 50.0%
AAGAGGAGTTGAGGCAAAGG+GGG + chr4_1:55099830-55099849 None:intergenic 50.0%
!! TTGAGGGCATCTGTGTCACA+AGG + chr4_1:55099886-55099905 None:intergenic 50.0%
CACACACAGAGATCAAGAGG+AGG + chr4_1:55099953-55099972 None:intergenic 50.0%
ACGCACACACAGAGATCAAG+AGG + chr4_1:55099956-55099975 None:intergenic 50.0%
ATTAAGCGCCTGTCGAAAGG+TGG - chr4_1:55100036-55100055 Msa0556860:intron 50.0%
AGGGAAATCCACCTTTCGAC+AGG + chr4_1:55100047-55100066 None:intergenic 50.0%
AGAACTGAAAAAGGGGGAGC+TGG - chr4_1:55100785-55100804 Msa0556860:intron 50.0%
GGGCTCAACTAGATGCTGAA+AGG - chr4_1:55100841-55100860 Msa0556860:intron 50.0%
AAGAGCAAATGCTCCCAGCA+AGG - chr4_1:55101495-55101514 Msa0556860:intron 50.0%
GGACACCCACTCATTGATAG+TGG + chr4_1:55101905-55101924 None:intergenic 50.0%
AATGAGTGGGTGTCCTCCTT+GGG - chr4_1:55101910-55101929 Msa0556860:intron 50.0%
!! GATTAGGGCACTGATTGGTG+AGG - chr4_1:55101986-55102005 Msa0556860:intron 50.0%
CCCAACAAGGAGGAACATCA+AGG + chr4_1:55102142-55102161 None:intergenic 50.0%
AATTTCCAGCCCCAACAAGG+AGG + chr4_1:55102152-55102171 None:intergenic 50.0%
TAAACGGGGCTCTTTCTCAG+AGG + chr4_1:55102380-55102399 None:intergenic 50.0%
TGAGAAAGAGCCCCGTTTAC+TGG - chr4_1:55102381-55102400 Msa0556860:intron 50.0%
ATGCCCGATGACCAGTAAAC+GGG + chr4_1:55102395-55102414 None:intergenic 50.0%
CATGCCCGATGACCAGTAAA+CGG + chr4_1:55102396-55102415 None:intergenic 50.0%
GGGCATGGATGGAATTTGAG+TGG - chr4_1:55102409-55102428 Msa0556860:intron 50.0%
CATCCCAATCCAAGGTCCTT+CGG - chr4_1:55102506-55102525 Msa0556860:CDS 50.0%
CAATCCGAAGGACCTTGGAT+TGG + chr4_1:55102513-55102532 None:intergenic 50.0%
GATGACGAAGAGGAGCTAGA+TGG + chr4_1:55103174-55103193 None:intergenic 50.0%
CTTCTTTGACCGCTTAGACC+TGG + chr4_1:55103250-55103269 None:intergenic 50.0%
CAGGTCTAAGCGGTCAAAGA+AGG - chr4_1:55103248-55103267 Msa0556860:intron 50.0%
GGAACCGATAGTGAAGATGG+TGG - chr4_1:55103303-55103322 Msa0556860:intron 50.0%
! ACCGATAGTGAAGATGGTGG+CGG - chr4_1:55103306-55103325 Msa0556860:intron 50.0%
TCCGCCACCATCTTCACTAT+CGG + chr4_1:55103310-55103329 None:intergenic 50.0%
GCTATGCAGAGAGCAAGGCT+CGG - chr4_1:55097892-55097911 Msa0556860:three_prime_UTR 55.0%
TTCAACCTCATCGGGACCAC+CGG + chr4_1:55097926-55097945 None:intergenic 55.0%
GGTCCCGATGAGGTTGAAGA+TGG - chr4_1:55097928-55097947 Msa0556860:three_prime_UTR 55.0%
TTGATGAGGACTGTCGCAGG+TGG - chr4_1:55098799-55098818 Msa0556860:intron 55.0%
AAATTTGGCAGGGAGGGGAG+AGG + chr4_1:55099457-55099476 None:intergenic 55.0%
GGTCAGACTTCAGAGTTGGG+AGG + chr4_1:55099660-55099679 None:intergenic 55.0%
! GCTGTGTGACAGGTTGAGCT+GGG - chr4_1:55099756-55099775 Msa0556860:intron 55.0%
GTTGAGCTGGGTGATCGATG+TGG - chr4_1:55099768-55099787 Msa0556860:intron 55.0%
GATCTCTGTGTGTGCGTGTG+TGG - chr4_1:55099959-55099978 Msa0556860:intron 55.0%
TGAAGTTGAGGGTAGGGGCA+GGG + chr4_1:55100066-55100085 None:intergenic 55.0%
GGTGGGATTGTGCATTCCCA+TGG + chr4_1:55100377-55100396 None:intergenic 55.0%
AAGGGCTCGCAAACTTTCCC+AGG - chr4_1:55100860-55100879 Msa0556860:intron 55.0%
AGGGCTCGCAAACTTTCCCA+GGG - chr4_1:55100861-55100880 Msa0556860:intron 55.0%
!! GGTGGGCTGGACAAATCTGA+TGG + chr4_1:55101745-55101764 None:intergenic 55.0%
CAATGAGTGGGTGTCCTCCT+TGG - chr4_1:55101909-55101928 Msa0556860:intron 55.0%
! TGAGAATGACTGGCCCAAGG+AGG + chr4_1:55101926-55101945 None:intergenic 55.0%
! GAGTGAGAATGACTGGCCCA+AGG + chr4_1:55101929-55101948 None:intergenic 55.0%
ATGTTCCTCCTTGTTGGGGC+TGG - chr4_1:55102144-55102163 Msa0556860:intron 55.0%
GGCATGGCATTCTAGTCGCA+TGG + chr4_1:55102222-55102241 None:intergenic 55.0%
ATGCCATGCCCTTGCCAAGT+TGG - chr4_1:55102232-55102251 Msa0556860:intron 55.0%
TCACCAACTTGGCAAGGGCA+TGG + chr4_1:55102238-55102257 None:intergenic 55.0%
GAGCCCCGTTTACTGGTCAT+CGG - chr4_1:55102388-55102407 Msa0556860:intron 55.0%
AGCCCCGTTTACTGGTCATC+GGG - chr4_1:55102389-55102408 Msa0556860:intron 55.0%
TGCCCGATGACCAGTAAACG+GGG + chr4_1:55102394-55102413 None:intergenic 55.0%
CGTTTACTGGTCATCGGGCA+TGG - chr4_1:55102394-55102413 Msa0556860:intron 55.0%
TACTGGTCATCGGGCATGGA+TGG - chr4_1:55102398-55102417 Msa0556860:intron 55.0%
TCCACTACACAGTTCCGCCT+TGG - chr4_1:55102437-55102456 Msa0556860:intron 55.0%
TCCAAGGCGGAACTGTGTAG+TGG + chr4_1:55102441-55102460 None:intergenic 55.0%
AGGGTCAATCCGAAGGACCT+TGG + chr4_1:55102518-55102537 None:intergenic 55.0%
ATGCAGAGAGCAAGGCTCGG+TGG - chr4_1:55097895-55097914 Msa0556860:three_prime_UTR 60.0%
TGAGGACTGTCGCAGGTGGA+TGG - chr4_1:55098803-55098822 Msa0556860:intron 60.0%
AAACGGGCAGCATGCCACTC+TGG + chr4_1:55098842-55098861 None:intergenic 60.0%
AGAGTGGCATGCTGCCCGTT+TGG - chr4_1:55098841-55098860 Msa0556860:intron 60.0%
! CGCTGTGTGACAGGTTGAGC+TGG - chr4_1:55099755-55099774 Msa0556860:intron 60.0%
GTGAAGTTGAGGGTAGGGGC+AGG + chr4_1:55100067-55100086 None:intergenic 60.0%
CGCTTATAGCTCGGGGCCAT+AGG + chr4_1:55101527-55101546 None:intergenic 60.0%
!! GCAAGGCTCGGTGGTGCTTC+CGG - chr4_1:55097904-55097923 Msa0556860:three_prime_UTR 65.0%
TGCTTCCGGTGGTCCCGATG+AGG - chr4_1:55097918-55097937 Msa0556860:three_prime_UTR 65.0%
!! AGGCTCGGTGGTGCTTCCGG+TGG - chr4_1:55097907-55097926 Msa0556860:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 55097655 55103767 55097655 ID=Msa0556860;Name=Msa0556860
chr4_1 mRNA 55097655 55103767 55097655 ID=Msa0556860-mRNA-1;Parent=Msa0556860;Name=Msa0556860-mRNA-1;_AED=0.11;_eAED=0.11;_QI=213|1|1|1|1|1|5|387|201
chr4_1 exon 55097655 55098269 55097655 ID=Msa0556860-mRNA-1:exon:16439;Parent=Msa0556860-mRNA-1
chr4_1 exon 55100349 55100395 55100349 ID=Msa0556860-mRNA-1:exon:16438;Parent=Msa0556860-mRNA-1
chr4_1 exon 55100501 55100642 55100501 ID=Msa0556860-mRNA-1:exon:16437;Parent=Msa0556860-mRNA-1
chr4_1 exon 55102503 55102604 55102503 ID=Msa0556860-mRNA-1:exon:16436;Parent=Msa0556860-mRNA-1
chr4_1 exon 55103468 55103767 55103468 ID=Msa0556860-mRNA-1:exon:16435;Parent=Msa0556860-mRNA-1
chr4_1 five_prime_UTR 55103555 55103767 55103555 ID=Msa0556860-mRNA-1:five_prime_utr;Parent=Msa0556860-mRNA-1
chr4_1 CDS 55103468 55103554 55103468 ID=Msa0556860-mRNA-1:cds;Parent=Msa0556860-mRNA-1
chr4_1 CDS 55102503 55102604 55102503 ID=Msa0556860-mRNA-1:cds;Parent=Msa0556860-mRNA-1
chr4_1 CDS 55100501 55100642 55100501 ID=Msa0556860-mRNA-1:cds;Parent=Msa0556860-mRNA-1
chr4_1 CDS 55100349 55100395 55100349 ID=Msa0556860-mRNA-1:cds;Parent=Msa0556860-mRNA-1
chr4_1 CDS 55098042 55098269 55098042 ID=Msa0556860-mRNA-1:cds;Parent=Msa0556860-mRNA-1
chr4_1 three_prime_UTR 55097655 55098041 55097655 ID=Msa0556860-mRNA-1:three_prime_utr;Parent=Msa0556860-mRNA-1
Gene Sequence

>Msa0556860

ATGGGGAAAAATCAAGCATACAAAGCTATGCAGAGAGCAAGGCTCGGTGGTGCTTCCGGTGGTCCCGATGAGGTTGAAGATGGCATGGTGGATGGTTCATTTCATTCACCAGAGTGGCATGCTGCCCGTTTGGCTAGCCTTAAAACATCTCACACAATTACCTGGGAAGAGTACAAAAAGAAACAAAAGGAAGAAGAACTGAAAAAGGGGGAGCTGGAAGCAGATGCAGATAAGATGATGAGGGAATACAGGGCTCAACTAGATGCTGAAAGGGCTCGCAAACTTTCCCAGGGTAGAAATCACTCTAGTAGTAAGTCTAAACATTCAAAAGACAAGAGGGACAAAATTTCAAAGAAGCATAGCAGCAGAAAAAGAAAGCATTCAAGAAGATCTTCTCCATCTAGCTCCTCTTCGTCATCCTCATACTCTTCCAGTAGTGAAGACGAAGAGAGATCATCAAAAAGATCAAAGTCCAGGTCTAAGCGGTCAAAGAAGGAAAAGAAGCACAAGTCAAAAAGCAAGGATTCTGGAACCGATAGTGAAGATGGTGGCGGACCAGTTCGCCTATCGAAATTTTTTGGGACATCAAGAGTTGATAGTGGTTGA

Protein sequence

>Msa0556860

MGKNQAYKAMQRARLGGASGGPDEVEDGMVDGSFHSPEWHAARLASLKTSHTITWEEYKKKQKEEELKKGELEADADKMMREYRAQLDAERARKLSQGRNHSSSKSKHSKDKRDKISKKHSSRKRKHSRRSSPSSSSSSSSYSSSSEDEERSSKRSKSRSKRSKKEKKHKSKSKDSGTDSEDGGGPVRLSKFFGTSRVDSG*