Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0319920 | XP_003594789.1 | 100.000 | 193 | 0 | 0 | 1 | 193 | 1 | 193 | 2.87e-140 | 399 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0319920 | sp|O04834|SAR1A_ARATH | 96.373 | 193 | 7 | 0 | 1 | 193 | 1 | 193 | 2.23e-139 | 389 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0319920 | 0.815471 | 9.091027e-52 | -8.615850e-47 |
| Msa0029380 | Msa0319920 | 0.805447 | 1.329159e-49 | -8.615850e-47 |
| Msa0077340 | Msa0319920 | 0.836554 | 8.744781e-57 | -8.615850e-47 |
| Msa0106620 | Msa0319920 | 0.803085 | 4.124507e-49 | -8.615850e-47 |
| Msa0125360 | Msa0319920 | 0.804645 | 1.955980e-49 | -8.615850e-47 |
| Msa0140770 | Msa0319920 | -0.810748 | 9.880344e-51 | -8.615850e-47 |
| Msa0199940 | Msa0319920 | 0.929076 | 1.166225e-92 | -8.615850e-47 |
| Msa0209140 | Msa0319920 | 0.817022 | 4.090651e-52 | -8.615850e-47 |
| Msa0237210 | Msa0319920 | 0.802958 | 4.381985e-49 | -8.615850e-47 |
| Msa0240900 | Msa0319920 | 0.849892 | 2.415701e-60 | -8.615850e-47 |
| Msa0241830 | Msa0319920 | 0.808178 | 3.517997e-50 | -8.615850e-47 |
| Msa0244640 | Msa0319920 | 0.815567 | 8.654957e-52 | -8.615850e-47 |
| Msa0261170 | Msa0319920 | 0.806425 | 8.276930e-50 | -8.615850e-47 |
| Msa0263780 | Msa0319920 | 0.803790 | 2.946354e-49 | -8.615850e-47 |
| Msa0288620 | Msa0319920 | 0.848036 | 7.916840e-60 | -8.615850e-47 |
| Msa0315690 | Msa0319920 | 0.811398 | 7.143850e-51 | -8.615850e-47 |
| Msa0317970 | Msa0319920 | 0.840981 | 6.266374e-58 | -8.615850e-47 |
| Msa0319920 | Msa0322900 | 0.808352 | 3.230351e-50 | -8.615850e-47 |
| Msa0319920 | Msa0339020 | 0.806906 | 6.550574e-50 | -8.615850e-47 |
| Msa0319920 | Msa0341690 | 0.810534 | 1.099141e-50 | -8.615850e-47 |
| Msa0319920 | Msa0361910 | 0.802685 | 4.989193e-49 | -8.615850e-47 |
| Msa0319920 | Msa0408380 | 0.816264 | 6.048898e-52 | -8.615850e-47 |
| Msa0319920 | Msa0412790 | 0.823649 | 1.235986e-53 | -8.615850e-47 |
| Msa0319920 | Msa0479760 | -0.805736 | 1.155697e-49 | -8.615850e-47 |
| Msa0319920 | Msa0523490 | -0.815632 | 8.370013e-52 | -8.615850e-47 |
| Msa0319920 | Msa0529030 | 0.813546 | 2.423036e-51 | -8.615850e-47 |
| Msa0319920 | Msa0534720 | 0.811982 | 5.331123e-51 | -8.615850e-47 |
| Msa0319920 | Msa0555190 | 0.803424 | 3.509984e-49 | -8.615850e-47 |
| Msa0319920 | Msa0579160 | 0.805860 | 1.088713e-49 | -8.615850e-47 |
| Msa0319920 | Msa0579220 | 0.811272 | 7.607982e-51 | -8.615850e-47 |
| Msa0319920 | Msa0583360 | -0.833772 | 4.401625e-56 | -8.615850e-47 |
| Msa0319920 | Msa0626460 | 0.811245 | 7.709171e-51 | -8.615850e-47 |
| Msa0319920 | Msa0630770 | -0.814132 | 1.800244e-51 | -8.615850e-47 |
| Msa0319920 | Msa0674480 | 0.830880 | 2.288709e-55 | -8.615850e-47 |
| Msa0319920 | Msa0693330 | 0.849466 | 3.176315e-60 | -8.615850e-47 |
| Msa0319920 | Msa0702720 | 0.837618 | 4.673292e-57 | -8.615850e-47 |
| Msa0319920 | Msa0712860 | 0.801812 | 7.546703e-49 | -8.615850e-47 |
| Msa0319920 | Msa0733010 | 0.813859 | 2.068271e-51 | -8.615850e-47 |
| Msa0319920 | Msa0769300 | 0.803292 | 3.737349e-49 | -8.615850e-47 |
| Msa0319920 | Msa0795750 | 0.837011 | 6.683844e-57 | -8.615850e-47 |
| Msa0319920 | Msa0800480 | 0.805953 | 1.040688e-49 | -8.615850e-47 |
| Msa0319920 | Msa0830660 | 0.824757 | 6.790699e-54 | -8.615850e-47 |
| Msa0319920 | Msa0833530 | 0.841295 | 5.183278e-58 | -8.615850e-47 |
| Msa0319920 | Msa1034500 | 0.800798 | 1.217072e-48 | -8.615850e-47 |
| Msa0319920 | Msa1071180 | -0.813296 | 2.750795e-51 | -8.615850e-47 |
| Msa0319920 | Msa1089450 | 0.846433 | 2.178583e-59 | -8.615850e-47 |
| Msa0319920 | Msa1150960 | 0.806272 | 8.914703e-50 | -8.615850e-47 |
| Msa0319920 | Msa1155170 | -0.818686 | 1.721996e-52 | -8.615850e-47 |
| Msa0319920 | Msa1165090 | 0.809799 | 1.582435e-50 | -8.615850e-47 |
| Msa0319920 | Msa1213040 | 0.813405 | 2.602471e-51 | -8.615850e-47 |
| Msa0319920 | Msa1218450 | 0.819444 | 1.157660e-52 | -8.615850e-47 |
| Msa0319920 | Msa1225860 | -0.830456 | 2.907619e-55 | -8.615850e-47 |
| Msa0319920 | Msa1260220 | 0.810487 | 1.124913e-50 | -8.615850e-47 |
| Msa0319920 | Msa1320130 | 0.804879 | 1.747930e-49 | -8.615850e-47 |
| Msa0319920 | Msa1340200 | 0.811127 | 8.177611e-51 | -8.615850e-47 |
| Msa0319920 | Msa1341840 | 0.838400 | 2.940741e-57 | -8.615850e-47 |
| Msa0319920 | Msa1356600 | -0.826789 | 2.236577e-54 | -8.615850e-47 |
| Msa0319920 | Msa1398810 | 0.802574 | 5.260539e-49 | -8.615850e-47 |
| Msa0319920 | Msa1405460 | 0.817437 | 3.299005e-52 | -8.615850e-47 |
| Msa0319920 | Msa1407840 | 0.800447 | 1.435402e-48 | -8.615850e-47 |
| Msa0319920 | Msa1440310 | 0.834891 | 2.305052e-56 | -8.615850e-47 |
| Msa0319920 | Msa1454500 | 0.807208 | 5.655436e-50 | -8.615850e-47 |
| Msa0319920 | Msa1461370 | 0.815549 | 8.734479e-52 | -8.615850e-47 |
| Msa0319920 | Msa1464090 | 0.802169 | 6.374573e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0319920 | MtrunA17_Chr2g0294701 | 100.000 | 193 | 0 | 0 | 1 | 193 | 1 | 193 | 2.64e-144 | 399 |
| Msa0319920 | MtrunA17_Chr4g0068171 | 93.782 | 193 | 12 | 0 | 1 | 193 | 1 | 193 | 5.10e-138 | 383 |
| Msa0319920 | MtrunA17_Chr7g0271761 | 92.746 | 193 | 14 | 0 | 1 | 193 | 1 | 193 | 6.65e-137 | 380 |
| Msa0319920 | MtrunA17_Chr4g0072861 | 34.659 | 176 | 103 | 1 | 18 | 193 | 15 | 178 | 6.23e-29 | 106 |
| Msa0319920 | MtrunA17_Chr5g0401761 | 32.768 | 177 | 103 | 2 | 18 | 192 | 15 | 177 | 4.31e-26 | 99.0 |
| Msa0319920 | MtrunA17_Chr5g0395631 | 29.843 | 191 | 114 | 3 | 3 | 193 | 8 | 178 | 4.68e-25 | 96.3 |
| Msa0319920 | MtrunA17_Chr5g0413451 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 8.38e-25 | 95.5 |
| Msa0319920 | MtrunA17_Chr5g0413441 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 8.38e-25 | 95.5 |
| Msa0319920 | MtrunA17_Chr7g0270301 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 8.84e-25 | 95.5 |
| Msa0319920 | MtrunA17_Chr1g0194261 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 8.93e-25 | 95.5 |
| Msa0319920 | MtrunA17_Chr6g0450081 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 9.03e-25 | 95.5 |
| Msa0319920 | MtrunA17_Chr4g0039591 | 29.843 | 191 | 114 | 3 | 3 | 193 | 8 | 178 | 1.39e-24 | 95.1 |
| Msa0319920 | MtrunA17_Chr8g0373271 | 33.333 | 171 | 103 | 1 | 22 | 192 | 18 | 177 | 6.36e-24 | 93.2 |
| Msa0319920 | MtrunA17_Chr4g0012371 | 32.386 | 176 | 100 | 3 | 22 | 193 | 2 | 162 | 8.79e-24 | 92.4 |
| Msa0319920 | MtrunA17_Chr5g0395641 | 29.381 | 194 | 113 | 5 | 3 | 193 | 8 | 180 | 1.82e-23 | 92.0 |
| Msa0319920 | MtrunA17_Chr2g0287721 | 37.267 | 161 | 83 | 4 | 3 | 151 | 1 | 155 | 3.10e-23 | 92.0 |
| Msa0319920 | MtrunA17_Chr5g0401071 | 31.443 | 194 | 119 | 3 | 1 | 193 | 1 | 181 | 4.05e-23 | 91.3 |
| Msa0319920 | MtrunA17_Chr1g0188111 | 33.333 | 171 | 102 | 1 | 19 | 189 | 16 | 174 | 1.82e-22 | 89.4 |
| Msa0319920 | MtrunA17_Chr5g0434561 | 35.570 | 149 | 94 | 2 | 1 | 148 | 1 | 148 | 2.17e-22 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0319920 | AT4G02080.1 | 96.373 | 193 | 7 | 0 | 1 | 193 | 1 | 193 | 2.27e-140 | 389 |
| Msa0319920 | AT1G56330.1 | 95.833 | 192 | 8 | 0 | 1 | 192 | 1 | 192 | 9.06e-138 | 383 |
| Msa0319920 | AT3G62560.1 | 94.792 | 192 | 10 | 0 | 1 | 192 | 1 | 192 | 2.87e-137 | 381 |
| Msa0319920 | AT1G09180.1 | 91.192 | 193 | 17 | 0 | 1 | 193 | 1 | 193 | 2.80e-131 | 366 |
| Msa0319920 | AT1G02620.1 | 90.090 | 111 | 11 | 0 | 83 | 193 | 12 | 122 | 1.09e-71 | 213 |
| Msa0319920 | AT2G24765.1 | 35.227 | 176 | 102 | 1 | 18 | 193 | 15 | 178 | 1.23e-28 | 105 |
| Msa0319920 | AT3G49870.1 | 33.505 | 194 | 115 | 3 | 1 | 193 | 1 | 181 | 4.21e-27 | 101 |
| Msa0319920 | AT5G67560.1 | 32.990 | 194 | 116 | 3 | 1 | 193 | 1 | 181 | 4.25e-26 | 99.4 |
| Msa0319920 | AT3G49870.2 | 34.706 | 170 | 98 | 2 | 25 | 193 | 5 | 162 | 9.11e-26 | 97.8 |
| Msa0319920 | AT2G47170.2 | 31.551 | 187 | 112 | 2 | 8 | 192 | 5 | 177 | 5.90e-25 | 96.3 |
| Msa0319920 | AT2G47170.1 | 31.551 | 187 | 112 | 2 | 8 | 192 | 5 | 177 | 5.90e-25 | 96.3 |
| Msa0319920 | AT2G47170.3 | 31.551 | 187 | 112 | 2 | 8 | 192 | 5 | 177 | 5.90e-25 | 96.3 |
| Msa0319920 | AT3G62290.3 | 31.551 | 187 | 112 | 2 | 8 | 192 | 5 | 177 | 6.43e-25 | 96.3 |
| Msa0319920 | AT3G62290.1 | 31.551 | 187 | 112 | 2 | 8 | 192 | 5 | 177 | 6.43e-25 | 96.3 |
| Msa0319920 | AT3G62290.2 | 31.551 | 187 | 112 | 2 | 8 | 192 | 5 | 177 | 6.43e-25 | 96.3 |
| Msa0319920 | AT5G17060.2 | 30.366 | 191 | 113 | 3 | 3 | 193 | 8 | 178 | 8.21e-25 | 96.3 |
| Msa0319920 | AT5G17060.1 | 30.366 | 191 | 113 | 3 | 3 | 193 | 8 | 178 | 8.21e-25 | 96.3 |
| Msa0319920 | AT5G14670.2 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 1.16e-24 | 95.5 |
| Msa0319920 | AT5G14670.3 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 1.16e-24 | 95.5 |
| Msa0319920 | AT5G14670.1 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 1.30e-24 | 95.5 |
| Msa0319920 | AT1G10630.1 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 1.33e-24 | 95.1 |
| Msa0319920 | AT1G10630.2 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 1.33e-24 | 95.1 |
| Msa0319920 | AT1G23490.1 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 1.37e-24 | 95.1 |
| Msa0319920 | AT1G70490.2 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 1.37e-24 | 95.1 |
| Msa0319920 | AT1G70490.7 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 1.37e-24 | 95.1 |
| Msa0319920 | AT1G70490.4 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 1.37e-24 | 95.1 |
| Msa0319920 | AT1G70490.3 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 1.37e-24 | 95.1 |
| Msa0319920 | AT1G70490.1 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 1.37e-24 | 95.1 |
| Msa0319920 | AT1G70490.6 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 1.37e-24 | 95.1 |
| Msa0319920 | AT1G70490.5 | 31.638 | 177 | 105 | 2 | 18 | 192 | 15 | 177 | 1.37e-24 | 95.1 |
| Msa0319920 | AT2G18390.1 | 33.918 | 171 | 102 | 1 | 22 | 192 | 18 | 177 | 1.56e-24 | 95.1 |
| Msa0319920 | AT2G24765.2 | 41.593 | 113 | 66 | 0 | 18 | 130 | 15 | 127 | 2.08e-24 | 93.6 |
| Msa0319920 | AT3G03120.1 | 29.843 | 191 | 114 | 3 | 3 | 193 | 8 | 178 | 7.21e-24 | 93.6 |
| Msa0319920 | AT5G37680.1 | 35.948 | 153 | 96 | 2 | 1 | 152 | 1 | 152 | 2.95e-23 | 92.0 |
| Msa0319920 | AT3G49860.1 | 35.714 | 140 | 89 | 1 | 15 | 153 | 6 | 145 | 3.61e-23 | 91.3 |
| Msa0319920 | AT3G22950.1 | 32.759 | 174 | 105 | 2 | 19 | 192 | 16 | 177 | 9.59e-23 | 90.5 |
| Msa0319920 | AT3G22950.2 | 32.759 | 174 | 105 | 2 | 19 | 192 | 16 | 177 | 9.59e-23 | 90.5 |
| Msa0319920 | AT2G15310.1 | 30.508 | 177 | 111 | 1 | 16 | 192 | 13 | 177 | 1.59e-22 | 90.5 |
| Msa0319920 | AT3G03120.2 | 31.298 | 131 | 82 | 1 | 3 | 133 | 8 | 130 | 1.17e-20 | 84.0 |
| Msa0319920 | AT5G52210.1 | 36.913 | 149 | 76 | 3 | 15 | 148 | 7 | 152 | 2.87e-20 | 84.7 |
| Msa0319920 | AT5G52210.2 | 36.913 | 149 | 76 | 3 | 15 | 148 | 7 | 152 | 2.87e-20 | 84.7 |
| Msa0319920 | AT5G37680.2 | 39.806 | 103 | 62 | 0 | 50 | 152 | 3 | 105 | 1.36e-18 | 78.6 |
| Msa0319920 | AT1G02430.2 | 31.206 | 141 | 89 | 4 | 18 | 151 | 15 | 154 | 7.44e-15 | 69.3 |
| Msa0319920 | AT1G02430.1 | 31.206 | 141 | 89 | 4 | 18 | 151 | 15 | 154 | 1.42e-14 | 69.3 |
| Msa0319920 | AT1G02440.1 | 27.857 | 140 | 95 | 3 | 18 | 151 | 15 | 154 | 2.08e-13 | 65.9 |
Find 59 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTTTGCCTGTGGTGAAAT+TGG | 0.182813 | 2_4:-20006800 | None:intergenic |
| TTCATCTTTGATTGGTTCTA+TGG | 0.202834 | 2_4:+20004448 | Msa0319920:CDS |
| AAAATACTTGATTCTGTTGT+AGG | 0.228261 | 2_4:+20007106 | Msa0319920:three_prime_UTR |
| ACAAAACCAACCCATTCTTT+TGG | 0.265477 | 2_4:+20004395 | Msa0319920:five_prime_UTR |
| CTCTGTCTGTTGTGTTGTCT+TGG | 0.283623 | 2_4:-20004277 | None:intergenic |
| ATCAAATTGCTCGTAGAGTT+TGG | 0.294302 | 2_4:+20004752 | Msa0319920:CDS |
| AATGTTCCATTTCTTATTCT+AGG | 0.294978 | 2_4:+20006715 | Msa0319920:CDS |
| CAACCATGTTCATCTTTGAT+TGG | 0.304638 | 2_4:+20004440 | Msa0319920:exon |
| CTTCGGAGGAATTGAGTATT+GGG | 0.328437 | 2_4:+20004695 | Msa0319920:CDS |
| TTCTTGCATCCCTTGGTCTC+TGG | 0.356031 | 2_4:+20004473 | Msa0319920:CDS |
| TATGGCATTCTTGCATCCCT+TGG | 0.385266 | 2_4:+20004466 | Msa0319920:CDS |
| TCGTCTTCTGAAGCTGCATA+TGG | 0.388503 | 2_4:-20006754 | None:intergenic |
| AATTACAAGTTATTTACCTT+TGG | 0.388603 | 2_4:+20006980 | Msa0319920:three_prime_UTR |
| GTAGAGTCCAATCTGTTTGC+TGG | 0.399444 | 2_4:+20006933 | Msa0319920:exon |
| GAAGCCAAGATTCTCTTCCT+TGG | 0.425299 | 2_4:+20004502 | Msa0319920:CDS |
| GAGATCTAAACCCAAAAGAA+TGG | 0.455176 | 2_4:-20004406 | None:intergenic |
| TTCCTTGGTCTTGATAATGC+TGG | 0.455864 | 2_4:+20004517 | Msa0319920:CDS |
| TTGTTTCCTAGAATAAGAAA+TGG | 0.457150 | 2_4:-20006721 | None:intergenic |
| ACTTCGGAGGAATTGAGTAT+TGG | 0.465946 | 2_4:+20004694 | Msa0319920:CDS |
| CATCTTTGAGCATATGAAGA+AGG | 0.466211 | 2_4:-20004549 | None:intergenic |
| ATTGTCCGCAAGATGGGATA+TGG | 0.471519 | 2_4:+20006877 | Msa0319920:CDS |
| TTCCTCCGAAGTAGGATGTT+GGG | 0.479835 | 2_4:-20004683 | None:intergenic |
| TGCAGCATTGTCCGCAAGAT+GGG | 0.482538 | 2_4:+20006871 | Msa0319920:CDS |
| TTGGAAAGATTATTATGCTA+AGG | 0.487117 | 2_4:+20004771 | Msa0319920:CDS |
| AAGACCAAGGAAGAGAATCT+TGG | 0.490940 | 2_4:-20004506 | None:intergenic |
| TGCCTCCATTAATATCTAAG+AGG | 0.501614 | 2_4:-20007186 | None:intergenic |
| AATCTGTTTGCTGGTCAACT+AGG | 0.503343 | 2_4:+20006942 | Msa0319920:three_prime_UTR |
| AGATCTAAACCCAAAAGAAT+GGG | 0.503502 | 2_4:-20004405 | None:intergenic |
| TGATATATTGTGAAAGCCAC+TGG | 0.515926 | 2_4:-20006909 | None:intergenic |
| ACCAATTTCACCACAGGCAA+AGG | 0.519780 | 2_4:+20006799 | Msa0319920:CDS |
| CGTCTTCTGAAGCTGCATAT+GGG | 0.521363 | 2_4:-20006753 | None:intergenic |
| GTGCAGCATTGTCCGCAAGA+TGG | 0.523551 | 2_4:+20006870 | Msa0319920:CDS |
| TGCCTGTGGTGAAATTGGTT+AGG | 0.535024 | 2_4:-20006795 | None:intergenic |
| GAGGTTTGCAGAATCTAAGA+AGG | 0.538939 | 2_4:+20006657 | Msa0319920:CDS |
| ATACTCAATTCCTCCGAAGT+AGG | 0.542870 | 2_4:-20004691 | None:intergenic |
| ATTCCTCCGAAGTAGGATGT+TGG | 0.553310 | 2_4:-20004684 | None:intergenic |
| ATTGACCTTGCCTTTGCCTG+TGG | 0.559718 | 2_4:-20006809 | None:intergenic |
| CGCAAGATGGGATATGGCGA+AGG | 0.565211 | 2_4:+20006883 | Msa0319920:CDS |
| TACTTGATTCTGTTGTAGGA+TGG | 0.566088 | 2_4:+20007110 | Msa0319920:three_prime_UTR |
| CTAAACCCAAAAGAATGGGT+TGG | 0.570954 | 2_4:-20004401 | None:intergenic |
| TAGTTGACCAGCAAACAGAT+TGG | 0.573453 | 2_4:-20006940 | None:intergenic |
| TGTTGTAGGATGGCATGACT+TGG | 0.574774 | 2_4:+20007120 | Msa0319920:three_prime_UTR |
| TCTTCATATGCTCAAAGATG+AGG | 0.580955 | 2_4:+20004552 | Msa0319920:CDS |
| ATCTTTGAGCATATGAAGAA+GGG | 0.582029 | 2_4:-20004548 | None:intergenic |
| CTTTGTCGTAAGCATCGACT+AGG | 0.589660 | 2_4:-20006633 | None:intergenic |
| GGCCTAACCAATTTCACCAC+AGG | 0.595827 | 2_4:+20006793 | Msa0319920:CDS |
| CTGCACATGAACACTTCAAG+AGG | 0.596703 | 2_4:-20006853 | None:intergenic |
| TCGATGCTTACGACAAAGAG+AGG | 0.612300 | 2_4:+20006638 | Msa0319920:CDS |
| ACCGACCCAACATCCTACTT+CGG | 0.614242 | 2_4:+20004678 | Msa0319920:CDS |
| TTCCAGCATTATCAAGACCA+AGG | 0.615002 | 2_4:-20004519 | None:intergenic |
| GACGAGCTACGATATCATCT+CGG | 0.618823 | 2_4:+20006772 | Msa0319920:CDS |
| TCCGAAGTAGGATGTTGGGT+CGG | 0.619899 | 2_4:-20004679 | None:intergenic |
| CCAATCAAAAGCAAAACCAA+AGG | 0.637449 | 2_4:-20006996 | None:intergenic |
| CACTTCAAGAGGTCGAACGT+TGG | 0.639582 | 2_4:-20006842 | None:intergenic |
| TTTCACCACAGGCAAAGGCA+AGG | 0.642687 | 2_4:+20006804 | Msa0319920:CDS |
| CTTCGCCATATCCCATCTTG+CGG | 0.645914 | 2_4:-20006882 | None:intergenic |
| GACCCAACATCCTACTTCGG+AGG | 0.659761 | 2_4:+20004681 | Msa0319920:CDS |
| GAACCAATCAAAGATGAACA+TGG | 0.687495 | 2_4:-20004443 | None:intergenic |
| GATATGGCGAAGGCTTCCAG+TGG | 0.701402 | 2_4:+20006893 | Msa0319920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTCTTGATTATCATTTTT+TGG | + | chr2_4:20004810-20004829 | Msa0319920:intron | 15.0% |
| !!! | TCATTTTTTGGTTTTTATTT+AGG | + | chr2_4:20004822-20004841 | Msa0319920:intron | 15.0% |
| !!! | CATTTTTTGGTTTTTATTTA+GGG | + | chr2_4:20004823-20004842 | Msa0319920:intron | 15.0% |
| !! | ATAAATATAATGATCTATCT+AGG | + | chr2_4:20005230-20005249 | Msa0319920:intron | 15.0% |
| !! | ATAGATTATATCTGTATAAA+AGG | + | chr2_4:20006033-20006052 | Msa0319920:intron | 15.0% |
| !!! | AAACTTCAAATTTTTGTTAT+TGG | - | chr2_4:20006419-20006438 | None:intergenic | 15.0% |
| !!! | ACAAAAATTTGAAGTTTTTT+TGG | + | chr2_4:20006422-20006441 | Msa0319920:intron | 15.0% |
| !!! | ATGTTTAGAGATTATTTTTT+TGG | + | chr2_4:20007066-20007085 | Msa0319920:three_prime_UTR | 15.0% |
| !!! | TGTTTAGAGATTATTTTTTT+GGG | + | chr2_4:20007067-20007086 | Msa0319920:three_prime_UTR | 15.0% |
| !!! | AATCGAATTTTGAATCAAAA+GGG | - | chr2_4:20004601-20004620 | None:intergenic | 20.0% |
| !!! | AAATCGAATTTTGAATCAAA+AGG | - | chr2_4:20004602-20004621 | None:intergenic | 20.0% |
| !!! | AAGTTTAAAGCTTTTGATTT+GGG | + | chr2_4:20004724-20004743 | Msa0319920:CDS | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+TGG | + | chr2_4:20005071-20005090 | Msa0319920:intron | 20.0% |
| !! | AACTATATTTCTTACAAAAG+TGG | - | chr2_4:20005421-20005440 | None:intergenic | 20.0% |
| !! | TTTGTATTTATCTGATTCAT+GGG | + | chr2_4:20005858-20005877 | Msa0319920:intron | 20.0% |
| !!! | GCTATTTTTATAAACTATCT+TGG | - | chr2_4:20006250-20006269 | None:intergenic | 20.0% |
| !! | AATTACAAGTTATTTACCTT+TGG | + | chr2_4:20006980-20006999 | Msa0319920:three_prime_UTR | 20.0% |
| !!! | AACAGAATCAAGTATTTTAA+AGG | - | chr2_4:20007104-20007123 | None:intergenic | 20.0% |
| !!! | CAAGTTTAAAGCTTTTGATT+TGG | + | chr2_4:20004723-20004742 | Msa0319920:CDS | 25.0% |
| ! | TTGGAAAGATTATTATGCTA+AGG | + | chr2_4:20004771-20004790 | Msa0319920:CDS | 25.0% |
| !!! | GTTTTTATTTAGGGATTAGT+TGG | + | chr2_4:20004832-20004851 | Msa0319920:intron | 25.0% |
| ! | TTCAGTGTAATTATAAGTGT+CGG | - | chr2_4:20005046-20005065 | None:intergenic | 25.0% |
| ! | ATAAAAATGTTACAAAGACC+AGG | - | chr2_4:20005173-20005192 | None:intergenic | 25.0% |
| ! | TTTCTTACAAAAGTGGTATT+TGG | - | chr2_4:20005414-20005433 | None:intergenic | 25.0% |
| ! | GAGAAGATGAATTATTTGAA+TGG | - | chr2_4:20005566-20005585 | None:intergenic | 25.0% |
| !! | TTTTAATGACTCATTCTTCT+TGG | + | chr2_4:20005766-20005785 | Msa0319920:intron | 25.0% |
| !! | AAATACAAAGAGCTTTATCT+GGG | - | chr2_4:20005847-20005866 | None:intergenic | 25.0% |
| !! | TAAATACAAAGAGCTTTATC+TGG | - | chr2_4:20005848-20005867 | None:intergenic | 25.0% |
| ! | CTTTGTATTTATCTGATTCA+TGG | + | chr2_4:20005857-20005876 | Msa0319920:intron | 25.0% |
| ! | TTCTCTCAAATTCTTGTTAA+AGG | - | chr2_4:20005975-20005994 | None:intergenic | 25.0% |
| ! | ATGTCTTCTAATGCTTAAAT+GGG | - | chr2_4:20006088-20006107 | None:intergenic | 25.0% |
| ! | TATGTCTTCTAATGCTTAAA+TGG | - | chr2_4:20006089-20006108 | None:intergenic | 25.0% |
| !! | CTCTAGAAGTTATAGTATAT+TGG | - | chr2_4:20006551-20006570 | None:intergenic | 25.0% |
| ! | AATGTTCCATTTCTTATTCT+AGG | + | chr2_4:20006715-20006734 | Msa0319920:CDS | 25.0% |
| ! | TTGTTTCCTAGAATAAGAAA+TGG | - | chr2_4:20006724-20006743 | None:intergenic | 25.0% |
| !!! | TTAGAGATTATTTTTTTGGG+TGG | + | chr2_4:20007070-20007089 | Msa0319920:three_prime_UTR | 25.0% |
| ! | AAAATACTTGATTCTGTTGT+AGG | + | chr2_4:20007106-20007125 | Msa0319920:three_prime_UTR | 25.0% |
| ! | GTTTTGTGAATCTGTGAAAT+GGG | - | chr2_4:20004382-20004401 | None:intergenic | 30.0% |
| AGATCTAAACCCAAAAGAAT+GGG | - | chr2_4:20004408-20004427 | None:intergenic | 30.0% | |
| !! | TTCATCTTTGATTGGTTCTA+TGG | + | chr2_4:20004448-20004467 | Msa0319920:CDS | 30.0% |
| ATCTTTGAGCATATGAAGAA+GGG | - | chr2_4:20004551-20004570 | None:intergenic | 30.0% | |
| TCAAAAGGGTCAAAGAAAAA+AGG | - | chr2_4:20004587-20004606 | None:intergenic | 30.0% | |
| !!! | TTTAAAGCTTTTGATTTGGG+TGG | + | chr2_4:20004727-20004746 | Msa0319920:CDS | 30.0% |
| ATTTGTGAAAGTCTGTTGAA+AGG | + | chr2_4:20004875-20004894 | Msa0319920:intron | 30.0% | |
| ! | AATTTGTTTCAGCTATTGCA+TGG | + | chr2_4:20004905-20004924 | Msa0319920:intron | 30.0% |
| ACACTTTCATTCTCATGAAT+TGG | + | chr2_4:20005297-20005316 | Msa0319920:intron | 30.0% | |
| ACTAATTAACTAGCTAGCAT+GGG | - | chr2_4:20005465-20005484 | None:intergenic | 30.0% | |
| AACTAATTAACTAGCTAGCA+TGG | - | chr2_4:20005466-20005485 | None:intergenic | 30.0% | |
| ACACGTTCAATATATAGTGT+GGG | - | chr2_4:20005504-20005523 | None:intergenic | 30.0% | |
| TCAAATGTACTAATACGTGT+CGG | - | chr2_4:20005536-20005555 | None:intergenic | 30.0% | |
| TCATCTTCTCACATTATTAC+CGG | + | chr2_4:20005576-20005595 | Msa0319920:intron | 30.0% | |
| CATACCCTTGAATTGATATA+TGG | + | chr2_4:20006105-20006124 | Msa0319920:intron | 30.0% | |
| TTATGTTAGCTCAAACATGT+CGG | - | chr2_4:20006142-20006161 | None:intergenic | 30.0% | |
| ATTAAGCCGTTTATCTTAAC+AGG | + | chr2_4:20006359-20006378 | Msa0319920:intron | 30.0% | |
| TTAAGCCGTTTATCTTAACA+GGG | + | chr2_4:20006360-20006379 | Msa0319920:intron | 30.0% | |
| TGTCTAAAGGTGAAAGAATA+TGG | - | chr2_4:20006386-20006405 | None:intergenic | 30.0% | |
| ! | TGGAAATCTCTTTTGTCTAA+AGG | - | chr2_4:20006399-20006418 | None:intergenic | 30.0% |
| !! | ACTATAACTTCTAGAGTTGT+TGG | + | chr2_4:20006555-20006574 | Msa0319920:intron | 30.0% |
| !! | GGTTTTGTGAATCTGTGAAA+TGG | - | chr2_4:20004383-20004402 | None:intergenic | 35.0% |
| ! | ACAAAACCAACCCATTCTTT+TGG | + | chr2_4:20004395-20004414 | Msa0319920:five_prime_UTR | 35.0% |
| ! | CAAAACCAACCCATTCTTTT+GGG | + | chr2_4:20004396-20004415 | Msa0319920:five_prime_UTR | 35.0% |
| GAGATCTAAACCCAAAAGAA+TGG | - | chr2_4:20004409-20004428 | None:intergenic | 35.0% | |
| CAACCATGTTCATCTTTGAT+TGG | + | chr2_4:20004440-20004459 | Msa0319920:exon | 35.0% | |
| GAACCAATCAAAGATGAACA+TGG | - | chr2_4:20004446-20004465 | None:intergenic | 35.0% | |
| CATCTTTGAGCATATGAAGA+AGG | - | chr2_4:20004552-20004571 | None:intergenic | 35.0% | |
| TCTTCATATGCTCAAAGATG+AGG | + | chr2_4:20004552-20004571 | Msa0319920:CDS | 35.0% | |
| ATCAAATTGCTCGTAGAGTT+TGG | + | chr2_4:20004752-20004771 | Msa0319920:CDS | 35.0% | |
| TGAAAGTCTGTTGAAAGGTT+TGG | + | chr2_4:20004880-20004899 | Msa0319920:intron | 35.0% | |
| !! | GTAATTATAAGTGTCGGTGT+CGG | - | chr2_4:20005040-20005059 | None:intergenic | 35.0% |
| AAATCAGCACCTATGAAACA+CGG | - | chr2_4:20005119-20005138 | None:intergenic | 35.0% | |
| !!! | CTGATTTGTTTTCAGTTGGA+TGG | + | chr2_4:20005132-20005151 | Msa0319920:intron | 35.0% |
| GTAACTACATGTGTAAGTGT+CGG | - | chr2_4:20005268-20005287 | None:intergenic | 35.0% | |
| CACACGTTCAATATATAGTG+TGG | - | chr2_4:20005505-20005524 | None:intergenic | 35.0% | |
| CTATATATTGAACGTGTGTC+CGG | + | chr2_4:20005507-20005526 | Msa0319920:intron | 35.0% | |
| !! | AGGTGTTACTTCTTGTTGTA+TGG | + | chr2_4:20005646-20005665 | Msa0319920:intron | 35.0% |
| !! | GGTGTTACTTCTTGTTGTAT+GGG | + | chr2_4:20005647-20005666 | Msa0319920:intron | 35.0% |
| !! | GTGTTACTTCTTGTTGTATG+GGG | + | chr2_4:20005648-20005667 | Msa0319920:intron | 35.0% |
| ! | AGCTTTATCTGGGATTATGA+AGG | - | chr2_4:20005837-20005856 | None:intergenic | 35.0% |
| GTATTTATCTGATTCATGGG+AGG | + | chr2_4:20005861-20005880 | Msa0319920:intron | 35.0% | |
| !!! | ACCTCCTGAAAGTTTTAAAG+GGG | - | chr2_4:20005918-20005937 | None:intergenic | 35.0% |
| !!! | CACCTCCTGAAAGTTTTAAA+GGG | - | chr2_4:20005919-20005938 | None:intergenic | 35.0% |
| !! | ACACCTCCTGAAAGTTTTAA+AGG | - | chr2_4:20005920-20005939 | None:intergenic | 35.0% |
| AAAGGAAAACAGTACATGTG+TGG | - | chr2_4:20005957-20005976 | None:intergenic | 35.0% | |
| TGAGAGAAAGAACATACAGA+AGG | + | chr2_4:20005987-20006006 | Msa0319920:intron | 35.0% | |
| GAGAGAAAGAACATACAGAA+GGG | + | chr2_4:20005988-20006007 | Msa0319920:intron | 35.0% | |
| CAGGCCATATATCAATTCAA+GGG | - | chr2_4:20006112-20006131 | None:intergenic | 35.0% | |
| ACAGGCCATATATCAATTCA+AGG | - | chr2_4:20006113-20006132 | None:intergenic | 35.0% | |
| AAACTATCTTGGAGAGCTTA+TGG | - | chr2_4:20006239-20006258 | None:intergenic | 35.0% | |
| TATGGCCCTGTTAAGATAAA+CGG | - | chr2_4:20006368-20006387 | None:intergenic | 35.0% | |
| AGTCAAACATAGAGCTGAAT+TGG | - | chr2_4:20006489-20006508 | None:intergenic | 35.0% | |
| !! | ACTTCTAGAGTTGTTGGATA+TGG | + | chr2_4:20006561-20006580 | Msa0319920:intron | 35.0% |
| ! | TTTAGAATTCTCACCTATGC+TGG | + | chr2_4:20006585-20006604 | Msa0319920:intron | 35.0% |
| TGATATATTGTGAAAGCCAC+TGG | - | chr2_4:20006912-20006931 | None:intergenic | 35.0% | |
| CCAATCAAAAGCAAAACCAA+AGG | - | chr2_4:20006999-20007018 | None:intergenic | 35.0% | |
| !!! | CCTTTGGTTTTGCTTTTGAT+TGG | + | chr2_4:20006996-20007015 | Msa0319920:three_prime_UTR | 35.0% |
| TACTTGATTCTGTTGTAGGA+TGG | + | chr2_4:20007110-20007129 | Msa0319920:three_prime_UTR | 35.0% | |
| CTAAACCCAAAAGAATGGGT+TGG | - | chr2_4:20004404-20004423 | None:intergenic | 40.0% | |
| ! | TTCTTTTTGCCAGAGACCAA+GGG | - | chr2_4:20004485-20004504 | None:intergenic | 40.0% |
| AAGACCAAGGAAGAGAATCT+TGG | - | chr2_4:20004509-20004528 | None:intergenic | 40.0% | |
| !! | TTCCTTGGTCTTGATAATGC+TGG | + | chr2_4:20004517-20004536 | Msa0319920:CDS | 40.0% |
| TTCCAGCATTATCAAGACCA+AGG | - | chr2_4:20004522-20004541 | None:intergenic | 40.0% | |
| ATACTCAATTCCTCCGAAGT+AGG | - | chr2_4:20004694-20004713 | None:intergenic | 40.0% | |
| ACTTCGGAGGAATTGAGTAT+TGG | + | chr2_4:20004694-20004713 | Msa0319920:CDS | 40.0% | |
| CTTCGGAGGAATTGAGTATT+GGG | + | chr2_4:20004695-20004714 | Msa0319920:CDS | 40.0% | |
| TTATTAGTGGTGTCTGTGTC+CGG | + | chr2_4:20005084-20005103 | Msa0319920:intron | 40.0% | |
| TGTCTGTATCCGTGTTTCAT+AGG | + | chr2_4:20005107-20005126 | Msa0319920:intron | 40.0% | |
| !!! | GGTGCTGATTTGTTTTCAGT+TGG | + | chr2_4:20005128-20005147 | Msa0319920:intron | 40.0% |
| ! | CAGTGTTGTGTCTGTGATTT+TGG | + | chr2_4:20005331-20005350 | Msa0319920:intron | 40.0% |
| GGTCTATGTAAGTGCTTCAT+AGG | + | chr2_4:20005626-20005645 | Msa0319920:intron | 40.0% | |
| !! | AGCACCCCTTTAAAACTTTC+AGG | + | chr2_4:20005911-20005930 | Msa0319920:intron | 40.0% |
| !! | ACCCCTTTAAAACTTTCAGG+AGG | + | chr2_4:20005914-20005933 | Msa0319920:intron | 40.0% |
| GAAAACAGTACATGTGTGGA+AGG | - | chr2_4:20005953-20005972 | None:intergenic | 40.0% | |
| AGAAAGAACATACAGAAGGG+TGG | + | chr2_4:20005991-20006010 | Msa0319920:intron | 40.0% | |
| GAAAGAACATACAGAAGGGT+GGG | + | chr2_4:20005992-20006011 | Msa0319920:intron | 40.0% | |
| CAAACATGTCGGATCAAAAC+AGG | - | chr2_4:20006131-20006150 | None:intergenic | 40.0% | |
| AGCTGAATTGGTGAATGGAA+AGG | - | chr2_4:20006477-20006496 | None:intergenic | 40.0% | |
| CATAGAGCTGAATTGGTGAA+TGG | - | chr2_4:20006482-20006501 | None:intergenic | 40.0% | |
| GAGGTTTGCAGAATCTAAGA+AGG | + | chr2_4:20006657-20006676 | Msa0319920:CDS | 40.0% | |
| TAGTTGACCAGCAAACAGAT+TGG | - | chr2_4:20006943-20006962 | None:intergenic | 40.0% | |
| ! | AATCTGTTTGCTGGTCAACT+AGG | + | chr2_4:20006942-20006961 | Msa0319920:three_prime_UTR | 40.0% |
| CTCTGTCTGTTGTGTTGTCT+TGG | - | chr2_4:20004280-20004299 | None:intergenic | 45.0% | |
| TATGGCATTCTTGCATCCCT+TGG | + | chr2_4:20004466-20004485 | Msa0319920:CDS | 45.0% | |
| ! | CTTCTTTTTGCCAGAGACCA+AGG | - | chr2_4:20004486-20004505 | None:intergenic | 45.0% |
| GAAGCCAAGATTCTCTTCCT+TGG | + | chr2_4:20004502-20004521 | Msa0319920:CDS | 45.0% | |
| TTCCTCCGAAGTAGGATGTT+GGG | - | chr2_4:20004686-20004705 | None:intergenic | 45.0% | |
| ATTCCTCCGAAGTAGGATGT+TGG | - | chr2_4:20004687-20004706 | None:intergenic | 45.0% | |
| TGAAACACGGATACAGACAC+CGG | - | chr2_4:20005106-20005125 | None:intergenic | 45.0% | |
| AGTTGGATGGATCTGTTGAC+AGG | + | chr2_4:20005145-20005164 | Msa0319920:intron | 45.0% | |
| TACTAATACGTGTCGGACAC+CGG | - | chr2_4:20005529-20005548 | None:intergenic | 45.0% | |
| ! | CAACGCTTGAGTGTTGTGTT+TGG | + | chr2_4:20005605-20005624 | Msa0319920:intron | 45.0% |
| !!! | GGGTGCTGGATTTTCATATG+TGG | + | chr2_4:20005668-20005687 | Msa0319920:intron | 45.0% |
| AGACTGTTTGTGAGAGCTTG+TGG | + | chr2_4:20006171-20006190 | Msa0319920:intron | 45.0% | |
| !! | CTTTGTCGTAAGCATCGACT+AGG | - | chr2_4:20006636-20006655 | None:intergenic | 45.0% |
| TCGATGCTTACGACAAAGAG+AGG | + | chr2_4:20006638-20006657 | Msa0319920:CDS | 45.0% | |
| !! | CGTCTTCTGAAGCTGCATAT+GGG | - | chr2_4:20006756-20006775 | None:intergenic | 45.0% |
| !! | TCGTCTTCTGAAGCTGCATA+TGG | - | chr2_4:20006757-20006776 | None:intergenic | 45.0% |
| GACGAGCTACGATATCATCT+CGG | + | chr2_4:20006772-20006791 | Msa0319920:CDS | 45.0% | |
| TGCCTGTGGTGAAATTGGTT+AGG | - | chr2_4:20006798-20006817 | None:intergenic | 45.0% | |
| ACCAATTTCACCACAGGCAA+AGG | + | chr2_4:20006799-20006818 | Msa0319920:CDS | 45.0% | |
| CTGCACATGAACACTTCAAG+AGG | - | chr2_4:20006856-20006875 | None:intergenic | 45.0% | |
| ATTGTCCGCAAGATGGGATA+TGG | + | chr2_4:20006877-20006896 | Msa0319920:CDS | 45.0% | |
| GTAGAGTCCAATCTGTTTGC+TGG | + | chr2_4:20006933-20006952 | Msa0319920:exon | 45.0% | |
| TGTTGTAGGATGGCATGACT+TGG | + | chr2_4:20007120-20007139 | Msa0319920:three_prime_UTR | 45.0% | |
| AGAGAGAGAGAGAGAGAGAG+GGG | - | chr2_4:20004319-20004338 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | - | chr2_4:20004320-20004339 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | - | chr2_4:20004319-20004338 | None:intergenic | 50.0% | |
| CTCTCTCTCTCTCTCTCTGT+AGG | + | chr2_4:20004331-20004350 | Msa0319920:five_prime_UTR | 50.0% | |
| TTCTTGCATCCCTTGGTCTC+TGG | + | chr2_4:20004473-20004492 | Msa0319920:CDS | 50.0% | |
| ACCGACCCAACATCCTACTT+CGG | + | chr2_4:20004678-20004697 | Msa0319920:CDS | 50.0% | |
| TCCGAAGTAGGATGTTGGGT+CGG | - | chr2_4:20004682-20004701 | None:intergenic | 50.0% | |
| ACATCCGACACGACATGTGT+CGG | - | chr2_4:20005007-20005026 | None:intergenic | 50.0% | |
| TGGATCTGTTGACAGGTTCC+TGG | + | chr2_4:20005152-20005171 | Msa0319920:intron | 50.0% | |
| ! | CTTCTTGTTGTATGGGGTGC+TGG | + | chr2_4:20005654-20005673 | Msa0319920:intron | 50.0% |
| CATGGGAGGCAAAAAGTTGC+TGG | + | chr2_4:20005875-20005894 | Msa0319920:intron | 50.0% | |
| ! | CTCACCTATGCTGGTTATCC+AGG | + | chr2_4:20006594-20006613 | Msa0319920:intron | 50.0% |
| ! | ACCTATGCTGGTTATCCAGG+TGG | + | chr2_4:20006597-20006616 | Msa0319920:intron | 50.0% |
| TCCACCTGGATAACCAGCAT+AGG | - | chr2_4:20006601-20006620 | None:intergenic | 50.0% | |
| GGCCTAACCAATTTCACCAC+AGG | + | chr2_4:20006793-20006812 | Msa0319920:CDS | 50.0% | |
| GCCTTTGCCTGTGGTGAAAT+TGG | - | chr2_4:20006803-20006822 | None:intergenic | 50.0% | |
| TTTCACCACAGGCAAAGGCA+AGG | + | chr2_4:20006804-20006823 | Msa0319920:CDS | 50.0% | |
| ATTGACCTTGCCTTTGCCTG+TGG | - | chr2_4:20006812-20006831 | None:intergenic | 50.0% | |
| CACTTCAAGAGGTCGAACGT+TGG | - | chr2_4:20006845-20006864 | None:intergenic | 50.0% | |
| TGCAGCATTGTCCGCAAGAT+GGG | + | chr2_4:20006871-20006890 | Msa0319920:CDS | 50.0% | |
| CTTCGCCATATCCCATCTTG+CGG | - | chr2_4:20006885-20006904 | None:intergenic | 50.0% | |
| ! | CACGTTTTGCACGGCTGAAC+TGG | + | chr2_4:20004254-20004273 | Msa0319920:five_prime_UTR | 55.0% |
| GACCCAACATCCTACTTCGG+AGG | + | chr2_4:20004681-20004700 | Msa0319920:CDS | 55.0% | |
| GTGTCGGACACATGGACATG+AGG | - | chr2_4:20004991-20005010 | None:intergenic | 55.0% | |
| CACGACATGTGTCGGACACA+TGG | - | chr2_4:20004999-20005018 | None:intergenic | 55.0% | |
| GTGTCCGACACATGTCGTGT+CGG | + | chr2_4:20005000-20005019 | Msa0319920:intron | 55.0% | |
| CACATGTCGTGTCGGATGTG+TGG | + | chr2_4:20005008-20005027 | Msa0319920:intron | 55.0% | |
| !! | CACTCAAGCGTTGACATCGC+CGG | - | chr2_4:20005598-20005617 | None:intergenic | 55.0% |
| GGTAAACTACAGCGTCCACC+TGG | - | chr2_4:20006615-20006634 | None:intergenic | 55.0% | |
| GTGCAGCATTGTCCGCAAGA+TGG | + | chr2_4:20006870-20006889 | Msa0319920:CDS | 55.0% | |
| CGCAAGATGGGATATGGCGA+AGG | + | chr2_4:20006883-20006902 | Msa0319920:CDS | 55.0% | |
| GATATGGCGAAGGCTTCCAG+TGG | + | chr2_4:20006893-20006912 | Msa0319920:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 20004249 | 20007200 | 20004249 | ID=Msa0319920;Name=Msa0319920 |
| chr2_4 | mRNA | 20004249 | 20007200 | 20004249 | ID=Msa0319920-mRNA-1;Parent=Msa0319920;Name=Msa0319920-mRNA-1;_AED=0.05;_eAED=0.05;_QI=196|1|1|1|1|1|3|264|193 |
| chr2_4 | exon | 20004249 | 20004573 | 20004249 | ID=Msa0319920-mRNA-1:exon:7388;Parent=Msa0319920-mRNA-1 |
| chr2_4 | exon | 20004661 | 20004792 | 20004661 | ID=Msa0319920-mRNA-1:exon:7389;Parent=Msa0319920-mRNA-1 |
| chr2_4 | exon | 20006616 | 20007200 | 20006616 | ID=Msa0319920-mRNA-1:exon:7390;Parent=Msa0319920-mRNA-1 |
| chr2_4 | five_prime_UTR | 20004249 | 20004444 | 20004249 | ID=Msa0319920-mRNA-1:five_prime_utr;Parent=Msa0319920-mRNA-1 |
| chr2_4 | CDS | 20004445 | 20004573 | 20004445 | ID=Msa0319920-mRNA-1:cds;Parent=Msa0319920-mRNA-1 |
| chr2_4 | CDS | 20004661 | 20004792 | 20004661 | ID=Msa0319920-mRNA-1:cds;Parent=Msa0319920-mRNA-1 |
| chr2_4 | CDS | 20006616 | 20006936 | 20006616 | ID=Msa0319920-mRNA-1:cds;Parent=Msa0319920-mRNA-1 |
| chr2_4 | three_prime_UTR | 20006937 | 20007200 | 20006937 | ID=Msa0319920-mRNA-1:three_prime_utr;Parent=Msa0319920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
