AlfalfaGEDB | Msa1030440

M. sativa cultivar zhongmu-4 / Msa1030440

KEGG: K01889
GO: GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576
PFAM: PF01409.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1030440	XP_003624422.2	88.550	131	6	2	1	123	1	130	1.43e-53	199
Msa1030440	XP_003624422.2	95.338	429	11	2	150	570	1	428	0.0	824

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1030440	sp\|Q94K73\|SYFM_ARATH	78.372	393	76	2	187	570	37	429	0.0	658
Msa1030440	sp\|Q94K73\|SYFM_ARATH	64.894	94	25	1	38	123	37	130	8.24e-32	130

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1030440	G7KW40	88.550	131	6	2	1	123	1	130	6.85e-54	199
Msa1030440	G7KW40	95.338	429	11	2	150	570	1	428	0.0	824

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa1030440	0.868948	4.466536e-66	-8.615850e-47
Msa0001460	Msa1030440	0.857238	1.870185e-62	-8.615850e-47
Msa0001510	Msa1030440	0.855928	4.537821e-62	-8.615850e-47
Msa0001540	Msa1030440	0.862805	3.907034e-64	-8.615850e-47
Msa0002060	Msa1030440	0.850576	1.553224e-60	-8.615850e-47
Msa0002690	Msa1030440	0.808220	3.446991e-50	-8.615850e-47
Msa0002700	Msa1030440	0.811683	6.191569e-51	-8.615850e-47
Msa0005690	Msa1030440	0.832443	9.427737e-56	-8.615850e-47
Msa0006580	Msa1030440	0.807502	4.897906e-50	-8.615850e-47
Msa0007570	Msa1030440	0.829073	6.312794e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1030440	MtrunA17_Chr7g0251481	95.338	429	11	2	150	570	1	428	0.0	824
Msa1030440	MtrunA17_Chr7g0251481	88.550	131	6	2	1	123	1	130	1.32e-57	199

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1030440	AT3G58140.1	78.372	393	76	2	187	570	37	429	0.0	658
Msa1030440	AT3G58140.1	64.894	94	25	1	38	123	37	130	8.38e-33	130

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Find 130 sgRNAs with CRISPR-Local

Find 890 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGGTTGGAGGTTCTG+GGG	0.591542	7_1:-64519273	Msa1030440:CDS
AAACTGATGTCCTTGTAGCA+AGG	0.623794	7_1:+64518170	None:intergenic
AAATGGGAAATCTAATAATG+TGG	0.604431	7_1:-64519218	Msa1030440:CDS
AACTTGGAATGCAGCTTCAT+AGG	0.462486	7_1:-64522449	Msa1030440:CDS
AACTTGGAATGCAGCTTCAT+AGG	0.462486	7_1:-64529833	Msa1030440:CDS
AAGACCTAAAGAAATGCCTT+GGG	0.483761	7_1:-64521335	Msa1030440:CDS
AAGAGATTCTGAAAAGAAAT+GGG	0.459133	7_1:-64519234	Msa1030440:CDS
AAGTAAGAAAATAATAATTT+TGG	0.264439	7_1:-64515824	Msa1030440:three_prime_UTR
AATAATGTGGCTTGGGCTTT+TGG	0.185517	7_1:-64519205	Msa1030440:CDS
AATTTGTGTGAAGTTGTTAG+AGG	0.365693	7_1:-64518119	Msa1030440:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTCAAAGTAATAATAGCCTA+AGG	-	chr7_1:64515846-64515865	Msa1030440:three_prime_UTR	30.0%
TTCATTCATTTGGAGAAAAG+GGG	+	chr7_1:64516425-64516444	None:intergenic	30.0%
CTTCATTCATTTGGAGAAAA+GGG	+	chr7_1:64516426-64516445	None:intergenic	30.0%
ACTTCATTCATTTGGAGAAA+AGG	+	chr7_1:64516427-64516446	None:intergenic	30.0%
GTCTTCAAACTTCATTCATT+TGG	+	chr7_1:64516435-64516454	None:intergenic	30.0%
GTGACACTTAATATAAGACA+GGG	+	chr7_1:64517106-64517125	None:intergenic	30.0%
AGTGACACTTAATATAAGAC+AGG	+	chr7_1:64517107-64517126	None:intergenic	30.0%
GTTTATACAAAGTTATGCTC+TGG	+	chr7_1:64517968-64517987	None:intergenic	30.0%
AATAAAGATGAAGGAGATGA+AGG	-	chr7_1:64518174-64518193	Msa1030440:CDS	30.0%
TTATAGGACACCAAATTTGT+AGG	-	chr7_1:64518281-64518300	Msa1030440:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	64515803	64530763	64515803	ID=Msa1030440;Name=Msa1030440
chr7_1	mRNA	64515803	64530763	64515803	ID=Msa1030440-mRNA-1;Parent=Msa1030440;Name=Msa1030440-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0\|0.75\|0.76\|1\|0.91\|0.92\|13\|332\|570
chr7_1	exon	64515803	64516185	64515803	ID=Msa1030440-mRNA-1:exon:14202;Parent=Msa1030440-mRNA-1
chr7_1	exon	64516295	64516408	64516295	ID=Msa1030440-mRNA-1:exon:14201;Parent=Msa1030440-mRNA-1
chr7_1	exon	64518094	64518198	64518094	ID=Msa1030440-mRNA-1:exon:14200;Parent=Msa1030440-mRNA-1
chr7_1	exon	64518898	64518942	64518898	ID=Msa1030440-mRNA-1:exon:14199;Parent=Msa1030440-mRNA-1
chr7_1	exon	64519117	64519296	64519117	ID=Msa1030440-mRNA-1:exon:14198;Parent=Msa1030440-mRNA-1
chr7_1	exon	64520522	64520598	64520522	ID=Msa1030440-mRNA-1:exon:14197;Parent=Msa1030440-mRNA-1
chr7_1	exon	64521313	64521430	64521313	ID=Msa1030440-mRNA-1:exon:14196;Parent=Msa1030440-mRNA-1
chr7_1	exon	64521506	64521712	64521506	ID=Msa1030440-mRNA-1:exon:14195;Parent=Msa1030440-mRNA-1
chr7_1	exon	64522332	64522525	64522332	ID=Msa1030440-mRNA-1:exon:14194;Parent=Msa1030440-mRNA-1
chr7_1	exon	64523205	64523407	64523205	ID=Msa1030440-mRNA-1:exon:14193;Parent=Msa1030440-mRNA-1
chr7_1	exon	64523918	64523967	64523918	ID=Msa1030440-mRNA-1:exon:14192;Parent=Msa1030440-mRNA-1
chr7_1	exon	64529716	64529909	64529716	ID=Msa1030440-mRNA-1:exon:14191;Parent=Msa1030440-mRNA-1
chr7_1	exon	64530589	64530763	64530589	ID=Msa1030440-mRNA-1:exon:14190;Parent=Msa1030440-mRNA-1
chr7_1	CDS	64530589	64530763	64530589	ID=Msa1030440-mRNA-1:cds;Parent=Msa1030440-mRNA-1
chr7_1	CDS	64529716	64529909	64529716	ID=Msa1030440-mRNA-1:cds;Parent=Msa1030440-mRNA-1
chr7_1	CDS	64523918	64523967	64523918	ID=Msa1030440-mRNA-1:cds;Parent=Msa1030440-mRNA-1
chr7_1	CDS	64523205	64523407	64523205	ID=Msa1030440-mRNA-1:cds;Parent=Msa1030440-mRNA-1
chr7_1	CDS	64522332	64522525	64522332	ID=Msa1030440-mRNA-1:cds;Parent=Msa1030440-mRNA-1
chr7_1	CDS	64521506	64521712	64521506	ID=Msa1030440-mRNA-1:cds;Parent=Msa1030440-mRNA-1
chr7_1	CDS	64521313	64521430	64521313	ID=Msa1030440-mRNA-1:cds;Parent=Msa1030440-mRNA-1
chr7_1	CDS	64520522	64520598	64520522	ID=Msa1030440-mRNA-1:cds;Parent=Msa1030440-mRNA-1
chr7_1	CDS	64519117	64519296	64519117	ID=Msa1030440-mRNA-1:cds;Parent=Msa1030440-mRNA-1
chr7_1	CDS	64518898	64518942	64518898	ID=Msa1030440-mRNA-1:cds;Parent=Msa1030440-mRNA-1
chr7_1	CDS	64518094	64518198	64518094	ID=Msa1030440-mRNA-1:cds;Parent=Msa1030440-mRNA-1
chr7_1	CDS	64516295	64516408	64516295	ID=Msa1030440-mRNA-1:cds;Parent=Msa1030440-mRNA-1
chr7_1	CDS	64516135	64516185	64516135	ID=Msa1030440-mRNA-1:cds;Parent=Msa1030440-mRNA-1
chr7_1	three_prime_UTR	64515803	64516134	64515803	ID=Msa1030440-mRNA-1:three_prime_utr;Parent=Msa1030440-mRNA-1

Gene Sequence

>Msa1030440

ATGATGATCTCTTCAGTGCATAATGCTACACTTTCGCTATTTCGTCAAAGTAATAATAGCCTAAGGACCTTAAAATTTTGTTTACCTTTCTCATCTTCCGCTGCTTCTCTCTCTGCCAACAACCTTTCTCGCAAGAAATCGAAGCAGCTGCCAGTTCTCTCTGCAGTGGAGATTGATGTAGTGAAGGACGACGATCCAACAAATAATGTTCCAGACAGCATATTTTCAAAACTTGGAATGCAGCTTCATAGGAGGGATCAACACCCTCTTGGGATAATCAAGAATGCAATATATGACTATTTTGACACAAATTATTCAAACAAGTTCAATAAGTTTGACGACCTTTCTCCCATTGTTTCACTAAAGCAGCTACACTTCACACTCAGAAAGAACTCTCTTCCATTCGCTCTTCGCTCTCTAAATCGAGTGCAAGTTATCTGTGTGGGAATGATGATCTCTTCAGTGCATAATGCTACACTTTCGCTATTTCGTCAAAGTAATAATAGCCTAAGGACCTTAAAATTTTGTTTACCTTTCTCATCTTCCGCTGCTTCTCTCTCTGCCAACAACCTTTCTCGCAAGAAATCGAAGCAGCTGCCAGTTCTCTCTGCAGTGGAGATTGATGTAGTGAAGGACGACGATCCAACAAATAATGTTCCAGACAGCATATTTTCAAAACTTGGAATGCAGCTTCATAGGAGGGATCAACACCCTCTTGGGATAATCAAGAATGCAATATATGACTATTTTGACACAAATTATTCAAACAAGTTCAATAAGTTTGACGACCTTTCTCCCATTGTTTCACTAAAGCAGAACTTTGATGATGTCTTGGTTCCTGAAGACCATGTGAGTAGGAGCTATAACGATACATACTATATAGACCCTCAAACTGTTTTAAGGTGCCACACAAGTGCTCATCAGGCAGAATTATTGAGAGATGGACAGACTCACTTCCTTGTTACTGGAGATGTTTATCGAAGGGATTCAATTGATTCTACTCATTACCCTGTCTTCCATCAAATGGAAGGCTTTCGGGTTTTTGTTCCAGACGAATGGGAGGCATCTGGGACGGATGGCACATCATTTGCAGCAGAAGACCTAAAGAAATGCCTTGGGGGTCTAGCACGCCATTTATTTGGTGACGTGGAAATGCGCTGGGTTGATACCTATTTCCCATTTACCAATCCATCATTTGAACTTGAAATATATTTCAAGGAAAAGTGGTTGGAGGTTCTGGGGTGTGGAGTGACAGAGCAAGAGATTCTGAAAAGAAATGGGAAATCTAATAATGTGGCTTGGGCTTTTGGTCTAGGTTTGGAGAGGTTAGCTATGGTTCTATTTGACATACCGGATATTCGTCTCTTTTGGTCAGATGATGAGCGATTTACCTCCCAGTTCTCCAAGGGCCAGTTAGGGATCAAATTTAAGCCGTTTTCAAAGTATCCTCCTTGCTACAAGGACATCAGTTTCTGGATCAATGAATCATTTACTGAAAACAATTTGTGTGAAGTTGTTAGAGGAGTAGCGGGAGATCTTGTTGAAGAGGTGCAACTAATAGACAATTTCACCAACAAGAAAGGAATGACTAGCCACTGCTATAGGATTGCATATAGATCTATGGAACGTTCTCTCACCGATGATGAAATTAACAATCTGCAGTGGAAAGTAAGAGACCTGGTACAGAACAAATTGGAAGTTGTCATAAGATGA

Protein sequence

>Msa1030440

MMISSVHNATLSLFRQSNNSLRTLKFCLPFSSSAASLSANNLSRKKSKQLPVLSAVEIDVVKDDDPTNNVPDSIFSKLGMQLHRRDQHPLGIIKNAIYDYFDTNYSNKFNKFDDLSPIVSLKQLHFTLRKNSLPFALRSLNRVQVICVGMMISSVHNATLSLFRQSNNSLRTLKFCLPFSSSAASLSANNLSRKKSKQLPVLSAVEIDVVKDDDPTNNVPDSIFSKLGMQLHRRDQHPLGIIKNAIYDYFDTNYSNKFNKFDDLSPIVSLKQNFDDVLVPEDHVSRSYNDTYYIDPQTVLRCHTSAHQAELLRDGQTHFLVTGDVYRRDSIDSTHYPVFHQMEGFRVFVPDEWEASGTDGTSFAAEDLKKCLGGLARHLFGDVEMRWVDTYFPFTNPSFELEIYFKEKWLEVLGCGVTEQEILKRNGKSNNVAWAFGLGLERLAMVLFDIPDIRLFWSDDERFTSQFSKGQLGIKFKPFSKYPPCYKDISFWINESFTENNLCEVVRGVAGDLVEEVQLIDNFTNKKGMTSHCYRIAYRSMERSLTDDEINNLQWKVRDLVQNKLEVVIR*