AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0137810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0137810 MtrunA17_Chr1g0210231 97.073 410 9 1 1 407 1 410 0.0 819
Msa0137810 MtrunA17_Chr8g0360481 68.389 329 104 0 66 394 51 379 8.25e-160 464
Msa0137810 MtrunA17_Chr1g0188261 52.381 357 163 3 44 398 12 363 1.02e-120 355
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0137810 AT3G10420.2 69.811 424 105 5 1 404 1 421 0.0 557
Msa0137810 AT3G10420.1 69.811 424 105 5 1 404 1 421 0.0 554
Msa0137810 AT1G73170.3 66.773 313 104 0 82 394 80 392 7.73e-151 442
Msa0137810 AT1G73170.1 66.773 313 104 0 82 394 80 392 1.48e-150 442
Msa0137810 AT1G73170.2 69.478 249 76 0 146 394 16 264 1.11e-125 374
Msa0137810 AT1G33290.1 53.714 350 148 6 57 398 19 362 1.34e-122 360
Msa0137810 AT1G33290.3 58.276 290 116 3 112 398 1 288 3.94e-116 341
Msa0137810 AT1G33290.2 49.099 222 88 6 57 258 19 235 2.19e-57 190
Msa0137810 AT1G33290.2 51.389 72 34 1 327 398 216 286 2.44e-15 76.6
Msa0137810 AT1G73170.4 67.797 118 38 0 277 394 1 118 3.24e-49 171

Find 126 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAAGCTCCGCTGTGGTTT+CGG 0.180628 1_3:+70441259 None:intergenic
ACCATTATAATTGATGAAAT+TGG 0.186337 1_3:-70439835 Msa0137810:CDS
ATTGAAGTTGTTATGGATTT+AGG 0.190737 1_3:-70441167 Msa0137810:CDS
TTCAACTGTGGATGCTATTT+TGG 0.203491 1_3:-70439342 Msa0137810:CDS
ATTTACTTAACAACATTATT+AGG 0.206093 1_3:+70442013 None:intergenic
TCAAGCTCCGCTGTGGTTTC+GGG 0.211037 1_3:+70441260 None:intergenic
GGTTTGGTTGGTATTATTAT+TGG 0.224476 1_3:+70441782 None:intergenic
TCATCAATTATAATGGTTTC+AGG 0.225693 1_3:+70439841 None:intergenic
CTAGATTCCCTTCTGGTGAT+TGG 0.254727 1_3:-70441130 Msa0137810:CDS
TCCAATTTCATCAATTATAA+TGG 0.266424 1_3:+70439834 None:intergenic
TTAAAATGTTGACCTGATTA+AGG 0.273025 1_3:+70440348 None:intergenic
GCGTAAATCATCATGGTTAA+TGG 0.273696 1_3:+70441091 None:intergenic
AGAAGCTGAAGAAGATGATT+TGG 0.281013 1_3:+70441349 None:intergenic
AGCGGAGCTTGATATGTTTC+TGG 0.292311 1_3:-70441249 Msa0137810:CDS
CCACACAAAAGTACACATTT+TGG 0.292850 1_3:+70441836 None:intergenic
GTGGATACATCCAATGAAAT+TGG 0.294748 1_3:-70440092 Msa0137810:CDS
AAAACAATTTATTGTTGTTA+AGG 0.301161 1_3:+70441420 None:intergenic
AGAGAAGAGGGAAGATTCTT+TGG 0.328933 1_3:+70441681 None:intergenic
CCTTATCTTCAGATCCTTGT+TGG 0.338669 1_3:-70439712 Msa0137810:CDS
TTTACGCCACGCCATTTCTA+AGG 0.343073 1_3:-70441075 Msa0137810:intron
TAACAGACACACAAACAAAT+AGG 0.352563 1_3:-70441523 Msa0137810:five_prime_UTR
CCACTATTACTACGCGCTTC+AGG 0.363898 1_3:+70440111 None:intergenic
CTATGCTGCATATTCACATT+TGG 0.364142 1_3:+70440014 None:intergenic
ATGAACACGACATTCAGTTT+TGG 0.374118 1_3:+70439376 None:intergenic
TGGACTCATTGAAGTTGTTA+TGG 0.376901 1_3:-70441174 Msa0137810:CDS
TAGATTCCCTTCTGGTGATT+GGG 0.380201 1_3:-70441129 Msa0137810:CDS
TCCGTCACCTCCAATTTCAT+TGG 0.385683 1_3:+70440082 None:intergenic
TCTATTCTATGGGAAGAAAA+AGG 0.387338 1_3:+70441719 None:intergenic
CTGAATGTCGTGTTCATCAT+AGG 0.387994 1_3:-70439370 Msa0137810:CDS
CCTCTTGCTAGATTCCCTTC+TGG 0.390859 1_3:-70441137 Msa0137810:CDS
TGCTAAAATCATACATGATC+TGG 0.404375 1_3:-70440425 Msa0137810:CDS
TGATGTAATAATTGAAGAAT+GGG 0.406047 1_3:+70441645 None:intergenic
CAGTATTTGAAGTCCGTCAT+TGG 0.410784 1_3:-70439196 Msa0137810:CDS
ATTCTTCATTATGCTTTCAA+TGG 0.418087 1_3:+70439735 None:intergenic
CGTAAATCATCATGGTTAAT+GGG 0.421646 1_3:+70441092 None:intergenic
TTGGTAAAACTACCTTAATC+AGG 0.424584 1_3:-70440360 Msa0137810:intron
TTCCTCATGCAGGCATAGGC+AGG 0.427872 1_3:-70440055 Msa0137810:CDS
TGCTCAAAGAGGAGTTCAAT+TGG 0.429380 1_3:-70439779 Msa0137810:CDS
ATGATGTAATAATTGAAGAA+TGG 0.431118 1_3:+70441644 None:intergenic
TGAGGAAGGAGGTTCTATAT+TGG 0.434005 1_3:-70440401 Msa0137810:CDS
GGAGGTTCTATATTGGTCAT+TGG 0.436397 1_3:-70440394 Msa0137810:CDS
GTTTCTGGAACTTCTTCCAT+TGG 0.437811 1_3:-70441234 Msa0137810:CDS
TCAGAGGGTCTTCGGATTTG+AGG 0.438891 1_3:+70441326 None:intergenic
GATCGTTACCCAATCAGAAA+TGG 0.439746 1_3:-70441305 Msa0137810:CDS
GTGAGGATCCATTTCTGATT+GGG 0.440382 1_3:+70441297 None:intergenic
GGTAACGATCAGAGGGTCTT+CGG 0.440923 1_3:+70441318 None:intergenic
ATATTGGTCATTGGACCTCC+TGG 0.442400 1_3:-70440385 Msa0137810:CDS
TGAGATGAAAAGTAGTGAAA+GGG 0.445188 1_3:+70441760 None:intergenic
CAATGACGGACTTCAAATAC+TGG 0.449272 1_3:+70439197 None:intergenic
AGAGTAGAGTACCTTAGAAA+TGG 0.453739 1_3:+70441064 None:intergenic
GGTGAGGATCCATTTCTGAT+TGG 0.455488 1_3:+70441296 None:intergenic
AAGAAAAGTCCCGATGGTAT+AGG 0.455686 1_3:-70441888 Msa0137810:five_prime_UTR
GATCCTTGTTGGTGGTATAG+AGG 0.456580 1_3:-70439701 Msa0137810:intron
GAAAAGTAGTGAAAGGGGTT+TGG 0.459247 1_3:+70441766 None:intergenic
AGTATTTGAAGTCCGTCATT+GGG 0.460558 1_3:-70439195 Msa0137810:CDS
GTGAGATGAAAAGTAGTGAA+AGG 0.462683 1_3:+70441759 None:intergenic
TTGAATAGAGTGTAACTCTC+GGG 0.466591 1_3:-70439487 Msa0137810:intron
CAATGAGTCCACCAATCTCT+TGG 0.470658 1_3:+70441186 None:intergenic
CCTGAAGCGCGTAGTAATAG+TGG 0.478310 1_3:-70440111 Msa0137810:CDS
CAAAGAGGAGTTCAATTGGT+TGG 0.488544 1_3:-70439775 Msa0137810:CDS
AAATGAAAGTGAAGAGAAGA+GGG 0.488893 1_3:+70441669 None:intergenic
CCAACAAGGATCTGAAGATA+AGG 0.493089 1_3:+70439712 None:intergenic
CAATTGGTTGGAACAGCACA+TGG 0.496072 1_3:-70439763 Msa0137810:CDS
TATCTTCAGATCCTTGTTGG+TGG 0.497033 1_3:-70439709 Msa0137810:CDS
GAGTGTAACTCTCGGGGATG+AGG 0.503582 1_3:-70439480 Msa0137810:CDS
AATCGTCAGATGCAAATCAT+TGG 0.503745 1_3:-70440484 Msa0137810:CDS
CTCTCGGGGATGAGGAAGCC+AGG 0.505259 1_3:-70439472 Msa0137810:CDS
CAGAGAGACTGCTAGGATGC+TGG 0.505835 1_3:-70440144 Msa0137810:CDS
AGTAGTGAAAGGGGTTTGGT+TGG 0.506382 1_3:+70441770 None:intergenic
ATTGGCCTTACTTGTCGTGT+TGG 0.509211 1_3:-70440466 Msa0137810:CDS
TGCAAAAGACAATTCTAGAA+AGG 0.510028 1_3:-70439439 Msa0137810:CDS
TTTGCGTGACGGAAAACCAT+TGG 0.514124 1_3:-70441859 Msa0137810:five_prime_UTR
CTCGACCAACACGACAAGTA+AGG 0.517747 1_3:+70440461 None:intergenic
GTCATTGGACCTCCTGGTGT+TGG 0.524184 1_3:-70440379 Msa0137810:CDS
TTGTATCGCCACCAAGAGAT+TGG 0.524330 1_3:-70441197 Msa0137810:CDS
TGCATCGTATAAGTGCAATT+CGG 0.526874 1_3:-70440507 Msa0137810:CDS
AACTTCTTCCATTGGAGATG+AGG 0.532842 1_3:-70441226 Msa0137810:CDS
AAAATGAAAGTGAAGAGAAG+AGG 0.535353 1_3:+70441668 None:intergenic
GGGATGAGGAAGCCAGGAAA+AGG 0.537182 1_3:-70439466 Msa0137810:CDS
TCCAATGAAATTGGAGGTGA+CGG 0.539462 1_3:-70440083 Msa0137810:CDS
ATGCAGGCATAGGCAGGGCG+AGG 0.546724 1_3:-70440049 Msa0137810:CDS
TTGATCTTCACTGCACCTCA+TGG 0.546851 1_3:-70441457 Msa0137810:CDS
TCTTCCATTGGAGATGAGGA+TGG 0.549063 1_3:-70441222 Msa0137810:CDS
GACGGAGATGTTCCTCATGC+AGG 0.549892 1_3:-70440065 Msa0137810:CDS
AATCATACATGATCTGGTTG+AGG 0.551401 1_3:-70440419 Msa0137810:CDS
GATGTTCCTCATGCAGGCAT+AGG 0.555685 1_3:-70440059 Msa0137810:CDS
TTTGAATAGAGTGTAACTCT+CGG 0.564422 1_3:-70439488 Msa0137810:intron
TTGAACTCCTCTTTGAGCAA+TGG 0.567809 1_3:+70439783 None:intergenic
AATTCCATCCTCATCTCCAA+TGG 0.572936 1_3:+70441218 None:intergenic
CAAGTCTTCTTGATGAACGA+TGG 0.574288 1_3:+70441390 None:intergenic
CAGGCATAGGCAGGGCGAGG+AGG 0.576115 1_3:-70440046 Msa0137810:CDS
GAGATGAAAAGTAGTGAAAG+GGG 0.578114 1_3:+70441761 None:intergenic
TCTGATTGGGTAACGATCAG+AGG 0.580957 1_3:+70441310 None:intergenic
TGAGTCCACCAATCTCTTGG+TGG 0.584820 1_3:+70441189 None:intergenic
TCAACAGCACACGTAAATGT+AGG 0.586604 1_3:+70439407 None:intergenic
TACTTGTCGTGTTGGTCGAG+CGG 0.590539 1_3:-70440458 Msa0137810:CDS
GATTGTGCAGAGAGACTGCT+AGG 0.591378 1_3:-70440151 Msa0137810:intron
TTCACTGCACCTCATGGCAA+AGG 0.591521 1_3:-70441451 Msa0137810:CDS
GATACATCCAATGAAATTGG+AGG 0.595729 1_3:-70440089 Msa0137810:CDS
GCAAGTACCATTGCTCAAAG+AGG 0.597613 1_3:-70439790 Msa0137810:CDS
TATCGCCACCAAGAGATTGG+TGG 0.601041 1_3:-70441194 Msa0137810:CDS
ATACATGATCTGGTTGAGGA+AGG 0.605235 1_3:-70440415 Msa0137810:CDS
CTGATTGGGTAACGATCAGA+GGG 0.608679 1_3:+70441311 None:intergenic
CATGATCTGGTTGAGGAAGG+AGG 0.608961 1_3:-70440412 Msa0137810:CDS
AAGACAATTCTAGAAAGGAA+AGG 0.613874 1_3:-70439434 Msa0137810:CDS
TCCTCATGCAGGCATAGGCA+GGG 0.617902 1_3:-70440054 Msa0137810:CDS
TGGCGTGGCGTAAATCATCA+TGG 0.622075 1_3:+70441084 None:intergenic
GAAATGACCCAATCACCAGA+AGG 0.627070 1_3:+70441122 None:intergenic
CGTGTTGGTCGAGCGGTGAG+TGG 0.630353 1_3:-70440451 Msa0137810:CDS
GCCCTGCCTATGCCTGCATG+AGG 0.636859 1_3:+70440053 None:intergenic
GTTGTTGTTCCTTTGCCATG+AGG 0.637346 1_3:+70441442 None:intergenic
GTTTCGGGTTGTGAATTCGA+CGG 0.639045 1_3:+70441275 None:intergenic
ATGAGCTATCAATACCAGAT+CGG 0.639378 1_3:+70440530 None:intergenic
AAATGACCCAATCACCAGAA+GGG 0.644980 1_3:+70441123 None:intergenic
GGGTTGTGAATTCGACGGTG+AGG 0.645266 1_3:+70441280 None:intergenic
TGAATAGAGTGTAACTCTCG+GGG 0.654334 1_3:-70439486 Msa0137810:intron
AAAAGAAAGAAAAGTCCCGA+TGG 0.655483 1_3:-70441894 Msa0137810:five_prime_UTR
AGAGTACCTTAGAAATGGCG+TGG 0.660342 1_3:+70441069 None:intergenic
CCAGAAGGGAATCTAGCAAG+AGG 0.661778 1_3:+70441137 None:intergenic
TGACGGACTTCAAATACTGG+AGG 0.672492 1_3:+70439200 None:intergenic
AAACATATCAAGCTCCGCTG+TGG 0.679973 1_3:+70441253 None:intergenic
TTATTGGTAAGAAGAATCAG+AGG 0.681489 1_3:+70441798 None:intergenic
GCACCTCTATACCACCAACA+AGG 0.695466 1_3:+70439698 None:intergenic
ACAGCACACGTAAATGTAGG+TGG 0.701363 1_3:+70439410 None:intergenic
TCATAGGTTAGATTCAACTG+TGG 0.703566 1_3:-70439354 Msa0137810:CDS
TTCACAACCCGAAACCACAG+CGG 0.742134 1_3:-70441267 Msa0137810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATTATTATGAATAAG+TGG + chr1_3:70440229-70440248 None:intergenic 10.0%
!! TTAAACTAGATAAAATAAAA+AGG + chr1_3:70441048-70441067 None:intergenic 10.0%
!!! TAGTTTGTTGTTAAATTTTT+GGG + chr1_3:70439192-70439211 None:intergenic 15.0%
!!! ATAGTTTGTTGTTAAATTTT+TGG + chr1_3:70439193-70439212 None:intergenic 15.0%
!! ATTTACTTAACAACATTATT+AGG + chr1_3:70439226-70439245 None:intergenic 15.0%
!!! AAAACAATTTATTGTTGTTA+AGG + chr1_3:70439819-70439838 None:intergenic 15.0%
!! TGTACTTTACATTAATTAAT+TGG - chr1_3:70440370-70440389 Msa0137810:CDS 15.0%
!!! ATTCCTTTTATTTTTGGTTT+TGG + chr1_3:70439289-70439308 None:intergenic 20.0%
!!! TGGTATATTCCTTTTATTTT+TGG + chr1_3:70439295-70439314 None:intergenic 20.0%
!!! TTTTTTGTGTTCTATTCTAT+GGG + chr1_3:70439530-70439549 None:intergenic 20.0%
!!! TTTTTTTGTGTTCTATTCTA+TGG + chr1_3:70439531-70439550 None:intergenic 20.0%
!! TGATGTAATAATTGAAGAAT+GGG + chr1_3:70439594-70439613 None:intergenic 20.0%
!! ATGATGTAATAATTGAAGAA+TGG + chr1_3:70439595-70439614 None:intergenic 20.0%
!!! TCAGTTTGTATTTTTAATGT+GGG - chr1_3:70440332-70440351 Msa0137810:intron 20.0%
!! ACCATTATAATTGATGAAAT+TGG - chr1_3:70441401-70441420 Msa0137810:CDS 20.0%
!! TCCAATTTCATCAATTATAA+TGG + chr1_3:70441405-70441424 None:intergenic 20.0%
!! ATTATAAATCATAACCTTGA+AGG + chr1_3:70441586-70441605 None:intergenic 20.0%
!! GCAGTATTTATTTAGTTATT+TGG - chr1_3:70441973-70441992 Msa0137810:five_prime_UTR 20.0%
! AGACCAAAACCAAAAATAAA+AGG - chr1_3:70439283-70439302 Msa0137810:intron 25.0%
! AAAAATATTCCTATACCATC+GGG + chr1_3:70439360-70439379 None:intergenic 25.0%
! CAAAAATATTCCTATACCAT+CGG + chr1_3:70439361-70439380 None:intergenic 25.0%
!!! TGTATGTTTGAGTTTTTTTG+AGG + chr1_3:70439668-70439687 None:intergenic 25.0%
! ATTGAAGTTGTTATGGATTT+AGG - chr1_3:70440069-70440088 Msa0137810:CDS 25.0%
! AATTGTTTATCCAAAAACAG+AGG + chr1_3:70440199-70440218 None:intergenic 25.0%
!!! CTCAGTTTGTATTTTTAATG+TGG - chr1_3:70440331-70440350 Msa0137810:intron 25.0%
!!! CAGTTTGTATTTTTAATGTG+GGG - chr1_3:70440333-70440352 Msa0137810:intron 25.0%
! GTAAAGTACATAAAGAACAT+TGG + chr1_3:70440360-70440379 None:intergenic 25.0%
! ATAACTAAGTAAATGTCGAA+AGG - chr1_3:70440603-70440622 Msa0137810:intron 25.0%
!!! TTGAAGAGTAATGGATATAA+TGG - chr1_3:70440639-70440658 Msa0137810:intron 25.0%
!! TAATGGATATAATGGTTGTT+TGG - chr1_3:70440647-70440666 Msa0137810:intron 25.0%
!! GTTGTTTGGTTTATTGTTAT+AGG - chr1_3:70440661-70440680 Msa0137810:intron 25.0%
!! TTTGGTTTATTGTTATAGGT+TGG - chr1_3:70440665-70440684 Msa0137810:intron 25.0%
! TTAAAATGTTGACCTGATTA+AGG + chr1_3:70440891-70440910 None:intergenic 25.0%
! AAAATAAAAAGGAAACTGAC+AGG + chr1_3:70441037-70441056 None:intergenic 25.0%
! TCATCAATTATAATGGTTTC+AGG + chr1_3:70441398-70441417 None:intergenic 25.0%
! ATTCTTCATTATGCTTTCAA+TGG + chr1_3:70441504-70441523 None:intergenic 25.0%
!!! CTCTTATTTATTTTCCTTCA+AGG - chr1_3:70441569-70441588 Msa0137810:five_prime_UTR 25.0%
!! TTGATTCAATCTTTGAAAGA+AGG + chr1_3:70441651-70441670 None:intergenic 25.0%
! ATCAATAAACATCATTAACG+TGG + chr1_3:70441722-70441741 None:intergenic 25.0%
! ATATTCCATTATAGAAGATG+AGG + chr1_3:70441928-70441947 None:intergenic 25.0%
!! ATAGGAATATTTTTGCGTGA+CGG - chr1_3:70439366-70439385 Msa0137810:CDS 30.0%
TTATTGGTAAGAAGAATCAG+AGG + chr1_3:70439441-70439460 None:intergenic 30.0%
! GGTTTGGTTGGTATTATTAT+TGG + chr1_3:70439457-70439476 None:intergenic 30.0%
TGAGATGAAAAGTAGTGAAA+GGG + chr1_3:70439479-70439498 None:intergenic 30.0%
TCTATTCTATGGGAAGAAAA+AGG + chr1_3:70439520-70439539 None:intergenic 30.0%
AAATGAAAGTGAAGAGAAGA+GGG + chr1_3:70439570-70439589 None:intergenic 30.0%
AAAATGAAAGTGAAGAGAAG+AGG + chr1_3:70439571-70439590 None:intergenic 30.0%
TAACAGACACACAAACAAAT+AGG - chr1_3:70439713-70439732 Msa0137810:CDS 30.0%
CGTAAATCATCATGGTTAAT+GGG + chr1_3:70440147-70440166 None:intergenic 30.0%
TTCCAAATAAACAAGTCACT+TGG + chr1_3:70440286-70440305 None:intergenic 30.0%
! TTTTTGTCGTTGAAGAGTAA+TGG - chr1_3:70440630-70440649 Msa0137810:intron 30.0%
!!! GTTATAGGTTGGTGATTTTT+CGG - chr1_3:70440676-70440695 Msa0137810:intron 30.0%
TGCTAAAATCATACATGATC+TGG - chr1_3:70440811-70440830 Msa0137810:intron 30.0%
TTGGTAAAACTACCTTAATC+AGG - chr1_3:70440876-70440895 Msa0137810:intron 30.0%
! CTTTTTACTATGTCTGTATG+TGG - chr1_3:70440916-70440935 Msa0137810:intron 30.0%
TAGTACTAATCTCACTCATT+TGG - chr1_3:70441248-70441267 Msa0137810:CDS 30.0%
AATTGACTGCTTCATCTTTA+TGG - chr1_3:70441274-70441293 Msa0137810:CDS 30.0%
ATTTGCAATCTAATCTTCTG+TGG - chr1_3:70441311-70441330 Msa0137810:CDS 30.0%
TTAAATAGATCCATCCATTC+CGG - chr1_3:70441619-70441638 Msa0137810:five_prime_UTR 30.0%
! TCAATCTTTGAAAGAAGGAT+GGG + chr1_3:70441646-70441665 None:intergenic 30.0%
! TTCAATCTTTGAAAGAAGGA+TGG + chr1_3:70441647-70441666 None:intergenic 30.0%
TTTGAATAGAGTGTAACTCT+CGG - chr1_3:70441748-70441767 Msa0137810:five_prime_UTR 30.0%
! TGCAAAAGACAATTCTAGAA+AGG - chr1_3:70441797-70441816 Msa0137810:five_prime_UTR 30.0%
! AAGACAATTCTAGAAAGGAA+AGG - chr1_3:70441802-70441821 Msa0137810:five_prime_UTR 30.0%
GTATTCCTCATCTTCTATAA+TGG - chr1_3:70441920-70441939 Msa0137810:five_prime_UTR 30.0%
TAGAAAATCTTCTCTGTTAC+AGG - chr1_3:70442009-70442028 Msa0137810:five_prime_UTR 30.0%
! GGATGATTTTTCCAATGATT+TGG - chr1_3:70442062-70442081 Msa0137810:five_prime_UTR 30.0%
AAAAGAAAGAAAAGTCCCGA+TGG - chr1_3:70439342-70439361 Msa0137810:CDS 35.0%
!! AAAGTACACATTTTGGCCAA+TGG + chr1_3:70439396-70439415 None:intergenic 35.0%
!! CCACACAAAAGTACACATTT+TGG + chr1_3:70439403-70439422 None:intergenic 35.0%
! CCAAAATGTGTACTTTTGTG+TGG - chr1_3:70439400-70439419 Msa0137810:CDS 35.0%
! TACTTTTGTGTGGTGATTAG+AGG - chr1_3:70439410-70439429 Msa0137810:CDS 35.0%
GAGATGAAAAGTAGTGAAAG+GGG + chr1_3:70439478-70439497 None:intergenic 35.0%
GTGAGATGAAAAGTAGTGAA+AGG + chr1_3:70439480-70439499 None:intergenic 35.0%
AGAAGCTGAAGAAGATGATT+TGG + chr1_3:70439890-70439909 None:intergenic 35.0%
TGGACTCATTGAAGTTGTTA+TGG - chr1_3:70440062-70440081 Msa0137810:CDS 35.0%
GCGTAAATCATCATGGTTAA+TGG + chr1_3:70440148-70440167 None:intergenic 35.0%
! AGAGTAGAGTACCTTAGAAA+TGG + chr1_3:70440175-70440194 None:intergenic 35.0%
!! AGCCAAGTGACTTGTTTATT+TGG - chr1_3:70440281-70440300 Msa0137810:intron 35.0%
CATGCATCATACGTAAAAGT+GGG + chr1_3:70440421-70440440 None:intergenic 35.0%
TGATAACATACGACGAGTTT+AGG + chr1_3:70440514-70440533 None:intergenic 35.0%
CACACTACAAAAACTCAGTT+TGG + chr1_3:70440551-70440570 None:intergenic 35.0%
ATGAGCTATCAATACCAGAT+CGG + chr1_3:70440709-70440728 None:intergenic 35.0%
TGCATCGTATAAGTGCAATT+CGG - chr1_3:70440729-70440748 Msa0137810:intron 35.0%
AATCGTCAGATGCAAATCAT+TGG - chr1_3:70440752-70440771 Msa0137810:intron 35.0%
AATCATACATGATCTGGTTG+AGG - chr1_3:70440817-70440836 Msa0137810:intron 35.0%
!! GTTTTCTTTGAAAATGCCAC+TGG - chr1_3:70440991-70441010 Msa0137810:intron 35.0%
GTGGATACATCCAATGAAAT+TGG - chr1_3:70441144-70441163 Msa0137810:CDS 35.0%
GATACATCCAATGAAATTGG+AGG - chr1_3:70441147-70441166 Msa0137810:CDS 35.0%
CTATGCTGCATATTCACATT+TGG + chr1_3:70441225-70441244 None:intergenic 35.0%
! CAATCTTTGAAAGAAGGATG+GGG + chr1_3:70441645-70441664 None:intergenic 35.0%
CGCGCTATACATATTTCATT+AGG + chr1_3:70441696-70441715 None:intergenic 35.0%
TTGAATAGAGTGTAACTCTC+GGG - chr1_3:70441749-70441768 Msa0137810:five_prime_UTR 35.0%
! ATGAACACGACATTCAGTTT+TGG + chr1_3:70441863-70441882 None:intergenic 35.0%
TCATAGGTTAGATTCAACTG+TGG - chr1_3:70441882-70441901 Msa0137810:five_prime_UTR 35.0%
!! TTCAACTGTGGATGCTATTT+TGG - chr1_3:70441894-70441913 Msa0137810:five_prime_UTR 35.0%
! AGTATTTGAAGTCCGTCATT+GGG - chr1_3:70442041-70442060 Msa0137810:five_prime_UTR 35.0%
TGGAAAAATCATCCCAATGA+CGG + chr1_3:70442056-70442075 None:intergenic 35.0%
AAGAAAAGTCCCGATGGTAT+AGG - chr1_3:70439348-70439367 Msa0137810:CDS 40.0%
GAAAAGTAGTGAAAGGGGTT+TGG + chr1_3:70439473-70439492 None:intergenic 40.0%
AGAGAAGAGGGAAGATTCTT+TGG + chr1_3:70439558-70439577 None:intergenic 40.0%
CAAGTCTTCTTGATGAACGA+TGG + chr1_3:70439849-70439868 None:intergenic 40.0%
GATCGTTACCCAATCAGAAA+TGG - chr1_3:70439931-70439950 Msa0137810:intron 40.0%
GTGAGGATCCATTTCTGATT+GGG + chr1_3:70439942-70439961 None:intergenic 40.0%
!! GTTTCTGGAACTTCTTCCAT+TGG - chr1_3:70440002-70440021 Msa0137810:intron 40.0%
AACTTCTTCCATTGGAGATG+AGG - chr1_3:70440010-70440029 Msa0137810:intron 40.0%
AATTCCATCCTCATCTCCAA+TGG + chr1_3:70440021-70440040 None:intergenic 40.0%
TAGATTCCCTTCTGGTGATT+GGG - chr1_3:70440107-70440126 Msa0137810:CDS 40.0%
AAATGACCCAATCACCAGAA+GGG + chr1_3:70440116-70440135 None:intergenic 40.0%
! CTCTACTCTACCTCTGTTTT+TGG - chr1_3:70440186-70440205 Msa0137810:intron 40.0%
CCATGCATCATACGTAAAAG+TGG + chr1_3:70440422-70440441 None:intergenic 40.0%
!! CCACTTTTACGTATGATGCA+TGG - chr1_3:70440419-70440438 Msa0137810:CDS 40.0%
AGTTAGCTAGTAGCAGATAG+TGG + chr1_3:70440487-70440506 None:intergenic 40.0%
ATACATGATCTGGTTGAGGA+AGG - chr1_3:70440821-70440840 Msa0137810:intron 40.0%
TGAGGAAGGAGGTTCTATAT+TGG - chr1_3:70440835-70440854 Msa0137810:intron 40.0%
GGAGGTTCTATATTGGTCAT+TGG - chr1_3:70440842-70440861 Msa0137810:intron 40.0%
!! AAGGTAGTTTTACCAACACC+AGG + chr1_3:70440872-70440891 None:intergenic 40.0%
ACTATGTCTGTATGTGGAAC+TGG - chr1_3:70440922-70440941 Msa0137810:intron 40.0%
TCCAATGAAATTGGAGGTGA+CGG - chr1_3:70441153-70441172 Msa0137810:CDS 40.0%
TTGAACTCCTCTTTGAGCAA+TGG + chr1_3:70441456-70441475 None:intergenic 40.0%
TGCTCAAAGAGGAGTTCAAT+TGG - chr1_3:70441457-70441476 Msa0137810:CDS 40.0%
CAAAGAGGAGTTCAATTGGT+TGG - chr1_3:70441461-70441480 Msa0137810:CDS 40.0%
CCAACAAGGATCTGAAGATA+AGG + chr1_3:70441527-70441546 None:intergenic 40.0%
CCTTATCTTCAGATCCTTGT+TGG - chr1_3:70441524-70441543 Msa0137810:five_prime_UTR 40.0%
TATCTTCAGATCCTTGTTGG+TGG - chr1_3:70441527-70441546 Msa0137810:five_prime_UTR 40.0%
TGAATAGAGTGTAACTCTCG+GGG - chr1_3:70441750-70441769 Msa0137810:five_prime_UTR 40.0%
! CTTTTGCACTTTCCTTTTCC+TGG + chr1_3:70441785-70441804 None:intergenic 40.0%
TCAACAGCACACGTAAATGT+AGG + chr1_3:70441832-70441851 None:intergenic 40.0%
CTGAATGTCGTGTTCATCAT+AGG - chr1_3:70441866-70441885 Msa0137810:five_prime_UTR 40.0%
!! CAATGACGGACTTCAAATAC+TGG + chr1_3:70442042-70442061 None:intergenic 40.0%
! CAGTATTTGAAGTCCGTCAT+TGG - chr1_3:70442040-70442059 Msa0137810:five_prime_UTR 40.0%
AGCATGCTTCACCAAATCAT+TGG + chr1_3:70442076-70442095 None:intergenic 40.0%
! TTTGCGTGACGGAAAACCAT+TGG - chr1_3:70439377-70439396 Msa0137810:CDS 45.0%
! AGTAGTGAAAGGGGTTTGGT+TGG + chr1_3:70439469-70439488 None:intergenic 45.0%
TTGATCTTCACTGCACCTCA+TGG - chr1_3:70439779-70439798 Msa0137810:CDS 45.0%
! GTTGTTGTTCCTTTGCCATG+AGG + chr1_3:70439797-70439816 None:intergenic 45.0%
CTGATTGGGTAACGATCAGA+GGG + chr1_3:70439928-70439947 None:intergenic 45.0%
TCTGATTGGGTAACGATCAG+AGG + chr1_3:70439929-70439948 None:intergenic 45.0%
GGTGAGGATCCATTTCTGAT+TGG + chr1_3:70439943-70439962 None:intergenic 45.0%
!! GTTTCGGGTTGTGAATTCGA+CGG + chr1_3:70439964-70439983 None:intergenic 45.0%
AAACATATCAAGCTCCGCTG+TGG + chr1_3:70439986-70440005 None:intergenic 45.0%
AGCGGAGCTTGATATGTTTC+TGG - chr1_3:70439987-70440006 Msa0137810:intron 45.0%
TCTTCCATTGGAGATGAGGA+TGG - chr1_3:70440014-70440033 Msa0137810:CDS 45.0%
TTGTATCGCCACCAAGAGAT+TGG - chr1_3:70440039-70440058 Msa0137810:CDS 45.0%
CAATGAGTCCACCAATCTCT+TGG + chr1_3:70440053-70440072 None:intergenic 45.0%
CTAGATTCCCTTCTGGTGAT+TGG - chr1_3:70440106-70440125 Msa0137810:CDS 45.0%
GAAATGACCCAATCACCAGA+AGG + chr1_3:70440117-70440136 None:intergenic 45.0%
TTTACGCCACGCCATTTCTA+AGG - chr1_3:70440161-70440180 Msa0137810:intron 45.0%
! AGAGTACCTTAGAAATGGCG+TGG + chr1_3:70440170-70440189 None:intergenic 45.0%
! TTTTCGGATGACAACCGATC+TGG - chr1_3:70440692-70440711 Msa0137810:intron 45.0%
!! ATTGGCCTTACTTGTCGTGT+TGG - chr1_3:70440770-70440789 Msa0137810:intron 45.0%
ATATTGGTCATTGGACCTCC+TGG - chr1_3:70440851-70440870 Msa0137810:intron 45.0%
!! GTAGTTTTACCAACACCAGG+AGG + chr1_3:70440869-70440888 None:intergenic 45.0%
CAGAAACAAACACAGTCCAG+TGG + chr1_3:70441010-70441029 None:intergenic 45.0%
TCCGTCACCTCCAATTTCAT+TGG + chr1_3:70441157-70441176 None:intergenic 45.0%
GCAAGTACCATTGCTCAAAG+AGG - chr1_3:70441446-70441465 Msa0137810:CDS 45.0%
CAATTGGTTGGAACAGCACA+TGG - chr1_3:70441473-70441492 Msa0137810:CDS 45.0%
!! GATCCTTGTTGGTGGTATAG+AGG - chr1_3:70441535-70441554 Msa0137810:five_prime_UTR 45.0%
ACAGCACACGTAAATGTAGG+TGG + chr1_3:70441829-70441848 None:intergenic 45.0%
!!! ACTGTGGATGCTATTTTGGC+AGG - chr1_3:70441898-70441917 Msa0137810:five_prime_UTR 45.0%
!! TGACGGACTTCAAATACTGG+AGG + chr1_3:70442039-70442058 None:intergenic 45.0%
!!! TGTTTTTATTTTATTTTTAT+TGG + chr1_3:70439315-70439334 None:intergenic 5.0%
TTCACTGCACCTCATGGCAA+AGG - chr1_3:70439785-70439804 Msa0137810:CDS 50.0%
TCAGAGGGTCTTCGGATTTG+AGG + chr1_3:70439913-70439932 None:intergenic 50.0%
GGTAACGATCAGAGGGTCTT+CGG + chr1_3:70439921-70439940 None:intergenic 50.0%
TTCACAACCCGAAACCACAG+CGG - chr1_3:70439969-70439988 Msa0137810:intron 50.0%
ATCAAGCTCCGCTGTGGTTT+CGG + chr1_3:70439980-70439999 None:intergenic 50.0%
TATCGCCACCAAGAGATTGG+TGG - chr1_3:70440042-70440061 Msa0137810:CDS 50.0%
TGAGTCCACCAATCTCTTGG+TGG + chr1_3:70440050-70440069 None:intergenic 50.0%
CCAGAAGGGAATCTAGCAAG+AGG + chr1_3:70440102-70440121 None:intergenic 50.0%
CCTCTTGCTAGATTCCCTTC+TGG - chr1_3:70440099-70440118 Msa0137810:CDS 50.0%
TGGCGTGGCGTAAATCATCA+TGG + chr1_3:70440155-70440174 None:intergenic 50.0%
CTCGACCAACACGACAAGTA+AGG + chr1_3:70440778-70440797 None:intergenic 50.0%
! TACTTGTCGTGTTGGTCGAG+CGG - chr1_3:70440778-70440797 Msa0137810:intron 50.0%
CATGATCTGGTTGAGGAAGG+AGG - chr1_3:70440824-70440843 Msa0137810:intron 50.0%
GATTGTGCAGAGAGACTGCT+AGG - chr1_3:70441085-70441104 Msa0137810:CDS 50.0%
CCACTATTACTACGCGCTTC+AGG + chr1_3:70441128-70441147 None:intergenic 50.0%
CCTGAAGCGCGTAGTAATAG+TGG - chr1_3:70441125-70441144 Msa0137810:CDS 50.0%
GATGTTCCTCATGCAGGCAT+AGG - chr1_3:70441177-70441196 Msa0137810:CDS 50.0%
GCACCTCTATACCACCAACA+AGG + chr1_3:70441541-70441560 None:intergenic 50.0%
! CTTTGAAAGAAGGATGGGGC+CGG + chr1_3:70441641-70441660 None:intergenic 50.0%
GGGTTGTGAATTCGACGGTG+AGG + chr1_3:70439959-70439978 None:intergenic 55.0%
TCAAGCTCCGCTGTGGTTTC+GGG + chr1_3:70439979-70439998 None:intergenic 55.0%
GTCATTGGACCTCCTGGTGT+TGG - chr1_3:70440857-70440876 Msa0137810:intron 55.0%
CAGAGAGACTGCTAGGATGC+TGG - chr1_3:70441092-70441111 Msa0137810:CDS 55.0%
GACGGAGATGTTCCTCATGC+AGG - chr1_3:70441171-70441190 Msa0137810:CDS 55.0%
TTCCTCATGCAGGCATAGGC+AGG - chr1_3:70441181-70441200 Msa0137810:CDS 55.0%
TCCTCATGCAGGCATAGGCA+GGG - chr1_3:70441182-70441201 Msa0137810:CDS 55.0%
AAAGAAGGATGGGGCCGGAA+TGG + chr1_3:70441636-70441655 None:intergenic 55.0%
GAGTGTAACTCTCGGGGATG+AGG - chr1_3:70441756-70441775 Msa0137810:five_prime_UTR 55.0%
GGGATGAGGAAGCCAGGAAA+AGG - chr1_3:70441770-70441789 Msa0137810:five_prime_UTR 55.0%
AAGGATGGGGCCGGAATGGA+TGG + chr1_3:70441632-70441651 None:intergenic 60.0%
! CGTGTTGGTCGAGCGGTGAG+TGG - chr1_3:70440785-70440804 Msa0137810:intron 65.0%
GCCCTGCCTATGCCTGCATG+AGG + chr1_3:70441186-70441205 None:intergenic 65.0%
ATGCAGGCATAGGCAGGGCG+AGG - chr1_3:70441187-70441206 Msa0137810:CDS 65.0%
CTCTCGGGGATGAGGAAGCC+AGG - chr1_3:70441764-70441783 Msa0137810:five_prime_UTR 65.0%
CAGGCATAGGCAGGGCGAGG+AGG - chr1_3:70441190-70441209 Msa0137810:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 70439163 70442095 70439163 ID=Msa0137810;Name=Msa0137810
chr1_3 mRNA 70439163 70442095 70439163 ID=Msa0137810-mRNA-1;Parent=Msa0137810;Name=Msa0137810-mRNA-1;_AED=0.32;_eAED=0.32;_QI=585|1|0.83|1|1|1|6|0|407
chr1_3 exon 70439163 70439227 70439163 ID=Msa0137810-mRNA-1:exon:24457;Parent=Msa0137810-mRNA-1
chr1_3 exon 70439339 70439501 70439339 ID=Msa0137810-mRNA-1:exon:24456;Parent=Msa0137810-mRNA-1
chr1_3 exon 70439702 70439893 70439702 ID=Msa0137810-mRNA-1:exon:24455;Parent=Msa0137810-mRNA-1
chr1_3 exon 70440013 70440163 70440013 ID=Msa0137810-mRNA-1:exon:24454;Parent=Msa0137810-mRNA-1
chr1_3 exon 70440361 70440575 70440361 ID=Msa0137810-mRNA-1:exon:24453;Parent=Msa0137810-mRNA-1
chr1_3 exon 70441076 70442095 70441076 ID=Msa0137810-mRNA-1:exon:24452;Parent=Msa0137810-mRNA-1
chr1_3 five_prime_UTR 70441511 70442095 70441511 ID=Msa0137810-mRNA-1:five_prime_utr;Parent=Msa0137810-mRNA-1
chr1_3 CDS 70441076 70441510 70441076 ID=Msa0137810-mRNA-1:cds;Parent=Msa0137810-mRNA-1
chr1_3 CDS 70440361 70440575 70440361 ID=Msa0137810-mRNA-1:cds;Parent=Msa0137810-mRNA-1
chr1_3 CDS 70440013 70440163 70440013 ID=Msa0137810-mRNA-1:cds;Parent=Msa0137810-mRNA-1
chr1_3 CDS 70439702 70439893 70439702 ID=Msa0137810-mRNA-1:cds;Parent=Msa0137810-mRNA-1
chr1_3 CDS 70439339 70439501 70439339 ID=Msa0137810-mRNA-1:cds;Parent=Msa0137810-mRNA-1
chr1_3 CDS 70439163 70439227 70439163 ID=Msa0137810-mRNA-1:cds;Parent=Msa0137810-mRNA-1
Gene Sequence

>Msa0137810

ATGAGAGCAATAAATTCGCATGTTGTCTTAATTGATCTTCACTGCACCTCATGGCAAAGGAACAACAACCTTAACAACAATAAATTGTTTTCTTCATTCCATCGTTCATCAAGAAGACTTGATAAAGCGATTCAAGCTTCCAAATCATCTTCTTCAGCTTCTCCTCAAATCCGAAGACCCTCTGATCGTTACCCAATCAGAAATGGATCCTCACCGTCGAATTCACAACCCGAAACCACAGCGGAGCTTGATATGTTTCTGGAACTTCTTCCATTGGAGATGAGGATGGAATTGTATCGCCACCAAGAGATTGGTGGACTCATTGAAGTTGTTATGGATTTAGGTAGAAAACCTCTTGCTAGATTCCCTTCTGGTGATTGGGTCATTTCTCAACGACCCATTAACCATGATGATTTACGCCACGCCATTTCTAAGGTTGGTGATTTTTCGGATGACAACCGATCTGGTATTGATAGCTCATTGCATCGTATAAGTGCAATTCGGAATCGTCAGATGCAAATCATTGGCCTTACTTGTCGTGTTGGTCGAGCGGTGAGTGGCAGTGCTAAAATCATACATGATCTGGTTGAGGAAGGAGGTTCTATATTGGTCATTGGACCTCCTGGTGTTGGTAAAACTACCTTAATCAGAGAGACTGCTAGGATGCTGGCAGATGAGTTCCTGAAGCGCGTAGTAATAGTGGATACATCCAATGAAATTGGAGGTGACGGAGATGTTCCTCATGCAGGCATAGGCAGGGCGAGGAGGATGCAAGTTCCAAATGTGAATATGCAGCATAGTATTATGATTGAAGCAGTTGAAAATCATATGCCTGAAACCATTATAATTGATGAAATTGGAACAGAACTTGAAGCATTAGCAGCAAGTACCATTGCTCAAAGAGGAGTTCAATTGGTTGGAACAGCACATGGAACAACCATTGAAAGCATAATGAAGAATCCTTATCTTCAGATCCTTGTTGGTGGTATAGAGAGTGTAACTCTCGGGGATGAGGAAGCCAGGAAAAGGAAAGTGCAAAAGACAATTCTAGAAAGGAAAGGACCACCTACATTTACGTGTGCTGTTGAGATGATATCCAAAACTGAATGTCGTGTTCATCATAGGTTAGATTCAACTGTGGATGCTATTTTGGCAGGAAAACCTCCAGTATTTGAAGTCCGTCATTGGGATGATTTTTCCAATGATTTGGTGAAGCATGCT

Protein sequence

>Msa0137810

MRAINSHVVLIDLHCTSWQRNNNLNNNKLFSSFHRSSRRLDKAIQASKSSSSASPQIRRPSDRYPIRNGSSPSNSQPETTAELDMFLELLPLEMRMELYRHQEIGGLIEVVMDLGRKPLARFPSGDWVISQRPINHDDLRHAISKVGDFSDDNRSGIDSSLHRISAIRNRQMQIIGLTCRVGRAVSGSAKIIHDLVEEGGSILVIGPPGVGKTTLIRETARMLADEFLKRVVIVDTSNEIGGDGDVPHAGIGRARRMQVPNVNMQHSIMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGTTIESIMKNPYLQILVGGIESVTLGDEEARKRKVQKTILERKGPPTFTCAVEMISKTECRVHHRLDSTVDAILAGKPPVFEVRHWDDFSNDLVKHA