AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0495220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0495220 MtrunA17_Chr7g0262441 89.280 625 39 2 5 602 1 624 0.0 1017
Msa0495220 MtrunA17_Chr4g0047731 63.470 657 179 8 5 602 1 655 0.0 768
Msa0495220 MtrunA17_Chr4g0014481 48.792 662 260 9 5 602 1 647 0.0 542
Msa0495220 MtrunA17_Chr4g0014471 60.000 40 16 0 563 602 3 42 1.33e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0495220 AT1G61040.3 62.787 567 197 8 43 602 84 643 0.0 629
Msa0495220 AT1G61040.2 62.787 567 197 8 43 602 84 643 0.0 629
Msa0495220 AT1G61040.1 62.787 567 197 8 43 602 84 643 0.0 629

Find 177 sgRNAs with CRISPR-Local

Find 526 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACTTACAAAATGGTTTA+TGG 0.170699 3_4:+24199134 Msa0495220:CDS
AGAATTCAGATCCAGGTTTA+TGG 0.177772 3_4:+24200587 Msa0495220:three_prime_UTR
CGTCCTTCTCCCGAGATTTC+CGG 0.188455 3_4:-24199680 None:intergenic
GGGAGTTCAGGCAGGGTTTA+TGG 0.216936 3_4:+24200103 Msa0495220:CDS
AACCTTGAAGGGTTACAAAT+TGG 0.223889 3_4:+24200699 Msa0495220:three_prime_UTR
AAAGAGGGGTCTAAAATTTC+AGG 0.225292 3_4:+24198910 Msa0495220:CDS
TGGCTTGAGCTACTGAAATT+AGG 0.237330 3_4:-24198961 None:intergenic
GCTTTCAATGCTTTATTAAC+TGG 0.248153 3_4:-24199777 None:intergenic
AGTGTCTTTGTAATGTTTAT+TGG 0.265714 3_4:+24200621 Msa0495220:three_prime_UTR
TGCCACATTGCTAGCGATAT+TGG 0.272264 3_4:-24200062 None:intergenic
CAAGGTCAAAACTTACAAAA+TGG 0.282281 3_4:+24199127 Msa0495220:CDS
GGAATATCTTGGAATATAAA+AGG 0.287775 3_4:-24200462 None:intergenic
CAGAGAATTGAAGAAGTTGT+TGG 0.303542 3_4:+24200134 Msa0495220:CDS
TTCTCAGCTGCAACATTTAG+TGG 0.306966 3_4:-24199561 None:intergenic
GTCCTTCTCCCGAGATTTCC+GGG 0.324137 3_4:-24199679 None:intergenic
TGGTGGAGCGCAGGGAGTTC+AGG 0.326248 3_4:+24200091 Msa0495220:CDS
GACGGCCACTGCCGAGGCTT+TGG 0.334682 3_4:+24199950 Msa0495220:CDS
TGATTGTTGGTTGTTTCGTT+AGG 0.335264 3_4:+24199175 Msa0495220:CDS
GAGGCTTTGGAAGCTGCTGC+TGG 0.336521 3_4:+24199963 Msa0495220:CDS
TTGGAAGCTGCTGCTGGTGC+TGG 0.337203 3_4:+24199969 Msa0495220:CDS
TTATACATGCAGACAAATTA+TGG 0.341615 3_4:+24198426 Msa0495220:intron
CTAGTCCATCTCCTTGAAAA+AGG 0.345767 3_4:-24199819 None:intergenic
AGCATTAAAGTTTAGATTTG+TGG 0.347326 3_4:+24200374 Msa0495220:three_prime_UTR
TCTAATTTATACAGTCGATT+AGG 0.352085 3_4:-24199270 None:intergenic
TGATTTAGAAAATGACCTTT+TGG 0.354336 3_4:+24198450 Msa0495220:CDS
GTGTCTTTGTAATGTTTATT+GGG 0.354395 3_4:+24200622 Msa0495220:three_prime_UTR
ATCCAATTTGTAACCCTTCA+AGG 0.375356 3_4:-24200701 None:intergenic
GTCACGCTTGGATGCTATCT+TGG 0.378668 3_4:-24198725 None:intergenic
TTCAGCTCGCGATGTGCTTC+CGG 0.380178 3_4:-24198889 None:intergenic
TACATTTCCCTTGTCACGCT+TGG 0.383575 3_4:-24198737 None:intergenic
GACTCTGTTCCTTCATCCAC+TGG 0.384610 3_4:-24200014 None:intergenic
CCAGACAAAACTGCAAGAAT+TGG 0.386133 3_4:+24199650 Msa0495220:CDS
CTGAGATGAACAGAAAGAAC+AGG 0.394551 3_4:+24199721 Msa0495220:CDS
TCTGGTGGTGCAGTGGGTAA+TGG 0.394964 3_4:+24199900 Msa0495220:CDS
AAATAAATCCCGGAATATCT+TGG 0.397480 3_4:-24200473 None:intergenic
ACCTACTTTCACTTTCACTA+TGG 0.405201 3_4:-24198981 None:intergenic
GGAGCGCAGGGAGTTCAGGC+AGG 0.411409 3_4:+24200095 Msa0495220:CDS
GCAGCTGGAAATAATACTTC+TGG 0.411995 3_4:+24199882 Msa0495220:CDS
ACAAGTACTTGAATGTTGTC+TGG 0.416298 3_4:+24199307 Msa0495220:CDS
TTTATATTCCAAGATATTCC+GGG 0.417016 3_4:+24200465 Msa0495220:three_prime_UTR
TGTTTCGTTAGGGTTGGTAT+TGG 0.420135 3_4:+24199186 Msa0495220:CDS
CTCTGCTGCGAGGTGGCAAA+TGG 0.421789 3_4:+24199341 Msa0495220:CDS
GGACCGGTTGAAAAGGGAAT+TGG 0.431061 3_4:+24199584 Msa0495220:CDS
GGGTCTAAAATTTCAGGATC+AGG 0.435083 3_4:+24198916 Msa0495220:CDS
CCAGCTGCAGCCTCTTCAGC+CGG 0.436278 3_4:-24199867 None:intergenic
CTGAGAAGGACCGGTTGAAA+AGG 0.436446 3_4:+24199577 Msa0495220:CDS
GTCTGATAGGGCTGCTAAGA+AGG 0.438794 3_4:+24198684 Msa0495220:CDS
GGAGTTTAAACAGTGGGTTA+AGG 0.439170 3_4:+24199395 Msa0495220:CDS
CTAGCAATGTGGCAAAAGTT+TGG 0.440126 3_4:+24200071 Msa0495220:CDS
GTTGGTTGTTTCGTTAGGGT+TGG 0.442169 3_4:+24199180 Msa0495220:CDS
TCGTTAGGGTTGGTATTGGC+AGG 0.445479 3_4:+24199190 Msa0495220:CDS
GCATTGAAAGCAGGGGAGGC+AGG 0.447530 3_4:+24199789 Msa0495220:CDS
AATCTAAACTTTAATGCTAA+GGG 0.447688 3_4:-24200369 None:intergenic
AAATTAGGTTTCCCTATTTG+CGG 0.450487 3_4:-24198946 None:intergenic
GTTAATAAAGCATTGAAAGC+AGG 0.455533 3_4:+24199780 Msa0495220:CDS
TGGAGGAATCCCGGAAATCT+CGG 0.458345 3_4:+24199670 Msa0495220:CDS
CAAAGACTGGGCCTATCTAC+AGG 0.458836 3_4:+24199214 Msa0495220:CDS
CCGGCTGAAGAGGCTGCAGC+TGG 0.464826 3_4:+24199867 Msa0495220:CDS
TTCTGACAGGTCAGCTGCTA+AGG 0.465616 3_4:+24198819 Msa0495220:CDS
CAAATTGGATCAACCAGCCT+TGG 0.467807 3_4:+24200714 Msa0495220:three_prime_UTR
CTCAGAAAGCCTCAGAGCCT+TGG 0.470974 3_4:-24199703 None:intergenic
GAACTACTATAATTCAAAAC+CGG 0.473536 3_4:+24199848 Msa0495220:CDS
ATTTGAAAAGCCATCGTTTG+AGG 0.474055 3_4:+24199083 Msa0495220:CDS
AATGGAGGCAGCAATGGGAT+TGG 0.475906 3_4:+24199918 Msa0495220:CDS
AAATCTAAACTTTAATGCTA+AGG 0.477655 3_4:-24200370 None:intergenic
GCAAAAGTTTGGTGGAGCGC+AGG 0.478459 3_4:+24200082 Msa0495220:CDS
GATTGTTGGTTGTTTCGTTA+GGG 0.478505 3_4:+24199176 Msa0495220:CDS
GCCTATCTACAGGCTCTGTA+TGG 0.481256 3_4:+24199224 Msa0495220:CDS
AGCAGCAGCTTCCAAAGCCT+CGG 0.484282 3_4:-24199961 None:intergenic
GGTATTGGCAGGTCAAAGAC+TGG 0.484693 3_4:+24199201 Msa0495220:CDS
CAAGGAGATGGACTAGATCA+AGG 0.488397 3_4:+24199826 Msa0495220:CDS
ATCAGAGTCATCATCGTCTC+CGG 0.491148 3_4:-24198533 None:intergenic
GTTCTGACCGTGAGGTGGAC+AGG 0.495463 3_4:+24198566 Msa0495220:CDS
CAAGTACTTGAATGTTGTCT+GGG 0.495702 3_4:+24199308 Msa0495220:CDS
CGAGAAGACGGAAGAGGAGG+CGG 0.500413 3_4:-24198775 None:intergenic
AACATTCAAGTACTTGTATG+TGG 0.501552 3_4:-24199301 None:intergenic
GTTTAAACTCCTCCTCAAGC+GGG 0.503277 3_4:-24199383 None:intergenic
ACCATACAGAGCCTGTAGAT+AGG 0.505421 3_4:-24199225 None:intergenic
TGCAAGAATTGGAGGAATCC+CGG 0.506961 3_4:+24199661 Msa0495220:CDS
TTGTAATAGAGTTGACCAAA+AGG 0.509430 3_4:-24200264 None:intergenic
GTGGGTAATGGAGGCAGCAA+TGG 0.510166 3_4:+24199912 Msa0495220:CDS
AGCTTCCAAAGCCTCGGCAG+TGG 0.512251 3_4:-24199955 None:intergenic
TCACTGCGAAAGTTAGATTG+AGG 0.514217 3_4:+24200529 Msa0495220:three_prime_UTR
TGCTGCTGGTGCTGGAAAGT+TGG 0.516833 3_4:+24199977 Msa0495220:CDS
CTTCAACATCCTCGTCACTA+CGG 0.517935 3_4:-24199005 None:intergenic
GAAGCTTTGTCTGAAAATGA+AGG 0.519185 3_4:+24199024 Msa0495220:CDS
TGGGTAATGGAGGCAGCAAT+GGG 0.520131 3_4:+24199913 Msa0495220:CDS
CGATGATCTTTACAAGGATG+AGG 0.522524 3_4:+24198609 Msa0495220:CDS
GACAAAACTGCAAGAATTGG+AGG 0.524371 3_4:+24199653 Msa0495220:CDS
TTCAACATCCTCGTCACTAC+GGG 0.525338 3_4:-24199004 None:intergenic
TGAGAAGGACCGGTTGAAAA+GGG 0.526022 3_4:+24199578 Msa0495220:CDS
GGAGGAATCCCGGAAATCTC+GGG 0.526557 3_4:+24199671 Msa0495220:CDS
TTAATAAAGCATTGAAAGCA+GGG 0.529926 3_4:+24199781 Msa0495220:CDS
GGCAGCAATGGGATTGGAGC+TGG 0.532641 3_4:+24199924 Msa0495220:CDS
TTTGAACTTACAACCTTGAA+GGG 0.533981 3_4:+24200688 Msa0495220:three_prime_UTR
AAGCTTTGTCTGAAAATGAA+GGG 0.535182 3_4:+24199025 Msa0495220:CDS
TAATTCAAAACCGGCTGAAG+AGG 0.535280 3_4:+24199857 Msa0495220:CDS
AATACTTCTGGTGGTGCAGT+GGG 0.540097 3_4:+24199894 Msa0495220:CDS
TGTCTGGATCTTCTCTACTC+CGG 0.540198 3_4:-24199634 None:intergenic
ATGTTGCAGCTGAGAAGGAC+CGG 0.542009 3_4:+24199568 Msa0495220:CDS
ACTAAATGTTGCAGCTGAGA+AGG 0.543890 3_4:+24199563 Msa0495220:CDS
TGAGGAGGAGTTTAAACAGT+GGG 0.546108 3_4:+24199389 Msa0495220:CDS
TGAATGAACTGCGTGCTAAG+AGG 0.547152 3_4:+24198851 Msa0495220:CDS
AGCACATCGCGAGCTGAAAG+AGG 0.547212 3_4:+24198894 Msa0495220:CDS
GAGCGCAGGGAGTTCAGGCA+GGG 0.549229 3_4:+24200096 Msa0495220:CDS
ATCCCGGAAATCTCGGGAGA+AGG 0.549427 3_4:+24199677 Msa0495220:CDS
GAGGCTGAAACAGCGAGAGC+CGG 0.553800 3_4:+24198870 Msa0495220:CDS
TTATACCAGCAGCCTCCAAA+AGG 0.555238 3_4:-24198465 None:intergenic
TGGTATGACGGCCACTGCCG+AGG 0.559819 3_4:+24199944 Msa0495220:CDS
ACGTCTAATTTCCATAAACC+TGG 0.561028 3_4:-24200598 None:intergenic
AAGTAGAGCGAAGTGGTGGC+CGG 0.562543 3_4:+24199418 Msa0495220:CDS
GGTGATTACAAGAGAAGAAG+AGG 0.564356 3_4:+24200209 Msa0495220:CDS
CATCTAGCCTCTTCAGCATC+CGG 0.564400 3_4:-24199437 None:intergenic
GAAAGCAAGAACGATGCAGC+CGG 0.567987 3_4:+24199615 Msa0495220:CDS
CATTTGCCACCTCGCAGCAG+AGG 0.570644 3_4:-24199340 None:intergenic
TAAAAGACTTAAACGAAGGA+AGG 0.571145 3_4:-24200760 None:intergenic
ACAAGAGCTCCAGTGGATGA+AGG 0.572277 3_4:+24200005 Msa0495220:CDS
GTGGTGGCCGGATGCTGAAG+AGG 0.573366 3_4:+24199430 Msa0495220:CDS
TAATACTTCTGGTGGTGCAG+TGG 0.573498 3_4:+24199893 Msa0495220:CDS
GACAGGTCAGCTGCTAAGGA+TGG 0.574292 3_4:+24198823 Msa0495220:CDS
GGTGGTGCAGTGGGTAATGG+AGG 0.575591 3_4:+24199903 Msa0495220:CDS
CAAAAGTTTGGTGGAGCGCA+GGG 0.575970 3_4:+24200083 Msa0495220:CDS
GATGATGACAAGATAATGCC+TGG 0.576356 3_4:+24199060 Msa0495220:CDS
GATAGCATCCAAGCGTGACA+AGG 0.578775 3_4:+24198729 Msa0495220:CDS
ATCTAAACTTTAATGCTAAG+GGG 0.579152 3_4:-24200368 None:intergenic
GCAATGTGGCAAAAGTTTGG+TGG 0.581264 3_4:+24200074 Msa0495220:CDS
ATCACACGAGAAGACGGAAG+AGG 0.585226 3_4:-24198781 None:intergenic
GCCATAGTGAAAGTGAAAGT+AGG 0.587909 3_4:+24198980 Msa0495220:CDS
GCACATCGCGAGCTGAAAGA+GGG 0.588648 3_4:+24198895 Msa0495220:CDS
TGTTTAAACTCCTCCTCAAG+CGG 0.589955 3_4:-24199384 None:intergenic
ATCTCGGGAGAAGGACGCCA+AGG 0.590489 3_4:+24199686 Msa0495220:CDS
GGTCTAAAATTTCAGGATCA+GGG 0.591143 3_4:+24198917 Msa0495220:CDS
TAAAAGAAATCACCATTCCA+AGG 0.599048 3_4:+24199109 Msa0495220:CDS
TGCGAGGTGGCAAATGGCCA+TGG 0.599400 3_4:+24199347 Msa0495220:CDS
AGGAGTGATGAATCTGATGT+TGG 0.600216 3_4:+24198586 Msa0495220:CDS
CATCTACTAGATCTTCTGAC+AGG 0.600420 3_4:+24198806 Msa0495220:CDS
ACAATAAAAGACTTAAACGA+AGG 0.601237 3_4:-24200764 None:intergenic
TGTTGGCGATGATCTTTACA+AGG 0.605036 3_4:+24198603 Msa0495220:CDS
TGGGATTGGAGCTGGTATGA+CGG 0.607971 3_4:+24199932 Msa0495220:CDS
GATGACATCACACGAGAAGA+CGG 0.608285 3_4:-24198787 None:intergenic
TTTAAACTCCTCCTCAAGCG+GGG 0.608619 3_4:-24199382 None:intergenic
TGTAATGTTTATTGGGTACG+TGG 0.608871 3_4:+24200629 Msa0495220:three_prime_UTR
GTCTAAAATTTCAGGATCAG+GGG 0.613225 3_4:+24198918 Msa0495220:CDS
GAGTCCCAGAAAACGATGGA+AGG 0.614728 3_4:+24200162 Msa0495220:CDS
ACACGAGAAGACGGAAGAGG+AGG 0.615894 3_4:-24198778 None:intergenic
GGTAGACACAAGAGCTCCAG+TGG 0.616107 3_4:+24199998 Msa0495220:CDS
AGAAGGACGCCAAGGCTCTG+AGG 0.617944 3_4:+24199694 Msa0495220:CDS
ATAGCATCCAAGCGTGACAA+GGG 0.619336 3_4:+24198730 Msa0495220:CDS
GCTGAAGAGGCTAGATGTGG+TGG 0.622446 3_4:+24199443 Msa0495220:CDS
TCTAAAATTTCAGGATCAGG+GGG 0.625310 3_4:+24198919 Msa0495220:CDS
TAAAGCATTGAAAGCAGGGG+AGG 0.625312 3_4:+24199785 Msa0495220:CDS
TCTGAATTCTGAAAATTACC+AGG 0.627792 3_4:-24200574 None:intergenic
CATCACTCCTGTCCACCTCA+CGG 0.632979 3_4:-24198573 None:intergenic
GTATTGGCAGGTCAAAGACT+GGG 0.637870 3_4:+24199202 Msa0495220:CDS
CATCAGCTGACATTAACAGT+TGG 0.642633 3_4:+24200188 Msa0495220:CDS
GATGATGACTCTGATGATGA+TGG 0.644756 3_4:+24198541 Msa0495220:CDS
CACATCGCGAGCTGAAAGAG+GGG 0.647083 3_4:+24198896 Msa0495220:CDS
ATGAGACCTCTGCTGCGAGG+TGG 0.647938 3_4:+24199334 Msa0495220:CDS
ACTACACAAATATATTATCG+TGG 0.654615 3_4:+24200414 Msa0495220:three_prime_UTR
AAGTAGGTCCCGTAGTGACG+AGG 0.658216 3_4:+24198996 Msa0495220:CDS
TAATAAAGCATTGAAAGCAG+GGG 0.659215 3_4:+24199782 Msa0495220:CDS
ATACAGTCGATTAGGATCCG+AGG 0.660349 3_4:-24199262 None:intergenic
GTGATTACAAGAGAAGAAGA+GGG 0.663120 3_4:+24200210 Msa0495220:CDS
AAGGAAGTAGAGCGAAGTGG+TGG 0.663190 3_4:+24199414 Msa0495220:CDS
TTAAACTCCTCCTCAAGCGG+GGG 0.674132 3_4:-24199381 None:intergenic
GTTAAGGAAGTAGAGCGAAG+TGG 0.674298 3_4:+24199411 Msa0495220:CDS
TTCTAACATCTGCTTCACAG+TGG 0.675939 3_4:-24199514 None:intergenic
TGGTGGTTCTGACCGTGAGG+TGG 0.679830 3_4:+24198561 Msa0495220:CDS
TTTCGAGTCCCAGAAAACGA+TGG 0.687907 3_4:+24200158 Msa0495220:CDS
AAGTACTTGAATGTTGTCTG+GGG 0.689030 3_4:+24199309 Msa0495220:CDS
TTGAGGAGGAGTTTAAACAG+TGG 0.689149 3_4:+24199388 Msa0495220:CDS
TGCCAATATCGCTAGCAATG+TGG 0.691084 3_4:+24200060 Msa0495220:CDS
GCTGGAAATAATACTTCTGG+TGG 0.697224 3_4:+24199885 Msa0495220:CDS
GATGACTCTGATGATGATGG+TGG 0.712456 3_4:+24198544 Msa0495220:CDS
GATGCTGAAGAGGCTAGATG+TGG 0.716515 3_4:+24199440 Msa0495220:CDS
GAAATGAGACCTCTGCTGCG+AGG 0.717415 3_4:+24199331 Msa0495220:CDS
TGATGGTGGTTCTGACCGTG+AGG 0.756865 3_4:+24198558 Msa0495220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG + chr3_4:24196853-24196872 Msa0495220:intron 0.0%
!! TTGTTAAACAATAAAAAAAA+AGG - chr3_4:24193825-24193844 None:intergenic 10.0%
!!! TTTTTTTTTATTGTTTAACA+AGG + chr3_4:24193824-24193843 Msa0495220:intron 10.0%
!!! AAAATGGATTTTTTATATTT+TGG + chr3_4:24194954-24194973 Msa0495220:intron 10.0%
!! ATATATATATATATATGGTT+AGG + chr3_4:24196864-24196883 Msa0495220:intron 10.0%
!! ATTTAATATTGTTCAAAAAG+AGG - chr3_4:24193079-24193098 None:intergenic 15.0%
!! ATAATTAAAGTATATAAGAC+TGG + chr3_4:24193264-24193283 Msa0495220:intron 15.0%
!! TAATTAAAGTATATAAGACT+GGG + chr3_4:24193265-24193284 Msa0495220:intron 15.0%
!!! TATTTTCCAAAATAATGAAA+AGG + chr3_4:24194133-24194152 Msa0495220:intron 15.0%
!! TTAACATGTTATTAATTTCT+TGG + chr3_4:24194286-24194305 Msa0495220:intron 15.0%
!!! AATTATAATTGCAAACATTT+TGG + chr3_4:24194401-24194420 Msa0495220:intron 15.0%
!!! ATATTTTGATTAGGTTTTAA+AGG + chr3_4:24195675-24195694 Msa0495220:intron 15.0%
!!! ATTTTTGAAATTGAAATGAA+GGG - chr3_4:24197078-24197097 None:intergenic 15.0%
!!! TATTTTTGAAATTGAAATGA+AGG - chr3_4:24197079-24197098 None:intergenic 15.0%
!!! AATTTGAAATTGAAATTGAA+TGG - chr3_4:24197154-24197173 None:intergenic 15.0%
!!! TTTTAAAAACTAATGCTTAA+TGG + chr3_4:24197185-24197204 Msa0495220:intron 15.0%
!!! TTTTTTGAAATTGAAATGAA+GGG + chr3_4:24197607-24197626 Msa0495220:intron 15.0%
!!! TCTTATTTATAAGAGAAAAT+TGG + chr3_4:24197846-24197865 Msa0495220:intron 15.0%
!! CTTATTTATAAGAGAAAATT+GGG + chr3_4:24197847-24197866 Msa0495220:intron 15.0%
!! TCAATAAAAATTAATGTATC+TGG - chr3_4:24197909-24197928 None:intergenic 15.0%
!!! AAAAATTGATTTTTTGATGA+AGG - chr3_4:24198508-24198527 None:intergenic 15.0%
!!! AAAAATCAATTTTTTGATTC+CGG + chr3_4:24198514-24198533 Msa0495220:CDS 15.0%
!! AAAGAAAAATAAATAAATCC+CGG - chr3_4:24200486-24200505 None:intergenic 15.0%
!! AATTAAAGTATATAAGACTG+GGG + chr3_4:24193266-24193285 Msa0495220:intron 20.0%
!! TTTGATATTTCAAATTGACA+AGG + chr3_4:24194830-24194849 Msa0495220:intron 20.0%
!! TTGAATGATTAATGTGAAAA+TGG + chr3_4:24194938-24194957 Msa0495220:intron 20.0%
!! TACAATAGTGAGAAATTATA+AGG - chr3_4:24195170-24195189 None:intergenic 20.0%
!! ATGGTGAAATAGATAATTAA+GGG + chr3_4:24195481-24195500 Msa0495220:intron 20.0%
!!! AAACAGGTAATAAATGTTTT+TGG - chr3_4:24195565-24195584 None:intergenic 20.0%
!!! TTAAATAGTCTTAAACAAAC+AGG - chr3_4:24195581-24195600 None:intergenic 20.0%
!!! TATTGTTTGATCAATTTGTT+TGG - chr3_4:24196035-24196054 None:intergenic 20.0%
!! CAAATTGATCAAACAATATT+TGG + chr3_4:24196037-24196056 Msa0495220:intron 20.0%
!!! TTTTTTTCTTCCAAATAGTA+TGG - chr3_4:24196118-24196137 None:intergenic 20.0%
!!! ATAGTAAAAAATGCCTTTTA+AGG - chr3_4:24196195-24196214 None:intergenic 20.0%
!!! TTAAAAGGCATTTTTTACTA+TGG + chr3_4:24196194-24196213 Msa0495220:intron 20.0%
!! TTTGGATTAAACAAATTGAA+TGG - chr3_4:24197748-24197767 None:intergenic 20.0%
!!! ATTCAATTTGTTTAATCCAA+AGG + chr3_4:24196936-24196955 Msa0495220:intron 20.0%
!!! TGAATAACGAAAGTTTTTTT+CGG + chr3_4:24197439-24197458 Msa0495220:intron 20.0%
!!! GTTTTTTGAAATTGAAATGA+AGG + chr3_4:24197606-24197625 Msa0495220:intron 20.0%
!! AGTGCAAAATAAACTATTAA+AGG + chr3_4:24197658-24197677 Msa0495220:intron 20.0%
!!! ATTCAATTTGTTTAATCCAA+AGG - chr3_4:24196936-24196955 None:intergenic 20.0%
!! TTTGGATTAAACAAATTGAA+TGG + chr3_4:24197748-24197767 Msa0495220:intron 20.0%
!!! TCATATTTAATTTGACACTT+TGG + chr3_4:24197784-24197803 Msa0495220:intron 20.0%
!!! TTTTCTCTTATAAATAAGAC+CGG - chr3_4:24197845-24197864 None:intergenic 20.0%
!! AAAACTTACAAAATGGTTTA+TGG + chr3_4:24199134-24199153 Msa0495220:CDS 20.0%
!! AATCTAAACTTTAATGCTAA+GGG - chr3_4:24200372-24200391 None:intergenic 20.0%
!! AAATCTAAACTTTAATGCTA+AGG - chr3_4:24200373-24200392 None:intergenic 20.0%
!!! TTTTATATTCCAAGATATTC+CGG + chr3_4:24200464-24200483 Msa0495220:three_prime_UTR 20.0%
! AAGAATCCTCATTTGAAAAA+TGG - chr3_4:24192974-24192993 None:intergenic 25.0%
! CATGAAAATAAAAGGCTAAT+TGG - chr3_4:24192999-24193018 None:intergenic 25.0%
!!! CAATTAGCCTTTTATTTTCA+TGG + chr3_4:24192997-24193016 Msa0495220:intron 25.0%
! ATGATAGTTGTACAGTTATA+AGG + chr3_4:24193025-24193044 Msa0495220:intron 25.0%
!!! GTGTTTGTTATTAGCTTAAT+TGG + chr3_4:24193188-24193207 Msa0495220:intron 25.0%
! TACAATAGATACCAATATAC+CGG - chr3_4:24193585-24193604 None:intergenic 25.0%
!!! TTCATATCATGCTACTTTTT+TGG + chr3_4:24193941-24193960 Msa0495220:intron 25.0%
!!! ATGACTCATTTTTACTTATC+TGG + chr3_4:24194074-24194093 Msa0495220:intron 25.0%
!!! ATCTGGTTTTAAGATTAAGA+AGG + chr3_4:24194091-24194110 Msa0495220:intron 25.0%
! TACATTCAGTGTTCAATTAA+GGG + chr3_4:24194347-24194366 Msa0495220:intron 25.0%
! AAACTGAATGAATCATAAGA+AGG + chr3_4:24194622-24194641 Msa0495220:intron 25.0%
! AACTGAATGAATCATAAGAA+GGG + chr3_4:24194623-24194642 Msa0495220:intron 25.0%
! ACTCACAATTTAGAGAAAAA+TGG + chr3_4:24194662-24194681 Msa0495220:intron 25.0%
! CAAGATTGTAAAAGTAAATC+TGG - chr3_4:24194753-24194772 None:intergenic 25.0%
! AAATGATCTTGTATAAGATC+TGG + chr3_4:24194793-24194812 Msa0495220:intron 25.0%
!!! TTGGTTTTTGTTAATGTTTG+TGG + chr3_4:24194882-24194901 Msa0495220:intron 25.0%
!! TGGTTTTTGTTAATGTTTGT+GGG + chr3_4:24194883-24194902 Msa0495220:intron 25.0%
! AACTCATAACATTGGTAAAA+TGG + chr3_4:24195080-24195099 Msa0495220:intron 25.0%
! AAAACTCATATCATATGGAA+AGG - chr3_4:24195146-24195165 None:intergenic 25.0%
! AAGGTAAAACTCATATCATA+TGG - chr3_4:24195151-24195170 None:intergenic 25.0%
! ATTCCAACTATTACGTTATA+AGG - chr3_4:24195230-24195249 None:intergenic 25.0%
! GATGAAAAATGGTAATAGTT+AGG + chr3_4:24195354-24195373 Msa0495220:intron 25.0%
!!! CTTGTATGTTTTGAATAGAT+AGG + chr3_4:24195382-24195401 Msa0495220:intron 25.0%
! CATGGTGAAATAGATAATTA+AGG + chr3_4:24195480-24195499 Msa0495220:intron 25.0%
!!! AGGGATTTTTTAATTGCAAA+TGG + chr3_4:24195500-24195519 Msa0495220:intron 25.0%
! AATTGCAAATGGATAATTGA+TGG + chr3_4:24195511-24195530 Msa0495220:intron 25.0%
!!! ATAATTGATGGATTTGCATT+TGG + chr3_4:24195523-24195542 Msa0495220:intron 25.0%
!!! AGGTAATAAATGTTTTTGGA+AGG - chr3_4:24195561-24195580 None:intergenic 25.0%
! AAGAAATACAAGATATGTCA+AGG + chr3_4:24195714-24195733 Msa0495220:intron 25.0%
! GATTATGAAATCCGAAAAAA+TGG + chr3_4:24195841-24195860 Msa0495220:intron 25.0%
! AGGAAAATGTCTTAAAAGAT+CGG + chr3_4:24195947-24195966 Msa0495220:intron 25.0%
!! GCAACATAGATTTTTCTAAT+CGG + chr3_4:24196388-24196407 Msa0495220:intron 25.0%
! AATGAATACTAATCGCATAA+TGG + chr3_4:24196669-24196688 Msa0495220:intron 25.0%
!!! TCATATTTAATTTGACACCT+TGG - chr3_4:24196901-24196920 None:intergenic 25.0%
! AGTGCAAAATCAACTATTAA+AGG - chr3_4:24197027-24197046 None:intergenic 25.0%
!! TAGTGTTTTATAGAATACAC+AGG - chr3_4:24197242-24197261 None:intergenic 25.0%
!!! TAATGATTGTTTTAAGCCTT+TGG + chr3_4:24197730-24197749 Msa0495220:intron 25.0%
! CAAATTGAATGGATAAGATT+TGG + chr3_4:24197759-24197778 Msa0495220:intron 25.0%
! GTAGTAATATATTATGGGTT+AGG - chr3_4:24197821-24197840 None:intergenic 25.0%
! CCTATTTATAAGAGAAAGTT+AGG - chr3_4:24197932-24197951 None:intergenic 25.0%
! CCTAACTTTCTCTTATAAAT+AGG + chr3_4:24197929-24197948 Msa0495220:intron 25.0%
! GAAAATTCAGAAATTTGAAC+AGG - chr3_4:24198189-24198208 None:intergenic 25.0%
!!! TGATTTTTGTTGTCCAATAA+CGG + chr3_4:24198223-24198242 Msa0495220:intron 25.0%
! GATAGTAAGGTTTCAAAAAA+CGG - chr3_4:24198300-24198319 None:intergenic 25.0%
! CAACAAAGCAATAAACAAAA+GGG - chr3_4:24198345-24198364 None:intergenic 25.0%
! ACAACAAAGCAATAAACAAA+AGG - chr3_4:24198346-24198365 None:intergenic 25.0%
! TTATACATGCAGACAAATTA+TGG + chr3_4:24198426-24198445 Msa0495220:intron 25.0%
!! TGATTTAGAAAATGACCTTT+TGG + chr3_4:24198450-24198469 Msa0495220:CDS 25.0%
!!! ATTGATTTTTTGATGAAGGT+GGG - chr3_4:24198504-24198523 None:intergenic 25.0%
!!! AATTGATTTTTTGATGAAGG+TGG - chr3_4:24198505-24198524 None:intergenic 25.0%
! TCTAATTTATACAGTCGATT+AGG - chr3_4:24199273-24199292 None:intergenic 25.0%
!!! TTAATAAAGCATTGAAAGCA+GGG + chr3_4:24199781-24199800 Msa0495220:CDS 25.0%
! GAACTACTATAATTCAAAAC+CGG + chr3_4:24199848-24199867 Msa0495220:CDS 25.0%
!! TAAAGTGACAATTTTCCTTT+TGG + chr3_4:24200249-24200268 Msa0495220:three_prime_UTR 25.0%
! ATCTAAACTTTAATGCTAAG+GGG - chr3_4:24200371-24200390 None:intergenic 25.0%
! AGCATTAAAGTTTAGATTTG+TGG + chr3_4:24200374-24200393 Msa0495220:three_prime_UTR 25.0%
! ACTACACAAATATATTATCG+TGG + chr3_4:24200414-24200433 Msa0495220:three_prime_UTR 25.0%
!! GGAATATAAAAGGAATTTTG+TGG - chr3_4:24200455-24200474 None:intergenic 25.0%
! GGAATATCTTGGAATATAAA+AGG - chr3_4:24200465-24200484 None:intergenic 25.0%
! TTTATATTCCAAGATATTCC+GGG + chr3_4:24200465-24200484 Msa0495220:three_prime_UTR 25.0%
!!! TTGAGGCTTTTAAGTTTTAA+AGG + chr3_4:24200546-24200565 Msa0495220:three_prime_UTR 25.0%
! AGTGTCTTTGTAATGTTTAT+TGG + chr3_4:24200621-24200640 Msa0495220:three_prime_UTR 25.0%
! GTGTCTTTGTAATGTTTATT+GGG + chr3_4:24200622-24200641 Msa0495220:three_prime_UTR 25.0%
! AGAAAGAAAAAGATAAACCA+AGG - chr3_4:24200734-24200753 None:intergenic 25.0%
! ACAATAAAAGACTTAAACGA+AGG - chr3_4:24200767-24200786 None:intergenic 25.0%
!! ATGGTTCCATTTTTCAAATG+AGG + chr3_4:24192965-24192984 Msa0495220:intron 30.0%
!!! TTAGCCTTTTATTTTCATGG+TGG + chr3_4:24193000-24193019 Msa0495220:intron 30.0%
ATCACCACCATGAAAATAAA+AGG - chr3_4:24193007-24193026 None:intergenic 30.0%
! TAAGGTTTTTCATGATACCT+AGG + chr3_4:24193043-24193062 Msa0495220:intron 30.0%
AATTTCTTTACACACTTCTC+TGG + chr3_4:24193214-24193233 Msa0495220:intron 30.0%
AGTTTGGTTGGGTTTAATTA+TGG + chr3_4:24193747-24193766 Msa0495220:intron 30.0%
!!! ATGCTACTTTTTTGGCTAAT+AGG + chr3_4:24193949-24193968 Msa0495220:intron 30.0%
! GTGGTGATTTTAAATTTGCA+AGG - chr3_4:24193995-24194014 None:intergenic 30.0%
TCCAAAATAATGAAAAGGTG+AGG + chr3_4:24194138-24194157 Msa0495220:intron 30.0%
! ACCTCACCTTTTCATTATTT+TGG - chr3_4:24194142-24194161 None:intergenic 30.0%
TGTTTATCATTATGAGTGCT+TGG + chr3_4:24194181-24194200 Msa0495220:intron 30.0%
! AAATTGATGACTAACATGCA+TGG - chr3_4:24194256-24194275 None:intergenic 30.0%
TGATTAATTAAGCACTAGCA+AGG - chr3_4:24194322-24194341 None:intergenic 30.0%
GTACATTCAGTGTTCAATTA+AGG + chr3_4:24194346-24194365 Msa0495220:intron 30.0%
ATGCAAGGCATAAATCATAT+TGG - chr3_4:24194538-24194557 None:intergenic 30.0%
!!! TAAATCTGGTTTTTTGTGCA+AGG - chr3_4:24194739-24194758 None:intergenic 30.0%
!!! GGTTTTTATGTTTTAGCTCT+TGG + chr3_4:24194863-24194882 Msa0495220:intron 30.0%
!!! TATTTTGGTGTTTCATTTGC+AGG + chr3_4:24194969-24194988 Msa0495220:intron 30.0%
CATTGTACAACTCATAACAT+TGG + chr3_4:24195072-24195091 Msa0495220:intron 30.0%
! ATGATTGATAGTTTCTGAGA+TGG + chr3_4:24195110-24195129 Msa0495220:intron 30.0%
!!! ACGTTATAAGGAGTATTTTG+AGG - chr3_4:24195218-24195237 None:intergenic 30.0%
ACTCCTTATAACGTAATAGT+TGG + chr3_4:24195224-24195243 Msa0495220:intron 30.0%
TATCCAAAATCAGAATTGCT+CGG + chr3_4:24195296-24195315 Msa0495220:intron 30.0%
TTGTTTGTCTTGATAGAATG+TGG + chr3_4:24195436-24195455 Msa0495220:intron 30.0%
AGGTTCATACAAGCTTATTA+CGG - chr3_4:24195751-24195770 None:intergenic 30.0%
ACCTTTGAATAGAGATCTTA+TGG + chr3_4:24195767-24195786 Msa0495220:intron 30.0%
ACCATAAGATCTCTATTCAA+AGG - chr3_4:24195771-24195790 None:intergenic 30.0%
!! TAATCTGAAATAGGTGTTGA+TGG - chr3_4:24195826-24195845 None:intergenic 30.0%
! CGGATTTCATAATCTGAAAT+AGG - chr3_4:24195835-24195854 None:intergenic 30.0%
TATGAAATCCGAAAAAATGG+AGG + chr3_4:24195844-24195863 Msa0495220:intron 30.0%
ATGAAATCCGAAAAAATGGA+GGG + chr3_4:24195845-24195864 Msa0495220:intron 30.0%
TTTAGTGTTACGGATAGTTT+AGG + chr3_4:24195927-24195946 Msa0495220:intron 30.0%
!! AACAATATTTGGTGCTATTG+TGG + chr3_4:24196048-24196067 Msa0495220:intron 30.0%
GAATTGAGTTCCATACTATT+TGG + chr3_4:24196105-24196124 Msa0495220:intron 30.0%
ACAGAGAAGAAAACCTTAAA+AGG + chr3_4:24196179-24196198 Msa0495220:intron 30.0%
TCATATAACTCAAACTCGAA+TGG + chr3_4:24196566-24196585 Msa0495220:intron 30.0%
AATGCTTTCACTTCATTTGA+AGG - chr3_4:24196630-24196649 None:intergenic 30.0%
!! GAAAGCATTGATTGAGAATT+TGG + chr3_4:24196641-24196660 Msa0495220:intron 30.0%
CAAATTGAATGGATGAGATT+TGG - chr3_4:24196926-24196945 None:intergenic 30.0%
!!! TAGTGATTGTTTTAAGCCTT+TGG - chr3_4:24196955-24196974 None:intergenic 30.0%
AATTGAATGGATGAGATTTG+TGG - chr3_4:24196924-24196943 None:intergenic 30.0%
GTTTGCATTCACATAAAAAG+TGG + chr3_4:24197481-24197500 Msa0495220:intron 30.0%
CAATTCCTGTATAGTTGTAA+AGG - chr3_4:24197520-24197539 None:intergenic 30.0%
CCGGAGTAGTAATATATTAT+GGG - chr3_4:24197826-24197845 None:intergenic 30.0%
CCCATAATATATTACTACTC+CGG + chr3_4:24197823-24197842 Msa0495220:intron 30.0%
ACCGGAGTAGTAATATATTA+TGG - chr3_4:24197827-24197846 None:intergenic 30.0%
!! TCAACAAAAGTTGATGTATC+TGG + chr3_4:24197870-24197889 Msa0495220:intron 30.0%
AAATCGACAAAGAGAAGAAA+CGG + chr3_4:24198045-24198064 Msa0495220:intron 30.0%
GGAATACAAGAAATTTGAAC+AGG - chr3_4:24198159-24198178 None:intergenic 30.0%
!!! CTGAATTTTCAAGTCTGTAA+CGG + chr3_4:24198199-24198218 Msa0495220:intron 30.0%
!!! TGAATTTTCAAGTCTGTAAC+GGG + chr3_4:24198200-24198219 Msa0495220:intron 30.0%
GATACTAAAGTGTGATAGTA+AGG - chr3_4:24198313-24198332 None:intergenic 30.0%
! TTTAGAAAATGACCTTTTGG+AGG + chr3_4:24198453-24198472 Msa0495220:CDS 30.0%
! AGAGATGATTTTGTCTGATA+GGG + chr3_4:24198672-24198691 Msa0495220:CDS 30.0%
AAATTAGGTTTCCCTATTTG+CGG - chr3_4:24198949-24198968 None:intergenic 30.0%
! AAGCTTTGTCTGAAAATGAA+GGG + chr3_4:24199025-24199044 Msa0495220:CDS 30.0%
TAAAAGAAATCACCATTCCA+AGG + chr3_4:24199109-24199128 Msa0495220:CDS 30.0%
!! CATTTTGTAAGTTTTGACCT+TGG - chr3_4:24199129-24199148 None:intergenic 30.0%
CAAGGTCAAAACTTACAAAA+TGG + chr3_4:24199127-24199146 Msa0495220:CDS 30.0%
ACAATCAACTCCTCAAAAAA+GGG - chr3_4:24199162-24199181 None:intergenic 30.0%
AACAATCAACTCCTCAAAAA+AGG - chr3_4:24199163-24199182 None:intergenic 30.0%
!!! TTTTTTGAGGAGTTGATTGT+TGG + chr3_4:24199162-24199181 Msa0495220:CDS 30.0%
AACATTCAAGTACTTGTATG+TGG - chr3_4:24199304-24199323 None:intergenic 30.0%
AAGAGAAAAAATCTATCTCG+CGG + chr3_4:24199535-24199554 Msa0495220:CDS 30.0%
! GCTTTCAATGCTTTATTAAC+TGG - chr3_4:24199780-24199799 None:intergenic 30.0%
!! GTTAATAAAGCATTGAAAGC+AGG + chr3_4:24199780-24199799 Msa0495220:CDS 30.0%
!! TAATAAAGCATTGAAAGCAG+GGG + chr3_4:24199782-24199801 Msa0495220:CDS 30.0%
TTGTAATAGAGTTGACCAAA+AGG - chr3_4:24200267-24200286 None:intergenic 30.0%
! TTTTGGTCAACTCTATTACA+AGG + chr3_4:24200266-24200285 Msa0495220:three_prime_UTR 30.0%
CTCTATTACAAGGAAAAAGT+TGG + chr3_4:24200276-24200295 Msa0495220:three_prime_UTR 30.0%
AAATAAATCCCGGAATATCT+TGG - chr3_4:24200476-24200495 None:intergenic 30.0%
! TCTGAATTCTGAAAATTACC+AGG - chr3_4:24200577-24200596 None:intergenic 30.0%
! AATTTTCAGAATTCAGATCC+AGG + chr3_4:24200580-24200599 Msa0495220:three_prime_UTR 30.0%
! TACGTGGTACACAATATTTT+AGG + chr3_4:24200645-24200664 Msa0495220:three_prime_UTR 30.0%
! TTTTGAACTTACAACCTTGA+AGG + chr3_4:24200687-24200706 Msa0495220:three_prime_UTR 30.0%
TTTGAACTTACAACCTTGAA+GGG + chr3_4:24200688-24200707 Msa0495220:three_prime_UTR 30.0%
TAAAAGACTTAAACGAAGGA+AGG - chr3_4:24200763-24200782 None:intergenic 30.0%
AAAGAGGATAGAAAGAACCT+AGG - chr3_4:24193063-24193082 None:intergenic 35.0%
ATGCTATCACAAACTGTCAT+GGG - chr3_4:24193157-24193176 None:intergenic 35.0%
!!! GCTGATTGTTTTTTACTGCT+AGG + chr3_4:24193335-24193354 Msa0495220:intron 35.0%
!! TTTTTGTGTTTCTGCCATCT+GGG + chr3_4:24193400-24193419 Msa0495220:intron 35.0%
TCATATTGTCCTAAGCAAAC+AGG - chr3_4:24193728-24193747 None:intergenic 35.0%
TGCTTAGGACAATATGAGTT+TGG + chr3_4:24193731-24193750 Msa0495220:intron 35.0%
TAGGACAATATGAGTTTGGT+TGG + chr3_4:24193735-24193754 Msa0495220:intron 35.0%
AGGACAATATGAGTTTGGTT+GGG + chr3_4:24193736-24193755 Msa0495220:intron 35.0%
! TAGAAACTGGCATTTCTAGA+AGG - chr3_4:24193871-24193890 None:intergenic 35.0%
TGCTCACAATAAACAATGTG+TGG - chr3_4:24194014-24194033 None:intergenic 35.0%
CATTGTTTATTGTGAGCATC+AGG + chr3_4:24194016-24194035 Msa0495220:intron 35.0%
TTGCATTTCAATCTCACCAA+TGG - chr3_4:24194050-24194069 None:intergenic 35.0%
ATCATTATGAGTGCTTGGAT+AGG + chr3_4:24194186-24194205 Msa0495220:intron 35.0%
! CAAAACAAACATAGTGGGAA+TGG - chr3_4:24194376-24194395 None:intergenic 35.0%
!!! TTCCCACTATGTTTGTTTTG+AGG + chr3_4:24194376-24194395 Msa0495220:intron 35.0%
!!! TCCCACTATGTTTGTTTTGA+GGG + chr3_4:24194377-24194396 Msa0495220:intron 35.0%
ACCCTCAAAACAAACATAGT+GGG - chr3_4:24194381-24194400 None:intergenic 35.0%
TACCCTCAAAACAAACATAG+TGG - chr3_4:24194382-24194401 None:intergenic 35.0%
! TTGTTGTTGTTACTGCTTAG+TGG + chr3_4:24194480-24194499 Msa0495220:intron 35.0%
GCTGCTTAGTATTTAATGTC+TGG + chr3_4:24194568-24194587 Msa0495220:intron 35.0%
GTATTTAATGTCTGGTGTGT+TGG + chr3_4:24194576-24194595 Msa0495220:intron 35.0%
TGAATGAATCATAAGAAGGG+AGG + chr3_4:24194626-24194645 Msa0495220:intron 35.0%
! AATTGACAAGGAGCGTATTA+TGG + chr3_4:24194842-24194861 Msa0495220:intron 35.0%
ATAACATTGGTAAAATGGCC+TGG + chr3_4:24195085-24195104 Msa0495220:intron 35.0%
AGAAACTATCAATCATGTCC+AGG - chr3_4:24195106-24195125 None:intergenic 35.0%
!!! AAGGAGTATTTTGAGGCTTA+AGG - chr3_4:24195211-24195230 None:intergenic 35.0%
! AGTTGGAATGTCTCTTTTTC+AGG + chr3_4:24195241-24195260 Msa0495220:intron 35.0%
TGTTTGTTTGTTTCGATGGA+AGG + chr3_4:24195271-24195290 Msa0495220:intron 35.0%
GTTTGTTTGTTTCGATGGAA+GGG + chr3_4:24195272-24195291 Msa0495220:intron 35.0%
ATCCAAAATCAGAATTGCTC+GGG + chr3_4:24195297-24195316 Msa0495220:intron 35.0%
TGTCTTGATAGAATGTGGAT+AGG + chr3_4:24195441-24195460 Msa0495220:intron 35.0%
TAACATGCGCTTTAGTGTTA+CGG + chr3_4:24195917-24195936 Msa0495220:intron 35.0%
GAAACTGTTAGGAATGAACT+GGG - chr3_4:24196152-24196171 None:intergenic 35.0%
TGAAACTGTTAGGAATGAAC+TGG - chr3_4:24196153-24196172 None:intergenic 35.0%
ACATATTCAGAGACTCCATT+TGG - chr3_4:24196284-24196303 None:intergenic 35.0%
!!! AGATACAAGTTTTGAACAGC+AGG + chr3_4:24196446-24196465 Msa0495220:intron 35.0%
AGAAATGTCATGTACACAAC+TGG + chr3_4:24196515-24196534 Msa0495220:intron 35.0%
TTTCACTTCATTTGAAGGTC+TGG - chr3_4:24196625-24196644 None:intergenic 35.0%
ATACTAATCGCATAATGGCA+AGG + chr3_4:24196674-24196693 Msa0495220:intron 35.0%
TACTAATCGCATAATGGCAA+GGG + chr3_4:24196675-24196694 Msa0495220:intron 35.0%
!! AAAGAAGAGTCAAGTTGACT+TGG + chr3_4:24196704-24196723 Msa0495220:intron 35.0%
ACTCAAATTACATTGCTAGC+CGG + chr3_4:24196729-24196748 Msa0495220:intron 35.0%
CATACTCATCAGTTTATGTC+CGG - chr3_4:24196751-24196770 None:intergenic 35.0%
! CGGATAAATTTTCTATCCGT+CGG + chr3_4:24197459-24197478 Msa0495220:intron 35.0%
TTTATGTGAATGCAAACCGA+CGG - chr3_4:24197478-24197497 None:intergenic 35.0%
TCAGACCTTTACAACTATAC+AGG + chr3_4:24197512-24197531 Msa0495220:intron 35.0%
GACAAGAAATCCATAAGTGA+TGG + chr3_4:24197567-24197586 Msa0495220:intron 35.0%
! AGAAATCCATAAGTGATGGA+CGG + chr3_4:24197571-24197590 Msa0495220:intron 35.0%
ACAAAATCGCAAATCGCAAA+CGG + chr3_4:24198002-24198021 Msa0495220:intron 35.0%
GAAATTTGAACAGGAGAAGA+AGG - chr3_4:24198150-24198169 None:intergenic 35.0%
GAAATTTGAACAGGAGAAGA+AGG - chr3_4:24198150-24198169 None:intergenic 35.0%
TAAGGTTTCAAAAAACGGAC+CGG - chr3_4:24198295-24198314 None:intergenic 35.0%
! GAGAGATGATTTTGTCTGAT+AGG + chr3_4:24198671-24198690 Msa0495220:CDS 35.0%
! AAAGAGGGGTCTAAAATTTC+AGG + chr3_4:24198910-24198929 Msa0495220:CDS 35.0%
! GGTCTAAAATTTCAGGATCA+GGG + chr3_4:24198917-24198936 Msa0495220:CDS 35.0%
! GTCTAAAATTTCAGGATCAG+GGG + chr3_4:24198918-24198937 Msa0495220:CDS 35.0%
! TCTAAAATTTCAGGATCAGG+GGG + chr3_4:24198919-24198938 Msa0495220:CDS 35.0%
ACCTACTTTCACTTTCACTA+TGG - chr3_4:24198984-24199003 None:intergenic 35.0%
! GAAGCTTTGTCTGAAAATGA+AGG + chr3_4:24199024-24199043 Msa0495220:CDS 35.0%
ATTTGAAAAGCCATCGTTTG+AGG + chr3_4:24199083-24199102 Msa0495220:CDS 35.0%
! TCTTTTATGTCCTCAAACGA+TGG - chr3_4:24199096-24199115 None:intergenic 35.0%
!! TGTAAGTTTTGACCTTGGAA+TGG - chr3_4:24199124-24199143 None:intergenic 35.0%
! TGATTGTTGGTTGTTTCGTT+AGG + chr3_4:24199175-24199194 Msa0495220:CDS 35.0%
! GATTGTTGGTTGTTTCGTTA+GGG + chr3_4:24199176-24199195 Msa0495220:CDS 35.0%
ACAAGTACTTGAATGTTGTC+TGG + chr3_4:24199307-24199326 Msa0495220:CDS 35.0%
CAAGTACTTGAATGTTGTCT+GGG + chr3_4:24199308-24199327 Msa0495220:CDS 35.0%
AAGTACTTGAATGTTGTCTG+GGG + chr3_4:24199309-24199328 Msa0495220:CDS 35.0%
! TTTCCAATTCCCTTTTCAAC+CGG - chr3_4:24199590-24199609 None:intergenic 35.0%
!! CAGGTTATGATCCTTTTTCA+AGG + chr3_4:24199808-24199827 Msa0495220:CDS 35.0%
!!! ATGATCCTTTTTCAAGGAGA+TGG + chr3_4:24199814-24199833 Msa0495220:CDS 35.0%
CAGAGAATTGAAGAAGTTGT+TGG + chr3_4:24200134-24200153 Msa0495220:CDS 35.0%
GTGATTACAAGAGAAGAAGA+GGG + chr3_4:24200210-24200229 Msa0495220:CDS 35.0%
AGAATTCAGATCCAGGTTTA+TGG + chr3_4:24200587-24200606 Msa0495220:three_prime_UTR 35.0%
ACGTCTAATTTCCATAAACC+TGG - chr3_4:24200601-24200620 None:intergenic 35.0%
TGTAATGTTTATTGGGTACG+TGG + chr3_4:24200629-24200648 Msa0495220:three_prime_UTR 35.0%
AACCTTGAAGGGTTACAAAT+TGG + chr3_4:24200699-24200718 Msa0495220:three_prime_UTR 35.0%
ATCCAATTTGTAACCCTTCA+AGG - chr3_4:24200704-24200723 None:intergenic 35.0%
AGAAAAAGATAAACCAAGGC+TGG - chr3_4:24200730-24200749 None:intergenic 35.0%
CATGCTATCACAAACTGTCA+TGG - chr3_4:24193158-24193177 None:intergenic 40.0%
CATGACAGTTTGTGATAGCA+TGG + chr3_4:24193156-24193175 Msa0495220:intron 40.0%
AAGTATATAAGACTGGGGTG+CGG + chr3_4:24193271-24193290 Msa0495220:intron 40.0%
!! AGTTTCTGTTTTGAGCTGCA+GGG + chr3_4:24193375-24193394 Msa0495220:intron 40.0%
!! GTTTTTGTGTTTCTGCCATC+TGG + chr3_4:24193399-24193418 Msa0495220:intron 40.0%
TTCAGCAGAAAACCAGAAAG+TGG - chr3_4:24193486-24193505 None:intergenic 40.0%
!!! ACTTTCTGGTTTTCTGCTGA+AGG + chr3_4:24193485-24193504 Msa0495220:intron 40.0%
!!! CTTTCTGGTTTTCTGCTGAA+GGG + chr3_4:24193486-24193505 Msa0495220:intron 40.0%
! CGTAGGTTTTTCCGGTATAT+TGG + chr3_4:24193571-24193590 Msa0495220:intron 40.0%
TGGAACGAGACAACAAAGAT+AGG + chr3_4:24193767-24193786 Msa0495220:intron 40.0%
ACCATCGCAATACTAGAAAC+TGG - chr3_4:24193884-24193903 None:intergenic 40.0%
TTTGACTCTCTTGCATCTGT+TGG + chr3_4:24193903-24193922 Msa0495220:intron 40.0%
ATTATGAGTGCTTGGATAGG+TGG + chr3_4:24194189-24194208 Msa0495220:intron 40.0%
TGATGACTAACATGCATGGA+GGG - chr3_4:24194252-24194271 None:intergenic 40.0%
! TTGATGACTAACATGCATGG+AGG - chr3_4:24194253-24194272 None:intergenic 40.0%
!!! GTGGTGTCTTGTTTTCTGAT+TGG + chr3_4:24194499-24194518 Msa0495220:intron 40.0%
GCAGCTCGAAAATAAATGCA+AGG - chr3_4:24194553-24194572 None:intergenic 40.0%
TTGGTAGAGAGATGTGTTAG+AGG + chr3_4:24194595-24194614 Msa0495220:intron 40.0%
!!! GGAATGTCTCTTTTTCAGGT+TGG + chr3_4:24195245-24195264 Msa0495220:intron 40.0%
GCTGTGTTTGTTTGTTTCGA+TGG + chr3_4:24195267-24195286 Msa0495220:intron 40.0%
! AACCCGAGCAATTCTGATTT+TGG - chr3_4:24195302-24195321 None:intergenic 40.0%
TCTGGATCTTTGCTGAAGAT+GGG + chr3_4:24195332-24195351 Msa0495220:intron 40.0%
GCTGAAGATGGGATGAAAAA+TGG + chr3_4:24195343-24195362 Msa0495220:intron 40.0%
!! TCTGAAATAGGTGTTGATGG+TGG - chr3_4:24195823-24195842 None:intergenic 40.0%
!!! TCCAACACCCTCCATTTTTT+CGG - chr3_4:24195855-24195874 None:intergenic 40.0%
!! AAAAAATGGAGGGTGTTGGA+CGG + chr3_4:24195855-24195874 Msa0495220:intron 40.0%
CTAAAGCGCATGTTACAACA+AGG - chr3_4:24195912-24195931 None:intergenic 40.0%
!! TGGTGCTATTGTGGATGTTA+TGG + chr3_4:24196057-24196076 Msa0495220:intron 40.0%
TTAGGAATGAACTGGGACTT+GGG - chr3_4:24196145-24196164 None:intergenic 40.0%
! AAGGTTTTCTTCTCTGTGCA+AGG - chr3_4:24196176-24196195 None:intergenic 40.0%
TTTGCTACCACCAATCCAAA+TGG + chr3_4:24196266-24196285 Msa0495220:intron 40.0%
TTCAGAGACTCCATTTGGAT+TGG - chr3_4:24196279-24196298 None:intergenic 40.0%
TGGAGTCTCTGAATATGTCA+AGG + chr3_4:24196286-24196305 Msa0495220:intron 40.0%
!!! ACTATGCAGTAGTTTTGAGC+GGG - chr3_4:24196358-24196377 None:intergenic 40.0%
!!! CACTATGCAGTAGTTTTGAG+CGG - chr3_4:24196359-24196378 None:intergenic 40.0%
GCTCAAAACTACTGCATAGT+GGG + chr3_4:24196358-24196377 Msa0495220:intron 40.0%
TTCTTTCCTATCACAGTGCT+TGG + chr3_4:24196411-24196430 Msa0495220:intron 40.0%
!! TCTTTTCCAAGCACTGTGAT+AGG - chr3_4:24196420-24196439 None:intergenic 40.0%
ATCTCTATGATGTGTGAGAG+AGG + chr3_4:24196476-24196495 Msa0495220:intron 40.0%
GTTAGGATCAAATGACACCA+AGG + chr3_4:24196881-24196900 Msa0495220:intron 40.0%
TTGTTGTCCAATAACGGTCA+CGG + chr3_4:24198229-24198248 Msa0495220:intron 40.0%
! CTGCTGATACCGTTTTGTAA+CGG + chr3_4:24198255-24198274 Msa0495220:intron 40.0%
! GATGATGACTCTGATGATGA+TGG + chr3_4:24198541-24198560 Msa0495220:CDS 40.0%
AGGAGTGATGAATCTGATGT+TGG + chr3_4:24198586-24198605 Msa0495220:CDS 40.0%
TGTTGGCGATGATCTTTACA+AGG + chr3_4:24198603-24198622 Msa0495220:CDS 40.0%
CGATGATCTTTACAAGGATG+AGG + chr3_4:24198609-24198628 Msa0495220:CDS 40.0%
CATCTACTAGATCTTCTGAC+AGG + chr3_4:24198806-24198825 Msa0495220:CDS 40.0%
! GGGTCTAAAATTTCAGGATC+AGG + chr3_4:24198916-24198935 Msa0495220:CDS 40.0%
TGGCTTGAGCTACTGAAATT+AGG - chr3_4:24198964-24198983 None:intergenic 40.0%
GCCATAGTGAAAGTGAAAGT+AGG + chr3_4:24198980-24198999 Msa0495220:CDS 40.0%
GATGATGACAAGATAATGCC+TGG + chr3_4:24199060-24199079 Msa0495220:CDS 40.0%
! AACGATGGCTTTTCAAATCC+AGG - chr3_4:24199081-24199100 None:intergenic 40.0%
!!! GTTTATGGAGCCCTTTTTTG+AGG + chr3_4:24199149-24199168 Msa0495220:CDS 40.0%
!! TGTTTCGTTAGGGTTGGTAT+TGG + chr3_4:24199186-24199205 Msa0495220:CDS 40.0%
GGTGAAAAATGTTGATGCCT+CGG + chr3_4:24199245-24199264 Msa0495220:CDS 40.0%
TGTTTAAACTCCTCCTCAAG+CGG - chr3_4:24199387-24199406 None:intergenic 40.0%
TTGAGGAGGAGTTTAAACAG+TGG + chr3_4:24199388-24199407 Msa0495220:CDS 40.0%
TGAGGAGGAGTTTAAACAGT+GGG + chr3_4:24199389-24199408 Msa0495220:CDS 40.0%
!! GGAGTTTAAACAGTGGGTTA+AGG + chr3_4:24199395-24199414 Msa0495220:CDS 40.0%
TTCTAACATCTGCTTCACAG+TGG - chr3_4:24199517-24199536 None:intergenic 40.0%
AGAAAAAATCTATCTCGCGG+AGG + chr3_4:24199538-24199557 Msa0495220:CDS 40.0%
TTCTCAGCTGCAACATTTAG+TGG - chr3_4:24199564-24199583 None:intergenic 40.0%
ACTAAATGTTGCAGCTGAGA+AGG + chr3_4:24199563-24199582 Msa0495220:CDS 40.0%
!! CCAATTCTTGCAGTTTTGTC+TGG - chr3_4:24199653-24199672 None:intergenic 40.0%
CCAGACAAAACTGCAAGAAT+TGG + chr3_4:24199650-24199669 Msa0495220:CDS 40.0%
GACAAAACTGCAAGAATTGG+AGG + chr3_4:24199653-24199672 Msa0495220:CDS 40.0%
CTGAGATGAACAGAAAGAAC+AGG + chr3_4:24199721-24199740 Msa0495220:CDS 40.0%
CTAGTCCATCTCCTTGAAAA+AGG - chr3_4:24199822-24199841 None:intergenic 40.0%
TAATTCAAAACCGGCTGAAG+AGG + chr3_4:24199857-24199876 Msa0495220:CDS 40.0%
GCAGCTGGAAATAATACTTC+TGG + chr3_4:24199882-24199901 Msa0495220:CDS 40.0%
GCTGGAAATAATACTTCTGG+TGG + chr3_4:24199885-24199904 Msa0495220:CDS 40.0%
CTAGCAATGTGGCAAAAGTT+TGG + chr3_4:24200071-24200090 Msa0495220:CDS 40.0%
CATCAGCTGACATTAACAGT+TGG + chr3_4:24200188-24200207 Msa0495220:CDS 40.0%
GGTGATTACAAGAGAAGAAG+AGG + chr3_4:24200209-24200228 Msa0495220:CDS 40.0%
TCACTGCGAAAGTTAGATTG+AGG + chr3_4:24200529-24200548 Msa0495220:three_prime_UTR 40.0%
!!! TAAGTTTTAAAGGCTCGTCC+TGG + chr3_4:24200556-24200575 Msa0495220:three_prime_UTR 40.0%
GCAGCTCAAAACAGAAACTG+AGG - chr3_4:24193374-24193393 None:intergenic 45.0%
!! CAGTTTCTGTTTTGAGCTGC+AGG + chr3_4:24193374-24193393 Msa0495220:intron 45.0%
CTCTTGGTTTACTGTCAGCT+GGG + chr3_4:24193511-24193530 Msa0495220:intron 45.0%
! TACTGTCAGCTGGGTTGTTT+TGG + chr3_4:24193520-24193539 Msa0495220:intron 45.0%
GCAAGAAGCAAAAACACTCG+CGG - chr3_4:24193620-24193639 None:intergenic 45.0%
GTGTAGTTGCCTGTTTGCTT+AGG + chr3_4:24193716-24193735 Msa0495220:intron 45.0%
!! GCCAGTTTCTAGTATTGCGA+TGG + chr3_4:24193880-24193899 Msa0495220:intron 45.0%
! TTTTGTGCAAGGAGCAAGTG+CGG - chr3_4:24194728-24194747 None:intergenic 45.0%
AATTGCTCGGGTTCTTCTTG+TGG + chr3_4:24195309-24195328 Msa0495220:intron 45.0%
GTCTGGATCTTTGCTGAAGA+TGG + chr3_4:24195331-24195350 Msa0495220:intron 45.0%
GGTTGTGTGATTGTGAAGCA+TGG + chr3_4:24195462-24195481 Msa0495220:intron 45.0%
! TCCGAAAAAATGGAGGGTGT+TGG + chr3_4:24195851-24195870 Msa0495220:intron 45.0%
ACAAGGACTCATCAACTGTG+AGG - chr3_4:24195895-24195914 None:intergenic 45.0%
! CCTTGCTGAGTTTTCTTGCT+AGG - chr3_4:24195991-24196010 None:intergenic 45.0%
CCTAGCAAGAAAACTCAGCA+AGG + chr3_4:24195988-24196007 Msa0495220:intron 45.0%
!!! CAGCAAGGTGTCGTGTATTT+TGG + chr3_4:24196003-24196022 Msa0495220:intron 45.0%
GTTAGGAATGAACTGGGACT+TGG - chr3_4:24196146-24196165 None:intergenic 45.0%
CTGTGCAAGGTGAAACTGTT+AGG - chr3_4:24196163-24196182 None:intergenic 45.0%
! AGAGACTCCATTTGGATTGG+TGG - chr3_4:24196276-24196295 None:intergenic 45.0%
CGCTCAAAACTACTGCATAG+TGG + chr3_4:24196357-24196376 Msa0495220:intron 45.0%
TCTCTTCCGTCCATCACTTA+TGG - chr3_4:24197580-24197599 None:intergenic 45.0%
! TGATGGACGGAAGAGAACAT+AGG + chr3_4:24197584-24197603 Msa0495220:intron 45.0%
TTCAAAAAACGGACCGGTAC+CGG - chr3_4:24198289-24198308 None:intergenic 45.0%
TTATACCAGCAGCCTCCAAA+AGG - chr3_4:24198468-24198487 None:intergenic 45.0%
ATCAGAGTCATCATCGTCTC+CGG - chr3_4:24198536-24198555 None:intergenic 45.0%
!! GATGACTCTGATGATGATGG+TGG + chr3_4:24198544-24198563 Msa0495220:CDS 45.0%
ATAGCATCCAAGCGTGACAA+GGG + chr3_4:24198730-24198749 Msa0495220:CDS 45.0%
TACATTTCCCTTGTCACGCT+TGG - chr3_4:24198740-24198759 None:intergenic 45.0%
GATGACATCACACGAGAAGA+CGG - chr3_4:24198790-24198809 None:intergenic 45.0%
TGAATGAACTGCGTGCTAAG+AGG + chr3_4:24198851-24198870 Msa0495220:CDS 45.0%
TTCAACATCCTCGTCACTAC+GGG - chr3_4:24199007-24199026 None:intergenic 45.0%
CTTCAACATCCTCGTCACTA+CGG - chr3_4:24199008-24199027 None:intergenic 45.0%
! GTTGGTTGTTTCGTTAGGGT+TGG + chr3_4:24199180-24199199 Msa0495220:CDS 45.0%
! GTATTGGCAGGTCAAAGACT+GGG + chr3_4:24199202-24199221 Msa0495220:CDS 45.0%
ACCATACAGAGCCTGTAGAT+AGG - chr3_4:24199228-24199247 None:intergenic 45.0%
ATACAGTCGATTAGGATCCG+AGG - chr3_4:24199265-24199284 None:intergenic 45.0%
TTTAAACTCCTCCTCAAGCG+GGG - chr3_4:24199385-24199404 None:intergenic 45.0%
GTTTAAACTCCTCCTCAAGC+GGG - chr3_4:24199386-24199405 None:intergenic 45.0%
GTTAAGGAAGTAGAGCGAAG+TGG + chr3_4:24199411-24199430 Msa0495220:CDS 45.0%
TGAGAAGGACCGGTTGAAAA+GGG + chr3_4:24199578-24199597 Msa0495220:CDS 45.0%
TGTCTGGATCTTCTCTACTC+CGG - chr3_4:24199637-24199656 None:intergenic 45.0%
TGCAAGAATTGGAGGAATCC+CGG + chr3_4:24199661-24199680 Msa0495220:CDS 45.0%
!! TAAAGCATTGAAAGCAGGGG+AGG + chr3_4:24199785-24199804 Msa0495220:CDS 45.0%
!! CAAGGAGATGGACTAGATCA+AGG + chr3_4:24199826-24199845 Msa0495220:CDS 45.0%
! TAATACTTCTGGTGGTGCAG+TGG + chr3_4:24199893-24199912 Msa0495220:CDS 45.0%
! AATACTTCTGGTGGTGCAGT+GGG + chr3_4:24199894-24199913 Msa0495220:CDS 45.0%
TGCCAATATCGCTAGCAATG+TGG + chr3_4:24200060-24200079 Msa0495220:CDS 45.0%
TGCCACATTGCTAGCGATAT+TGG - chr3_4:24200065-24200084 None:intergenic 45.0%
GCAATGTGGCAAAAGTTTGG+TGG + chr3_4:24200074-24200093 Msa0495220:CDS 45.0%
! TTTCGAGTCCCAGAAAACGA+TGG + chr3_4:24200158-24200177 Msa0495220:CDS 45.0%
! GACTCCTTCCATCGTTTTCT+GGG - chr3_4:24200169-24200188 None:intergenic 45.0%
! TGACTCCTTCCATCGTTTTC+TGG - chr3_4:24200170-24200189 None:intergenic 45.0%
CAAATTGGATCAACCAGCCT+TGG + chr3_4:24200714-24200733 Msa0495220:three_prime_UTR 45.0%
!!! AAATAAAATATATTTTGATT+AGG + chr3_4:24195666-24195685 Msa0495220:intron 5.0%
! TTGTGTTTCTGCCATCTGGG+TGG + chr3_4:24193403-24193422 Msa0495220:intron 50.0%
TTTCTGCCATCTGGGTGGTT+TGG + chr3_4:24193408-24193427 Msa0495220:intron 50.0%
AACCAACAGACACCAACAGC+AGG - chr3_4:24193448-24193467 None:intergenic 50.0%
!! GTCTGTTGGTTCGCAGTGTT+TGG + chr3_4:24193457-24193476 Msa0495220:intron 50.0%
! AGTGTTTGGCAGCCACTTTC+TGG + chr3_4:24193471-24193490 Msa0495220:intron 50.0%
!! TTTCTGCTGAAGGGTGCTCT+TGG + chr3_4:24193495-24193514 Msa0495220:intron 50.0%
GCTCTTGGTTTACTGTCAGC+TGG + chr3_4:24193510-24193529 Msa0495220:intron 50.0%
!! TTTTGGCCGAGAGGCTTTGT+GGG + chr3_4:24193537-24193556 Msa0495220:intron 50.0%
! GAGTGGGTCGTAGGTTTTTC+CGG + chr3_4:24193563-24193582 Msa0495220:intron 50.0%
GCATCAGGTTCTTGCACCAT+TGG + chr3_4:24194031-24194050 Msa0495220:intron 50.0%
ACTGAGAGAGACGGAATGAG+AGG + chr3_4:24194702-24194721 Msa0495220:intron 50.0%
CTTGCGATTTGCGATTCTGG+TGG - chr3_4:24198076-24198095 None:intergenic 50.0%
CTGCTTGCGATTTGCGATTC+TGG - chr3_4:24198079-24198098 None:intergenic 50.0%
CAGAATCGCAAATCGCAAGC+AGG + chr3_4:24198077-24198096 Msa0495220:intron 50.0%
GGATTGCGGCCGTTACAAAA+CGG - chr3_4:24198267-24198286 None:intergenic 50.0%
! TTTTGTAACGGCCGCAATCC+CGG + chr3_4:24198267-24198286 Msa0495220:intron 50.0%
TCAAAAAACGGACCGGTACC+GGG - chr3_4:24198288-24198307 None:intergenic 50.0%
!! AATGACCTTTTGGAGGCTGC+TGG + chr3_4:24198460-24198479 Msa0495220:CDS 50.0%
GTCTGATAGGGCTGCTAAGA+AGG + chr3_4:24198684-24198703 Msa0495220:CDS 50.0%
GTCACGCTTGGATGCTATCT+TGG - chr3_4:24198728-24198747 None:intergenic 50.0%
GATAGCATCCAAGCGTGACA+AGG + chr3_4:24198729-24198748 Msa0495220:CDS 50.0%
ATCACACGAGAAGACGGAAG+AGG - chr3_4:24198784-24198803 None:intergenic 50.0%
TTCTGACAGGTCAGCTGCTA+AGG + chr3_4:24198819-24198838 Msa0495220:CDS 50.0%
! TCAGGGGGTTTTCCGCAAAT+AGG + chr3_4:24198934-24198953 Msa0495220:CDS 50.0%
! CAGGGGGTTTTCCGCAAATA+GGG + chr3_4:24198935-24198954 Msa0495220:CDS 50.0%
!! TCGTTAGGGTTGGTATTGGC+AGG + chr3_4:24199190-24199209 Msa0495220:CDS 50.0%
!! GGTATTGGCAGGTCAAAGAC+TGG + chr3_4:24199201-24199220 Msa0495220:CDS 50.0%
CAAAGACTGGGCCTATCTAC+AGG + chr3_4:24199214-24199233 Msa0495220:CDS 50.0%
GCCTATCTACAGGCTCTGTA+TGG + chr3_4:24199224-24199243 Msa0495220:CDS 50.0%
TTAAACTCCTCCTCAAGCGG+GGG - chr3_4:24199384-24199403 None:intergenic 50.0%
AAGGAAGTAGAGCGAAGTGG+TGG + chr3_4:24199414-24199433 Msa0495220:CDS 50.0%
CATCTAGCCTCTTCAGCATC+CGG - chr3_4:24199440-24199459 None:intergenic 50.0%
GATGCTGAAGAGGCTAGATG+TGG + chr3_4:24199440-24199459 Msa0495220:CDS 50.0%
ATGTTGCAGCTGAGAAGGAC+CGG + chr3_4:24199568-24199587 Msa0495220:CDS 50.0%
CTGAGAAGGACCGGTTGAAA+AGG + chr3_4:24199577-24199596 Msa0495220:CDS 50.0%
GGACCGGTTGAAAAGGGAAT+TGG + chr3_4:24199584-24199603 Msa0495220:CDS 50.0%
GAAAGCAAGAACGATGCAGC+CGG + chr3_4:24199615-24199634 Msa0495220:CDS 50.0%
TGGAGGAATCCCGGAAATCT+CGG + chr3_4:24199670-24199689 Msa0495220:CDS 50.0%
!! TGGGTAATGGAGGCAGCAAT+GGG + chr3_4:24199913-24199932 Msa0495220:CDS 50.0%
AATGGAGGCAGCAATGGGAT+TGG + chr3_4:24199918-24199937 Msa0495220:CDS 50.0%
TGGGATTGGAGCTGGTATGA+CGG + chr3_4:24199932-24199951 Msa0495220:CDS 50.0%
ACAAGAGCTCCAGTGGATGA+AGG + chr3_4:24200005-24200024 Msa0495220:CDS 50.0%
GACTCTGTTCCTTCATCCAC+TGG - chr3_4:24200017-24200036 None:intergenic 50.0%
! CAAAAGTTTGGTGGAGCGCA+GGG + chr3_4:24200083-24200102 Msa0495220:CDS 50.0%
GAGTCCCAGAAAACGATGGA+AGG + chr3_4:24200162-24200181 Msa0495220:CDS 50.0%
TATAAGACTGGGGTGCGGTG+CGG + chr3_4:24193276-24193295 Msa0495220:intron 55.0%
TCTTGGCCAAACCACCCAGA+TGG - chr3_4:24193417-24193436 None:intergenic 55.0%
! ATCTGGGTGGTTTGGCCAAG+AGG + chr3_4:24193416-24193435 Msa0495220:intron 55.0%
AACAGCAGGACAAGGCCTCT+TGG - chr3_4:24193434-24193453 None:intergenic 55.0%
! AAGAGGCCTTGTCCTGCTGT+TGG + chr3_4:24193433-24193452 Msa0495220:intron 55.0%
CAGACACCAACAGCAGGACA+AGG - chr3_4:24193442-24193461 None:intergenic 55.0%
! GTCCTGCTGTTGGTGTCTGT+TGG + chr3_4:24193443-24193462 Msa0495220:intron 55.0%
!! GTTTTGGCCGAGAGGCTTTG+TGG + chr3_4:24193536-24193555 Msa0495220:intron 55.0%
! TTTGGCCGAGAGGCTTTGTG+GGG + chr3_4:24193538-24193557 Msa0495220:intron 55.0%
GGAGGGAAACTCTACCGAGA+GGG - chr3_4:24194235-24194254 None:intergenic 55.0%
TGGAGGGAAACTCTACCGAG+AGG - chr3_4:24194236-24194255 None:intergenic 55.0%
TTGCGTGCGACTGAGAGAGA+CGG + chr3_4:24194693-24194712 Msa0495220:intron 55.0%
CTCGGGTTCTTCTTGTGGTC+TGG + chr3_4:24195314-24195333 Msa0495220:intron 55.0%
AATCGCAAACGGCAAGCAGC+AGG + chr3_4:24198013-24198032 Msa0495220:intron 55.0%
GCAGTCACCGTGACCGTTAT+TGG - chr3_4:24198239-24198258 None:intergenic 55.0%
!! TGATGGTGGTTCTGACCGTG+AGG + chr3_4:24198558-24198577 Msa0495220:CDS 55.0%
CATCACTCCTGTCCACCTCA+CGG - chr3_4:24198576-24198595 None:intergenic 55.0%
ACACGAGAAGACGGAAGAGG+AGG - chr3_4:24198781-24198800 None:intergenic 55.0%
GACAGGTCAGCTGCTAAGGA+TGG + chr3_4:24198823-24198842 Msa0495220:CDS 55.0%
TTCAGCTCGCGATGTGCTTC+CGG - chr3_4:24198892-24198911 None:intergenic 55.0%
AGCACATCGCGAGCTGAAAG+AGG + chr3_4:24198894-24198913 Msa0495220:CDS 55.0%
GCACATCGCGAGCTGAAAGA+GGG + chr3_4:24198895-24198914 Msa0495220:CDS 55.0%
CACATCGCGAGCTGAAAGAG+GGG + chr3_4:24198896-24198915 Msa0495220:CDS 55.0%
AAGTAGGTCCCGTAGTGACG+AGG + chr3_4:24198996-24199015 Msa0495220:CDS 55.0%
GAAATGAGACCTCTGCTGCG+AGG + chr3_4:24199331-24199350 Msa0495220:CDS 55.0%
AAGTAGAGCGAAGTGGTGGC+CGG + chr3_4:24199418-24199437 Msa0495220:CDS 55.0%
GCTGAAGAGGCTAGATGTGG+TGG + chr3_4:24199443-24199462 Msa0495220:CDS 55.0%
GGAGGAATCCCGGAAATCTC+GGG + chr3_4:24199671-24199690 Msa0495220:CDS 55.0%
ATCCCGGAAATCTCGGGAGA+AGG + chr3_4:24199677-24199696 Msa0495220:CDS 55.0%
GTCCTTCTCCCGAGATTTCC+GGG - chr3_4:24199682-24199701 None:intergenic 55.0%
CGTCCTTCTCCCGAGATTTC+CGG - chr3_4:24199683-24199702 None:intergenic 55.0%
CTCAGAAAGCCTCAGAGCCT+TGG - chr3_4:24199706-24199725 None:intergenic 55.0%
! TCTGGTGGTGCAGTGGGTAA+TGG + chr3_4:24199900-24199919 Msa0495220:CDS 55.0%
!! GTGGGTAATGGAGGCAGCAA+TGG + chr3_4:24199912-24199931 Msa0495220:CDS 55.0%
AGCAGCAGCTTCCAAAGCCT+CGG - chr3_4:24199964-24199983 None:intergenic 55.0%
! TGCTGCTGGTGCTGGAAAGT+TGG + chr3_4:24199977-24199996 Msa0495220:CDS 55.0%
GGTAGACACAAGAGCTCCAG+TGG + chr3_4:24199998-24200017 Msa0495220:CDS 55.0%
! GCAAAAGTTTGGTGGAGCGC+AGG + chr3_4:24200082-24200101 Msa0495220:CDS 55.0%
GGGAGTTCAGGCAGGGTTTA+TGG + chr3_4:24200103-24200122 Msa0495220:CDS 55.0%
!!! GCTGGGTTGTTTTGGCCGAG+AGG + chr3_4:24193528-24193547 Msa0495220:intron 60.0%
CTCCACCCCACAAAGCCTCT+CGG - chr3_4:24193546-24193565 None:intergenic 60.0%
! AGAGGCTTTGTGGGGTGGAG+TGG + chr3_4:24193546-24193565 Msa0495220:intron 60.0%
! GAGGCTTTGTGGGGTGGAGT+GGG + chr3_4:24193547-24193566 Msa0495220:intron 60.0%
GCTCATCCTAGCTGCCCTCT+CGG + chr3_4:24194218-24194237 Msa0495220:intron 60.0%
ACTCTACCGAGAGGGCAGCT+AGG - chr3_4:24194227-24194246 None:intergenic 60.0%
CTCAGTCGCACGCAACAGTG+CGG - chr3_4:24194688-24194707 None:intergenic 60.0%
!! TGGTGGTTCTGACCGTGAGG+TGG + chr3_4:24198561-24198580 Msa0495220:CDS 60.0%
GTTCTGACCGTGAGGTGGAC+AGG + chr3_4:24198566-24198585 Msa0495220:CDS 60.0%
CGAGAAGACGGAAGAGGAGG+CGG - chr3_4:24198778-24198797 None:intergenic 60.0%
GAGGCTGAAACAGCGAGAGC+CGG + chr3_4:24198870-24198889 Msa0495220:CDS 60.0%
ATGAGACCTCTGCTGCGAGG+TGG + chr3_4:24199334-24199353 Msa0495220:CDS 60.0%
CATTTGCCACCTCGCAGCAG+AGG - chr3_4:24199343-24199362 None:intergenic 60.0%
CTCTGCTGCGAGGTGGCAAA+TGG + chr3_4:24199341-24199360 Msa0495220:CDS 60.0%
TGCGAGGTGGCAAATGGCCA+TGG + chr3_4:24199347-24199366 Msa0495220:CDS 60.0%
CGGGGGAGAATCGCTAACCA+TGG - chr3_4:24199367-24199386 None:intergenic 60.0%
TAGCGATTCTCCCCCGCTTG+AGG + chr3_4:24199371-24199390 Msa0495220:CDS 60.0%
ATCTCGGGAGAAGGACGCCA+AGG + chr3_4:24199686-24199705 Msa0495220:CDS 60.0%
AGAAGGACGCCAAGGCTCTG+AGG + chr3_4:24199694-24199713 Msa0495220:CDS 60.0%
GCATTGAAAGCAGGGGAGGC+AGG + chr3_4:24199789-24199808 Msa0495220:CDS 60.0%
! GGTGGTGCAGTGGGTAATGG+AGG + chr3_4:24199903-24199922 Msa0495220:CDS 60.0%
GGCAGCAATGGGATTGGAGC+TGG + chr3_4:24199924-24199943 Msa0495220:CDS 60.0%
AGCTTCCAAAGCCTCGGCAG+TGG - chr3_4:24199958-24199977 None:intergenic 60.0%
!! GAGGCTTTGGAAGCTGCTGC+TGG + chr3_4:24199963-24199982 Msa0495220:CDS 60.0%
TTGGAAGCTGCTGCTGGTGC+TGG + chr3_4:24199969-24199988 Msa0495220:CDS 60.0%
GAGGCTGGGGTATGCTGCTG+AGG + chr3_4:24193304-24193323 Msa0495220:intron 65.0%
TGTGGGGTGGAGTGGGTCGT+AGG + chr3_4:24193554-24193573 Msa0495220:intron 65.0%
AACGGCCGCAATCCCGGTAC+CGG + chr3_4:24198273-24198292 Msa0495220:intron 65.0%
! ACGGACCGGTACCGGGATTG+CGG - chr3_4:24198281-24198300 None:intergenic 65.0%
CGATTCTCCCCCGCTTGAGG+AGG + chr3_4:24199374-24199393 Msa0495220:CDS 65.0%
GTGGTGGCCGGATGCTGAAG+AGG + chr3_4:24199430-24199449 Msa0495220:CDS 65.0%
CCAGCTGCAGCCTCTTCAGC+CGG - chr3_4:24199870-24199889 None:intergenic 65.0%
TGGTATGACGGCCACTGCCG+AGG + chr3_4:24199944-24199963 Msa0495220:CDS 65.0%
TGGTGGAGCGCAGGGAGTTC+AGG + chr3_4:24200091-24200110 Msa0495220:CDS 65.0%
GAGCGCAGGGAGTTCAGGCA+GGG + chr3_4:24200096-24200115 Msa0495220:CDS 65.0%
AGACTGGGGTGCGGTGCGGT+TGG + chr3_4:24193280-24193299 Msa0495220:intron 70.0%
!! TGCGGTGCGGTTGGTGAGGC+TGG + chr3_4:24193289-24193308 Msa0495220:intron 70.0%
!! GCGGTGCGGTTGGTGAGGCT+GGG + chr3_4:24193290-24193309 Msa0495220:intron 70.0%
!! CGGTGCGGTTGGTGAGGCTG+GGG + chr3_4:24193291-24193310 Msa0495220:intron 70.0%
! GGCCGAGAGGCTTTGTGGGG+TGG + chr3_4:24193541-24193560 Msa0495220:intron 70.0%
CCGGCTGAAGAGGCTGCAGC+TGG + chr3_4:24199867-24199886 Msa0495220:CDS 70.0%
GACGGCCACTGCCGAGGCTT+TGG + chr3_4:24199950-24199969 Msa0495220:CDS 70.0%
GGAGCGCAGGGAGTTCAGGC+AGG + chr3_4:24200095-24200114 Msa0495220:CDS 70.0%
! GGGGTGCGGTGCGGTTGGTG+AGG + chr3_4:24193285-24193304 Msa0495220:intron 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 24192958 24200797 24192958 ID=Msa0495220;Name=Msa0495220
chr3_4 mRNA 24192958 24200797 24192958 ID=Msa0495220-mRNA-1;Parent=Msa0495220;Name=Msa0495220-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0.5|0.5|1|1|2|556|602
chr3_4 exon 24192958 24192962 24192958 ID=Msa0495220-mRNA-1:exon:5889;Parent=Msa0495220-mRNA-1
chr3_4 exon 24198438 24200797 24198438 ID=Msa0495220-mRNA-1:exon:5890;Parent=Msa0495220-mRNA-1
chr3_4 CDS 24192958 24192962 24192958 ID=Msa0495220-mRNA-1:cds;Parent=Msa0495220-mRNA-1
chr3_4 CDS 24198438 24200241 24198438 ID=Msa0495220-mRNA-1:cds;Parent=Msa0495220-mRNA-1
chr3_4 three_prime_UTR 24200242 24200797 24200242 ID=Msa0495220-mRNA-1:three_prime_utr;Parent=Msa0495220-mRNA-1
Gene Sequence

>Msa0495220

ATGATACAAATTATGGCTGATTTAGAAAATGACCTTTTGGAGGCTGCTGGTATAAACAAACATTCTCTCCCACCTTCATCAAAAAATCAATTTTTTGATTCCGGAGACGATGATGACTCTGATGATGATGGTGGTTCTGACCGTGAGGTGGACAGGAGTGATGAATCTGATGTTGGCGATGATCTTTACAAGGATGAGGATGACAGAAAGAAACTTTCTGAGATGACTGAACTTCAAAGAGAGATGATTTTGTCTGATAGGGCTGCTAAGAAGGATGATAAAGATATTTTGTCCAAGATAGCATCCAAGCGTGACAAGGGAAATGTATCGAGAAGAGAGACTCCGCCTCCTCTTCCGTCTTCTCGTGTGATGTCATCTACTAGATCTTCTGACAGGTCAGCTGCTAAGGATGGTGCATTGAATGAACTGCGTGCTAAGAGGCTGAAACAGCGAGAGCCGGAAGCACATCGCGAGCTGAAAGAGGGGTCTAAAATTTCAGGATCAGGGGGTTTTCCGCAAATAGGGAAACCTAATTTCAGTAGCTCAAGCCATAGTGAAAGTGAAAGTAGGTCCCGTAGTGACGAGGATGTTGAAGCTTTGTCTGAAAATGAAGGGATTATTGACAGCGATGATGACAAGATAATGCCTGGATTTGAAAAGCCATCGTTTGAGGACATAAAAGAAATCACCATTCCAAGGTCAAAACTTACAAAATGGTTTATGGAGCCCTTTTTTGAGGAGTTGATTGTTGGTTGTTTCGTTAGGGTTGGTATTGGCAGGTCAAAGACTGGGCCTATCTACAGGCTCTGTATGGTGAAAAATGTTGATGCCTCGGATCCTAATCGACTGTATAAATTAGATAATAAAACCACATACAAGTACTTGAATGTTGTCTGGGGAAATGAGACCTCTGCTGCGAGGTGGCAAATGGCCATGGTTAGCGATTCTCCCCCGCTTGAGGAGGAGTTTAAACAGTGGGTTAAGGAAGTAGAGCGAAGTGGTGGCCGGATGCTGAAGAGGCTAGATGTGGTGGAAAAAAAGCAAGACATGCAGAAGATTAATAATTTTGTTTACTCAGCAGCCACTGTGAAGCAGATGTTAGAAGAGAAAAAATCTATCTCGCGGAGGCCACTAAATGTTGCAGCTGAGAAGGACCGGTTGAAAAGGGAATTGGAAATCGCAGAAAGCAAGAACGATGCAGCCGGAGTAGAGAAGATCCAGACAAAACTGCAAGAATTGGAGGAATCCCGGAAATCTCGGGAGAAGGACGCCAAGGCTCTGAGGCTTTCTGAGATGAACAGAAAGAACAGGTTTGAGAACTTCAAAACTGCTTCTGATTTAAAGCCAGTTAATAAAGCATTGAAAGCAGGGGAGGCAGGTTATGATCCTTTTTCAAGGAGATGGACTAGATCAAGGAACTACTATAATTCAAAACCGGCTGAAGAGGCTGCAGCTGGAAATAATACTTCTGGTGGTGCAGTGGGTAATGGAGGCAGCAATGGGATTGGAGCTGGTATGACGGCCACTGCCGAGGCTTTGGAAGCTGCTGCTGGTGCTGGAAAGTTGGTAGACACAAGAGCTCCAGTGGATGAAGGAACAGAGTCAAATGTACTGCATGATTTTGAGTTGCCAATATCGCTAGCAATGTGGCAAAAGTTTGGTGGAGCGCAGGGAGTTCAGGCAGGGTTTATGGCAAAAAAACAGAGAATTGAAGAAGTTGTTGGATTTCGAGTCCCAGAAAACGATGGAAGGAGTCATCAGCTGACATTAACAGTTGGTGATTACAAGAGAAGAAGAGGGCTTCTTTGA
Protein sequence

>Msa0495220

MIQIMADLENDLLEAAGINKHSLPPSSKNQFFDSGDDDDSDDDGGSDREVDRSDESDVGDDLYKDEDDRKKLSEMTELQREMILSDRAAKKDDKDILSKIASKRDKGNVSRRETPPPLPSSRVMSSTRSSDRSAAKDGALNELRAKRLKQREPEAHRELKEGSKISGSGGFPQIGKPNFSSSSHSESESRSRSDEDVEALSENEGIIDSDDDKIMPGFEKPSFEDIKEITIPRSKLTKWFMEPFFEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDASDPNRLYKLDNKTTYKYLNVVWGNETSAARWQMAMVSDSPPLEEEFKQWVKEVERSGGRMLKRLDVVEKKQDMQKINNFVYSAATVKQMLEEKKSISRRPLNVAAEKDRLKRELEIAESKNDAAGVEKIQTKLQELEESRKSREKDAKALRLSEMNRKNRFENFKTASDLKPVNKALKAGEAGYDPFSRRWTRSRNYYNSKPAEEAAAGNNTSGGAVGNGGSNGIGAGMTATAEALEAAAGAGKLVDTRAPVDEGTESNVLHDFELPISLAMWQKFGGAQGVQAGFMAKKQRIEEVVGFRVPENDGRSHQLTLTVGDYKRRRGLL*