AlfalfaGEDB | Msa0495220

M. sativa cultivar zhongmu-4 / Msa0495220

KEGG: K15178
GO: GO:0000122 GO:0000428 GO:0000988 GO:0000989 GO:0000993 GO:0001076 GO:0001098 GO:0001099 GO:0001701 GO:0001704 GO:0001706 GO:0001711 GO:0001824 GO:0001832 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0007369 GO:0007492 GO:0008023 GO:0008150 GO:0008152 GO:0008213 GO:0009653 GO:0009790 GO:0009792 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009909 GO:0009910 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010638 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016591 GO:0016593 GO:0018022 GO:0018023 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0019827 GO:0019899 GO:0030154 GO:0030880 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032259 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0034243 GO:0034968 GO:0035987 GO:0036211 GO:0040007 GO:0043009 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045165 GO:0045309 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048589 GO:0048598 GO:0048646 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050815 GO:0051093 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051219 GO:0051239 GO:0051241 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0051568 GO:0051569 GO:0051571 GO:0055029 GO:0060255 GO:0060795 GO:0061695 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0071840 GO:0080090 GO:0080182 GO:0097159 GO:0098727 GO:0099122 GO:0140110 GO:1901363 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905269 GO:1990234 GO:1990269 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141 GO:2001252
PFAM: PF03126.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0495220	XP_003625428.1	89.280	625	39	2	5	602	1	624	0.0	1017

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0495220	sp\|Q9C950\|VIP5_ARATH	62.787	567	197	8	43	602	84	643	0.0	629

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0495220	G7KYI5	89.280	625	39	2	5	602	1	624	0.0	1017

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003270	Msa0495220	0.801381	9.248779e-49	-8.615850e-47
Msa0047250	Msa0495220	0.816981	4.178603e-52	-8.615850e-47
Msa0068430	Msa0495220	0.820865	5.472486e-53	-8.615850e-47
Msa0074750	Msa0495220	0.809487	1.846903e-50	-8.615850e-47
Msa0094010	Msa0495220	0.810962	8.880381e-51	-8.615850e-47
Msa0096580	Msa0495220	0.803864	2.844685e-49	-8.615850e-47
Msa0133720	Msa0495220	0.807594	4.683468e-50	-8.615850e-47
Msa0133820	Msa0495220	0.803992	2.675018e-49	-8.615850e-47
Msa0138210	Msa0495220	0.809501	1.834298e-50	-8.615850e-47
Msa0143510	Msa0495220	0.802916	4.469505e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0495220	MtrunA17_Chr7g0262441	89.280	625	39	2	5	602	1	624	0.0	1017
Msa0495220	MtrunA17_Chr4g0047731	63.470	657	179	8	5	602	1	655	0.0	768
Msa0495220	MtrunA17_Chr4g0014481	48.792	662	260	9	5	602	1	647	0.0	542
Msa0495220	MtrunA17_Chr4g0014471	60.000	40	16	0	563	602	3	42	1.33e-12	62.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0495220	AT1G61040.3	62.787	567	197	8	43	602	84	643	629
Msa0495220	AT1G61040.2	62.787	567	197	8	43	602	84	643	629
Msa0495220	AT1G61040.1	62.787	567	197	8	43	602	84	643	629

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Find 177 sgRNAs with CRISPR-Local

Find 526 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTACAAAATGGTTTA+TGG	0.170699	3_4:+24199134	Msa0495220:CDS
AAAGAGGGGTCTAAAATTTC+AGG	0.225292	3_4:+24198910	Msa0495220:CDS
AAATAAATCCCGGAATATCT+TGG	0.397480	3_4:-24200473	None:intergenic
AAATCTAAACTTTAATGCTA+AGG	0.477655	3_4:-24200370	None:intergenic
AAATTAGGTTTCCCTATTTG+CGG	0.450487	3_4:-24198946	None:intergenic
AACATTCAAGTACTTGTATG+TGG	0.501552	3_4:-24199301	None:intergenic
AACCTTGAAGGGTTACAAAT+TGG	0.223889	3_4:+24200699	Msa0495220:three_prime_UTR
AAGCTTTGTCTGAAAATGAA+GGG	0.535182	3_4:+24199025	Msa0495220:CDS
AAGGAAGTAGAGCGAAGTGG+TGG	0.663190	3_4:+24199414	Msa0495220:CDS
AAGTACTTGAATGTTGTCTG+GGG	0.689030	3_4:+24199309	Msa0495220:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCACCACCATGAAAATAAA+AGG	-	chr3_4:24193007-24193026	None:intergenic	30.0%
AATTTCTTTACACACTTCTC+TGG	+	chr3_4:24193214-24193233	Msa0495220:intron	30.0%
AGTTTGGTTGGGTTTAATTA+TGG	+	chr3_4:24193747-24193766	Msa0495220:intron	30.0%
TCCAAAATAATGAAAAGGTG+AGG	+	chr3_4:24194138-24194157	Msa0495220:intron	30.0%
TGTTTATCATTATGAGTGCT+TGG	+	chr3_4:24194181-24194200	Msa0495220:intron	30.0%
TGATTAATTAAGCACTAGCA+AGG	-	chr3_4:24194322-24194341	None:intergenic	30.0%
GTACATTCAGTGTTCAATTA+AGG	+	chr3_4:24194346-24194365	Msa0495220:intron	30.0%
ATGCAAGGCATAAATCATAT+TGG	-	chr3_4:24194538-24194557	None:intergenic	30.0%
CATTGTACAACTCATAACAT+TGG	+	chr3_4:24195072-24195091	Msa0495220:intron	30.0%
ACTCCTTATAACGTAATAGT+TGG	+	chr3_4:24195224-24195243	Msa0495220:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	24192958	24200797	24192958	ID=Msa0495220;Name=Msa0495220
chr3_4	mRNA	24192958	24200797	24192958	ID=Msa0495220-mRNA-1;Parent=Msa0495220;Name=Msa0495220-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|0\|0.5\|0.5\|1\|1\|2\|556\|602
chr3_4	exon	24192958	24192962	24192958	ID=Msa0495220-mRNA-1:exon:5889;Parent=Msa0495220-mRNA-1
chr3_4	exon	24198438	24200797	24198438	ID=Msa0495220-mRNA-1:exon:5890;Parent=Msa0495220-mRNA-1
chr3_4	CDS	24192958	24192962	24192958	ID=Msa0495220-mRNA-1:cds;Parent=Msa0495220-mRNA-1
chr3_4	CDS	24198438	24200241	24198438	ID=Msa0495220-mRNA-1:cds;Parent=Msa0495220-mRNA-1
chr3_4	three_prime_UTR	24200242	24200797	24200242	ID=Msa0495220-mRNA-1:three_prime_utr;Parent=Msa0495220-mRNA-1

Gene Sequence

>Msa0495220

ATGATACAAATTATGGCTGATTTAGAAAATGACCTTTTGGAGGCTGCTGGTATAAACAAACATTCTCTCCCACCTTCATCAAAAAATCAATTTTTTGATTCCGGAGACGATGATGACTCTGATGATGATGGTGGTTCTGACCGTGAGGTGGACAGGAGTGATGAATCTGATGTTGGCGATGATCTTTACAAGGATGAGGATGACAGAAAGAAACTTTCTGAGATGACTGAACTTCAAAGAGAGATGATTTTGTCTGATAGGGCTGCTAAGAAGGATGATAAAGATATTTTGTCCAAGATAGCATCCAAGCGTGACAAGGGAAATGTATCGAGAAGAGAGACTCCGCCTCCTCTTCCGTCTTCTCGTGTGATGTCATCTACTAGATCTTCTGACAGGTCAGCTGCTAAGGATGGTGCATTGAATGAACTGCGTGCTAAGAGGCTGAAACAGCGAGAGCCGGAAGCACATCGCGAGCTGAAAGAGGGGTCTAAAATTTCAGGATCAGGGGGTTTTCCGCAAATAGGGAAACCTAATTTCAGTAGCTCAAGCCATAGTGAAAGTGAAAGTAGGTCCCGTAGTGACGAGGATGTTGAAGCTTTGTCTGAAAATGAAGGGATTATTGACAGCGATGATGACAAGATAATGCCTGGATTTGAAAAGCCATCGTTTGAGGACATAAAAGAAATCACCATTCCAAGGTCAAAACTTACAAAATGGTTTATGGAGCCCTTTTTTGAGGAGTTGATTGTTGGTTGTTTCGTTAGGGTTGGTATTGGCAGGTCAAAGACTGGGCCTATCTACAGGCTCTGTATGGTGAAAAATGTTGATGCCTCGGATCCTAATCGACTGTATAAATTAGATAATAAAACCACATACAAGTACTTGAATGTTGTCTGGGGAAATGAGACCTCTGCTGCGAGGTGGCAAATGGCCATGGTTAGCGATTCTCCCCCGCTTGAGGAGGAGTTTAAACAGTGGGTTAAGGAAGTAGAGCGAAGTGGTGGCCGGATGCTGAAGAGGCTAGATGTGGTGGAAAAAAAGCAAGACATGCAGAAGATTAATAATTTTGTTTACTCAGCAGCCACTGTGAAGCAGATGTTAGAAGAGAAAAAATCTATCTCGCGGAGGCCACTAAATGTTGCAGCTGAGAAGGACCGGTTGAAAAGGGAATTGGAAATCGCAGAAAGCAAGAACGATGCAGCCGGAGTAGAGAAGATCCAGACAAAACTGCAAGAATTGGAGGAATCCCGGAAATCTCGGGAGAAGGACGCCAAGGCTCTGAGGCTTTCTGAGATGAACAGAAAGAACAGGTTTGAGAACTTCAAAACTGCTTCTGATTTAAAGCCAGTTAATAAAGCATTGAAAGCAGGGGAGGCAGGTTATGATCCTTTTTCAAGGAGATGGACTAGATCAAGGAACTACTATAATTCAAAACCGGCTGAAGAGGCTGCAGCTGGAAATAATACTTCTGGTGGTGCAGTGGGTAATGGAGGCAGCAATGGGATTGGAGCTGGTATGACGGCCACTGCCGAGGCTTTGGAAGCTGCTGCTGGTGCTGGAAAGTTGGTAGACACAAGAGCTCCAGTGGATGAAGGAACAGAGTCAAATGTACTGCATGATTTTGAGTTGCCAATATCGCTAGCAATGTGGCAAAAGTTTGGTGGAGCGCAGGGAGTTCAGGCAGGGTTTATGGCAAAAAAACAGAGAATTGAAGAAGTTGTTGGATTTCGAGTCCCAGAAAACGATGGAAGGAGTCATCAGCTGACATTAACAGTTGGTGATTACAAGAGAAGAAGAGGGCTTCTTTGA

Protein sequence

>Msa0495220

MIQIMADLENDLLEAAGINKHSLPPSSKNQFFDSGDDDDSDDDGGSDREVDRSDESDVGDDLYKDEDDRKKLSEMTELQREMILSDRAAKKDDKDILSKIASKRDKGNVSRRETPPPLPSSRVMSSTRSSDRSAAKDGALNELRAKRLKQREPEAHRELKEGSKISGSGGFPQIGKPNFSSSSHSESESRSRSDEDVEALSENEGIIDSDDDKIMPGFEKPSFEDIKEITIPRSKLTKWFMEPFFEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDASDPNRLYKLDNKTTYKYLNVVWGNETSAARWQMAMVSDSPPLEEEFKQWVKEVERSGGRMLKRLDVVEKKQDMQKINNFVYSAATVKQMLEEKKSISRRPLNVAAEKDRLKRELEIAESKNDAAGVEKIQTKLQELEESRKSREKDAKALRLSEMNRKNRFENFKTASDLKPVNKALKAGEAGYDPFSRRWTRSRNYYNSKPAEEAAAGNNTSGGAVGNGGSNGIGAGMTATAEALEAAAGAGKLVDTRAPVDEGTESNVLHDFELPISLAMWQKFGGAQGVQAGFMAKKQRIEEVVGFRVPENDGRSHQLTLTVGDYKRRRGLL*