AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0143510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0143510 MtrunA17_Chr7g0270481 97.094 826 19 1 1 821 1 826 0.0 1682
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0143510 AT3G62240.1 53.037 856 314 15 1 816 1 808 0.0 839
Msa0143510 AT2G47090.1 43.943 842 373 18 1 820 1 765 0.0 625
Msa0143510 AT2G47090.3 43.112 842 373 19 1 820 1 758 0.0 602
Msa0143510 AT2G47090.2 42.162 842 365 19 1 820 1 742 0.0 574
Msa0143510 AT2G47090.5 41.905 840 349 18 1 820 1 721 0.0 572
Msa0143510 AT2G47090.4 71.617 303 83 2 1 300 1 303 2.41e-163 492

Find 244 sgRNAs with CRISPR-Local

Find 406 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATCTGGGCATTGAAATT+AGG 0.154126 1_4:+2449313 Msa0143510:five_prime_UTR
AATGTATCTGTTATTAATTC+TGG 0.169185 1_4:+2452844 Msa0143510:CDS
GAACGATTGTTATTGCAATT+AGG 0.193587 1_4:-2449285 None:intergenic
CAAGAAAATGACGGGGTTTA+TGG 0.195895 1_4:+2453468 Msa0143510:CDS
AACGATTGTTATTGCAATTA+GGG 0.216693 1_4:-2449284 None:intergenic
AATGGTAACAATAATGATTC+TGG 0.227254 1_4:+2453939 Msa0143510:CDS
AGTTCATTGTCCCCATAAAA+TGG 0.259485 1_4:-2451595 None:intergenic
TGCTTATGTGTTGATTCAAC+TGG 0.263698 1_4:-2451492 None:intergenic
TCTTCCTTTCCTCCACTTCC+TGG 0.267843 1_4:+2452742 Msa0143510:CDS
TTGGCTGAATGGGATGATTT+TGG 0.271061 1_4:+2454214 Msa0143510:three_prime_UTR
TGATCTGGGCATTGAAATTA+GGG 0.277307 1_4:+2449314 Msa0143510:five_prime_UTR
TTGTAGAAACCACAGTTAAA+AGG 0.280870 1_4:+2454065 Msa0143510:three_prime_UTR
CTCACTTGTGCCGCAGAAAC+TGG 0.285371 1_4:-2453147 None:intergenic
GGAACAACGGACAGTTTAAA+TGG 0.311619 1_4:+2453921 Msa0143510:CDS
GGAAGAATGAATGAATTTCT+AGG 0.319291 1_4:-2449262 None:intergenic
GCTCTGTGGCTTTGAAAATC+AGG 0.326631 1_4:+2454027 Msa0143510:three_prime_UTR
CGACAAAGGTTTAGGAATAT+AGG 0.326957 1_4:+2451265 Msa0143510:CDS
ACAACAAAGTCTCAAAATTC+TGG 0.329736 1_4:+2452922 Msa0143510:CDS
GTTCAAGGCGACAAAGGTTT+AGG 0.329883 1_4:+2451257 Msa0143510:CDS
AAAATCAGGCACACTTGAAT+TGG 0.340918 1_4:+2454041 Msa0143510:three_prime_UTR
CAAAGCCACAGAGCAGAATC+AGG 0.344177 1_4:-2454018 None:intergenic
TCAAGATACCGTCAGGCCTT+AGG 0.347682 1_4:+2452694 Msa0143510:CDS
CTTAGGAGGTAATCATTTCA+TGG 0.349756 1_4:+2454115 Msa0143510:three_prime_UTR
CAATCGTTCGTGATTTGATC+TGG 0.354941 1_4:+2449299 Msa0143510:five_prime_UTR
TCGGAAGCAGAGAGAACTTT+TGG 0.358351 1_4:+2453410 Msa0143510:CDS
CACATAAGAAATGTTGTTGT+CGG 0.363908 1_4:-2451942 None:intergenic
CTTTCCTCCACTTCCTGGCC+AGG 0.366839 1_4:+2452747 Msa0143510:CDS
TCTCTCTGCTTCCGAGCATC+CGG 0.369430 1_4:-2453402 None:intergenic
CAGTTTATCTAATCAAAATA+AGG 0.369601 1_4:+2453776 Msa0143510:CDS
AACAATAATGATTCTGGAGT+TGG 0.372582 1_4:+2453945 Msa0143510:CDS
CATGGCCATTGAAGCCAGTC+TGG 0.380286 1_4:+2452534 Msa0143510:CDS
GTTCATTGTCCCCATAAAAT+GGG 0.391907 1_4:-2451594 None:intergenic
GGTGTATACTGTCAGGCTCT+TGG 0.397402 1_4:+2451043 Msa0143510:intron
GCATATGTGCAGTTTGTGTT+TGG 0.399812 1_4:+2451324 Msa0143510:CDS
GACAAAGGTTTAGGAATATA+GGG 0.400686 1_4:+2451266 Msa0143510:CDS
TGAACCTTCAGACTCGTGTT+TGG 0.406166 1_4:-2452776 None:intergenic
TTCAAGTGTTCATATGAAAG+TGG 0.409267 1_4:+2454257 Msa0143510:three_prime_UTR
AAAGCGTAATGCTGCTCTTC+AGG 0.411058 1_4:+2452275 Msa0143510:CDS
AAATAAATAGTAGGAGGGAT+TGG 0.412548 1_4:+2449118 Msa0143510:five_prime_UTR
TTTAAACTGTCCGTTGTTCC+AGG 0.413101 1_4:-2453918 None:intergenic
AAGGTAAGTCATTAGATGTT+AGG 0.416037 1_4:+2453538 Msa0143510:CDS
GTACGAGGTGTTTGGCGAAA+GGG 0.419262 1_4:+2453975 Msa0143510:CDS
GGCTGCCTGTACGAGGTGTT+TGG 0.421031 1_4:+2453967 Msa0143510:CDS
ATTTCTCTAGTACTCATATC+AGG 0.421614 1_4:-2454404 None:intergenic
CTTTAATTGCAGGCAGCACC+CGG 0.423152 1_4:+2451756 Msa0143510:intron
CAAGATACCGTCAGGCCTTA+GGG 0.429255 1_4:+2452695 Msa0143510:CDS
AGAAATGTTGTTGTCGGAAG+TGG 0.432266 1_4:-2451936 None:intergenic
CTGAATTCCATTGGCTGAAT+GGG 0.436486 1_4:+2454204 Msa0143510:three_prime_UTR
TGCTGTCTGCGCCGAACCAT+TGG 0.437829 1_4:+2449374 Msa0143510:CDS
TCAGAAATTGAAACTCCAAC+AGG 0.437868 1_4:-2453117 None:intergenic
TCAATCTGAATCAGAGATGA+AGG 0.441203 1_4:+2452002 Msa0143510:CDS
GTTTCATCTTGTACCTGAGC+TGG 0.443738 1_4:+2453368 Msa0143510:CDS
GTGAGCCAACTTCAAGTAAT+GGG 0.445956 1_4:+2452584 Msa0143510:CDS
CTCAGAGTGCGCCTTGGTGA+TGG 0.448748 1_4:+2453846 Msa0143510:CDS
CGCAACCCATTCCAATGGTT+CGG 0.449476 1_4:-2449385 None:intergenic
GCTGAATTCCATTGGCTGAA+TGG 0.451935 1_4:+2454203 Msa0143510:three_prime_UTR
TGTTAATTACTGTCTTCATC+TGG 0.454941 1_4:-2452945 None:intergenic
CAGGATCAGCGCCGTGGAAG+AGG 0.456242 1_4:+2452472 Msa0143510:CDS
TTTGTGTTTGGAGGGAAGGA+AGG 0.462491 1_4:+2451336 Msa0143510:CDS
TCAAGGACCACTTCTGATCC+TGG 0.464866 1_4:+2453900 Msa0143510:CDS
TGTAGAAACCACAGTTAAAA+GGG 0.466620 1_4:+2454066 Msa0143510:three_prime_UTR
GAAGAATGAATGAATTTCTA+GGG 0.469331 1_4:-2449261 None:intergenic
AGTCTCCAGACTGGCTTCAA+TGG 0.471247 1_4:-2452539 None:intergenic
TCGTGTGGAAAATAAATAGT+AGG 0.472571 1_4:+2449109 Msa0143510:five_prime_UTR
CTTCTCTCACCTCAGACGGC+AGG 0.474593 1_4:-2451099 None:intergenic
AGCGGAGGCTGGCTACTTGT+AGG 0.475176 1_4:-2453177 None:intergenic
TAAACCTTCAGAAGAGAAGT+TGG 0.476136 1_4:+2453629 Msa0143510:CDS
AAGGCGCACTCTGAGGAACT+TGG 0.478049 1_4:-2453838 None:intergenic
ATTGGCCCATTACTTGAAGT+TGG 0.479995 1_4:-2452589 None:intergenic
AATAAATAGTAGGAGGGATT+GGG 0.480636 1_4:+2449119 Msa0143510:five_prime_UTR
AATGATCACGACGAAATGTC+CGG 0.484850 1_4:-2452495 None:intergenic
AACAAAGATGAGATTACATT+CGG 0.486174 1_4:-2449499 None:intergenic
AATCGAAGACGTGGAGCGGA+AGG 0.486770 1_4:-2449217 None:intergenic
TCTCCGTCATCATAAGCAAT+TGG 0.486938 1_4:-2452607 None:intergenic
TTATAGTATTCAAATTGTCC+CGG 0.487329 1_4:-2451775 None:intergenic
GCATTGAAATTAGGGTTTGA+AGG 0.487625 1_4:+2449322 Msa0143510:five_prime_UTR
ACAATAATGATTCTGGAGTT+GGG 0.488582 1_4:+2453946 Msa0143510:CDS
TTCTGAAAATCAACTTTCCA+TGG 0.491694 1_4:+2452516 Msa0143510:CDS
TCTAATCAAAATAAGGAGGA+TGG 0.493564 1_4:+2453783 Msa0143510:CDS
TCTCCACATTCAGCGGAGGC+TGG 0.494500 1_4:-2453188 None:intergenic
CCTTGGTGATGGTTCTGCTT+CGG 0.495622 1_4:+2453857 Msa0143510:CDS
ACCTCCAACTTCTCTTCTGA+AGG 0.497647 1_4:-2453633 None:intergenic
AGCAACAAAATGATGGTTCA+AGG 0.497984 1_4:+2451242 Msa0143510:CDS
TGTACGAGGTGTTTGGCGAA+AGG 0.499209 1_4:+2453974 Msa0143510:CDS
TTATTAATTCTGGAAATGCC+TGG 0.499763 1_4:+2452854 Msa0143510:CDS
ATATAGACACAATAATGAAC+AGG 0.501473 1_4:+2452453 Msa0143510:CDS
ACACTTTCCAAGAAAATGAC+GGG 0.501766 1_4:+2453460 Msa0143510:CDS
CTAATCAAAATAAGGAGGAT+GGG 0.502336 1_4:+2453784 Msa0143510:CDS
GTGGACTGTGTGCAGCAGTT+TGG 0.503287 1_4:+2453342 Msa0143510:CDS
CGTGAGCCAACTTCAAGTAA+TGG 0.503834 1_4:+2452583 Msa0143510:CDS
CTAGAGTTTGTTTGAATCTG+CGG 0.504344 1_4:-2453705 None:intergenic
TTAGATTGCGAAGGTTGTAC+AGG 0.504697 1_4:-2452895 None:intergenic
TGTTGAAGGCTGAATTCCAT+TGG 0.505006 1_4:+2454195 Msa0143510:three_prime_UTR
TCAGTCTGCCAACAAGTCCT+TGG 0.512432 1_4:+2453215 Msa0143510:CDS
TCTGCGCCGAACCATTGGAA+TGG 0.513729 1_4:+2449379 Msa0143510:CDS
TTGTCACGTGTGTCCTTCGA+TGG 0.515439 1_4:-2453045 None:intergenic
TCAAGTACAGCAAGCTGGCA+TGG 0.516669 1_4:+2454158 Msa0143510:three_prime_UTR
AAACAATAAATTTCTTGGCA+AGG 0.518069 1_4:-2451978 None:intergenic
CAAGACTATGCCCGGATGCT+CGG 0.518385 1_4:+2453391 Msa0143510:CDS
CAAACCTCGCGATGCAAACA+AGG 0.519151 1_4:-2449414 None:intergenic
CAGACTGGCTTCAATGGCCA+TGG 0.519930 1_4:-2452533 None:intergenic
GGGCATAGTCTTGCCAGCTC+AGG 0.520862 1_4:-2453381 None:intergenic
AGGGCATAGCTCTAGACCTC+TGG 0.522733 1_4:+2452714 Msa0143510:CDS
CTCTCTGCTTCCGAGCATCC+GGG 0.523316 1_4:-2453401 None:intergenic
CATTGAAATTAGGGTTTGAA+GGG 0.523853 1_4:+2449323 Msa0143510:five_prime_UTR
TAATCAAAATAAGGAGGATG+GGG 0.524367 1_4:+2453785 Msa0143510:CDS
CTGCGCCGAACCATTGGAAT+GGG 0.524909 1_4:+2449380 Msa0143510:CDS
CCGACGTAAACGTGCGGCCA+TGG 0.525256 1_4:-2452809 None:intergenic
GAATTAGCAAAACTTGATGC+TGG 0.526095 1_4:-2452976 None:intergenic
CAAGTACAGCAAGCTGGCAT+GGG 0.527223 1_4:+2454159 Msa0143510:three_prime_UTR
AGCATTAGCAGTCTCCAGAC+TGG 0.530094 1_4:-2452548 None:intergenic
AACATAAGACTAAGCTTGGT+GGG 0.530293 1_4:+2453733 Msa0143510:CDS
GAGGTGAGAGAAGGGAAGGT+TGG 0.531087 1_4:+2451109 Msa0143510:CDS
GAAGTTGGAGGTGCTATCAA+AGG 0.531226 1_4:+2453644 Msa0143510:CDS
AAGGGAAGGTTGGACCGTAC+TGG 0.531331 1_4:+2451119 Msa0143510:CDS
AGTCAACATAAGACTAAGCT+TGG 0.534231 1_4:+2453729 Msa0143510:CDS
AATGTCGACAAGAAAGGTAA+AGG 0.536933 1_4:+2453519 Msa0143510:CDS
GCAGTAGCTAATGATTCAAA+CGG 0.538134 1_4:-2452655 None:intergenic
GCAGTTTGTGTTTGGAGGGA+AGG 0.538351 1_4:+2451332 Msa0143510:CDS
CTCGTTGAAAACAACCCTGT+TGG 0.539026 1_4:+2453102 Msa0143510:CDS
AAATCATCCCATTCAGCCAA+TGG 0.539617 1_4:-2454211 None:intergenic
TAATCTCATCTTTGTTACCA+AGG 0.539655 1_4:+2449506 Msa0143510:CDS
AATCGTTCGTGATTTGATCT+GGG 0.540574 1_4:+2449300 Msa0143510:five_prime_UTR
TTCTCTCACCTCAGACGGCA+GGG 0.540888 1_4:-2451098 None:intergenic
CACTTCTGATCCTGGAACAA+CGG 0.541415 1_4:+2453908 Msa0143510:CDS
TACGAGGTGTTTGGCGAAAG+GGG 0.542527 1_4:+2453976 Msa0143510:CDS
ATCAGCGCCGTGGAAGAGGC+CGG 0.543191 1_4:+2452476 Msa0143510:CDS
TATGTGCAGTTTGTGTTTGG+AGG 0.543683 1_4:+2451327 Msa0143510:CDS
ATCAACTTCAAGATACCGTC+AGG 0.546666 1_4:+2452687 Msa0143510:CDS
GGGCAGACTGAAACTTCAAA+TGG 0.546857 1_4:+2453753 Msa0143510:CDS
CTGCCGTCTGAGGTGAGAGA+AGG 0.547053 1_4:+2451100 Msa0143510:CDS
ATCGAGGAGCAACAAAATGA+TGG 0.547275 1_4:+2451235 Msa0143510:CDS
TAGCCTTGATCATCTTGTAA+TGG 0.548155 1_4:-2451180 None:intergenic
GATAGATACTGATGCATATG+TGG 0.548437 1_4:+2453323 Msa0143510:CDS
TGAGCTGGCAAGACTATGCC+CGG 0.549756 1_4:+2453383 Msa0143510:CDS
TGTGGAAAATAAATAGTAGG+AGG 0.550491 1_4:+2449112 Msa0143510:five_prime_UTR
GAAATGTCCGGCCTCTTCCA+CGG 0.552472 1_4:-2452483 None:intergenic
AGACATAATGCTACGGAACA+TGG 0.555987 1_4:+2452234 Msa0143510:CDS
GTGTCCTTCGATGGACCAGC+AGG 0.556123 1_4:-2453036 None:intergenic
AGATTTCAAGTACAGCAAGC+TGG 0.556264 1_4:+2454153 Msa0143510:three_prime_UTR
TGCACATATGCAACTTATGA+CGG 0.557493 1_4:-2451312 None:intergenic
TAGCCAGCCTCCGCTGAATG+TGG 0.558724 1_4:+2453185 Msa0143510:CDS
GGTGCTTATCGCACCGACAA+AGG 0.559739 1_4:+2453666 Msa0143510:CDS
CAGCGCTAGCACCCATCGCA+AGG 0.559993 1_4:+2453491 Msa0143510:CDS
AAGGGAAGAAGAAGAAGACA+TGG 0.562550 1_4:+2449341 Msa0143510:exon
CATCAGTATCTATCGTGCCT+TGG 0.562624 1_4:-2453314 None:intergenic
AGGCTCTTGGAGATTATACA+AGG 0.562636 1_4:+2451056 Msa0143510:intron
TTTCGCCAAACACCTCGTAC+AGG 0.565462 1_4:-2453972 None:intergenic
ACTGTACACACACATGTCTA+CGG 0.565907 1_4:+2451615 Msa0143510:CDS
GTGGAAAATAAATAGTAGGA+GGG 0.567167 1_4:+2449113 Msa0143510:five_prime_UTR
ACATTTCTTATGTGAAGATG+AGG 0.568216 1_4:+2451951 Msa0143510:CDS
TTCTAGATCTTGAAAACTCA+AGG 0.570577 1_4:+2453883 Msa0143510:CDS
TGCCGTCTGAGGTGAGAGAA+GGG 0.571295 1_4:+2451101 Msa0143510:CDS
AGATGATCAAGGCTATGTGC+AGG 0.572429 1_4:+2451188 Msa0143510:CDS
GATGGAAGTGAGAGTGAGAG+AGG 0.573018 1_4:+2451532 Msa0143510:CDS
TATAGTATTCAAATTGTCCC+GGG 0.574326 1_4:-2451774 None:intergenic
GCTGCACATAGAACTGCTCA+TGG 0.574984 1_4:+2453006 Msa0143510:CDS
GCTTATGTGTTGATTCAACT+GGG 0.578614 1_4:-2451491 None:intergenic
AAGTTGGAGGTGCTATCAAA+GGG 0.579069 1_4:+2453645 Msa0143510:CDS
TAGGAATATAGGGCAGCTGA+AGG 0.579349 1_4:+2451276 Msa0143510:CDS
CTTCCCCTGATTCTGCTCTG+TGG 0.579349 1_4:+2454013 Msa0143510:exon
AAAGCCACAGAGCAGAATCA+GGG 0.580520 1_4:-2454017 None:intergenic
TCGAAGGACACACGTGACAA+TGG 0.581101 1_4:+2453048 Msa0143510:CDS
CAACATAAGACTAAGCTTGG+TGG 0.581293 1_4:+2453732 Msa0143510:CDS
GAAACGAAGACGAGCGACGC+AGG 0.581657 1_4:-2449442 None:intergenic
GGAAGTGAGAGTGAGAGAGG+TGG 0.582135 1_4:+2451535 Msa0143510:CDS
GGGCCAATTGCTTATGATGA+CGG 0.583706 1_4:+2452604 Msa0143510:CDS
GCTCATGGAAAACTACCTGC+TGG 0.585320 1_4:+2453021 Msa0143510:CDS
TCAAGTGTTCATATGAAAGT+GGG 0.586006 1_4:+2454258 Msa0143510:three_prime_UTR
CCATTGGAATGGGTTGCGTA+CGG 0.587419 1_4:+2449390 Msa0143510:CDS
TTCCCTTCTCTCACCTCAGA+CGG 0.588436 1_4:-2451103 None:intergenic
ACGAAGACGAGCGACGCAGG+TGG 0.591019 1_4:-2449439 None:intergenic
ACGAGGTGTTTGGCGAAAGG+GGG 0.591849 1_4:+2453977 Msa0143510:CDS
CGAGGTGTTTGGCGAAAGGG+GGG 0.592185 1_4:+2453978 Msa0143510:CDS
ATGATAGAATTCATGTCGGT+TGG 0.593233 1_4:+2454378 Msa0143510:three_prime_UTR
CTGGCCAGGAAGTGGAGGAA+AGG 0.594675 1_4:-2452746 None:intergenic
TCCACGACTTTGTACAGACC+AGG 0.595043 1_4:-2452872 None:intergenic
TGTCTATATCGAAAACTAGT+CGG 0.595511 1_4:-2452439 None:intergenic
AGCTATGCCCTAAGGCCTGA+CGG 0.595861 1_4:-2452702 None:intergenic
ACAGGTGACTCCGACGTGGA+TGG 0.598357 1_4:+2451514 Msa0143510:CDS
AAAATGCATTCATATCCTCA+TGG 0.599319 1_4:-2451144 None:intergenic
AAGTTCCTCAGAGTGCGCCT+TGG 0.601135 1_4:+2453840 Msa0143510:CDS
ACAAAGCAAAACAGTACACT+TGG 0.601552 1_4:-2454283 None:intergenic
AGGTCTAGAGCTATGCCCTA+AGG 0.601783 1_4:-2452710 None:intergenic
GTCTGAGGTGAGAGAAGGGA+AGG 0.602958 1_4:+2451105 Msa0143510:CDS
AACACTTTCCAAGAAAATGA+CGG 0.610939 1_4:+2453459 Msa0143510:CDS
AAGACGTGGAGCGGAAGGGT+CGG 0.611141 1_4:-2449212 None:intergenic
CCGTACGCAACCCATTCCAA+TGG 0.611857 1_4:-2449390 None:intergenic
GACATAGAGACATAATGCTA+CGG 0.612845 1_4:+2452227 Msa0143510:intron
GCCTGGTCTGTACAAAGTCG+TGG 0.614242 1_4:+2452871 Msa0143510:CDS
CGGACCTTGTTTGCATCGCG+AGG 0.615298 1_4:+2449410 Msa0143510:CDS
AACATGGAGGGCGTATGTCA+CGG 0.615404 1_4:+2452250 Msa0143510:CDS
GGACCATTACAAGATGATCA+AGG 0.615538 1_4:+2451177 Msa0143510:CDS
ATGTGCAGTTTGTGTTTGGA+GGG 0.615677 1_4:+2451328 Msa0143510:CDS
GCCGCACGTTTACGTCGGCA+TGG 0.617464 1_4:+2452814 Msa0143510:CDS
TTGAATCAACACATAAGCAC+AGG 0.617791 1_4:+2451496 Msa0143510:CDS
GAATATTTATAAAACGAACA+TGG 0.620125 1_4:+2454433 Msa0143510:three_prime_UTR
CGTTGTTCCAGGATCAGAAG+TGG 0.622859 1_4:-2453907 None:intergenic
AGGTATCTAGTTCTCTCGTG+TGG 0.622875 1_4:+2449094 None:intergenic
ATGATGGTTCAAGGCGACAA+AGG 0.623404 1_4:+2451251 Msa0143510:CDS
AAGTCCAAACACGAGTCTGA+AGG 0.624220 1_4:+2452772 Msa0143510:CDS
AAGCCACAGAGCAGAATCAG+GGG 0.627092 1_4:-2454016 None:intergenic
TTCATTGTCCCCATAAAATG+GGG 0.627402 1_4:-2451593 None:intergenic
CATTACTTGAAGTTGGCTCA+CGG 0.627438 1_4:-2452582 None:intergenic
ATCGAAGACGTGGAGCGGAA+GGG 0.628788 1_4:-2449216 None:intergenic
ACTACCTGCTGGTCCATCGA+AGG 0.630114 1_4:+2453032 Msa0143510:CDS
ACCTTCAGAAGAGAAGTTGG+AGG 0.630190 1_4:+2453632 Msa0143510:CDS
CACTTTCCAAGAAAATGACG+GGG 0.631121 1_4:+2453461 Msa0143510:CDS
TTTATCTAATCAAAATAAGG+AGG 0.631516 1_4:+2453779 Msa0143510:CDS
CAGAAATTGAAACTCCAACA+GGG 0.633314 1_4:-2453116 None:intergenic
GTTCTGCAAAATTCACACAT+AGG 0.633688 1_4:-2451571 None:intergenic
CAGTGAATGCGACAAGATCG+AGG 0.637792 1_4:+2451219 Msa0143510:CDS
ATACTTGTCATATATGCCAA+AGG 0.640017 1_4:+2451644 Msa0143510:CDS
ACGATTGTTATTGCAATTAG+GGG 0.641201 1_4:-2449283 None:intergenic
TCAATGATTGAGCATATGCG+TGG 0.644537 1_4:+2454459 Msa0143510:three_prime_UTR
GGAGTTGGGCTGCCTGTACG+AGG 0.647685 1_4:+2453960 Msa0143510:CDS
TGATTCAAACGGATTAACGA+TGG 0.648440 1_4:-2452644 None:intergenic
ACTTGTGCCGCAGAAACTGG+AGG 0.648801 1_4:-2453144 None:intergenic
TGAACATTCTCCACATTCAG+CGG 0.650353 1_4:-2453195 None:intergenic
AGGAATATAGGGCAGCTGAA+GGG 0.651781 1_4:+2451277 Msa0143510:CDS
CATCACCAAGGCGCACTCTG+AGG 0.652241 1_4:-2453845 None:intergenic
ATATCCTCATGGTACCAGTA+CGG 0.661958 1_4:-2451133 None:intergenic
TAAGAACTATGATGACCTTG+AGG 0.662578 1_4:+2451795 Msa0143510:CDS
ATATCTGCTCAATATCGCCA+AGG 0.662686 1_4:+2453297 Msa0143510:CDS
TTTAATTGCAGGCAGCACCC+GGG 0.666612 1_4:+2451757 Msa0143510:intron
CCGAAGCAGAACCATCACCA+AGG 0.667674 1_4:-2453857 None:intergenic
ACATTCTCCACATTCAGCGG+AGG 0.667936 1_4:-2453192 None:intergenic
CTGAATGATAGAATTCATGT+CGG 0.671549 1_4:+2454374 Msa0143510:three_prime_UTR
GTAAGTCATTAGATGTTAGG+CGG 0.674875 1_4:+2453541 Msa0143510:CDS
GGAAAGGAAGAGTCTACCAG+AGG 0.674976 1_4:-2452730 None:intergenic
AATGAACAGGATCAGCGCCG+TGG 0.675594 1_4:+2452466 Msa0143510:CDS
CCATGGCCGCACGTTTACGT+CGG 0.678172 1_4:+2452809 Msa0143510:CDS
ATGAAGACAGTAATTAACAG+TGG 0.678648 1_4:+2452949 Msa0143510:CDS
ATAATGCTACGGAACATGGA+GGG 0.682834 1_4:+2452238 Msa0143510:CDS
GCTATCTGCTAATCTCTCAG+TGG 0.687825 1_4:-2453571 None:intergenic
CATAATGCTACGGAACATGG+AGG 0.689083 1_4:+2452237 Msa0143510:CDS
AGGTTCATCTAGCAATACCA+TGG 0.693071 1_4:+2452792 Msa0143510:CDS
GGCTCTTGGAGATTATACAA+GGG 0.699064 1_4:+2451057 Msa0143510:intron
AAGCACAGGTGACTCCGACG+TGG 0.705911 1_4:+2451510 Msa0143510:CDS
GCCATGCCGACGTAAACGTG+CGG 0.707625 1_4:-2452815 None:intergenic
AATCAAAATAAGGAGGATGG+GGG 0.708920 1_4:+2453786 Msa0143510:CDS
ACTCTCACTTCCATCCACGT+CGG 0.716442 1_4:-2451524 None:intergenic
ACATATGCAACTTATGACGG+TGG 0.726710 1_4:-2451309 None:intergenic
TGGACCGTACTGGTACCATG+AGG 0.780655 1_4:+2451129 Msa0143510:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CCATTTTAAAAAAATTATTA+TGG - chr1_4:2449760-2449779 None:intergenic 10.0%
!!! CCATAATAATTTTTTTAAAA+TGG + chr1_4:2449757-2449776 Msa0143510:intron 10.0%
!!! GAAGTTAAATATTTTCTTTA+CGG + chr1_4:2450728-2450747 Msa0143510:intron 15.0%
!!! TATTTTTTGAATGACAATTT+TGG + chr1_4:2451387-2451406 Msa0143510:intron 15.0%
!! TTGAAAAACAATAAATTTCT+TGG - chr1_4:2451986-2452005 None:intergenic 15.0%
!!! AATTTTTAATTTACCTTTGT+CGG - chr1_4:2453682-2453701 None:intergenic 15.0%
!!! TTAAAGAGAACGTTAAATTT+TGG + chr1_4:2450648-2450667 Msa0143510:intron 20.0%
!! ATAAAAAAACATCAATAGCA+GGG + chr1_4:2450962-2450981 Msa0143510:intron 20.0%
!!! AAGGTGAAATATTTATGTTT+TGG + chr1_4:2451355-2451374 Msa0143510:intron 20.0%
!! ATTGTCATTCAAAAAATACA+TGG - chr1_4:2451385-2451404 None:intergenic 20.0%
!! AATGTATCTGTTATTAATTC+TGG + chr1_4:2452844-2452863 Msa0143510:CDS 20.0%
!! CAGTTTATCTAATCAAAATA+AGG + chr1_4:2453776-2453795 Msa0143510:CDS 20.0%
!! TTTATCTAATCAAAATAAGG+AGG + chr1_4:2453779-2453798 Msa0143510:CDS 20.0%
!!! AAAGAATTGAATTTTTGCTT+AGG + chr1_4:2454098-2454117 Msa0143510:three_prime_UTR 20.0%
!! GAATATTTATAAAACGAACA+TGG + chr1_4:2454433-2454452 Msa0143510:three_prime_UTR 20.0%
! GAAGAATGAATGAATTTCTA+GGG - chr1_4:2449264-2449283 None:intergenic 25.0%
!! AACGATTGTTATTGCAATTA+GGG - chr1_4:2449287-2449306 None:intergenic 25.0%
! AACAAAGATGAGATTACATT+CGG - chr1_4:2449502-2449521 None:intergenic 25.0%
! ACAGACACAAAATAATTTCA+TGG - chr1_4:2449566-2449585 None:intergenic 25.0%
! ATTCTAAGTGGTTAAATTCA+GGG - chr1_4:2449634-2449653 None:intergenic 25.0%
! TTGAAAACTAAAGTTAAGAC+GGG - chr1_4:2449695-2449714 None:intergenic 25.0%
! GTTGAAAACTAAAGTTAAGA+CGG - chr1_4:2449696-2449715 None:intergenic 25.0%
!!! TGGTTCATACTTAATTTGTT+AGG + chr1_4:2450132-2450151 Msa0143510:intron 25.0%
!!! GGTTCATACTTAATTTGTTA+GGG + chr1_4:2450133-2450152 Msa0143510:intron 25.0%
!!! TTTTTTGATGTGAAAACAAG+AGG - chr1_4:2450260-2450279 None:intergenic 25.0%
!! AACTAAAAGTCTAAGCTTTT+TGG - chr1_4:2450308-2450327 None:intergenic 25.0%
! TAAAATATGATCTGTGTCAA+TGG + chr1_4:2450424-2450443 Msa0143510:intron 25.0%
! GATAAAAAAACATCAATAGC+AGG + chr1_4:2450961-2450980 Msa0143510:intron 25.0%
!!! ATGTGGTTGATATTCAATTT+TGG + chr1_4:2451022-2451041 Msa0143510:intron 25.0%
!! ATTAGCTTAATTGTTACCTT+TGG - chr1_4:2451663-2451682 None:intergenic 25.0%
! TTATAGTATTCAAATTGTCC+CGG - chr1_4:2451778-2451797 None:intergenic 25.0%
! AAACAATAAATTTCTTGGCA+AGG - chr1_4:2451981-2452000 None:intergenic 25.0%
!! TTCTTCATCTTTTCTGTTAA+TGG + chr1_4:2452061-2452080 Msa0143510:intron 25.0%
! CTGTTAATGGTTTATTTGAA+AGG + chr1_4:2452074-2452093 Msa0143510:intron 25.0%
! ATGGAAGTAAATATTGTCTT+TGG - chr1_4:2452367-2452386 None:intergenic 25.0%
! ATATAGACACAATAATGAAC+AGG + chr1_4:2452453-2452472 Msa0143510:CDS 25.0%
! AATGGTAACAATAATGATTC+TGG + chr1_4:2453939-2453958 Msa0143510:CDS 25.0%
!!! GAATTTTTGGATTATACATG+CGG + chr1_4:2454481-2454500 Msa0143510:three_prime_UTR 25.0%
TCGTGTGGAAAATAAATAGT+AGG + chr1_4:2449109-2449128 Msa0143510:five_prime_UTR 30.0%
TGTGGAAAATAAATAGTAGG+AGG + chr1_4:2449112-2449131 Msa0143510:five_prime_UTR 30.0%
GTGGAAAATAAATAGTAGGA+GGG + chr1_4:2449113-2449132 Msa0143510:five_prime_UTR 30.0%
AAATAAATAGTAGGAGGGAT+TGG + chr1_4:2449118-2449137 Msa0143510:five_prime_UTR 30.0%
AATAAATAGTAGGAGGGATT+GGG + chr1_4:2449119-2449138 Msa0143510:five_prime_UTR 30.0%
GGAAGAATGAATGAATTTCT+AGG - chr1_4:2449265-2449284 None:intergenic 30.0%
! ACGATTGTTATTGCAATTAG+GGG - chr1_4:2449286-2449305 None:intergenic 30.0%
! GAACGATTGTTATTGCAATT+AGG - chr1_4:2449288-2449307 None:intergenic 30.0%
CATTGAAATTAGGGTTTGAA+GGG + chr1_4:2449323-2449342 Msa0143510:five_prime_UTR 30.0%
TAATCTCATCTTTGTTACCA+AGG + chr1_4:2449506-2449525 Msa0143510:CDS 30.0%
GATTCTAAGTGGTTAAATTC+AGG - chr1_4:2449635-2449654 None:intergenic 30.0%
AGACCTATGTTTCTTATTGA+AGG - chr1_4:2449834-2449853 None:intergenic 30.0%
CAATATTCATGCTAGGAATT+AGG - chr1_4:2449893-2449912 None:intergenic 30.0%
CTAATTCCTAGCATGAATAT+TGG + chr1_4:2449891-2449910 Msa0143510:intron 30.0%
GAACTGATGTAATGAAGTTT+AGG + chr1_4:2449961-2449980 Msa0143510:intron 30.0%
GAACTAATTTATCCATGACT+TGG + chr1_4:2450112-2450131 Msa0143510:intron 30.0%
ATTAAGTATGAACCAAGTCA+TGG - chr1_4:2450127-2450146 None:intergenic 30.0%
!! TTATAACCTGTTTGTTTCTG+TGG + chr1_4:2450167-2450186 Msa0143510:intron 30.0%
AAAAAAGCAATTTAGACGTG+CGG + chr1_4:2450274-2450293 Msa0143510:intron 30.0%
TTGTATCTGTTGCACAAATA+TGG + chr1_4:2450356-2450375 Msa0143510:intron 30.0%
TTGCAAACTAAAGTTAAGAC+AGG - chr1_4:2450498-2450517 None:intergenic 30.0%
GAATAATTTATATACAGCCC+AGG - chr1_4:2450525-2450544 None:intergenic 30.0%
! TTTGTTGCTATCTTTTGATG+TGG + chr1_4:2451005-2451024 Msa0143510:intron 30.0%
AAAATGCATTCATATCCTCA+TGG - chr1_4:2451147-2451166 None:intergenic 30.0%
GACAAAGGTTTAGGAATATA+GGG + chr1_4:2451266-2451285 Msa0143510:CDS 30.0%
TACCATCATTTCTATGACAT+AGG + chr1_4:2451435-2451454 Msa0143510:intron 30.0%
ATACTTGTCATATATGCCAA+AGG + chr1_4:2451644-2451663 Msa0143510:CDS 30.0%
TAATCAATCATGTGCTCAAT+AGG + chr1_4:2451679-2451698 Msa0143510:intron 30.0%
!! CAATAGGTGTTTCTTTGTTT+TGG + chr1_4:2451695-2451714 Msa0143510:intron 30.0%
TATATCTGTGCTTTAATTGC+AGG + chr1_4:2451746-2451765 Msa0143510:intron 30.0%
TATAGTATTCAAATTGTCCC+GGG - chr1_4:2451777-2451796 None:intergenic 30.0%
GACAAATATTTCTTACCTCA+AGG - chr1_4:2451813-2451832 None:intergenic 30.0%
!!! TCTTTTTTCGTCTGAAAGTA+AGG + chr1_4:2451845-2451864 Msa0143510:intron 30.0%
TTGACCTGATAGTATTTGTA+TGG + chr1_4:2451891-2451910 Msa0143510:intron 30.0%
TGACCTGATAGTATTTGTAT+GGG + chr1_4:2451892-2451911 Msa0143510:intron 30.0%
CACATAAGAAATGTTGTTGT+CGG - chr1_4:2451945-2451964 None:intergenic 30.0%
ACATTTCTTATGTGAAGATG+AGG + chr1_4:2451951-2451970 Msa0143510:CDS 30.0%
AACAGAAAAGATGAAGAAAC+AGG - chr1_4:2452059-2452078 None:intergenic 30.0%
ATGTCTCTATGTCATAAACA+AGG - chr1_4:2452220-2452239 None:intergenic 30.0%
AATGAAAGGTAACTTCTGTA+AGG - chr1_4:2452404-2452423 None:intergenic 30.0%
TGTCTATATCGAAAACTAGT+CGG - chr1_4:2452442-2452461 None:intergenic 30.0%
! TTCTGAAAATCAACTTTCCA+TGG + chr1_4:2452516-2452535 Msa0143510:CDS 30.0%
! TTATTAATTCTGGAAATGCC+TGG + chr1_4:2452854-2452873 Msa0143510:CDS 30.0%
ACAACAAAGTCTCAAAATTC+TGG + chr1_4:2452922-2452941 Msa0143510:CDS 30.0%
TGTTAATTACTGTCTTCATC+TGG - chr1_4:2452948-2452967 None:intergenic 30.0%
ATGAAGACAGTAATTAACAG+TGG + chr1_4:2452949-2452968 Msa0143510:CDS 30.0%
AACACTTTCCAAGAAAATGA+CGG + chr1_4:2453459-2453478 Msa0143510:CDS 30.0%
AAGGTAAGTCATTAGATGTT+AGG + chr1_4:2453538-2453557 Msa0143510:CDS 30.0%
TCTAATCAAAATAAGGAGGA+TGG + chr1_4:2453783-2453802 Msa0143510:CDS 30.0%
CTAATCAAAATAAGGAGGAT+GGG + chr1_4:2453784-2453803 Msa0143510:CDS 30.0%
TAATCAAAATAAGGAGGATG+GGG + chr1_4:2453785-2453804 Msa0143510:CDS 30.0%
!! TGAGTTTTCAAGATCTAGAA+GGG - chr1_4:2453883-2453902 None:intergenic 30.0%
!! TTGAGTTTTCAAGATCTAGA+AGG - chr1_4:2453884-2453903 None:intergenic 30.0%
TTCTAGATCTTGAAAACTCA+AGG + chr1_4:2453883-2453902 Msa0143510:CDS 30.0%
!! AACAATAATGATTCTGGAGT+TGG + chr1_4:2453945-2453964 Msa0143510:CDS 30.0%
!! ACAATAATGATTCTGGAGTT+GGG + chr1_4:2453946-2453965 Msa0143510:CDS 30.0%
TTGTAGAAACCACAGTTAAA+AGG + chr1_4:2454065-2454084 Msa0143510:three_prime_UTR 30.0%
TGTAGAAACCACAGTTAAAA+GGG + chr1_4:2454066-2454085 Msa0143510:three_prime_UTR 30.0%
! GAATTGAATTTTTGCTTAGG+AGG + chr1_4:2454101-2454120 Msa0143510:three_prime_UTR 30.0%
!!! GAATTTTGTTGTTGTGTTGA+AGG + chr1_4:2454181-2454200 Msa0143510:three_prime_UTR 30.0%
TTCAAGTGTTCATATGAAAG+TGG + chr1_4:2454257-2454276 Msa0143510:three_prime_UTR 30.0%
TCAAGTGTTCATATGAAAGT+GGG + chr1_4:2454258-2454277 Msa0143510:three_prime_UTR 30.0%
CTGAATGATAGAATTCATGT+CGG + chr1_4:2454374-2454393 Msa0143510:three_prime_UTR 30.0%
ATTTCTCTAGTACTCATATC+AGG - chr1_4:2454407-2454426 None:intergenic 30.0%
TGATTGAAAAATCGAAGACG+TGG - chr1_4:2449229-2449248 None:intergenic 35.0%
AATCGTTCGTGATTTGATCT+GGG + chr1_4:2449300-2449319 Msa0143510:five_prime_UTR 35.0%
!! TTGATCTGGGCATTGAAATT+AGG + chr1_4:2449313-2449332 Msa0143510:five_prime_UTR 35.0%
!! TGATCTGGGCATTGAAATTA+GGG + chr1_4:2449314-2449333 Msa0143510:five_prime_UTR 35.0%
GCATTGAAATTAGGGTTTGA+AGG + chr1_4:2449322-2449341 Msa0143510:five_prime_UTR 35.0%
! TGGAATCGATAAGAAGCATA+GGG - chr1_4:2449546-2449565 None:intergenic 35.0%
! ATGGAATCGATAAGAAGCAT+AGG - chr1_4:2449547-2449566 None:intergenic 35.0%
TGTGTCTGTTGCAACATATA+TGG + chr1_4:2449577-2449596 Msa0143510:intron 35.0%
!! TAAAGTTAAGACGGGTTGTT+GGG - chr1_4:2449687-2449706 None:intergenic 35.0%
TCTCTTCCAATATTCATGCT+AGG - chr1_4:2449900-2449919 None:intergenic 35.0%
TACTCACAAACTAACTGTCA+AGG - chr1_4:2450031-2450050 None:intergenic 35.0%
AGTTTGTGAGTAATGCATTC+AGG + chr1_4:2450039-2450058 Msa0143510:intron 35.0%
TATTTGCCACAGAAACAAAC+AGG - chr1_4:2450176-2450195 None:intergenic 35.0%
!! TGTTTGTTTCTGTGGCAAAT+AGG + chr1_4:2450175-2450194 Msa0143510:intron 35.0%
CTGTGTTATATGCTGAAAAG+AGG + chr1_4:2450467-2450486 Msa0143510:intron 35.0%
TCGTTAAATTTCCCCTGTAA+AGG + chr1_4:2450560-2450579 Msa0143510:intron 35.0%
AGCACAAATGCAGAACAAAA+GGG - chr1_4:2450614-2450633 None:intergenic 35.0%
AAGCACAAATGCAGAACAAA+AGG - chr1_4:2450615-2450634 None:intergenic 35.0%
GAACTATTCCATTTGTGACT+TGG + chr1_4:2450826-2450845 Msa0143510:intron 35.0%
AGAAAAGACGTAGTCAAACT+TGG + chr1_4:2450860-2450879 Msa0143510:intron 35.0%
GTTCTCATTCTCACTTTGTT+AGG + chr1_4:2450891-2450910 Msa0143510:intron 35.0%
!! CAATTTTGGTGTATACTGTC+AGG + chr1_4:2451036-2451055 Msa0143510:intron 35.0%
! TAGCCTTGATCATCTTGTAA+TGG - chr1_4:2451183-2451202 None:intergenic 35.0%
AGCAACAAAATGATGGTTCA+AGG + chr1_4:2451242-2451261 Msa0143510:CDS 35.0%
CGACAAAGGTTTAGGAATAT+AGG + chr1_4:2451265-2451284 Msa0143510:CDS 35.0%
TGCACATATGCAACTTATGA+CGG - chr1_4:2451315-2451334 None:intergenic 35.0%
CACCTATGTCATAGAAATGA+TGG - chr1_4:2451440-2451459 None:intergenic 35.0%
!! GCTTATGTGTTGATTCAACT+GGG - chr1_4:2451494-2451513 None:intergenic 35.0%
!! TGCTTATGTGTTGATTCAAC+TGG - chr1_4:2451495-2451514 None:intergenic 35.0%
TTGAATCAACACATAAGCAC+AGG + chr1_4:2451496-2451515 Msa0143510:CDS 35.0%
GTTCTGCAAAATTCACACAT+AGG - chr1_4:2451574-2451593 None:intergenic 35.0%
! TTTTGCAGAACCCCATTTTA+TGG + chr1_4:2451583-2451602 Msa0143510:CDS 35.0%
! TTTGCAGAACCCCATTTTAT+GGG + chr1_4:2451584-2451603 Msa0143510:CDS 35.0%
TTCATTGTCCCCATAAAATG+GGG - chr1_4:2451596-2451615 None:intergenic 35.0%
GTTCATTGTCCCCATAAAAT+GGG - chr1_4:2451597-2451616 None:intergenic 35.0%
AGTTCATTGTCCCCATAAAA+TGG - chr1_4:2451598-2451617 None:intergenic 35.0%
TAAGAACTATGATGACCTTG+AGG + chr1_4:2451795-2451814 Msa0143510:CDS 35.0%
TTGCCCATACAAATACTATC+AGG - chr1_4:2451898-2451917 None:intergenic 35.0%
TCAATCTGAATCAGAGATGA+AGG + chr1_4:2452002-2452021 Msa0143510:CDS 35.0%
ATTTCCCATGCATGTTCATT+TGG + chr1_4:2452129-2452148 Msa0143510:intron 35.0%
GACATAGAGACATAATGCTA+CGG + chr1_4:2452227-2452246 Msa0143510:intron 35.0%
! TAAGGTACTAAGAAGGATCA+TGG - chr1_4:2452386-2452405 None:intergenic 35.0%
! ACTTCTGTAAGGTACTAAGA+AGG - chr1_4:2452393-2452412 None:intergenic 35.0%
ATCTGTGAGGAAACAATGAA+AGG - chr1_4:2452418-2452437 None:intergenic 35.0%
!! TGATTCAAACGGATTAACGA+TGG - chr1_4:2452647-2452666 None:intergenic 35.0%
GCAGTAGCTAATGATTCAAA+CGG - chr1_4:2452658-2452677 None:intergenic 35.0%
! GTTGTCTTTTTAGATTGCGA+AGG - chr1_4:2452907-2452926 None:intergenic 35.0%
GAATTAGCAAAACTTGATGC+TGG - chr1_4:2452979-2452998 None:intergenic 35.0%
CAGAAATTGAAACTCCAACA+GGG - chr1_4:2453119-2453138 None:intergenic 35.0%
TCAGAAATTGAAACTCCAAC+AGG - chr1_4:2453120-2453139 None:intergenic 35.0%
! ACTACGAATCTTTTCAACCA+AGG - chr1_4:2453235-2453254 None:intergenic 35.0%
GATAGATACTGATGCATATG+TGG + chr1_4:2453323-2453342 Msa0143510:CDS 35.0%
ACACTTTCCAAGAAAATGAC+GGG + chr1_4:2453460-2453479 Msa0143510:CDS 35.0%
GACAAAAATGTCGACAAGAA+AGG + chr1_4:2453513-2453532 Msa0143510:CDS 35.0%
AATGTCGACAAGAAAGGTAA+AGG + chr1_4:2453519-2453538 Msa0143510:CDS 35.0%
GTAAGTCATTAGATGTTAGG+CGG + chr1_4:2453541-2453560 Msa0143510:CDS 35.0%
TAAACCTTCAGAAGAGAAGT+TGG + chr1_4:2453629-2453648 Msa0143510:CDS 35.0%
! CTAGAGTTTGTTTGAATCTG+CGG - chr1_4:2453708-2453727 None:intergenic 35.0%
AGTCAACATAAGACTAAGCT+TGG + chr1_4:2453729-2453748 Msa0143510:CDS 35.0%
AACATAAGACTAAGCTTGGT+GGG + chr1_4:2453733-2453752 Msa0143510:CDS 35.0%
AATCAAAATAAGGAGGATGG+GGG + chr1_4:2453786-2453805 Msa0143510:CDS 35.0%
AAAATCAGGCACACTTGAAT+TGG + chr1_4:2454041-2454060 Msa0143510:three_prime_UTR 35.0%
!! TGTTCAATCCCTTTTAACTG+TGG - chr1_4:2454077-2454096 None:intergenic 35.0%
CTTAGGAGGTAATCATTTCA+TGG + chr1_4:2454115-2454134 Msa0143510:three_prime_UTR 35.0%
ACAAAGCAAAACAGTACACT+TGG - chr1_4:2454286-2454305 None:intergenic 35.0%
! TGTTTTGCTTTGTACTCAAG+TGG + chr1_4:2454293-2454312 Msa0143510:three_prime_UTR 35.0%
ATGATAGAATTCATGTCGGT+TGG + chr1_4:2454378-2454397 Msa0143510:three_prime_UTR 35.0%
! TTGGGTATGTTTGGTGAAAG+CGG + chr1_4:2449137-2449156 Msa0143510:intron 40.0%
CAATCGTTCGTGATTTGATC+TGG + chr1_4:2449299-2449318 Msa0143510:five_prime_UTR 40.0%
AAGGGAAGAAGAAGAAGACA+TGG + chr1_4:2449341-2449360 Msa0143510:exon 40.0%
! GAATCGATAAGAAGCATAGG+GGG - chr1_4:2449544-2449563 None:intergenic 40.0%
! GGAATCGATAAGAAGCATAG+GGG - chr1_4:2449545-2449564 None:intergenic 40.0%
GACACAGATCAGATTCTAAG+TGG - chr1_4:2449646-2449665 None:intergenic 40.0%
!! CTAAAGTTAAGACGGGTTGT+TGG - chr1_4:2449688-2449707 None:intergenic 40.0%
! ATTCATTGCCATCGCTGTTT+TGG + chr1_4:2449784-2449803 Msa0143510:intron 40.0%
GCGCCTTCAATAAGAAACAT+AGG + chr1_4:2449828-2449847 Msa0143510:intron 40.0%
!! ACTTTAGTTTGCAACTGTCC+TGG + chr1_4:2450504-2450523 Msa0143510:intron 40.0%
!! CTTTAGTTTGCAACTGTCCT+GGG + chr1_4:2450505-2450524 Msa0143510:intron 40.0%
CAAATGCAGAACAAAAGGGT+GGG - chr1_4:2450610-2450629 None:intergenic 40.0%
ACAAATGCAGAACAAAAGGG+TGG - chr1_4:2450611-2450630 None:intergenic 40.0%
CATGTTCACCAAGTCACAAA+TGG - chr1_4:2450837-2450856 None:intergenic 40.0%
!! CATTTGTGACTTGGTGAACA+TGG + chr1_4:2450835-2450854 Msa0143510:intron 40.0%
AGGCTCTTGGAGATTATACA+AGG + chr1_4:2451056-2451075 Msa0143510:intron 40.0%
GGCTCTTGGAGATTATACAA+GGG + chr1_4:2451057-2451076 Msa0143510:intron 40.0%
ATATCCTCATGGTACCAGTA+CGG - chr1_4:2451136-2451155 None:intergenic 40.0%
!! GAATGCATTTTTCGATGACG+TGG + chr1_4:2451156-2451175 Msa0143510:CDS 40.0%
GGACCATTACAAGATGATCA+AGG + chr1_4:2451177-2451196 Msa0143510:CDS 40.0%
ATCGAGGAGCAACAAAATGA+TGG + chr1_4:2451235-2451254 Msa0143510:CDS 40.0%
ACATATGCAACTTATGACGG+TGG - chr1_4:2451312-2451331 None:intergenic 40.0%
GCATATGTGCAGTTTGTGTT+TGG + chr1_4:2451324-2451343 Msa0143510:CDS 40.0%
TATGTGCAGTTTGTGTTTGG+AGG + chr1_4:2451327-2451346 Msa0143510:CDS 40.0%
ATGTGCAGTTTGTGTTTGGA+GGG + chr1_4:2451328-2451347 Msa0143510:CDS 40.0%
!!! AGTGAGAGAGGTGGTTTTAT+GGG + chr1_4:2451544-2451563 Msa0143510:CDS 40.0%
! TTGCAGAACCCCATTTTATG+GGG + chr1_4:2451585-2451604 Msa0143510:CDS 40.0%
ACTGTACACACACATGTCTA+CGG + chr1_4:2451615-2451634 Msa0143510:CDS 40.0%
! GTCTGAAAGTAAGGCTTTGT+CGG + chr1_4:2451854-2451873 Msa0143510:intron 40.0%
AGAAATGTTGTTGTCGGAAG+TGG - chr1_4:2451939-2451958 None:intergenic 40.0%
TGACTGATTACTTACAGCAC+TGG + chr1_4:2452025-2452044 Msa0143510:intron 40.0%
GACTGATTACTTACAGCACT+GGG + chr1_4:2452026-2452045 Msa0143510:intron 40.0%
GCATCCAAATGAACATGCAT+GGG - chr1_4:2452136-2452155 None:intergenic 40.0%
AGCATCCAAATGAACATGCA+TGG - chr1_4:2452137-2452156 None:intergenic 40.0%
AGACATAATGCTACGGAACA+TGG + chr1_4:2452234-2452253 Msa0143510:CDS 40.0%
ATAATGCTACGGAACATGGA+GGG + chr1_4:2452238-2452257 Msa0143510:CDS 40.0%
TGCTCTTCAGGTATGTTCAA+TGG + chr1_4:2452287-2452306 Msa0143510:intron 40.0%
TACCAACAGACATGAGAAGT+GGG - chr1_4:2452331-2452350 None:intergenic 40.0%
ATACCAACAGACATGAGAAG+TGG - chr1_4:2452332-2452351 None:intergenic 40.0%
AAAACTAGTCGGTATCTGTG+AGG - chr1_4:2452431-2452450 None:intergenic 40.0%
AATGATCACGACGAAATGTC+CGG - chr1_4:2452498-2452517 None:intergenic 40.0%
! CATTACTTGAAGTTGGCTCA+CGG - chr1_4:2452585-2452604 None:intergenic 40.0%
GTGAGCCAACTTCAAGTAAT+GGG + chr1_4:2452584-2452603 Msa0143510:CDS 40.0%
ATTGGCCCATTACTTGAAGT+TGG - chr1_4:2452592-2452611 None:intergenic 40.0%
TCTCCGTCATCATAAGCAAT+TGG - chr1_4:2452610-2452629 None:intergenic 40.0%
ATCAACTTCAAGATACCGTC+AGG + chr1_4:2452687-2452706 Msa0143510:CDS 40.0%
AGGTTCATCTAGCAATACCA+TGG + chr1_4:2452792-2452811 Msa0143510:CDS 40.0%
TTAGATTGCGAAGGTTGTAC+AGG - chr1_4:2452898-2452917 None:intergenic 40.0%
! TGATTTTCCTCCAGTTTCTG+CGG + chr1_4:2453137-2453156 Msa0143510:CDS 40.0%
TGAACATTCTCCACATTCAG+CGG - chr1_4:2453198-2453217 None:intergenic 40.0%
! CTTTTCAACCAAGGACTTGT+TGG - chr1_4:2453226-2453245 None:intergenic 40.0%
ATATCTGCTCAATATCGCCA+AGG + chr1_4:2453297-2453316 Msa0143510:CDS 40.0%
!!! CTTTTGGAGTCTTACAATGC+TGG + chr1_4:2453426-2453445 Msa0143510:CDS 40.0%
CACTTTCCAAGAAAATGACG+GGG + chr1_4:2453461-2453480 Msa0143510:CDS 40.0%
!! CATAAACCCCGTCATTTTCT+TGG - chr1_4:2453470-2453489 None:intergenic 40.0%
! CAAGAAAATGACGGGGTTTA+TGG + chr1_4:2453468-2453487 Msa0143510:CDS 40.0%
! GACATTTTTGTCCTTGCGAT+GGG - chr1_4:2453505-2453524 None:intergenic 40.0%
!! AAGTTGGAGGTGCTATCAAA+GGG + chr1_4:2453645-2453664 Msa0143510:CDS 40.0%
CAACATAAGACTAAGCTTGG+TGG + chr1_4:2453732-2453751 Msa0143510:CDS 40.0%
TTTAAACTGTCCGTTGTTCC+AGG - chr1_4:2453921-2453940 None:intergenic 40.0%
GGAACAACGGACAGTTTAAA+TGG + chr1_4:2453921-2453940 Msa0143510:CDS 40.0%
! AGATTTCAAGTACAGCAAGC+TGG + chr1_4:2454153-2454172 Msa0143510:three_prime_UTR 40.0%
TGTTGAAGGCTGAATTCCAT+TGG + chr1_4:2454195-2454214 Msa0143510:three_prime_UTR 40.0%
! CTGAATTCCATTGGCTGAAT+GGG + chr1_4:2454204-2454223 Msa0143510:three_prime_UTR 40.0%
AAATCATCCCATTCAGCCAA+TGG - chr1_4:2454214-2454233 None:intergenic 40.0%
! TTGGCTGAATGGGATGATTT+TGG + chr1_4:2454214-2454233 Msa0143510:three_prime_UTR 40.0%
!! CTGAATGGGATGATTTTGGT+TGG + chr1_4:2454218-2454237 Msa0143510:three_prime_UTR 40.0%
!!! TGGGATGATTTTGGTTGGTT+TGG + chr1_4:2454223-2454242 Msa0143510:three_prime_UTR 40.0%
!!! GGGATGATTTTGGTTGGTTT+GGG + chr1_4:2454224-2454243 Msa0143510:three_prime_UTR 40.0%
!!! GGATGATTTTGGTTGGTTTG+GGG + chr1_4:2454225-2454244 Msa0143510:three_prime_UTR 40.0%
TCAATGATTGAGCATATGCG+TGG + chr1_4:2454459-2454478 Msa0143510:three_prime_UTR 40.0%
! GAGCATATGCGTGGAATTTT+TGG + chr1_4:2454468-2454487 Msa0143510:three_prime_UTR 40.0%
TAGGAGGGATTGGGTATGTT+TGG + chr1_4:2449128-2449147 Msa0143510:intron 45.0%
GAAAAATCGAAGACGTGGAG+CGG - chr1_4:2449224-2449243 None:intergenic 45.0%
! ATAAGAAGCATAGGGGGTAG+GGG - chr1_4:2449538-2449557 None:intergenic 45.0%
! GATAAGAAGCATAGGGGGTA+GGG - chr1_4:2449539-2449558 None:intergenic 45.0%
TGGCAAATAGGCATCAACTG+CGG + chr1_4:2450187-2450206 Msa0143510:intron 45.0%
AGATGATCAAGGCTATGTGC+AGG + chr1_4:2451188-2451207 Msa0143510:CDS 45.0%
ATGATGGTTCAAGGCGACAA+AGG + chr1_4:2451251-2451270 Msa0143510:CDS 45.0%
GTTCAAGGCGACAAAGGTTT+AGG + chr1_4:2451257-2451276 Msa0143510:CDS 45.0%
TAGGAATATAGGGCAGCTGA+AGG + chr1_4:2451276-2451295 Msa0143510:CDS 45.0%
AGGAATATAGGGCAGCTGAA+GGG + chr1_4:2451277-2451296 Msa0143510:CDS 45.0%
TTTGTGTTTGGAGGGAAGGA+AGG + chr1_4:2451336-2451355 Msa0143510:CDS 45.0%
!! GAGTGAGAGAGGTGGTTTTA+TGG + chr1_4:2451543-2451562 Msa0143510:CDS 45.0%
!!! GTGAGAGAGGTGGTTTTATG+GGG + chr1_4:2451545-2451564 Msa0143510:CDS 45.0%
TGCATGGGAAATCATCAAGC+AGG - chr1_4:2452121-2452140 None:intergenic 45.0%
CATAATGCTACGGAACATGG+AGG + chr1_4:2452237-2452256 Msa0143510:CDS 45.0%
AAAGCGTAATGCTGCTCTTC+AGG + chr1_4:2452275-2452294 Msa0143510:CDS 45.0%
AACCCACTTCTCATGTCTGT+TGG + chr1_4:2452326-2452345 Msa0143510:intron 45.0%
CGTGAGCCAACTTCAAGTAA+TGG + chr1_4:2452583-2452602 Msa0143510:CDS 45.0%
GGGCCAATTGCTTATGATGA+CGG + chr1_4:2452604-2452623 Msa0143510:CDS 45.0%
! ACTCGTGTTTGGACTTTTCC+TGG - chr1_4:2452768-2452787 None:intergenic 45.0%
AAGTCCAAACACGAGTCTGA+AGG + chr1_4:2452772-2452791 Msa0143510:CDS 45.0%
TGAACCTTCAGACTCGTGTT+TGG - chr1_4:2452779-2452798 None:intergenic 45.0%
!! GGGTTGTTTTCAACGAGGTT+TGG - chr1_4:2453099-2453118 None:intergenic 45.0%
!! CAACAGGGTTGTTTTCAACG+AGG - chr1_4:2453104-2453123 None:intergenic 45.0%
CTCGTTGAAAACAACCCTGT+TGG + chr1_4:2453102-2453121 Msa0143510:CDS 45.0%
CATCAGTATCTATCGTGCCT+TGG - chr1_4:2453317-2453336 None:intergenic 45.0%
GTTTCATCTTGTACCTGAGC+TGG + chr1_4:2453368-2453387 Msa0143510:CDS 45.0%
! TCGGAAGCAGAGAGAACTTT+TGG + chr1_4:2453410-2453429 Msa0143510:CDS 45.0%
! CGACATTTTTGTCCTTGCGA+TGG - chr1_4:2453506-2453525 None:intergenic 45.0%
GCTATCTGCTAATCTCTCAG+TGG - chr1_4:2453574-2453593 None:intergenic 45.0%
ACCTTCAGAAGAGAAGTTGG+AGG + chr1_4:2453632-2453651 Msa0143510:CDS 45.0%
ACCTCCAACTTCTCTTCTGA+AGG - chr1_4:2453636-2453655 None:intergenic 45.0%
!! GAAGTTGGAGGTGCTATCAA+AGG + chr1_4:2453644-2453663 Msa0143510:CDS 45.0%
GGGCAGACTGAAACTTCAAA+TGG + chr1_4:2453753-2453772 Msa0143510:CDS 45.0%
CACTTCTGATCCTGGAACAA+CGG + chr1_4:2453908-2453927 Msa0143510:CDS 45.0%
AAAGCCACAGAGCAGAATCA+GGG - chr1_4:2454020-2454039 None:intergenic 45.0%
!! GCTCTGTGGCTTTGAAAATC+AGG + chr1_4:2454027-2454046 Msa0143510:three_prime_UTR 45.0%
! GCTGAATTCCATTGGCTGAA+TGG + chr1_4:2454203-2454222 Msa0143510:three_prime_UTR 45.0%
!!! CATTTTAAAAAAATTATTAT+GGG - chr1_4:2449759-2449778 None:intergenic 5.0%
! GGTATGTTTGGTGAAAGCGG+TGG + chr1_4:2449140-2449159 Msa0143510:intron 50.0%
CGCAACCCATTCCAATGGTT+CGG - chr1_4:2449388-2449407 None:intergenic 50.0%
!! CCATTGGAATGGGTTGCGTA+CGG + chr1_4:2449390-2449409 Msa0143510:CDS 50.0%
CAAACCTCGCGATGCAAACA+AGG - chr1_4:2449417-2449436 None:intergenic 50.0%
! CGATAAGAAGCATAGGGGGT+AGG - chr1_4:2449540-2449559 None:intergenic 50.0%
CGATGAATAGCAGCACAGAC+AGG - chr1_4:2449722-2449741 None:intergenic 50.0%
! GTCTGTGCTGCTATTCATCG+CGG + chr1_4:2449722-2449741 Msa0143510:intron 50.0%
!!! TGCCATCGCTGTTTTGGTGT+CGG + chr1_4:2449790-2449809 Msa0143510:intron 50.0%
GTGTCGGACACTGACACATA+AGG + chr1_4:2449806-2449825 Msa0143510:intron 50.0%
AGGCATCAACTGCGGCAAAT+AGG + chr1_4:2450195-2450214 Msa0143510:intron 50.0%
GCAATTTAGACGTGCGGTTG+AGG + chr1_4:2450280-2450299 Msa0143510:intron 50.0%
AAGCGGCAGTAGCCTTTACA+GGG - chr1_4:2450575-2450594 None:intergenic 50.0%
AAAAGGGTGGGCAAGGATGA+GGG - chr1_4:2450598-2450617 None:intergenic 50.0%
GGTGTATACTGTCAGGCTCT+TGG + chr1_4:2451043-2451062 Msa0143510:intron 50.0%
TTCCCTTCTCTCACCTCAGA+CGG - chr1_4:2451106-2451125 None:intergenic 50.0%
CAGTGAATGCGACAAGATCG+AGG + chr1_4:2451219-2451238 Msa0143510:CDS 50.0%
GCAGTTTGTGTTTGGAGGGA+AGG + chr1_4:2451332-2451351 Msa0143510:CDS 50.0%
ACTCTCACTTCCATCCACGT+CGG - chr1_4:2451527-2451546 None:intergenic 50.0%
GATGGAAGTGAGAGTGAGAG+AGG + chr1_4:2451532-2451551 Msa0143510:CDS 50.0%
CTTTAATTGCAGGCAGCACC+CGG + chr1_4:2451756-2451775 Msa0143510:intron 50.0%
TTTAATTGCAGGCAGCACCC+GGG + chr1_4:2451757-2451776 Msa0143510:intron 50.0%
! AACATGGAGGGCGTATGTCA+CGG + chr1_4:2452250-2452269 Msa0143510:CDS 50.0%
!! AGTCTCCAGACTGGCTTCAA+TGG - chr1_4:2452542-2452561 None:intergenic 50.0%
AGCATTAGCAGTCTCCAGAC+TGG - chr1_4:2452551-2452570 None:intergenic 50.0%
TCAAGATACCGTCAGGCCTT+AGG + chr1_4:2452694-2452713 Msa0143510:CDS 50.0%
CAAGATACCGTCAGGCCTTA+GGG + chr1_4:2452695-2452714 Msa0143510:CDS 50.0%
! AGGTCTAGAGCTATGCCCTA+AGG - chr1_4:2452713-2452732 None:intergenic 50.0%
GGAAAGGAAGAGTCTACCAG+AGG - chr1_4:2452733-2452752 None:intergenic 50.0%
TCTTCCTTTCCTCCACTTCC+TGG + chr1_4:2452742-2452761 Msa0143510:CDS 50.0%
! TGTTTGGACTTTTCCTGGCC+AGG - chr1_4:2452763-2452782 None:intergenic 50.0%
TCCACGACTTTGTACAGACC+AGG - chr1_4:2452875-2452894 None:intergenic 50.0%
GCTGCACATAGAACTGCTCA+TGG + chr1_4:2453006-2453025 Msa0143510:CDS 50.0%
GCTCATGGAAAACTACCTGC+TGG + chr1_4:2453021-2453040 Msa0143510:CDS 50.0%
TTGTCACGTGTGTCCTTCGA+TGG - chr1_4:2453048-2453067 None:intergenic 50.0%
TCGAAGGACACACGTGACAA+TGG + chr1_4:2453048-2453067 Msa0143510:CDS 50.0%
ACATTCTCCACATTCAGCGG+AGG - chr1_4:2453195-2453214 None:intergenic 50.0%
TCAGTCTGCCAACAAGTCCT+TGG + chr1_4:2453215-2453234 Msa0143510:CDS 50.0%
CAAAATAAGGAGGATGGGGG+TGG + chr1_4:2453789-2453808 Msa0143510:CDS 50.0%
!! CCTTGGTGATGGTTCTGCTT+CGG + chr1_4:2453857-2453876 Msa0143510:CDS 50.0%
TCAAGGACCACTTCTGATCC+TGG + chr1_4:2453900-2453919 Msa0143510:CDS 50.0%
CGTTGTTCCAGGATCAGAAG+TGG - chr1_4:2453910-2453929 None:intergenic 50.0%
TTTCGCCAAACACCTCGTAC+AGG - chr1_4:2453975-2453994 None:intergenic 50.0%
! TGTACGAGGTGTTTGGCGAA+AGG + chr1_4:2453974-2453993 Msa0143510:CDS 50.0%
! GTACGAGGTGTTTGGCGAAA+GGG + chr1_4:2453975-2453994 Msa0143510:CDS 50.0%
! TACGAGGTGTTTGGCGAAAG+GGG + chr1_4:2453976-2453995 Msa0143510:CDS 50.0%
AAGCCACAGAGCAGAATCAG+GGG - chr1_4:2454019-2454038 None:intergenic 50.0%
CAAAGCCACAGAGCAGAATC+AGG - chr1_4:2454021-2454040 None:intergenic 50.0%
TCAAGTACAGCAAGCTGGCA+TGG + chr1_4:2454158-2454177 Msa0143510:three_prime_UTR 50.0%
CAAGTACAGCAAGCTGGCAT+GGG + chr1_4:2454159-2454178 Msa0143510:three_prime_UTR 50.0%
! TGTTTGGTGAAAGCGGTGGC+TGG + chr1_4:2449144-2449163 Msa0143510:intron 55.0%
ATCGAAGACGTGGAGCGGAA+GGG - chr1_4:2449219-2449238 None:intergenic 55.0%
AATCGAAGACGTGGAGCGGA+AGG - chr1_4:2449220-2449239 None:intergenic 55.0%
TCTGCGCCGAACCATTGGAA+TGG + chr1_4:2449379-2449398 Msa0143510:CDS 55.0%
CTGCGCCGAACCATTGGAAT+GGG + chr1_4:2449380-2449399 Msa0143510:CDS 55.0%
CCGTACGCAACCCATTCCAA+TGG - chr1_4:2449393-2449412 None:intergenic 55.0%
GCTGCTATTCATCGCGGACA+CGG + chr1_4:2449728-2449747 Msa0143510:intron 55.0%
GTCCGACACCAAAACAGCGA+TGG - chr1_4:2449795-2449814 None:intergenic 55.0%
AGCGGCAGTAGCCTTTACAG+GGG - chr1_4:2450574-2450593 None:intergenic 55.0%
GAAGCGGCAGTAGCCTTTAC+AGG - chr1_4:2450576-2450595 None:intergenic 55.0%
CAAAAGGGTGGGCAAGGATG+AGG - chr1_4:2450599-2450618 None:intergenic 55.0%
GCAGAACAAAAGGGTGGGCA+AGG - chr1_4:2450605-2450624 None:intergenic 55.0%
! CTTTTCATCCCTGCCGTCTG+AGG + chr1_4:2451090-2451109 Msa0143510:CDS 55.0%
TTCTCTCACCTCAGACGGCA+GGG - chr1_4:2451101-2451120 None:intergenic 55.0%
! TGCCGTCTGAGGTGAGAGAA+GGG + chr1_4:2451101-2451120 Msa0143510:CDS 55.0%
! GTCTGAGGTGAGAGAAGGGA+AGG + chr1_4:2451105-2451124 Msa0143510:CDS 55.0%
GAGGTGAGAGAAGGGAAGGT+TGG + chr1_4:2451109-2451128 Msa0143510:CDS 55.0%
AAGGGAAGGTTGGACCGTAC+TGG + chr1_4:2451119-2451138 Msa0143510:CDS 55.0%
! TGGACCGTACTGGTACCATG+AGG + chr1_4:2451129-2451148 Msa0143510:CDS 55.0%
GGAAGTGAGAGTGAGAGAGG+TGG + chr1_4:2451535-2451554 Msa0143510:CDS 55.0%
AATGAACAGGATCAGCGCCG+TGG + chr1_4:2452466-2452485 Msa0143510:CDS 55.0%
GAAATGTCCGGCCTCTTCCA+CGG - chr1_4:2452486-2452505 None:intergenic 55.0%
!! CAGACTGGCTTCAATGGCCA+TGG - chr1_4:2452536-2452555 None:intergenic 55.0%
CATGGCCATTGAAGCCAGTC+TGG + chr1_4:2452534-2452553 Msa0143510:CDS 55.0%
AGCTATGCCCTAAGGCCTGA+CGG - chr1_4:2452705-2452724 None:intergenic 55.0%
!! AGGGCATAGCTCTAGACCTC+TGG + chr1_4:2452714-2452733 Msa0143510:CDS 55.0%
! TTTTCCTGGCCAGGAAGTGG+AGG - chr1_4:2452754-2452773 None:intergenic 55.0%
! GACTTTTCCTGGCCAGGAAG+TGG - chr1_4:2452757-2452776 None:intergenic 55.0%
GCCTGGTCTGTACAAAGTCG+TGG + chr1_4:2452871-2452890 Msa0143510:CDS 55.0%
ACTACCTGCTGGTCCATCGA+AGG + chr1_4:2453032-2453051 Msa0143510:CDS 55.0%
ACTTGTGCCGCAGAAACTGG+AGG - chr1_4:2453147-2453166 None:intergenic 55.0%
CTCACTTGTGCCGCAGAAAC+TGG - chr1_4:2453150-2453169 None:intergenic 55.0%
! GTGGACTGTGTGCAGCAGTT+TGG + chr1_4:2453342-2453361 Msa0143510:CDS 55.0%
TGAGCTGGCAAGACTATGCC+CGG + chr1_4:2453383-2453402 Msa0143510:CDS 55.0%
CAAGACTATGCCCGGATGCT+CGG + chr1_4:2453391-2453410 Msa0143510:CDS 55.0%
TCTCTCTGCTTCCGAGCATC+CGG - chr1_4:2453405-2453424 None:intergenic 55.0%
! GGTGCTTATCGCACCGACAA+AGG + chr1_4:2453666-2453685 Msa0143510:CDS 55.0%
AATAAGGAGGATGGGGGTGG+TGG + chr1_4:2453792-2453811 Msa0143510:CDS 55.0%
ATAAGGAGGATGGGGGTGGT+GGG + chr1_4:2453793-2453812 Msa0143510:CDS 55.0%
! AAGGCGCACTCTGAGGAACT+TGG - chr1_4:2453841-2453860 None:intergenic 55.0%
AAGTTCCTCAGAGTGCGCCT+TGG + chr1_4:2453840-2453859 Msa0143510:CDS 55.0%
CCGAAGCAGAACCATCACCA+AGG - chr1_4:2453860-2453879 None:intergenic 55.0%
! ACGAGGTGTTTGGCGAAAGG+GGG + chr1_4:2453977-2453996 Msa0143510:CDS 55.0%
CTTCCCCTGATTCTGCTCTG+TGG + chr1_4:2454013-2454032 Msa0143510:exon 55.0%
AAGACGTGGAGCGGAAGGGT+CGG - chr1_4:2449215-2449234 None:intergenic 60.0%
TGCTGTCTGCGCCGAACCAT+TGG + chr1_4:2449374-2449393 Msa0143510:CDS 60.0%
! CGGACCTTGTTTGCATCGCG+AGG + chr1_4:2449410-2449429 Msa0143510:CDS 60.0%
GAAACGAAGACGAGCGACGC+AGG - chr1_4:2449445-2449464 None:intergenic 60.0%
GCTATTCATCGCGGACACGG+TGG + chr1_4:2449731-2449750 Msa0143510:intron 60.0%
GTGGGCAAGGATGAGGGAAG+CGG - chr1_4:2450592-2450611 None:intergenic 60.0%
CTTCTCTCACCTCAGACGGC+AGG - chr1_4:2451102-2451121 None:intergenic 60.0%
! CTGCCGTCTGAGGTGAGAGA+AGG + chr1_4:2451100-2451119 Msa0143510:CDS 60.0%
AAGCACAGGTGACTCCGACG+TGG + chr1_4:2451510-2451529 Msa0143510:CDS 60.0%
ACAGGTGACTCCGACGTGGA+TGG + chr1_4:2451514-2451533 Msa0143510:CDS 60.0%
CTGGCCAGGAAGTGGAGGAA+AGG - chr1_4:2452749-2452768 None:intergenic 60.0%
CTTTCCTCCACTTCCTGGCC+AGG + chr1_4:2452747-2452766 Msa0143510:CDS 60.0%
CCATGGCCGCACGTTTACGT+CGG + chr1_4:2452809-2452828 Msa0143510:CDS 60.0%
GCCATGCCGACGTAAACGTG+CGG - chr1_4:2452818-2452837 None:intergenic 60.0%
GTGTCCTTCGATGGACCAGC+AGG - chr1_4:2453039-2453058 None:intergenic 60.0%
! AGCGGAGGCTGGCTACTTGT+AGG - chr1_4:2453180-2453199 None:intergenic 60.0%
TAGCCAGCCTCCGCTGAATG+TGG + chr1_4:2453185-2453204 Msa0143510:CDS 60.0%
TCTCCACATTCAGCGGAGGC+TGG - chr1_4:2453191-2453210 None:intergenic 60.0%
! GGGCATAGTCTTGCCAGCTC+AGG - chr1_4:2453384-2453403 None:intergenic 60.0%
CTCTCTGCTTCCGAGCATCC+GGG - chr1_4:2453404-2453423 None:intergenic 60.0%
CATCACCAAGGCGCACTCTG+AGG - chr1_4:2453848-2453867 None:intergenic 60.0%
CTCAGAGTGCGCCTTGGTGA+TGG + chr1_4:2453846-2453865 Msa0143510:CDS 60.0%
! GGCTGCCTGTACGAGGTGTT+TGG + chr1_4:2453967-2453986 Msa0143510:CDS 60.0%
! CGAGGTGTTTGGCGAAAGGG+GGG + chr1_4:2453978-2453997 Msa0143510:CDS 60.0%
ACGAAGACGAGCGACGCAGG+TGG - chr1_4:2449442-2449461 None:intergenic 65.0%
GGGGGTAGGGGAGCAAACCT+TGG - chr1_4:2449526-2449545 None:intergenic 65.0%
CAGGATCAGCGCCGTGGAAG+AGG + chr1_4:2452472-2452491 Msa0143510:CDS 65.0%
ATCAGCGCCGTGGAAGAGGC+CGG + chr1_4:2452476-2452495 Msa0143510:CDS 65.0%
CCGACGTAAACGTGCGGCCA+TGG - chr1_4:2452812-2452831 None:intergenic 65.0%
GCCGCACGTTTACGTCGGCA+TGG + chr1_4:2452814-2452833 Msa0143510:CDS 65.0%
CAGCGCTAGCACCCATCGCA+AGG + chr1_4:2453491-2453510 Msa0143510:CDS 65.0%
GGAGTTGGGCTGCCTGTACG+AGG + chr1_4:2453960-2453979 Msa0143510:CDS 65.0%
GGTGTTTGGCGAAAGGGGGG+AGG + chr1_4:2453981-2454000 Msa0143510:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 2449103 2454511 2449103 ID=Msa0143510;Name=Msa0143510
chr1_4 mRNA 2449103 2454511 2449103 ID=Msa0143510-mRNA-1;Parent=Msa0143510;Name=Msa0143510-mRNA-1;_AED=0.05;_eAED=0.05;_QI=231|1|1|1|0.85|0.75|8|489|821
chr1_4 exon 2449103 2449140 2449103 ID=Msa0143510-mRNA-1:exon:1061;Parent=Msa0143510-mRNA-1
chr1_4 exon 2449167 2449527 2449167 ID=Msa0143510-mRNA-1:exon:1062;Parent=Msa0143510-mRNA-1
chr1_4 exon 2451058 2451357 2451058 ID=Msa0143510-mRNA-1:exon:1063;Parent=Msa0143510-mRNA-1
chr1_4 exon 2451457 2451665 2451457 ID=Msa0143510-mRNA-1:exon:1064;Parent=Msa0143510-mRNA-1
chr1_4 exon 2451768 2451816 2451768 ID=Msa0143510-mRNA-1:exon:1065;Parent=Msa0143510-mRNA-1
chr1_4 exon 2451934 2452023 2451934 ID=Msa0143510-mRNA-1:exon:1066;Parent=Msa0143510-mRNA-1
chr1_4 exon 2452234 2452296 2452234 ID=Msa0143510-mRNA-1:exon:1067;Parent=Msa0143510-mRNA-1
chr1_4 exon 2452436 2454511 2452436 ID=Msa0143510-mRNA-1:exon:1068;Parent=Msa0143510-mRNA-1
chr1_4 five_prime_UTR 2449103 2449140 2449103 ID=Msa0143510-mRNA-1:five_prime_utr;Parent=Msa0143510-mRNA-1
chr1_4 five_prime_UTR 2449167 2449359 2449167 ID=Msa0143510-mRNA-1:five_prime_utr;Parent=Msa0143510-mRNA-1
chr1_4 CDS 2449360 2449527 2449360 ID=Msa0143510-mRNA-1:cds;Parent=Msa0143510-mRNA-1
chr1_4 CDS 2451058 2451357 2451058 ID=Msa0143510-mRNA-1:cds;Parent=Msa0143510-mRNA-1
chr1_4 CDS 2451457 2451665 2451457 ID=Msa0143510-mRNA-1:cds;Parent=Msa0143510-mRNA-1
chr1_4 CDS 2451768 2451816 2451768 ID=Msa0143510-mRNA-1:cds;Parent=Msa0143510-mRNA-1
chr1_4 CDS 2451934 2452023 2451934 ID=Msa0143510-mRNA-1:cds;Parent=Msa0143510-mRNA-1
chr1_4 CDS 2452234 2452296 2452234 ID=Msa0143510-mRNA-1:cds;Parent=Msa0143510-mRNA-1
chr1_4 CDS 2452436 2454022 2452436 ID=Msa0143510-mRNA-1:cds;Parent=Msa0143510-mRNA-1
chr1_4 three_prime_UTR 2454023 2454511 2454023 ID=Msa0143510-mRNA-1:three_prime_utr;Parent=Msa0143510-mRNA-1
Gene Sequence

>Msa0143510

ATGGATGATTGTTGTGCTGTCTGCGCCGAACCATTGGAATGGGTTGCGTACGGACCTTGTTTGCATCGCGAGGTTTGCTCCACCTGCGTCGCTCGTCTTCGTTTCATTTGTGATGATCGACGTTGTTGCATCTGTAAGACCGAATGTAATCTCATCTTTGTTACCAAGGCTCTTGGAGATTATACAAGGGTGATCAATGACTTTTCATCCCTGCCGTCTGAGGTGAGAGAAGGGAAGGTTGGACCGTACTGGTACCATGAGGATATGAATGCATTTTTCGATGACGTGGACCATTACAAGATGATCAAGGCTATGTGCAGGCTTTCTTGCAGTGAATGCGACAAGATCGAGGAGCAACAAAATGATGGTTCAAGGCGACAAAGGTTTAGGAATATAGGGCAGCTGAAGGGTCACTTATTCCACCGTCATAAGTTGCATATGTGCAGTTTGTGTTTGGAGGGAAGGAAGGTGTTTATATGTGAGCAAAAATTATATACTAGAGCCCAGTTGAATCAACACATAAGCACAGGTGACTCCGACGTGGATGGAAGTGAGAGTGAGAGAGGTGGTTTTATGGGGCATCCTATGTGTGAATTTTGCAGAACCCCATTTTATGGGGACAATGAACTGTACACACACATGTCTACGGAACATTATACTTGTCATATATGCCAAAGGCAGCACCCGGGACAATTTGAATACTATAAGAACTATGATGACCTTGAGATCCACTTCCGACAACAACATTTCTTATGTGAAGATGAGGCTTGCCTTGCCAAGAAATTTATTGTTTTTCAATCTGAATCAGAGATGAAGAGACATAATGCTACGGAACATGGAGGGCGTATGTCACGGTCAAAGCGTAATGCTGCTCTTCAGATACCGACTAGTTTTCGATATAGACACAATAATGAACAGGATCAGCGCCGTGGAAGAGGCCGGACATTTCGTCGTGATCATTCTGAAAATCAACTTTCCATGGCCATTGAAGCCAGTCTGGAGACTGCTAATGCTGAGCAGACATACCGTGAGCCAACTTCAAGTAATGGGCCAATTGCTTATGATGACGGAGATGCACATATTGATTCCATCGTTAATCCGTTTGAATCATTAGCTACTGCAGATTCTGAATCAACTTCAAGATACCGTCAGGCCTTAGGGCATAGCTCTAGACCTCTGGTAGACTCTTCCTTTCCTCCACTTCCTGGCCAGGAAAAGTCCAAACACGAGTCTGAAGGTTCATCTAGCAATACCATGGCCGCACGTTTACGTCGGCATGGCAACAGAAATGTATCTGTTATTAATTCTGGAAATGCCTGGTCTGTACAAAGTCGTGGACCTGTACAACCTTCGCAATCTAAAAAGACAACAAAGTCTCAAAATTCTGGCCAGATGAAGACAGTAATTAACAGTGGACTTCCAGCATCAAGTTTTGCTAATTCTATTCAAGCTGCACATAGAACTGCTCATGGAAAACTACCTGCTGGTCCATCGAAGGACACACGTGACAATGGAAAAATCGTTCACTCTGCATCAGCTCCAAACCTCGTTGAAAACAACCCTGTTGGAGTTTCAATTTCTGATTTTCCTCCAGTTTCTGCGGCACAAGTGAGCAAGTTACCTACAAGTAGCCAGCCTCCGCTGAATGTGGAGAATGTTCAGTCTGCCAACAAGTCCTTGGTTGAAAAGATTCGTAGTGCGCTTAATTTTGACGAAGATAGATATACTATATTTAAAGACATATCTGCTCAATATCGCCAAGGCACGATAGATACTGATGCATATGTGGACTGTGTGCAGCAGTTTGGCTTGTTTCATCTTGTACCTGAGCTGGCAAGACTATGCCCGGATGCTCGGAAGCAGAGAGAACTTTTGGAGTCTTACAATGCTGGTTTGCAAAGAAACACTTTCCAAGAAAATGACGGGGTTTATGGCAGCGCTAGCACCCATCGCAAGGACAAAAATGTCGACAAGAAAGGTAAAGGTAAGTCATTAGATGTTAGGCGGAGTAACTCCACTGAGAGATTAGCAGATAGCTTTTTAAGCACTGTTCATCAACTACAGTCAAGTTATAAACCTTCAGAAGAGAAGTTGGAGGTGCTATCAAAGGGTGCTTATCGCACCGACAAAGGTAAATTAAAAATTGAGCCGCAGATTCAAACAAACTCTAGCAGTCAACATAAGACTAAGCTTGGTGGGCAGACTGAAACTTCAAATGGCAGTTTATCTAATCAAAATAAGGAGGATGGGGGTGGTGGGAACAAGCAACGCAAGAAAGCTTCCAAGTTCCTCAGAGTGCGCCTTGGTGATGGTTCTGCTTCGGCCCTTCTAGATCTTGAAAACTCAAGGACCACTTCTGATCCTGGAACAACGGACAGTTTAAATGGTAACAATAATGATTCTGGAGTTGGGCTGCCTGTACGAGGTGTTTGGCGAAAGGGGGGAGGTCAAAAACTCTTCCCCTGA
Protein sequence

>Msa0143510

MDDCCAVCAEPLEWVAYGPCLHREVCSTCVARLRFICDDRRCCICKTECNLIFVTKALGDYTRVINDFSSLPSEVREGKVGPYWYHEDMNAFFDDVDHYKMIKAMCRLSCSECDKIEEQQNDGSRRQRFRNIGQLKGHLFHRHKLHMCSLCLEGRKVFICEQKLYTRAQLNQHISTGDSDVDGSESERGGFMGHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQHPGQFEYYKNYDDLEIHFRQQHFLCEDEACLAKKFIVFQSESEMKRHNATEHGGRMSRSKRNAALQIPTSFRYRHNNEQDQRRGRGRTFRRDHSENQLSMAIEASLETANAEQTYREPTSSNGPIAYDDGDAHIDSIVNPFESLATADSESTSRYRQALGHSSRPLVDSSFPPLPGQEKSKHESEGSSSNTMAARLRRHGNRNVSVINSGNAWSVQSRGPVQPSQSKKTTKSQNSGQMKTVINSGLPASSFANSIQAAHRTAHGKLPAGPSKDTRDNGKIVHSASAPNLVENNPVGVSISDFPPVSAAQVSKLPTSSQPPLNVENVQSANKSLVEKIRSALNFDEDRYTIFKDISAQYRQGTIDTDAYVDCVQQFGLFHLVPELARLCPDARKQRELLESYNAGLQRNTFQENDGVYGSASTHRKDKNVDKKGKGKSLDVRRSNSTERLADSFLSTVHQLQSSYKPSEEKLEVLSKGAYRTDKGKLKIEPQIQTNSSSQHKTKLGGQTETSNGSLSNQNKEDGGGGNKQRKKASKFLRVRLGDGSASALLDLENSRTTSDPGTTDSLNGNNNDSGVGLPVRGVWRKGGGQKLFP*