Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1212840 | sp|G7JT50|AGUA_MEDTR | 97.531 | 81 | 2 | 0 | 20 | 100 | 294 | 374 | 1.47e-51 | 168 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1212840 | A0A445G3X4 | 90.000 | 80 | 8 | 0 | 21 | 100 | 212 | 291 | 7.94e-45 | 155 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007230 | Msa1212840 | 0.829218 | 5.819889e-55 | -8.615850e-47 |
| Msa0055590 | Msa1212840 | 0.836062 | 1.166418e-56 | -8.615850e-47 |
| Msa0079650 | Msa1212840 | 0.803169 | 3.963970e-49 | -8.615850e-47 |
| Msa0093440 | Msa1212840 | 0.807937 | 3.960310e-50 | -8.615850e-47 |
| Msa0105340 | Msa1212840 | 0.805984 | 1.025390e-49 | -8.615850e-47 |
| Msa0106370 | Msa1212840 | -0.805201 | 1.496264e-49 | -8.615850e-47 |
| Msa0621890 | Msa1212840 | 0.805848 | 1.095143e-49 | -8.615850e-47 |
| Msa0624730 | Msa1212840 | 0.808523 | 2.970614e-50 | -8.615850e-47 |
| Msa0626230 | Msa1212840 | 0.824845 | 6.471659e-54 | -8.615850e-47 |
| Msa0635470 | Msa1212840 | 0.810687 | 1.018492e-50 | -8.615850e-47 |
| Msa0641020 | Msa1212840 | 0.809934 | 1.480617e-50 | -8.615850e-47 |
| Msa0647000 | Msa1212840 | 0.803622 | 3.192095e-49 | -8.615850e-47 |
| Msa0674220 | Msa1212840 | 0.804205 | 2.415438e-49 | -8.615850e-47 |
| Msa0678240 | Msa1212840 | 0.807441 | 5.048125e-50 | -8.615850e-47 |
| Msa0697140 | Msa1212840 | 0.822787 | 1.964948e-53 | -8.615850e-47 |
| Msa0703490 | Msa1212840 | 0.813294 | 2.753016e-51 | -8.615850e-47 |
| Msa0708330 | Msa1212840 | 0.815218 | 1.034472e-51 | -8.615850e-47 |
| Msa0714600 | Msa1212840 | 0.811575 | 6.535914e-51 | -8.615850e-47 |
| Msa0715310 | Msa1212840 | 0.803785 | 2.952904e-49 | -8.615850e-47 |
| Msa0722930 | Msa1212840 | 0.861645 | 8.867383e-64 | -8.615850e-47 |
| Msa0723140 | Msa1212840 | 0.875124 | 3.945901e-68 | -8.615850e-47 |
| Msa0748610 | Msa1212840 | 0.800375 | 1.484708e-48 | -8.615850e-47 |
| Msa0756480 | Msa1212840 | 0.802356 | 5.832473e-49 | -8.615850e-47 |
| Msa0776030 | Msa1212840 | 0.838430 | 2.888801e-57 | -8.615850e-47 |
| Msa0792510 | Msa1212840 | 0.805410 | 1.352968e-49 | -8.615850e-47 |
| Msa0370480 | Msa1212840 | 0.802112 | 6.548333e-49 | -8.615850e-47 |
| Msa0418000 | Msa1212840 | 0.809497 | 1.837709e-50 | -8.615850e-47 |
| Msa0423090 | Msa1212840 | 0.805713 | 1.168923e-49 | -8.615850e-47 |
| Msa0436900 | Msa1212840 | 0.801308 | 9.574006e-49 | -8.615850e-47 |
| Msa0440110 | Msa1212840 | 0.801220 | 9.978569e-49 | -8.615850e-47 |
| Msa0455260 | Msa1212840 | 0.803829 | 2.892355e-49 | -8.615850e-47 |
| Msa0457370 | Msa1212840 | 0.802565 | 5.282725e-49 | -8.615850e-47 |
| Msa0980440 | Msa1212840 | 0.810429 | 1.157844e-50 | -8.615850e-47 |
| Msa0988500 | Msa1212840 | 0.826123 | 3.223666e-54 | -8.615850e-47 |
| Msa1000020 | Msa1212840 | 0.809027 | 2.318128e-50 | -8.615850e-47 |
| Msa1008340 | Msa1212840 | 0.828003 | 1.144355e-54 | -8.615850e-47 |
| Msa1008490 | Msa1212840 | 0.835852 | 1.317923e-56 | -8.615850e-47 |
| Msa1009000 | Msa1212840 | 0.804761 | 1.849632e-49 | -8.615850e-47 |
| Msa1032350 | Msa1212840 | 0.801707 | 7.929322e-49 | -8.615850e-47 |
| Msa1036390 | Msa1212840 | 0.811082 | 8.365071e-51 | -8.615850e-47 |
| Msa1041730 | Msa1212840 | 0.823912 | 1.072788e-53 | -8.615850e-47 |
| Msa1049950 | Msa1212840 | 0.828039 | 1.122056e-54 | -8.615850e-47 |
| Msa1055430 | Msa1212840 | 0.801222 | 9.967009e-49 | -8.615850e-47 |
| Msa1072350 | Msa1212840 | 0.819657 | 1.035100e-52 | -8.615850e-47 |
| Msa1076680 | Msa1212840 | 0.812057 | 5.133396e-51 | -8.615850e-47 |
| Msa1081600 | Msa1212840 | 0.805599 | 1.235123e-49 | -8.615850e-47 |
| Msa1083410 | Msa1212840 | 0.818447 | 1.951176e-52 | -8.615850e-47 |
| Msa1098560 | Msa1212840 | 0.825791 | 3.866563e-54 | -8.615850e-47 |
| Msa0253370 | Msa1212840 | 0.802392 | 5.732656e-49 | -8.615850e-47 |
| Msa0257250 | Msa1212840 | 0.814656 | 1.378906e-51 | -8.615850e-47 |
| Msa0264940 | Msa1212840 | -0.803599 | 3.227652e-49 | -8.615850e-47 |
| Msa0266000 | Msa1212840 | -0.826340 | 2.862040e-54 | -8.615850e-47 |
| Msa0302990 | Msa1212840 | -0.807766 | 4.306055e-50 | -8.615850e-47 |
| Msa0304740 | Msa1212840 | 0.819460 | 1.148116e-52 | -8.615850e-47 |
| Msa0304990 | Msa1212840 | 0.804121 | 2.515116e-49 | -8.615850e-47 |
| Msa0313990 | Msa1212840 | 0.801604 | 8.323922e-49 | -8.615850e-47 |
| Msa0325470 | Msa1212840 | 0.805399 | 1.360432e-49 | -8.615850e-47 |
| Msa0330400 | Msa1212840 | 0.801554 | 8.524098e-49 | -8.615850e-47 |
| Msa0331590 | Msa1212840 | 0.816443 | 5.514976e-52 | -8.615850e-47 |
| Msa0363460 | Msa1212840 | 0.801759 | 7.738564e-49 | -8.615850e-47 |
| Msa1108780 | Msa1212840 | 0.815056 | 1.124081e-51 | -8.615850e-47 |
| Msa1125080 | Msa1212840 | 0.813581 | 2.380594e-51 | -8.615850e-47 |
| Msa1128160 | Msa1212840 | 0.825902 | 3.638399e-54 | -8.615850e-47 |
| Msa1139240 | Msa1212840 | 0.826952 | 2.045168e-54 | -8.615850e-47 |
| Msa1165360 | Msa1212840 | 0.824528 | 7.687918e-54 | -8.615850e-47 |
| Msa1166370 | Msa1212840 | 0.810036 | 1.407155e-50 | -8.615850e-47 |
| Msa1167220 | Msa1212840 | 0.827031 | 1.958581e-54 | -8.615850e-47 |
| Msa1191390 | Msa1212840 | 0.805052 | 1.608134e-49 | -8.615850e-47 |
| Msa1201990 | Msa1212840 | 0.807866 | 4.099721e-50 | -8.615850e-47 |
| Msa1212840 | Msa1213460 | 0.829090 | 6.252726e-55 | -8.615850e-47 |
| Msa1212840 | Msa1220230 | 0.800479 | 1.413493e-48 | -8.615850e-47 |
| Msa1212840 | Msa1260510 | 0.826512 | 2.605318e-54 | -8.615850e-47 |
| Msa1212840 | Msa1271280 | 0.815955 | 7.090390e-52 | -8.615850e-47 |
| Msa1212840 | Msa1271300 | 0.815974 | 7.020940e-52 | -8.615850e-47 |
| Msa1212840 | Msa1287160 | 0.802815 | 4.689866e-49 | -8.615850e-47 |
| Msa1212840 | Msa1295010 | 0.800198 | 1.612731e-48 | -8.615850e-47 |
| Msa1212840 | Msa1300360 | 0.825969 | 3.507958e-54 | -8.615850e-47 |
| Msa1212840 | Msa1304850 | 0.818498 | 1.899523e-52 | -8.615850e-47 |
| Msa1212840 | Msa1329990 | 0.835262 | 1.858688e-56 | -8.615850e-47 |
| Msa1212840 | Msa1331730 | 0.835839 | 1.328623e-56 | -8.615850e-47 |
| Msa1212840 | Msa1335970 | -0.803821 | 2.903179e-49 | -8.615850e-47 |
| Msa1212840 | Msa1347620 | 0.803433 | 3.493860e-49 | -8.615850e-47 |
| Msa1212840 | Msa1350840 | 0.802511 | 5.418957e-49 | -8.615850e-47 |
| Msa1212840 | Msa1365040 | -0.827523 | 1.492642e-54 | -8.615850e-47 |
| Msa1212840 | Msa1373950 | 0.812343 | 4.447606e-51 | -8.615850e-47 |
| Msa1212840 | Msa1386520 | 0.802471 | 5.523744e-49 | -8.615850e-47 |
| Msa1212840 | Msa1438270 | 0.819516 | 1.114707e-52 | -8.615850e-47 |
| Msa1212840 | Msa1444060 | -0.811199 | 7.887637e-51 | -8.615850e-47 |
| Msa1212840 | Msa1445250 | 0.810436 | 1.154000e-50 | -8.615850e-47 |
| Msa1212840 | Msa1447090 | 0.811628 | 6.365833e-51 | -8.615850e-47 |
| Msa1212840 | Msa1447440 | 0.805047 | 1.611643e-49 | -8.615850e-47 |
| Msa1212840 | Msa1456810 | 0.808489 | 3.020683e-50 | -8.615850e-47 |
| Msa1212840 | Msa1457670 | -0.839304 | 1.717118e-57 | -8.615850e-47 |
| Msa1212840 | Msa1460310 | -0.808397 | 3.160266e-50 | -8.615850e-47 |
| Msa1212840 | Msa1466810 | 0.801260 | 9.793746e-49 | -8.615850e-47 |
| Msa0492740 | Msa1212840 | 0.820540 | 6.499178e-53 | -8.615850e-47 |
| Msa0528970 | Msa1212840 | 0.807846 | 4.139955e-50 | -8.615850e-47 |
| Msa0543900 | Msa1212840 | 0.813336 | 2.695069e-51 | -8.615850e-47 |
| Msa0582110 | Msa1212840 | 0.810552 | 1.089146e-50 | -8.615850e-47 |
| Msa0596100 | Msa1212840 | 0.804010 | 2.652233e-49 | -8.615850e-47 |
| Msa0596230 | Msa1212840 | 0.808779 | 2.619158e-50 | -8.615850e-47 |
| Msa0599770 | Msa1212840 | 0.808903 | 2.464128e-50 | -8.615850e-47 |
| Msa0843280 | Msa1212840 | 0.849402 | 3.308292e-60 | -8.615850e-47 |
| Msa0883660 | Msa1212840 | 0.814019 | 1.906801e-51 | -8.615850e-47 |
| Msa0883670 | Msa1212840 | 0.806417 | 8.309349e-50 | -8.615850e-47 |
| Msa0887000 | Msa1212840 | 0.815768 | 7.805985e-52 | -8.615850e-47 |
| Msa0902980 | Msa1212840 | 0.810279 | 1.247397e-50 | -8.615850e-47 |
| Msa0946120 | Msa1212840 | 0.815326 | 9.789816e-52 | -8.615850e-47 |
| Msa0951720 | Msa1212840 | 0.852817 | 3.598987e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1212840 | MtrunA17_Chr4g0061951 | 97.531 | 81 | 2 | 0 | 20 | 100 | 294 | 374 | 1.09e-52 | 168 |
| Msa1212840 | MtrunA17_Chr4g0061931 | 83.562 | 73 | 12 | 0 | 28 | 100 | 128 | 200 | 1.67e-38 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1212840 | AT5G08170.2 | 79.012 | 81 | 17 | 0 | 19 | 99 | 209 | 289 | 4.88e-39 | 132 |
| Msa1212840 | AT5G08170.3 | 79.012 | 81 | 17 | 0 | 19 | 99 | 209 | 289 | 4.88e-39 | 132 |
| Msa1212840 | AT5G08170.5 | 79.012 | 81 | 17 | 0 | 19 | 99 | 209 | 289 | 4.88e-39 | 132 |
| Msa1212840 | AT5G08170.4 | 79.012 | 81 | 17 | 0 | 19 | 99 | 287 | 367 | 1.40e-38 | 132 |
| Msa1212840 | AT5G08170.1 | 79.012 | 81 | 17 | 0 | 19 | 99 | 293 | 373 | 3.00e-38 | 131 |
Find 27 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTATCATTGCTCCACAATT+TGG | 0.199735 | 8_1:+72817520 | Msa1212840:CDS |
| CTTCTGCCATGGAGAGTTCT+TGG | 0.303146 | 8_1:+72816029 | Msa1212840:CDS |
| GTTGAGAGAATATTTCTAAA+TGG | 0.323501 | 8_1:-72818196 | None:intergenic |
| TTGTGGGAATTGAAGGTTCC+AGG | 0.350594 | 8_1:+72818121 | Msa1212840:CDS |
| TTAAATATTGTAATACTTGT+TGG | 0.351571 | 8_1:+72818345 | Msa1212840:three_prime_UTR |
| GGAGCCAAGCCAAGGCTTCC+TGG | 0.371687 | 8_1:+72817451 | Msa1212840:CDS |
| TCCTAGGTTGTGGGAATTGA+AGG | 0.384816 | 8_1:+72818114 | Msa1212840:intron |
| AGAATGATTGATTAATTGCT+TGG | 0.402577 | 8_1:+72818253 | Msa1212840:three_prime_UTR |
| GGAAGGTCTTAGACAGAATT+CGG | 0.404780 | 8_1:-72817570 | None:intergenic |
| TGGAGAGTTCTTGGCTGTTA+AGG | 0.424292 | 8_1:+72816038 | Msa1212840:CDS |
| AGAGAATATTTCTAAATGGC+TGG | 0.455579 | 8_1:-72818192 | None:intergenic |
| CGTCGAAACACGACTTGCAC+GGG | 0.499614 | 8_1:-72818310 | None:intergenic |
| AGTACCAGGAAGCCTTGGCT+TGG | 0.515607 | 8_1:-72817455 | None:intergenic |
| ACCTGACAAAACAATCTCCC+TGG | 0.521534 | 8_1:-72818139 | None:intergenic |
| AGTCTAGTACCAGGAAGCCT+TGG | 0.524063 | 8_1:-72817460 | None:intergenic |
| TGCAATGTAAAAGTTTACAT+AGG | 0.549734 | 8_1:-72817491 | None:intergenic |
| TTTGTTGATTCCTAGGTTGT+GGG | 0.556323 | 8_1:+72818105 | Msa1212840:intron |
| GTGATAGAAAACTTCTGCCA+TGG | 0.557765 | 8_1:+72816018 | Msa1212840:CDS |
| AAAATACTCACTTCATGATG+AGG | 0.559236 | 8_1:-72817592 | None:intergenic |
| TGTGCGTCTAGGCAATGAAA+AGG | 0.561917 | 8_1:+72815987 | None:intergenic |
| TGTGGGAATTGAAGGTTCCA+GGG | 0.582236 | 8_1:+72818122 | Msa1212840:CDS |
| AAATACTCACTTCATGATGA+GGG | 0.594366 | 8_1:-72817591 | None:intergenic |
| TCGTGTTTCGACGCACATTG+TGG | 0.604809 | 8_1:+72818320 | Msa1212840:three_prime_UTR |
| GAAGCAGCAAGTCTAGTACC+AGG | 0.605026 | 8_1:-72817469 | None:intergenic |
| AGGATGATGGAGCCAAGCCA+AGG | 0.607977 | 8_1:+72817443 | Msa1212840:intron |
| TAACAGCCAAGAACTCTCCA+TGG | 0.624393 | 8_1:-72816035 | None:intergenic |
| ACTCACTTCATGATGAGGGA+AGG | 0.632244 | 8_1:-72817587 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTAATTTATTTTTTT+TGG | + | chr8_1:72817609-72817628 | Msa1212840:intron | 0.0% |
| !! | TTGGTATAAAAAATAATTAA+AGG | + | chr8_1:72816378-72816397 | Msa1212840:intron | 10.0% |
| !! | TTAGGAAAATAAAAATAAAA+AGG | + | chr8_1:72816623-72816642 | Msa1212840:intron | 10.0% |
| !! | ATAAATTAGATTTAGATATT+GGG | + | chr8_1:72817154-72817173 | Msa1212840:intron | 10.0% |
| !!! | AGCTAAAGTTTAAAATATAT+TGG | + | chr8_1:72816312-72816331 | Msa1212840:intron | 15.0% |
| !!! | TTTTTTCTACTTCATTATTA+TGG | + | chr8_1:72816343-72816362 | Msa1212840:intron | 15.0% |
| !!! | TCTACAATAATTTGATAATT+AGG | + | chr8_1:72816961-72816980 | Msa1212840:intron | 15.0% |
| !! | CATAAATTAGATTTAGATAT+TGG | + | chr8_1:72817153-72817172 | Msa1212840:intron | 15.0% |
| !!! | AACTTTGATATGTATTTTAT+TGG | + | chr8_1:72818219-72818238 | Msa1212840:three_prime_UTR | 15.0% |
| !! | TTAAATATTGTAATACTTGT+TGG | + | chr8_1:72818345-72818364 | Msa1212840:three_prime_UTR | 15.0% |
| !!! | AGTTTAAAATATATTGGTGT+TGG | + | chr8_1:72816318-72816337 | Msa1212840:intron | 20.0% |
| !!! | ATTATGGTTTGATGTTATTT+TGG | + | chr8_1:72816359-72816378 | Msa1212840:intron | 20.0% |
| !!! | TAATATCATGTTTTTCTGTT+TGG | + | chr8_1:72816742-72816761 | Msa1212840:intron | 20.0% |
| !! | TTTAAATTGAACACTGTAAA+AGG | + | chr8_1:72817127-72817146 | Msa1212840:intron | 20.0% |
| ! | AAAAATCGTAGTCTAGATAA+GGG | - | chr8_1:72816153-72816172 | None:intergenic | 25.0% |
| ! | GACACAATTTCATTTCATAT+AGG | + | chr8_1:72816577-72816596 | Msa1212840:intron | 25.0% |
| ! | AAAAAATTGCTTACAGCATA+GGG | - | chr8_1:72816706-72816725 | None:intergenic | 25.0% |
| ! | TAAAAAATTGCTTACAGCAT+AGG | - | chr8_1:72816707-72816726 | None:intergenic | 25.0% |
| !! | TTTTTCATATAATGAGTTGC+AGG | - | chr8_1:72817273-72817292 | None:intergenic | 25.0% |
| !! | GGTGTAATTCTATATTTTTC+AGG | + | chr8_1:72817423-72817442 | Msa1212840:intron | 25.0% |
| !!! | TTCTATATTTTTCAGGATGA+TGG | + | chr8_1:72817430-72817449 | Msa1212840:intron | 25.0% |
| ! | TGCAATGTAAAAGTTTACAT+AGG | - | chr8_1:72817494-72817513 | None:intergenic | 25.0% |
| !! | GTAAACTTTTACATTGCAAA+TGG | + | chr8_1:72817496-72817515 | Msa1212840:CDS | 25.0% |
| ! | ACAATTTGGAGATAAAAAGT+GGG | + | chr8_1:72817534-72817553 | Msa1212840:CDS | 25.0% |
| ! | TATAATGAAACTACTGGATT+GGG | - | chr8_1:72817976-72817995 | None:intergenic | 25.0% |
| ! | TAGTACTATAATGAAACTAC+TGG | - | chr8_1:72817982-72818001 | None:intergenic | 25.0% |
| ! | GTTTATGAACTGTAACATTT+AGG | + | chr8_1:72818037-72818056 | Msa1212840:intron | 25.0% |
| !!! | TATAATGTTTGTTGATTCCT+AGG | + | chr8_1:72818098-72818117 | Msa1212840:intron | 25.0% |
| !! | GTTGAGAGAATATTTCTAAA+TGG | - | chr8_1:72818199-72818218 | None:intergenic | 25.0% |
| ! | AGAATGATTGATTAATTGCT+TGG | + | chr8_1:72818253-72818272 | Msa1212840:three_prime_UTR | 25.0% |
| CATTACCTTTCATTTCTAAG+AGG | + | chr8_1:72816087-72816106 | Msa1212840:intron | 30.0% | |
| ! | ATTAGCCTCTTAGAAATGAA+AGG | - | chr8_1:72816095-72816114 | None:intergenic | 30.0% |
| ! | TCATTTCTAAGAGGCTAATT+AGG | + | chr8_1:72816096-72816115 | Msa1212840:intron | 30.0% |
| AAAATCGTAGTCTAGATAAG+GGG | - | chr8_1:72816152-72816171 | None:intergenic | 30.0% | |
| CAAAAATCGTAGTCTAGATA+AGG | - | chr8_1:72816154-72816173 | None:intergenic | 30.0% | |
| ! | CTTATCTAGACTACGATTTT+TGG | + | chr8_1:72816152-72816171 | Msa1212840:intron | 30.0% |
| TGATGATATGTCTTCAATTC+TGG | + | chr8_1:72816182-72816201 | Msa1212840:intron | 30.0% | |
| ATAGTAGTATGAAGATACAC+TGG | + | chr8_1:72816456-72816475 | Msa1212840:intron | 30.0% | |
| AAATGAAATTGTGTCCAAAC+AGG | - | chr8_1:72816572-72816591 | None:intergenic | 30.0% | |
| !!! | TGCTGTAAGCAATTTTTTAG+AGG | + | chr8_1:72816708-72816727 | Msa1212840:intron | 30.0% |
| ATTGTAGAGATGCAATCATA+GGG | - | chr8_1:72816949-72816968 | None:intergenic | 30.0% | |
| TATTGTAGAGATGCAATCAT+AGG | - | chr8_1:72816950-72816969 | None:intergenic | 30.0% | |
| TATCCTATTGGAAACAAAAC+TGG | - | chr8_1:72817011-72817030 | None:intergenic | 30.0% | |
| !!! | AGTTTTGTTTCCAATAGGAT+AGG | + | chr8_1:72817010-72817029 | Msa1212840:intron | 30.0% |
| GATATTACATCCTATCCTAT+TGG | - | chr8_1:72817023-72817042 | None:intergenic | 30.0% | |
| ATCTGAGTAGTAAATGCAAT+AGG | - | chr8_1:72817072-72817091 | None:intergenic | 30.0% | |
| TATTCATTCTTAACCATACC+AGG | - | chr8_1:72817330-72817349 | None:intergenic | 30.0% | |
| TACACAATATAAACCTCTAC+TGG | + | chr8_1:72817393-72817412 | Msa1212840:intron | 30.0% | |
| !! | CACTTTTTATCTCCAAATTG+TGG | - | chr8_1:72817535-72817554 | None:intergenic | 30.0% |
| CACAATTTGGAGATAAAAAG+TGG | + | chr8_1:72817533-72817552 | Msa1212840:CDS | 30.0% | |
| AAATACTCACTTCATGATGA+GGG | - | chr8_1:72817594-72817613 | None:intergenic | 30.0% | |
| AAAATACTCACTTCATGATG+AGG | - | chr8_1:72817595-72817614 | None:intergenic | 30.0% | |
| !! | CTTATTCATGATGATTTGGT+TGG | - | chr8_1:72817909-72817928 | None:intergenic | 30.0% |
| ATCGCTTATTCATGATGATT+TGG | - | chr8_1:72817913-72817932 | None:intergenic | 30.0% | |
| CTATAATGAAACTACTGGAT+TGG | - | chr8_1:72817977-72817996 | None:intergenic | 30.0% | |
| !!! | GTATCACTTTTGAGTTGTTT+TGG | + | chr8_1:72818059-72818078 | Msa1212840:intron | 30.0% |
| ! | AGAGAATATTTCTAAATGGC+TGG | - | chr8_1:72818195-72818214 | None:intergenic | 30.0% |
| ! | GATTTTCAAATGCAACTAGT+TGG | + | chr8_1:72818284-72818303 | Msa1212840:three_prime_UTR | 30.0% |
| TAACGTTTGAACCCATTTGT+AGG | + | chr8_1:72816061-72816080 | Msa1212840:intron | 35.0% | |
| ! | AGGTTGTCATTCAGAGTATT+TGG | + | chr8_1:72816398-72816417 | Msa1212840:intron | 35.0% |
| AAATAGCTTCAAACACAGGT+AGG | - | chr8_1:72816491-72816510 | None:intergenic | 35.0% | |
| TGTGTTATCCTAATCCTGTT+TGG | + | chr8_1:72816555-72816574 | Msa1212840:intron | 35.0% | |
| AATTGTGTCCAAACAGGATT+AGG | - | chr8_1:72816566-72816585 | None:intergenic | 35.0% | |
| ! | TGCTCACTGGTTAGTTATTT+AGG | + | chr8_1:72816605-72816624 | Msa1212840:intron | 35.0% |
| ! | GATGCTAAATTTTGCAACTG+CGG | + | chr8_1:72816645-72816664 | Msa1212840:intron | 35.0% |
| TATTAGCCAAATTGCTCACT+TGG | + | chr8_1:72816779-72816798 | Msa1212840:intron | 35.0% | |
| !!! | AAGCCAGTTTTGTTTCCAAT+AGG | + | chr8_1:72817005-72817024 | Msa1212840:intron | 35.0% |
| TAGCAAGATTGATTGATACC+TGG | + | chr8_1:72817309-72817328 | Msa1212840:intron | 35.0% | |
| AGATTGATTGATACCTGGTA+TGG | + | chr8_1:72817314-72817333 | Msa1212840:intron | 35.0% | |
| TTTCCAAGTGATGAAGTTTG+TGG | + | chr8_1:72817769-72817788 | Msa1212840:intron | 35.0% | |
| !! | TTTGTTGATTCCTAGGTTGT+GGG | + | chr8_1:72818105-72818124 | Msa1212840:intron | 35.0% |
| GTGATAGAAAACTTCTGCCA+TGG | + | chr8_1:72816018-72816037 | Msa1212840:CDS | 40.0% | |
| AGGTAATGCTGCCTACAAAT+GGG | - | chr8_1:72816075-72816094 | None:intergenic | 40.0% | |
| AAGGTAATGCTGCCTACAAA+TGG | - | chr8_1:72816076-72816095 | None:intergenic | 40.0% | |
| ! | TCACCCTGCTATAGTGTTTT+TGG | + | chr8_1:72816252-72816271 | Msa1212840:intron | 40.0% |
| ! | CACCCTGCTATAGTGTTTTT+GGG | + | chr8_1:72816253-72816272 | Msa1212840:intron | 40.0% |
| AGCCCAAAAACACTATAGCA+GGG | - | chr8_1:72816258-72816277 | None:intergenic | 40.0% | |
| TAAACTTTAGCTGCCAATCC+TGG | - | chr8_1:72816304-72816323 | None:intergenic | 40.0% | |
| CAGCAAATAGCTTCAAACAC+AGG | - | chr8_1:72816495-72816514 | None:intergenic | 40.0% | |
| ! | GTGTTTGAAGCTATTTGCTG+AGG | + | chr8_1:72816495-72816514 | Msa1212840:intron | 40.0% |
| AGGTAACCAAGTGAGCAATT+TGG | - | chr8_1:72816788-72816807 | None:intergenic | 40.0% | |
| TACCTATGCACAGAACTACT+CGG | + | chr8_1:72816803-72816822 | Msa1212840:intron | 40.0% | |
| GATATTGGGCATGCAATCTT+TGG | + | chr8_1:72817168-72817187 | Msa1212840:intron | 40.0% | |
| TGCAGGATAGTCTCATCATT+AGG | - | chr8_1:72817256-72817275 | None:intergenic | 40.0% | |
| TAAACCTCTACTGGATGTTC+TGG | + | chr8_1:72817402-72817421 | Msa1212840:intron | 40.0% | |
| GCTATCATTGCTCCACAATT+TGG | + | chr8_1:72817520-72817539 | Msa1212840:CDS | 40.0% | |
| GGAAGGTCTTAGACAGAATT+CGG | - | chr8_1:72817573-72817592 | None:intergenic | 40.0% | |
| CACTAACTACTGCAGTTATG+TGG | + | chr8_1:72817718-72817737 | Msa1212840:intron | 40.0% | |
| TAGTTTGAGCCACAGATCTT+CGG | - | chr8_1:72817795-72817814 | None:intergenic | 40.0% | |
| ! | GATTTGGTTGGATGAGAACA+TGG | - | chr8_1:72817897-72817916 | None:intergenic | 40.0% |
| ! | TTGGGACATTTGCGATTTTG+TGG | - | chr8_1:72817958-72817977 | None:intergenic | 40.0% |
| !! | GTTTGTTGATTCCTAGGTTG+TGG | + | chr8_1:72818104-72818123 | Msa1212840:intron | 40.0% |
| TAACAGCCAAGAACTCTCCA+TGG | - | chr8_1:72816038-72816057 | None:intergenic | 45.0% | |
| TGGAGAGTTCTTGGCTGTTA+AGG | + | chr8_1:72816038-72816057 | Msa1212840:CDS | 45.0% | |
| CAGCCCAAAAACACTATAGC+AGG | - | chr8_1:72816259-72816278 | None:intergenic | 45.0% | |
| !!! | CTGCTATAGTGTTTTTGGGC+TGG | + | chr8_1:72816257-72816276 | Msa1212840:intron | 45.0% |
| CACATTTATCCAGCCAGGAT+TGG | + | chr8_1:72816288-72816307 | Msa1212840:intron | 45.0% | |
| GCTTCAAACACAGGTAGGAA+TGG | - | chr8_1:72816486-72816505 | None:intergenic | 45.0% | |
| ! | CATATAGGCGATTTGCTCAC+TGG | + | chr8_1:72816592-72816611 | Msa1212840:intron | 45.0% |
| ! | NTCCGAGTAGTTCTGTGCAT+AGG | - | chr8_1:72816808-72816827 | None:intergenic | 45.0% |
| GCAATCATAGGGTTACCACT+GGG | - | chr8_1:72816938-72816957 | None:intergenic | 45.0% | |
| TGCAATCATAGGGTTACCAC+TGG | - | chr8_1:72816939-72816958 | None:intergenic | 45.0% | |
| GCTGAGAGCAAAACAATGAG+AGG | - | chr8_1:72817104-72817123 | None:intergenic | 45.0% | |
| !! | GCATGCAATCTTTGGAATGC+TGG | + | chr8_1:72817176-72817195 | Msa1212840:intron | 45.0% |
| GAATGCTGGTAGTTAGCAGT+CGG | + | chr8_1:72817190-72817209 | Msa1212840:intron | 45.0% | |
| TACACCAGAACATCCAGTAG+AGG | - | chr8_1:72817409-72817428 | None:intergenic | 45.0% | |
| ACTCACTTCATGATGAGGGA+AGG | - | chr8_1:72817590-72817609 | None:intergenic | 45.0% | |
| TCCTAGGTTGTGGGAATTGA+AGG | + | chr8_1:72818114-72818133 | Msa1212840:intron | 45.0% | |
| ACCTTCAATTCCCACAACCT+AGG | - | chr8_1:72818118-72818137 | None:intergenic | 45.0% | |
| TTGTGGGAATTGAAGGTTCC+AGG | + | chr8_1:72818121-72818140 | Msa1212840:CDS | 45.0% | |
| TGTGGGAATTGAAGGTTCCA+GGG | + | chr8_1:72818122-72818141 | Msa1212840:CDS | 45.0% | |
| !! | TCCAGGGAGATTGTTTTGTC+AGG | + | chr8_1:72818138-72818157 | Msa1212840:CDS | 45.0% |
| ACCTGACAAAACAATCTCCC+TGG | - | chr8_1:72818142-72818161 | None:intergenic | 45.0% | |
| !! | AGGGAGATTGTTTTGTCAGG+TGG | + | chr8_1:72818141-72818160 | Msa1212840:CDS | 45.0% |
| CTTCTGCCATGGAGAGTTCT+TGG | + | chr8_1:72816029-72816048 | Msa1212840:CDS | 50.0% | |
| ! | TAAGGGGAGCTTTGACCCAA+CGG | - | chr8_1:72816136-72816155 | None:intergenic | 50.0% |
| CTCTGCACATTTATCCAGCC+AGG | + | chr8_1:72816283-72816302 | Msa1212840:intron | 50.0% | |
| AGTCTAGTACCAGGAAGCCT+TGG | - | chr8_1:72817463-72817482 | None:intergenic | 50.0% | |
| GAAGCAGCAAGTCTAGTACC+AGG | - | chr8_1:72817472-72817491 | None:intergenic | 50.0% | |
| CGGCCACAAACTTCATCACT+TGG | - | chr8_1:72817775-72817794 | None:intergenic | 50.0% | |
| AGTTTGTGGCCGAAGATCTG+TGG | + | chr8_1:72817783-72817802 | Msa1212840:intron | 50.0% | |
| TCGTGTTTCGACGCACATTG+TGG | + | chr8_1:72818320-72818339 | Msa1212840:three_prime_UTR | 50.0% | |
| GCAGCAACACACCAACCGTT+GGG | + | chr8_1:72816118-72816137 | Msa1212840:intron | 55.0% | |
| CTTTAGCTGCCAATCCTGGC+TGG | - | chr8_1:72816300-72816319 | None:intergenic | 55.0% | |
| !! | AGGATGATGGAGCCAAGCCA+AGG | + | chr8_1:72817443-72817462 | Msa1212840:intron | 55.0% |
| AGTACCAGGAAGCCTTGGCT+TGG | - | chr8_1:72817458-72817477 | None:intergenic | 55.0% | |
| CGTCGAAACACGACTTGCAC+GGG | - | chr8_1:72818313-72818332 | None:intergenic | 55.0% | |
| GCGTCGAAACACGACTTGCA+CGG | - | chr8_1:72818314-72818333 | None:intergenic | 55.0% | |
| GGCAGCAACACACCAACCGT+TGG | + | chr8_1:72816117-72816136 | Msa1212840:intron | 60.0% | |
| ! | GGGAGCTTTGACCCAACGGT+TGG | - | chr8_1:72816132-72816151 | None:intergenic | 60.0% |
| GGAGCCAAGCCAAGGCTTCC+TGG | + | chr8_1:72817451-72817470 | Msa1212840:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 72816000 | 72818455 | 72816000 | ID=Msa1212840;Name=Msa1212840 |
| chr8_1 | mRNA | 72816000 | 72818455 | 72816000 | ID=Msa1212840-mRNA-1;Parent=Msa1212840;Name=Msa1212840-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.5|0.33|0.66|1|0.66|3|252|100 |
| chr8_1 | exon | 72816000 | 72816059 | 72816000 | ID=Msa1212840-mRNA-1:exon:24620;Parent=Msa1212840-mRNA-1 |
| chr8_1 | exon | 72817445 | 72817603 | 72817445 | ID=Msa1212840-mRNA-1:exon:24621;Parent=Msa1212840-mRNA-1 |
| chr8_1 | exon | 72818120 | 72818455 | 72818120 | ID=Msa1212840-mRNA-1:exon:24622;Parent=Msa1212840-mRNA-1 |
| chr8_1 | CDS | 72816000 | 72816059 | 72816000 | ID=Msa1212840-mRNA-1:cds;Parent=Msa1212840-mRNA-1 |
| chr8_1 | CDS | 72817445 | 72817603 | 72817445 | ID=Msa1212840-mRNA-1:cds;Parent=Msa1212840-mRNA-1 |
| chr8_1 | CDS | 72818120 | 72818203 | 72818120 | ID=Msa1212840-mRNA-1:cds;Parent=Msa1212840-mRNA-1 |
| chr8_1 | three_prime_UTR | 72818204 | 72818455 | 72818204 | ID=Msa1212840-mRNA-1:three_prime_utr;Parent=Msa1212840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
