Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0720490 | XP_013453681.2 | 96.667 | 120 | 4 | 0 | 1 | 120 | 1 | 120 | 8.20e-77 | 233 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0720490 | G7KF23 | 96.667 | 120 | 4 | 0 | 1 | 120 | 1 | 120 | 3.91e-77 | 233 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011410 | Msa0720490 | -0.813357 | 2.667237e-51 | -8.615850e-47 |
| Msa0030050 | Msa0720490 | 0.802340 | 5.877437e-49 | -8.615850e-47 |
| Msa0095910 | Msa0720490 | 0.805952 | 1.041302e-49 | -8.615850e-47 |
| Msa0606600 | Msa0720490 | 0.816895 | 4.368460e-52 | -8.615850e-47 |
| Msa0647300 | Msa0720490 | 0.807458 | 5.004625e-50 | -8.615850e-47 |
| Msa0685810 | Msa0720490 | -0.812866 | 3.417565e-51 | -8.615850e-47 |
| Msa0685860 | Msa0720490 | -0.802593 | 5.213027e-49 | -8.615850e-47 |
| Msa0686830 | Msa0720490 | 0.814352 | 1.609475e-51 | -8.615850e-47 |
| Msa0701430 | Msa0720490 | 0.808353 | 3.228635e-50 | -8.615850e-47 |
| Msa0708680 | Msa0720490 | 0.815401 | 9.420519e-52 | -8.615850e-47 |
| Msa0720490 | Msa0720870 | 0.819150 | 1.350516e-52 | -8.615850e-47 |
| Msa0720490 | Msa0738460 | -0.802703 | 4.947690e-49 | -8.615850e-47 |
| Msa0720490 | Msa0761020 | 0.816598 | 5.091212e-52 | -8.615850e-47 |
| Msa0720490 | Msa0761420 | 0.804412 | 2.187038e-49 | -8.615850e-47 |
| Msa0720490 | Msa0803310 | 0.856360 | 3.390345e-62 | -8.615850e-47 |
| Msa0720490 | Msa0829990 | 0.801234 | 9.912220e-49 | -8.615850e-47 |
| Msa0720490 | Msa0841670 | 0.888221 | 7.156056e-73 | -8.615850e-47 |
| Msa0720490 | Msa0896920 | 0.805664 | 1.196539e-49 | -8.615850e-47 |
| Msa0720490 | Msa0901270 | 0.801673 | 8.057131e-49 | -8.615850e-47 |
| Msa0720490 | Msa1001120 | 0.809613 | 1.735095e-50 | -8.615850e-47 |
| Msa0720490 | Msa1082080 | 0.805621 | 1.221945e-49 | -8.615850e-47 |
| Msa0720490 | Msa1107250 | 0.810346 | 1.206279e-50 | -8.615850e-47 |
| Msa0720490 | Msa1108560 | 0.816841 | 4.491040e-52 | -8.615850e-47 |
| Msa0720490 | Msa1146980 | 0.807506 | 4.889877e-50 | -8.615850e-47 |
| Msa0720490 | Msa1150740 | 0.822206 | 2.682097e-53 | -8.615850e-47 |
| Msa0720490 | Msa1150760 | 0.812426 | 4.264169e-51 | -8.615850e-47 |
| Msa0720490 | Msa1150920 | 0.805265 | 1.451375e-49 | -8.615850e-47 |
| Msa0720490 | Msa1165460 | 0.806500 | 7.981214e-50 | -8.615850e-47 |
| Msa0720490 | Msa1172870 | 0.815152 | 1.070274e-51 | -8.615850e-47 |
| Msa0720490 | Msa1186340 | 0.823663 | 1.226813e-53 | -8.615850e-47 |
| Msa0720490 | Msa1191350 | 0.802290 | 6.016869e-49 | -8.615850e-47 |
| Msa0720490 | Msa1191530 | -0.804800 | 1.815521e-49 | -8.615850e-47 |
| Msa0720490 | Msa1199540 | -0.812040 | 5.177472e-51 | -8.615850e-47 |
| Msa0720490 | Msa1202110 | 0.800841 | 1.192923e-48 | -8.615850e-47 |
| Msa0720490 | Msa1212210 | -0.802044 | 6.761469e-49 | -8.615850e-47 |
| Msa0720490 | Msa1238250 | 0.802993 | 4.310527e-49 | -8.615850e-47 |
| Msa0720490 | Msa1262910 | 0.801895 | 7.256191e-49 | -8.615850e-47 |
| Msa0720490 | Msa1267990 | 0.814235 | 1.707889e-51 | -8.615850e-47 |
| Msa0720490 | Msa1279200 | -0.801279 | 9.704709e-49 | -8.615850e-47 |
| Msa0720490 | Msa1319030 | 0.814327 | 1.630300e-51 | -8.615850e-47 |
| Msa0720490 | Msa1319190 | 0.815566 | 8.658831e-52 | -8.615850e-47 |
| Msa0720490 | Msa1321970 | 0.817435 | 3.302816e-52 | -8.615850e-47 |
| Msa0720490 | Msa1342360 | -0.801869 | 7.345055e-49 | -8.615850e-47 |
| Msa0720490 | Msa1377980 | -0.812281 | 4.588518e-51 | -8.615850e-47 |
| Msa0720490 | Msa1380740 | 0.807446 | 5.034831e-50 | -8.615850e-47 |
| Msa0720490 | Msa1384410 | -0.804836 | 1.783990e-49 | -8.615850e-47 |
| Msa0720490 | Msa1408280 | -0.809980 | 1.446706e-50 | -8.615850e-47 |
| Msa0720490 | Msa1445010 | 0.816081 | 6.645646e-52 | -8.615850e-47 |
| Msa0127220 | Msa0720490 | -0.823286 | 1.502946e-53 | -8.615850e-47 |
| Msa0164560 | Msa0720490 | 0.802303 | 5.980992e-49 | -8.615850e-47 |
| Msa0187660 | Msa0720490 | 0.812387 | 4.349272e-51 | -8.615850e-47 |
| Msa0374040 | Msa0720490 | 0.817095 | 3.939096e-52 | -8.615850e-47 |
| Msa0405200 | Msa0720490 | 0.819559 | 1.089681e-52 | -8.615850e-47 |
| Msa0423200 | Msa0720490 | 0.820927 | 5.296563e-53 | -8.615850e-47 |
| Msa0423220 | Msa0720490 | 0.808079 | 3.693273e-50 | -8.615850e-47 |
| Msa0443040 | Msa0720490 | 0.801402 | 9.156531e-49 | -8.615850e-47 |
| Msa0456450 | Msa0720490 | -0.803039 | 4.216928e-49 | -8.615850e-47 |
| Msa0459930 | Msa0720490 | 0.803602 | 3.222886e-49 | -8.615850e-47 |
| Msa0464310 | Msa0720490 | 0.801715 | 7.899781e-49 | -8.615850e-47 |
| Msa0248320 | Msa0720490 | 0.803075 | 4.145207e-49 | -8.615850e-47 |
| Msa0253230 | Msa0720490 | -0.805581 | 1.245752e-49 | -8.615850e-47 |
| Msa0267700 | Msa0720490 | 0.803351 | 3.633459e-49 | -8.615850e-47 |
| Msa0303900 | Msa0720490 | 0.828420 | 9.079693e-55 | -8.615850e-47 |
| Msa0324810 | Msa0720490 | 0.803741 | 3.016691e-49 | -8.615850e-47 |
| Msa0333770 | Msa0720490 | 0.807116 | 5.914079e-50 | -8.615850e-47 |
| Msa0354550 | Msa0720490 | 0.850430 | 1.707146e-60 | -8.615850e-47 |
| Msa0358470 | Msa0720490 | 0.811247 | 7.702641e-51 | -8.615850e-47 |
| Msa0490060 | Msa0720490 | 0.822278 | 2.580768e-53 | -8.615850e-47 |
| Msa0491780 | Msa0720490 | 0.801132 | 1.040106e-48 | -8.615850e-47 |
| Msa0496070 | Msa0720490 | 0.837018 | 6.655796e-57 | -8.615850e-47 |
| Msa0497680 | Msa0720490 | 0.817223 | 3.685745e-52 | -8.615850e-47 |
| Msa0515130 | Msa0720490 | 0.802646 | 5.082475e-49 | -8.615850e-47 |
| Msa0515150 | Msa0720490 | 0.802591 | 5.216716e-49 | -8.615850e-47 |
| Msa0545680 | Msa0720490 | 0.808799 | 2.593549e-50 | -8.615850e-47 |
| Msa0572730 | Msa0720490 | -0.809267 | 2.059275e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0720490 | MtrunA17_Chr5g0411241 | 96.667 | 120 | 4 | 0 | 1 | 120 | 1 | 120 | 7.54e-81 | 233 |
| Msa0720490 | MtrunA17_Chr5g0411231 | 82.500 | 120 | 21 | 0 | 1 | 120 | 1 | 120 | 5.81e-68 | 200 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 27 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGGCCTTCAGTCTTGAAAA+TGG | 0.356723 | 5_1:+16523925 | None:intergenic |
| TTATGCAGTGATGGTGGAGC+TGG | 0.397441 | 5_1:-16524022 | Msa0720490:intron |
| CTTGCTCTTGAGTGAAGCTC+TGG | 0.411535 | 5_1:+16524684 | None:intergenic |
| TCACTGCTACTCTCAATAAC+TGG | 0.438274 | 5_1:+16523995 | None:intergenic |
| CCCTTGCCAGAGTTTACACC+AGG | 0.459349 | 5_1:+16523905 | None:intergenic |
| AGGACTGAAGGGCCTGATGC+TGG | 0.490624 | 5_1:-16524418 | Msa0720490:CDS |
| GGCAATGTGTTGTGCAAGAC+AGG | 0.514042 | 5_1:-16524466 | Msa0720490:CDS |
| ACAACACATTGCCCAAGCCC+TGG | 0.525921 | 5_1:+16524476 | None:intergenic |
| CCCTGGTGTAAACTCTGGCA+AGG | 0.541663 | 5_1:-16523906 | Msa0720490:CDS |
| TATGCAGTGATGGTGGAGCT+GGG | 0.557903 | 5_1:-16524021 | Msa0720490:intron |
| ACATTCTGCAAGTGTGGTGA+AGG | 0.561546 | 5_1:-16523959 | Msa0720490:CDS |
| ATTGAGAGTAGCAGTGACAA+TGG | 0.563224 | 5_1:-16523989 | Msa0720490:CDS |
| CAGAGCTTCACTCAAGAGCA+AGG | 0.567749 | 5_1:-16524683 | Msa0720490:CDS |
| TTGCTCTTGAGTGAAGCTCT+GGG | 0.573531 | 5_1:+16524685 | None:intergenic |
| GTTGGACATGTGTTATAACT+AGG | 0.581816 | 5_1:-16524438 | Msa0720490:CDS |
| GTGTTATAACTAGGACTGAA+GGG | 0.595455 | 5_1:-16524429 | Msa0720490:CDS |
| TGTGCAAGACAGGTAAAGGT+TGG | 0.598871 | 5_1:-16524456 | Msa0720490:CDS |
| AAACTCTTATGCAGTGATGG+TGG | 0.602169 | 5_1:-16524028 | Msa0720490:intron |
| GAAGGCCCTGGTGTAAACTC+TGG | 0.603912 | 5_1:-16523911 | Msa0720490:CDS |
| TGTGTTATAACTAGGACTGA+AGG | 0.610701 | 5_1:-16524430 | Msa0720490:CDS |
| CCTGGTGTAAACTCTGGCAA+GGG | 0.620143 | 5_1:-16523905 | Msa0720490:CDS |
| GTGTTGTGCAAGACAGGTAA+AGG | 0.626364 | 5_1:-16524460 | Msa0720490:CDS |
| AGAGCTTCACTCAAGAGCAA+GGG | 0.651871 | 5_1:-16524682 | Msa0720490:intron |
| TCTGCAAGTGTGGTGAAGGG+TGG | 0.652623 | 5_1:-16523955 | Msa0720490:CDS |
| AGTGAAACATTCTGCAAGTG+TGG | 0.671634 | 5_1:-16523965 | Msa0720490:CDS |
| CATTCTGCAAGTGTGGTGAA+GGG | 0.681189 | 5_1:-16523958 | Msa0720490:CDS |
| CCTTGCCAGAGTTTACACCA+GGG | 0.773669 | 5_1:+16523906 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACTGTAAAGATGAAATAA+AGG | + | chr5_1:16523924-16523943 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTACTCCAAAATA+AGG | - | chr5_1:16523975-16523994 | Msa0720490:CDS | 20.0% |
| !! | TAAAATAATAATAAGAGGAG+TGG | + | chr5_1:16524213-16524232 | None:intergenic | 20.0% |
| !! | GCAGTTAAAATAATAATAAG+AGG | + | chr5_1:16524218-16524237 | None:intergenic | 20.0% |
| !! | AAACTGTAAAGATGAAATAA+AGG | + | chr5_1:16523924-16523943 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTACTCCAAAATA+AGG | - | chr5_1:16523975-16523994 | Msa0720490:CDS | 20.0% |
| !! | TAAAATAATAATAAGAGGAG+TGG | + | chr5_1:16524213-16524232 | None:intergenic | 20.0% |
| !! | GCAGTTAAAATAATAATAAG+AGG | + | chr5_1:16524218-16524237 | None:intergenic | 20.0% |
| ! | TGTAAAGATGAAATAAAGGA+TGG | + | chr5_1:16523920-16523939 | None:intergenic | 25.0% |
| ! | AATTATGACAGGTATGAAAA+TGG | + | chr5_1:16524005-16524024 | None:intergenic | 25.0% |
| !! | TTTCTAACATTTTCATAACC+GGG | + | chr5_1:16524378-16524397 | None:intergenic | 25.0% |
| !! | GTTTCTAACATTTTCATAAC+CGG | + | chr5_1:16524379-16524398 | None:intergenic | 25.0% |
| ! | TGTAAAGATGAAATAAAGGA+TGG | + | chr5_1:16523920-16523939 | None:intergenic | 25.0% |
| ! | AATTATGACAGGTATGAAAA+TGG | + | chr5_1:16524005-16524024 | None:intergenic | 25.0% |
| !! | TTTCTAACATTTTCATAACC+GGG | + | chr5_1:16524378-16524397 | None:intergenic | 25.0% |
| !! | GTTTCTAACATTTTCATAAC+CGG | + | chr5_1:16524379-16524398 | None:intergenic | 25.0% |
| ! | GCTTATTGGTTAATTATGAC+AGG | + | chr5_1:16524016-16524035 | None:intergenic | 30.0% |
| ! | TTAACCAATAAGCTTTGTGT+AGG | - | chr5_1:16524023-16524042 | Msa0720490:intron | 30.0% |
| TGAAAATGTCAAATACTGCT+TGG | + | chr5_1:16524289-16524308 | None:intergenic | 30.0% | |
| ! | TTCTAACATTTTCATAACCG+GGG | + | chr5_1:16524377-16524396 | None:intergenic | 30.0% |
| ! | GCTTATTGGTTAATTATGAC+AGG | + | chr5_1:16524016-16524035 | None:intergenic | 30.0% |
| ! | TTAACCAATAAGCTTTGTGT+AGG | - | chr5_1:16524023-16524042 | Msa0720490:intron | 30.0% |
| TGAAAATGTCAAATACTGCT+TGG | + | chr5_1:16524289-16524308 | None:intergenic | 30.0% | |
| ! | TTCTAACATTTTCATAACCG+GGG | + | chr5_1:16524377-16524396 | None:intergenic | 30.0% |
| CTTTCCTACACAAAGCTTAT+TGG | + | chr5_1:16524030-16524049 | None:intergenic | 35.0% | |
| ! | CCTGAGTTTTTATCTTGAAC+TGG | + | chr5_1:16524055-16524074 | None:intergenic | 35.0% |
| CCAGTTCAAGATAAAAACTC+AGG | - | chr5_1:16524052-16524071 | Msa0720490:intron | 35.0% | |
| GTTGGACATGTGTTATAACT+AGG | - | chr5_1:16524113-16524132 | Msa0720490:intron | 35.0% | |
| TGTGTTATAACTAGGACTGA+AGG | - | chr5_1:16524121-16524140 | Msa0720490:intron | 35.0% | |
| GTGTTATAACTAGGACTGAA+GGG | - | chr5_1:16524122-16524141 | Msa0720490:intron | 35.0% | |
| ! | GGCAAAGTTTTTGCTAAATG+TGG | - | chr5_1:16524154-16524173 | Msa0720490:intron | 35.0% |
| ! | TCTAACATTTTCATAACCGG+GGG | + | chr5_1:16524376-16524395 | None:intergenic | 35.0% |
| ATCAAACTCTTATGCAGTGA+TGG | - | chr5_1:16524520-16524539 | Msa0720490:intron | 35.0% | |
| !! | TGTTCCATTTTCAAGACTGA+AGG | - | chr5_1:16524622-16524641 | Msa0720490:intron | 35.0% |
| CTTTCCTACACAAAGCTTAT+TGG | + | chr5_1:16524030-16524049 | None:intergenic | 35.0% | |
| ! | CCTGAGTTTTTATCTTGAAC+TGG | + | chr5_1:16524055-16524074 | None:intergenic | 35.0% |
| CCAGTTCAAGATAAAAACTC+AGG | - | chr5_1:16524052-16524071 | Msa0720490:intron | 35.0% | |
| GTTGGACATGTGTTATAACT+AGG | - | chr5_1:16524113-16524132 | Msa0720490:intron | 35.0% | |
| TGTGTTATAACTAGGACTGA+AGG | - | chr5_1:16524121-16524140 | Msa0720490:intron | 35.0% | |
| GTGTTATAACTAGGACTGAA+GGG | - | chr5_1:16524122-16524141 | Msa0720490:intron | 35.0% | |
| ! | GGCAAAGTTTTTGCTAAATG+TGG | - | chr5_1:16524154-16524173 | Msa0720490:intron | 35.0% |
| ! | TCTAACATTTTCATAACCGG+GGG | + | chr5_1:16524376-16524395 | None:intergenic | 35.0% |
| ATCAAACTCTTATGCAGTGA+TGG | - | chr5_1:16524520-16524539 | Msa0720490:intron | 35.0% | |
| !! | TGTTCCATTTTCAAGACTGA+AGG | - | chr5_1:16524622-16524641 | Msa0720490:intron | 35.0% |
| !!! | GAAAATGGAGCGCCTTATTT+TGG | + | chr5_1:16523990-16524009 | None:intergenic | 40.0% |
| TCAAGATAAAAACTCAGGCC+AGG | - | chr5_1:16524057-16524076 | Msa0720490:intron | 40.0% | |
| CAAGATAAAAACTCAGGCCA+GGG | - | chr5_1:16524058-16524077 | Msa0720490:intron | 40.0% | |
| GTCAATGATCAATTTACCCC+CGG | - | chr5_1:16524357-16524376 | Msa0720490:intron | 40.0% | |
| !! | TTGACGTCTGAATTGATTCG+TGG | - | chr5_1:16524419-16524438 | Msa0720490:CDS | 40.0% |
| AAACTCTTATGCAGTGATGG+TGG | - | chr5_1:16524523-16524542 | Msa0720490:intron | 40.0% | |
| TCACTGCTACTCTCAATAAC+TGG | + | chr5_1:16524559-16524578 | None:intergenic | 40.0% | |
| ATTGAGAGTAGCAGTGACAA+TGG | - | chr5_1:16524562-16524581 | Msa0720490:intron | 40.0% | |
| AGTGAAACATTCTGCAAGTG+TGG | - | chr5_1:16524586-16524605 | Msa0720490:intron | 40.0% | |
| !!! | GAAAATGGAGCGCCTTATTT+TGG | + | chr5_1:16523990-16524009 | None:intergenic | 40.0% |
| TCAAGATAAAAACTCAGGCC+AGG | - | chr5_1:16524057-16524076 | Msa0720490:intron | 40.0% | |
| CAAGATAAAAACTCAGGCCA+GGG | - | chr5_1:16524058-16524077 | Msa0720490:intron | 40.0% | |
| GTCAATGATCAATTTACCCC+CGG | - | chr5_1:16524357-16524376 | Msa0720490:intron | 40.0% | |
| !! | TTGACGTCTGAATTGATTCG+TGG | - | chr5_1:16524419-16524438 | Msa0720490:CDS | 40.0% |
| AAACTCTTATGCAGTGATGG+TGG | - | chr5_1:16524523-16524542 | Msa0720490:intron | 40.0% | |
| TCACTGCTACTCTCAATAAC+TGG | + | chr5_1:16524559-16524578 | None:intergenic | 40.0% | |
| ATTGAGAGTAGCAGTGACAA+TGG | - | chr5_1:16524562-16524581 | Msa0720490:intron | 40.0% | |
| AGTGAAACATTCTGCAAGTG+TGG | - | chr5_1:16524586-16524605 | Msa0720490:intron | 40.0% | |
| TTGCTCTTGAGTGAAGCTCT+GGG | + | chr5_1:16523869-16523888 | None:intergenic | 45.0% | |
| AGAGCTTCACTCAAGAGCAA+GGG | - | chr5_1:16523869-16523888 | Msa0720490:CDS | 45.0% | |
| GTGTTGTGCAAGACAGGTAA+AGG | - | chr5_1:16524091-16524110 | Msa0720490:intron | 45.0% | |
| TGTGCAAGACAGGTAAAGGT+TGG | - | chr5_1:16524095-16524114 | Msa0720490:intron | 45.0% | |
| GCAAAAACTTTGCCAGCATC+AGG | + | chr5_1:16524148-16524167 | None:intergenic | 45.0% | |
| ACATTCTGCAAGTGTGGTGA+AGG | - | chr5_1:16524592-16524611 | Msa0720490:intron | 45.0% | |
| CATTCTGCAAGTGTGGTGAA+GGG | - | chr5_1:16524593-16524612 | Msa0720490:intron | 45.0% | |
| AGGGCCTTCAGTCTTGAAAA+TGG | + | chr5_1:16524629-16524648 | None:intergenic | 45.0% | |
| !! | ATTTTCAAGACTGAAGGCCC+TGG | - | chr5_1:16524628-16524647 | Msa0720490:intron | 45.0% |
| TTGCTCTTGAGTGAAGCTCT+GGG | + | chr5_1:16523869-16523888 | None:intergenic | 45.0% | |
| AGAGCTTCACTCAAGAGCAA+GGG | - | chr5_1:16523869-16523888 | Msa0720490:CDS | 45.0% | |
| GTGTTGTGCAAGACAGGTAA+AGG | - | chr5_1:16524091-16524110 | Msa0720490:intron | 45.0% | |
| TGTGCAAGACAGGTAAAGGT+TGG | - | chr5_1:16524095-16524114 | Msa0720490:intron | 45.0% | |
| GCAAAAACTTTGCCAGCATC+AGG | + | chr5_1:16524148-16524167 | None:intergenic | 45.0% | |
| ACATTCTGCAAGTGTGGTGA+AGG | - | chr5_1:16524592-16524611 | Msa0720490:intron | 45.0% | |
| CATTCTGCAAGTGTGGTGAA+GGG | - | chr5_1:16524593-16524612 | Msa0720490:intron | 45.0% | |
| AGGGCCTTCAGTCTTGAAAA+TGG | + | chr5_1:16524629-16524648 | None:intergenic | 45.0% | |
| !! | ATTTTCAAGACTGAAGGCCC+TGG | - | chr5_1:16524628-16524647 | Msa0720490:intron | 45.0% |
| CTTGCTCTTGAGTGAAGCTC+TGG | + | chr5_1:16523870-16523889 | None:intergenic | 50.0% | |
| CAGAGCTTCACTCAAGAGCA+AGG | - | chr5_1:16523868-16523887 | Msa0720490:CDS | 50.0% | |
| TAAAAACTCAGGCCAGGGCT+TGG | - | chr5_1:16524063-16524082 | Msa0720490:intron | 50.0% | |
| AAAAACTCAGGCCAGGGCTT+GGG | - | chr5_1:16524064-16524083 | Msa0720490:intron | 50.0% | |
| GGCAATGTGTTGTGCAAGAC+AGG | - | chr5_1:16524085-16524104 | Msa0720490:intron | 50.0% | |
| !! | TTATGCAGTGATGGTGGAGC+TGG | - | chr5_1:16524529-16524548 | Msa0720490:intron | 50.0% |
| !! | TATGCAGTGATGGTGGAGCT+GGG | - | chr5_1:16524530-16524549 | Msa0720490:intron | 50.0% |
| CCTTGCCAGAGTTTACACCA+GGG | + | chr5_1:16524648-16524667 | None:intergenic | 50.0% | |
| CCTGGTGTAAACTCTGGCAA+GGG | - | chr5_1:16524646-16524665 | Msa0720490:intron | 50.0% | |
| CTTGCTCTTGAGTGAAGCTC+TGG | + | chr5_1:16523870-16523889 | None:intergenic | 50.0% | |
| CAGAGCTTCACTCAAGAGCA+AGG | - | chr5_1:16523868-16523887 | Msa0720490:CDS | 50.0% | |
| TAAAAACTCAGGCCAGGGCT+TGG | - | chr5_1:16524063-16524082 | Msa0720490:intron | 50.0% | |
| AAAAACTCAGGCCAGGGCTT+GGG | - | chr5_1:16524064-16524083 | Msa0720490:intron | 50.0% | |
| GGCAATGTGTTGTGCAAGAC+AGG | - | chr5_1:16524085-16524104 | Msa0720490:intron | 50.0% | |
| !! | TTATGCAGTGATGGTGGAGC+TGG | - | chr5_1:16524529-16524548 | Msa0720490:intron | 50.0% |
| !! | TATGCAGTGATGGTGGAGCT+GGG | - | chr5_1:16524530-16524549 | Msa0720490:intron | 50.0% |
| CCTTGCCAGAGTTTACACCA+GGG | + | chr5_1:16524648-16524667 | None:intergenic | 50.0% | |
| CCTGGTGTAAACTCTGGCAA+GGG | - | chr5_1:16524646-16524665 | Msa0720490:intron | 50.0% | |
| ACAACACATTGCCCAAGCCC+TGG | + | chr5_1:16524078-16524097 | None:intergenic | 55.0% | |
| TCTGCAAGTGTGGTGAAGGG+TGG | - | chr5_1:16524596-16524615 | Msa0720490:intron | 55.0% | |
| GAAGGCCCTGGTGTAAACTC+TGG | - | chr5_1:16524640-16524659 | Msa0720490:intron | 55.0% | |
| CCCTGGTGTAAACTCTGGCA+AGG | - | chr5_1:16524645-16524664 | Msa0720490:intron | 55.0% | |
| CCCTTGCCAGAGTTTACACC+AGG | + | chr5_1:16524649-16524668 | None:intergenic | 55.0% | |
| ACAACACATTGCCCAAGCCC+TGG | + | chr5_1:16524078-16524097 | None:intergenic | 55.0% | |
| TCTGCAAGTGTGGTGAAGGG+TGG | - | chr5_1:16524596-16524615 | Msa0720490:intron | 55.0% | |
| GAAGGCCCTGGTGTAAACTC+TGG | - | chr5_1:16524640-16524659 | Msa0720490:intron | 55.0% | |
| CCCTGGTGTAAACTCTGGCA+AGG | - | chr5_1:16524645-16524664 | Msa0720490:intron | 55.0% | |
| CCCTTGCCAGAGTTTACACC+AGG | + | chr5_1:16524649-16524668 | None:intergenic | 55.0% | |
| AGGACTGAAGGGCCTGATGC+TGG | - | chr5_1:16524133-16524152 | Msa0720490:intron | 60.0% | |
| AGGACTGAAGGGCCTGATGC+TGG | - | chr5_1:16524133-16524152 | Msa0720490:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 16523859 | 16524714 | 16523859 | ID=Msa0720490;Name=Msa0720490 |
| chr5_1 | mRNA | 16523859 | 16524714 | 16523859 | ID=Msa0720490-mRNA-1;Parent=Msa0720490;Name=Msa0720490-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0|0|1|1|1|3|0|120 |
| chr5_1 | exon | 16524683 | 16524714 | 16524683 | ID=Msa0720490-mRNA-1:exon:6299;Parent=Msa0720490-mRNA-1 |
| chr5_1 | exon | 16524376 | 16524528 | 16524376 | ID=Msa0720490-mRNA-1:exon:6298;Parent=Msa0720490-mRNA-1 |
| chr5_1 | exon | 16523859 | 16524036 | 16523859 | ID=Msa0720490-mRNA-1:exon:6297;Parent=Msa0720490-mRNA-1 |
| chr5_1 | CDS | 16524683 | 16524714 | 16524683 | ID=Msa0720490-mRNA-1:cds;Parent=Msa0720490-mRNA-1 |
| chr5_1 | CDS | 16524376 | 16524528 | 16524376 | ID=Msa0720490-mRNA-1:cds;Parent=Msa0720490-mRNA-1 |
| chr5_1 | CDS | 16523859 | 16524036 | 16523859 | ID=Msa0720490-mRNA-1:cds;Parent=Msa0720490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
